sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3G-AB0O-01 10 82034954 82034954 C T MAT1A Missense_Mutation p.G257E 0.11 deleterious(0) probably_damaging(0.968) TCGA-3G-AB0O-01 11 6413189 6413189 G T SMPD1 Silent p.L298L 0.15 TCGA-3G-AB0O-01 11 66331603 66331603 A G CTSF Missense_Mutation p.F446L 0.06 deleterious(0) possibly_damaging(0.7) TCGA-3G-AB0O-01 12 31944230 31944230 A T H3F3C 3'UTR 0.05 TCGA-3G-AB0O-01 12 346413 346413 C - SLC6A13 Frame_Shift_Del p.A203Pfs*25 0.21 TCGA-3G-AB0O-01 19 19414748 19414748 G - SUGP1 Intron 0.08 TCGA-3G-AB0O-01 1 162351634 162351634 C T C1orf226 Intron 0.06 TCGA-3G-AB0O-01 20 60708385 60708385 C A LSM14B Missense_Mutation p.N342K 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-3G-AB0O-01 22 42269966 42269966 C T SREBF2 Silent p.S344S 0.06 TCGA-3G-AB0O-01 2 100007061 100007061 C T EIF5B Missense_Mutation p.R881C 0.06 benign(0.041) TCGA-3G-AB0O-01 8 104145440 104145440 C T C8orf56 Missense_Mutation p.A45T 0.09 unknown(0) TCGA-3G-AB0Q-01 10 128149995 128149995 G A C10orf90 Missense_Mutation p.T565M 0.41 tolerated(0.2) benign(0.005) TCGA-3G-AB0Q-01 12 56115574 56115574 A G RDH5 Missense_Mutation p.M138V 0.40 tolerated(0.34) benign(0) TCGA-3G-AB0Q-01 13 101760136 101760136 G A NALCN Missense_Mutation p.S790F 0.06 tolerated(0.08) possibly_damaging(0.484) TCGA-3G-AB0Q-01 13 103493478 103493478 A G BIVM 3'UTR 0.06 TCGA-3G-AB0Q-01 13 95696021 95696021 T C ABCC4 Missense_Mutation p.K1217R 0.36 tolerated(0.05) benign(0.012) TCGA-3G-AB0Q-01 14 66974889 66974889 A G GPHN 5'UTR 0.28 TCGA-3G-AB0Q-01 15 23932210 23932210 G A NDN Missense_Mutation p.P52L 0.25 deleterious(0.05) benign(0.038) TCGA-3G-AB0Q-01 15 28386902 28386902 C A HERC2 Nonsense_Mutation p.E3931* 0.06 TCGA-3G-AB0Q-01 16 3139891 3139891 C T ZSCAN10 Missense_Mutation p.R460Q 0.20 tolerated(0.64) benign(0.001) TCGA-3G-AB0Q-01 17 26851557 26851557 G A FOXN1 Missense_Mutation p.D54N 0.48 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-3G-AB0Q-01 17 57743887 57743887 G C CLTC Missense_Mutation p.R610P 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-3G-AB0Q-01 17 73258007 73258007 C G MRPS7 Missense_Mutation p.A9G 0.32 tolerated_low_confidence(0.48) benign(0.05) TCGA-3G-AB0Q-01 17 7798460 7798460 C T CHD3 Nonsense_Mutation p.R558* 0.38 TCGA-3G-AB0Q-01 19 15198335 15198335 C A OR1I1 Missense_Mutation p.N153K 0.44 tolerated(0.16) probably_damaging(0.999) TCGA-3G-AB0Q-01 19 16339014 16339014 A C AP1M1 Missense_Mutation p.I307L 0.23 tolerated(0.14) benign(0.012) TCGA-3G-AB0Q-01 19 49120073 49120073 C T RPL18 Silent p.K69K 0.36 TCGA-3G-AB0Q-01 1 92148542 92148542 T G TGFBR3 3'UTR 0.41 TCGA-3G-AB0Q-01 20 34295084 34295084 G T RBM39 Missense_Mutation p.A422E 0.37 deleterious(0) benign(0.04) TCGA-3G-AB0Q-01 22 38062064 38062064 C G PDXP 3'UTR 0.51 TCGA-3G-AB0Q-01 22 50722370 50722371 - CGG PLXNB2 In_Frame_Ins p.R771dup 0.26 TCGA-3G-AB0Q-01 2 198273163 198273163 G A SF3B1 Silent p.S349S 0.41 TCGA-3G-AB0Q-01 2 25174396 25174396 A G DNAJC27 Missense_Mutation p.C186R 0.21 deleterious(0.03) benign(0.315) TCGA-3G-AB0Q-01 6 34213555 34213555 C G HMGA1 3'UTR 0.18 TCGA-3G-AB0Q-01 7 100016710 100016710 T C ZCWPW1 Intron 0.06 TCGA-3G-AB0Q-01 7 129098231 129098231 C A STRIP2 Missense_Mutation p.A405E 0.42 tolerated(0.49) benign(0.012) TCGA-3G-AB0Q-01 7 20453875 20453875 C T ITGB8 3'UTR 0.62 TCGA-3G-AB0Q-01 7 20795337 20795337 G T ABCB5 3'UTR 0.44 TCGA-3G-AB0Q-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.37 deleterious(0.05) probably_damaging(0.992) TCGA-3G-AB0Q-01 X 153591113 153591114 - T FLNA Frame_Shift_Ins p.V774Sfs*48 0.18 TCGA-3G-AB0T-01 11 128781313 128781313 C T KCNJ5 Missense_Mutation p.P49S 0.12 tolerated(0.61) benign(0.101) TCGA-3G-AB0T-01 12 114362541 114362541 C T RBM19 Missense_Mutation p.V756M 0.12 deleterious(0) probably_damaging(0.954) TCGA-3G-AB0T-01 12 121756196 121756196 G A ANAPC5 Nonsense_Mutation p.R593* 0.10 TCGA-3G-AB0T-01 12 56638574 56638574 G A ANKRD52 Missense_Mutation p.L862F 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-3G-AB0T-01 16 1306554 1306554 G A TPSD1 Silent p.G40G 0.09 TCGA-3G-AB0T-01 16 2017407 2017407 C T RNF151 Missense_Mutation p.R46W 0.22 deleterious(0) possibly_damaging(0.773) TCGA-3G-AB0T-01 16 64981359 64981359 G A CDH11 3'UTR 0.14 TCGA-3G-AB0T-01 17 1840414 1840414 C T RTN4RL1 Silent p.S234S 0.10 TCGA-3G-AB0T-01 19 4652152 4652152 C T TNFAIP8L1 Missense_Mutation p.R91C 0.10 deleterious(0) possibly_damaging(0.774) TCGA-3G-AB0T-01 1 240421266 240421266 A G FMN2 Missense_Mutation p.K1363E 0.09 probably_damaging(0.991) TCGA-3G-AB0T-01 1 38488445 38488445 T G UTP11L Silent p.V214V 0.10 TCGA-3G-AB0T-01 21 35477334 35477334 T G SLC5A3 3'UTR 0.12 TCGA-3G-AB0T-01 22 38155194 38155194 C A TRIOBP Missense_Mutation p.R2083S 0.15 deleterious(0) probably_damaging(0.994) TCGA-3G-AB0T-01 4 154256963 154256963 C T TRIM2 3'UTR 0.17 TCGA-3G-AB0T-01 5 171520785 171520785 G A STK10 Silent p.V395V 0.10 TCGA-3G-AB0T-01 5 1879783 1879783 T A IRX4 Missense_Mutation p.T191S 0.14 deleterious(0) probably_damaging(0.999) TCGA-3G-AB0T-01 6 27806118 27806118 G A HIST1H2BN 5'Flank 0.17 TCGA-3G-AB0T-01 6 57255004 57255004 A T PRIM2 Intron 0.12 TCGA-3G-AB0T-01 7 128480707 128480707 G C FLNC Missense_Mutation p.G552A 0.06 tolerated(0.15) possibly_damaging(0.756) TCGA-3G-AB0T-01 7 149419583 149419583 C T KRBA1 Silent p.P179P 0.06 TCGA-3G-AB0T-01 8 10464577 10464577 T C RP1L1 Missense_Mutation p.Y2344C 0.09 unknown(0) TCGA-3G-AB0T-01 8 134060111 134060111 C T SLA Missense_Mutation p.G146S 0.12 deleterious(0) probably_damaging(0.964) TCGA-3G-AB0T-01 9 91618062 91618062 G A S1PR3 3'UTR 0.22 TCGA-3G-AB0T-01 X 30254169 30254169 C T MAGEB3 Missense_Mutation p.P43L 0.06 deleterious(0.04) benign(0.216) TCGA-3G-AB0T-01 X 92928494 92928494 G C NAP1L3 5'UTR 0.35 TCGA-3G-AB14-01 10 61932688 61932688 C T ANK3 Silent p.Q784Q 0.14 TCGA-3G-AB14-01 11 111708233 111708233 T C ALG9 Missense_Mutation p.K306R 0.24 deleterious(0.02) possibly_damaging(0.662) TCGA-3G-AB14-01 11 43283299 43283299 A G HNRNPKP3 RNA 0.31 TCGA-3G-AB14-01 11 60689889 60689889 C T TMEM109 3'UTR 0.08 TCGA-3G-AB14-01 12 48134011 48134011 G A RAPGEF3 Intron 0.09 TCGA-3G-AB14-01 13 21374437 21374437 C T XPO4 Missense_Mutation p.G669R 0.28 deleterious(0) probably_damaging(0.995) TCGA-3G-AB14-01 14 58893879 58893879 A T TIMM9 5'UTR 0.26 TCGA-3G-AB14-01 14 94741717 94741717 C T PPP4R4 Missense_Mutation p.S819L 0.26 tolerated_low_confidence(0.07) benign(0.015) TCGA-3G-AB14-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.11 TCGA-3G-AB14-01 17 40315798 40315798 G - KCNH4 Frame_Shift_Del p.P768Hfs*60 0.13 TCGA-3G-AB14-01 17 60072571 60072571 A G MED13 Missense_Mutation p.L708P 0.08 tolerated(0.16) benign(0.001) TCGA-3G-AB14-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.24 deleterious(0) probably_damaging(1) TCGA-3G-AB14-01 18 15316476 15316476 C A RNU6-721P 3'Flank 0.21 TCGA-3G-AB14-01 1 1163947 1163947 C T SDF4 Missense_Mutation p.G76D 0.08 tolerated(1) benign(0) TCGA-3G-AB14-01 1 186413381 186413381 G A PDC Silent p.C157C 0.08 TCGA-3G-AB14-01 2 236792009 236792009 T A AGAP1 Missense_Mutation p.S357R 0.08 deleterious(0) probably_damaging(0.999) TCGA-3G-AB14-01 2 44547365 44547365 T C SLC3A1 Silent p.L549L 0.08 TCGA-3G-AB14-01 2 46611907 46611907 A G EPAS1 3'UTR 0.23 TCGA-3G-AB14-01 4 1945957 1945957 C T WHSC1 Intron 0.20 TCGA-3G-AB14-01 4 79188536 79188536 G C FRAS1 Missense_Mutation p.G311R 0.20 probably_damaging(0.986) TCGA-3G-AB14-01 6 73110709 73110709 A G RIMS1 3'Flank 0.18 TCGA-3G-AB14-01 7 96747041 96747041 G A ACN9 Silent p.P2P 0.22 TCGA-3G-AB14-01 8 57075965 57075965 T C PLAG1 3'UTR 0.22 TCGA-3G-AB14-01 8 74333642 74333642 C T STAU2 Missense_Mutation p.A560T 0.19 tolerated_low_confidence(0.28) benign(0.003) TCGA-3G-AB14-01 X 48886939 48886939 C T TFE3 3'UTR 0.11 TCGA-3G-AB14-01 X 70468142 70468142 G T ZMYM3 Nonsense_Mutation p.C615* 0.53 TCGA-3G-AB14-01 X 92928356 92928356 A - NAP1L3 5'UTR 0.24 TCGA-3G-AB19-01 10 50151484 50151484 A T WDFY4 Missense_Mutation p.Y2580F 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-3G-AB19-01 11 3661054 3661057 AGAG - ART5 Frame_Shift_Del p.S201* 0.20 TCGA-3G-AB19-01 11 533553 533553 T C HRAS Missense_Mutation p.K117R 0.26 deleterious(0) probably_damaging(0.979) TCGA-3G-AB19-01 12 110989715 110989715 T A PPTC7 Silent p.S94S 0.35 TCGA-3G-AB19-01 12 3120212 3120212 G A TEAD4 Missense_Mutation p.G90E 0.36 deleterious(0) probably_damaging(0.997) TCGA-3G-AB19-01 13 78337377 78337377 A G SLAIN1 3'UTR 0.06 TCGA-3G-AB19-01 14 64914971 64914979 AAGAAACAA - MTHFD1 In_Frame_Del p.K739_Q741del 0.29 TCGA-3G-AB19-01 15 48551475 48551475 C T SLC12A1 Silent p.N707N 0.38 TCGA-3G-AB19-01 16 19584459 19584459 C T C16orf62 Missense_Mutation p.R191C 0.33 deleterious(0.02) possibly_damaging(0.653) TCGA-3G-AB19-01 16 81080489 81080489 T G ATMIN 3'UTR 0.38 TCGA-3G-AB19-01 17 7340182 7340182 G A TMEM102 Missense_Mutation p.R295H 0.25 deleterious(0.01) probably_damaging(1) TCGA-3G-AB19-01 17 73612477 73612477 A T MYO15B 3'Flank 0.14 TCGA-3G-AB19-01 17 79767744 79767744 G T GCGR Silent p.L49L 0.16 TCGA-3G-AB19-01 18 44579418 44579418 G C KATNAL2 Splice_Site p.X25_splice 0.08 TCGA-3G-AB19-01 18 77710752 77710753 - CAG PQLC1 In_Frame_Ins p.L58dup 0.42 TCGA-3G-AB19-01 19 43032492 43032492 C T CEACAM1 Missense_Mutation p.R12H 0.16 tolerated(0.54) benign(0.016) TCGA-3G-AB19-01 1 52929423 52929423 G C ZCCHC11 Intron 0.43 TCGA-3G-AB19-01 1 62190776 62190776 G C TM2D1 Missense_Mutation p.P68R 0.44 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-3G-AB19-01 20 61389709 61389709 G A NTSR1 Splice_Site p.X336_splice 0.20 TCGA-3G-AB19-01 2 140990446 140990446 G A LRP1B 3'UTR 0.33 TCGA-3G-AB19-01 2 197172675 197172675 C T HECW2 Missense_Mutation p.E857K 0.32 deleterious(0) benign(0.434) TCGA-3G-AB19-01 2 204298785 204298785 A C ABI2 3'Flank 0.41 TCGA-3G-AB19-01 2 26204457 26204457 G C KIF3C Silent p.T110T 0.41 TCGA-3G-AB19-01 2 26533877 26533877 G T GPR113 Missense_Mutation p.P907T 0.33 deleterious(0) probably_damaging(1) TCGA-3G-AB19-01 2 31360983 31360983 C T GALNT14 5'UTR 0.48 TCGA-3G-AB19-01 2 50847200 50847200 C A NRXN1 Missense_Mutation p.G467V 0.31 deleterious(0) probably_damaging(0.999) TCGA-3G-AB19-01 3 14528666 14528666 C A SLC6A6 3'UTR 0.07 TCGA-3G-AB19-01 3 42305079 42305079 G A CCK Missense_Mutation p.A15V 0.21 tolerated(0.15) benign(0.072) TCGA-3G-AB19-01 3 65340570 65340570 C T MAGI1 3'Flank 0.23 TCGA-3G-AB19-01 5 179079103 179079103 C T AC136604.1 Missense_Mutation p.R196C 0.08 tolerated(0.09) benign(0.056) TCGA-3G-AB19-01 5 70763245 70763245 G A BDP1 Missense_Mutation p.E284K 0.41 deleterious(0) probably_damaging(0.999) TCGA-3G-AB19-01 6 31850563 31850563 C A EHMT2 Splice_Site p.X1037_splice 0.35 TCGA-3G-AB19-01 6 36455110 36455110 C T KCTD20 3'UTR 0.20 TCGA-3G-AB19-01 7 28865448 28865448 T C CREB5 3'UTR 0.41 TCGA-3G-AB19-01 7 36462270 36462270 A G ANLN Silent p.E776E 0.13 TCGA-3G-AB19-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.33 deleterious(0.05) probably_damaging(0.992) TCGA-3G-AB19-01 7 99084796 99084796 C G ZNF789 Silent p.A321A 0.41 TCGA-3G-AB19-01 8 104948818 104948818 A G RIMS2 Silent p.T805T 0.37 TCGA-3G-AB19-01 X 109699121 109699121 C T RGAG1 3'UTR 0.39 TCGA-3G-AB19-01 X 55046772 55046772 G T ALAS2 Silent p.T268T 0.26 TCGA-3G-AB19-01 X 90691713 90691713 G T PABPC5 Missense_Mutation p.R379S 0.42 deleterious_low_confidence(0) benign(0.057) TCGA-3Q-A9WF-01 10 95719985 95719985 C T PIPSL RNA 0.05 TCGA-3Q-A9WF-01 11 69625398 69625398 C T FGF3 Missense_Mutation p.R132Q 0.06 tolerated(0.17) probably_damaging(0.973) TCGA-3Q-A9WF-01 11 94134408 94134408 G A GPR83 Silent p.V2V 0.24 TCGA-3Q-A9WF-01 19 1799778 1799778 A T ATP8B3 Intron 0.15 TCGA-3Q-A9WF-01 19 2214116 2214116 G A DOT1L Intron 0.11 TCGA-3Q-A9WF-01 19 43257470 43257470 C T PSG8 3'Flank 0.10 TCGA-3Q-A9WF-01 20 33328552 33328552 T C NCOA6 Silent p.T1836T 0.05 TCGA-3Q-A9WF-01 21 40195547 40195549 TTG - ETS2 3'UTR 0.10 TCGA-3Q-A9WF-01 2 11357229 11357229 C G ROCK2 Missense_Mutation p.E467Q 0.04 tolerated(0.11) benign(0.031) TCGA-3Q-A9WF-01 3 129695751 129695751 T C TRH Missense_Mutation p.S141P 0.08 deleterious(0.03) benign(0.2) TCGA-3Q-A9WF-01 3 156865874 156865874 T C CCNL1 3'UTR 0.07 TCGA-3Q-A9WF-01 8 145749512 145749512 G T LRRC24 Missense_Mutation p.Q197K 0.16 tolerated(0.09) benign(0.1) TCGA-3Q-A9WF-01 X 115585593 115585593 C T SLC6A14 Silent p.L463L 0.10 TCGA-3Q-A9WF-01 X 20159743 20159743 C T EIF1AX Missense_Mutation p.G6S 0.07 deleterious(0.03) unknown(0) TCGA-3S-A8YW-01 10 28233763 28233763 G A ARMC4 Silent p.T505T 0.28 TCGA-3S-A8YW-01 11 28106202 28106202 G A KIF18A Missense_Mutation p.R351W 0.41 deleterious(0) probably_damaging(1) TCGA-3S-A8YW-01 11 66327493 66327493 C T CTSF 3'Flank 0.27 TCGA-3S-A8YW-01 12 104381108 104381108 C T TDG 3'UTR 0.12 TCGA-3S-A8YW-01 12 113733834 113733834 G A TPCN1 Missense_Mutation p.A874T 0.34 tolerated(0.74) unknown(0) TCGA-3S-A8YW-01 12 113733835 113733835 C T TPCN1 Missense_Mutation p.A874V 0.35 tolerated(0.17) unknown(0) TCGA-3S-A8YW-01 12 124408355 124408355 T A DNAH10 Missense_Mutation p.I3733N 0.11 possibly_damaging(0.535) TCGA-3S-A8YW-01 12 13715760 13715760 C G GRIN2B Missense_Mutation p.G1471A 0.07 tolerated(0.69) probably_damaging(0.999) TCGA-3S-A8YW-01 12 5603798 5603798 G A NTF3 Missense_Mutation p.A153T 0.26 tolerated(0.14) probably_damaging(0.959) TCGA-3S-A8YW-01 12 8051634 8051634 C T NANOGP1 RNA 0.16 TCGA-3S-A8YW-01 12 8926806 8926806 A T RIMKLB 3'UTR 0.75 TCGA-3S-A8YW-01 12 97137878 97137878 C G C12orf55 Missense_Mutation p.I2546M 0.04 deleterious(0.01) benign(0.004) TCGA-3S-A8YW-01 14 105269415 105269415 G T ZBTB42 3'UTR 0.42 TCGA-3S-A8YW-01 14 20926167 20926167 A G TMEM55B 3'UTR 0.73 TCGA-3S-A8YW-01 14 45433576 45433576 G T FAM179B Missense_Mutation p.S651I 0.20 deleterious(0) probably_damaging(0.999) TCGA-3S-A8YW-01 15 25924583 25924583 G A ATP10A Missense_Mutation p.R1469C 0.24 tolerated_low_confidence(0.11) benign(0.238) TCGA-3S-A8YW-01 15 28263684 28263684 G A OCA2 Silent p.H222H 0.15 TCGA-3S-A8YW-01 17 37881427 37881427 C T ERBB2 Silent p.D873D 0.28 TCGA-3S-A8YW-01 17 56663351 56663351 C T TEX14 Missense_Mutation p.A967T 0.56 tolerated(0.15) benign(0.08) TCGA-3S-A8YW-01 17 7577096 7577096 T - TP53 Frame_Shift_Del p.D281Afs*64 0.47 TCGA-3S-A8YW-01 18 29045307 29045307 G C DSG3 Missense_Mutation p.G433A 0.08 tolerated(0.53) possibly_damaging(0.871) TCGA-3S-A8YW-01 18 29706742 29706742 A G RNF138 Silent p.Q216Q 0.19 TCGA-3S-A8YW-01 18 9536113 9536113 C T RALBP1 3'UTR 0.65 TCGA-3S-A8YW-01 19 10678072 10678072 C T CDKN2D Missense_Mutation p.A55T 0.16 tolerated(0.56) benign(0.001) TCGA-3S-A8YW-01 19 23329318 23329318 G A ZNF730 Missense_Mutation p.R491Q 0.57 tolerated(1) benign(0.001) TCGA-3S-A8YW-01 19 35849879 35849879 C T FFAR3 Silent p.L29L 0.14 TCGA-3S-A8YW-01 19 39075660 39075660 C T RYR1 Silent p.D4908D 0.37 TCGA-3S-A8YW-01 1 145442120 145442120 T A TXNIP 3'UTR 0.28 TCGA-3S-A8YW-01 1 151254154 151254154 A G ZNF687 5'Flank 0.21 TCGA-3S-A8YW-01 1 154171892 154171892 T G C1orf189 3'UTR 0.47 TCGA-3S-A8YW-01 1 175372743 175372743 T C TNR Missense_Mutation p.D170G 0.43 tolerated(0.06) benign(0.354) TCGA-3S-A8YW-01 1 203097455 203097455 G A ADORA1 Intron 0.06 TCGA-3S-A8YW-01 1 6520514 6520514 C A ESPN 3'UTR 0.47 TCGA-3S-A8YW-01 1 89250347 89250347 C T PKN2 Silent p.G337G 0.34 TCGA-3S-A8YW-01 20 13753210 13753210 C T ESF1 Missense_Mutation p.G401R 0.26 deleterious(0) probably_damaging(0.92) TCGA-3S-A8YW-01 20 60895897 60895897 G A LAMA5 Silent p.G2182G 0.45 TCGA-3S-A8YW-01 3 12944297 12944297 C T IQSEC1 Silent p.A941A 0.26 TCGA-3S-A8YW-01 3 48474247 48474247 C G CCDC51 Missense_Mutation p.L269F 0.33 deleterious(0.04) benign(0.196) TCGA-3S-A8YW-01 4 120986968 120986968 C T MAD2L1 Missense_Mutation p.G27S 0.26 tolerated(0.73) possibly_damaging(0.684) TCGA-3S-A8YW-01 4 15689810 15689810 G C FAM200B Missense_Mutation p.E404Q 0.18 deleterious(0.04) probably_damaging(0.994) TCGA-3S-A8YW-01 4 173942726 173942726 C T GALNTL6 Missense_Mutation p.L530F 0.21 deleterious(0.01) possibly_damaging(0.519) TCGA-3S-A8YW-01 6 111726735 111726735 T C REV3L Missense_Mutation p.N168S 0.26 deleterious(0.02) possibly_damaging(0.863) TCGA-3S-A8YW-01 6 52344482 52344482 T C EFHC1 Silent p.L513L 0.39 TCGA-3S-A8YW-01 6 85453986 85453986 G A TBX18 Missense_Mutation p.R333C 0.32 deleterious(0) possibly_damaging(0.548) TCGA-3S-A8YW-01 6 87994415 87994415 G C GJB7 Silent p.S72S 0.32 TCGA-3S-A8YW-01 7 107601991 107601991 G A LAMB1 Intron 0.12 TCGA-3S-A8YW-01 7 24727232 24727232 G C MPP6 Nonstop_Mutation p.*541Sext*1 0.20 TCGA-3S-A8YW-01 7 5983557 5983557 C T RSPH10B Missense_Mutation p.A532T 0.28 deleterious(0) probably_damaging(0.967) TCGA-3S-A8YW-01 7 927107 927107 G T GET4 Missense_Mutation p.K139N 0.43 tolerated(0.09) possibly_damaging(0.58) TCGA-3S-A8YW-01 8 100403828 100403828 G C VPS13B Missense_Mutation p.R993T 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-3S-A8YW-01 8 16026357 16026357 C T MSR1 Silent p.T80T 0.57 TCGA-3S-A8YW-01 8 95262574 95262574 G T GEM Silent p.L285L 0.22 TCGA-3S-A8YW-01 9 102784465 102784465 G T ERP44 Silent p.L110L 0.85 TCGA-3S-A8YW-01 9 136340576 136340576 C T SLC2A6 Silent p.T240T 0.28 TCGA-3S-A8YW-01 9 139616628 139616628 G C FAM69B Missense_Mutation p.E120Q 0.47 tolerated(0.12) benign(0.015) TCGA-3S-A8YW-01 X 31986629 31986629 T G DMD Missense_Mutation p.E2147D 0.56 benign(0.388) TCGA-3S-AAYX-01 10 33190229 33190229 T G ITGB1 3'UTR 0.23 TCGA-3S-AAYX-01 11 18159791 18159791 T A MRGPRX3 3'UTR 0.11 TCGA-3S-AAYX-01 11 65388375 65388375 C T PCNXL3 Nonsense_Mutation p.Q725* 0.08 TCGA-3S-AAYX-01 17 2288150 2288150 G T MNT 3'UTR 0.16 TCGA-3S-AAYX-01 17 48262814 48262814 G T COL1A1 3'UTR 0.24 TCGA-3S-AAYX-01 17 76887681 76887681 T - DDC8 Frame_Shift_Del p.E302Gfs*4 0.16 TCGA-3S-AAYX-01 19 51581275 51581275 G A KLK14 Missense_Mutation p.R265W 0.15 deleterious(0.01) benign(0.049) TCGA-3S-AAYX-01 1 155029803 155029803 G T ADAM15 Nonsense_Mutation p.E430* 0.17 TCGA-3S-AAYX-01 1 24019235 24019235 C G RPL11 Missense_Mutation p.P48R 0.10 deleterious(0.02) probably_damaging(0.95) TCGA-3S-AAYX-01 1 65693159 65693159 A G AK4 3'UTR 0.05 TCGA-3S-AAYX-01 20 39793654 39793654 G - PLCG1 Frame_Shift_Del p.D435Tfs*45 0.15 TCGA-3S-AAYX-01 2 208992938 208992938 C A CRYGC Missense_Mutation p.D172Y 0.06 deleterious(0) possibly_damaging(0.904) TCGA-3S-AAYX-01 3 52437891 52437891 C A BAP1 Missense_Mutation p.G424W 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.497) TCGA-3S-AAYX-01 5 114547535 114547535 C T PGGT1B 3'UTR 0.07 TCGA-3S-AAYX-01 8 130777968 130777968 G A GSDMC Missense_Mutation p.T159I 0.09 deleterious(0) probably_damaging(1) TCGA-3S-AAYX-01 8 35579805 35579805 G T UNC5D Missense_Mutation p.G399C 0.15 deleterious(0.01) possibly_damaging(0.847) TCGA-3S-AAYX-01 8 61749402 61749402 G A CHD7 Missense_Mutation p.R1339Q 0.08 probably_damaging(0.996) TCGA-3S-AAYX-01 9 123171448 123171448 G A CDK5RAP2 Nonsense_Mutation p.Q1521* 0.18 TCGA-3S-AAYX-01 9 137735464 137735464 C T COL5A1 3'UTR 0.09 TCGA-3S-AAYX-01 X 129148811 129148811 T C BCORL1 Missense_Mutation p.V688A 0.18 probably_damaging(0.996) TCGA-3T-AA9L-01 12 28114908 28114908 T C PTHLH Intron 0.17 TCGA-3T-AA9L-01 12 52388028 52388028 C T ACVR1B 3'Flank 0.12 TCGA-3T-AA9L-01 12 91539929 91539929 A G DCN Missense_Mutation p.L329P 0.05 deleterious(0) probably_damaging(1) TCGA-3T-AA9L-01 14 77732685 77732685 C T NGB 3'UTR 0.11 TCGA-3T-AA9L-01 15 79606303 79606303 C T TMED3 Missense_Mutation p.P125S 0.13 deleterious(0.03) benign(0.349) TCGA-3T-AA9L-01 16 30567333 30567333 G A ZNF764 Missense_Mutation p.P137S 0.10 tolerated(0.4) benign(0.157) TCGA-3T-AA9L-01 20 45354064 45354064 G A SLC2A10 Missense_Mutation p.R130Q 0.17 tolerated(0.06) possibly_damaging(0.595) TCGA-3T-AA9L-01 2 42490344 42490344 A G EML4 Missense_Mutation p.K180R 0.05 tolerated(1) benign(0.007) TCGA-3T-AA9L-01 4 108955568 108955568 C - HADH 3'UTR 0.10 TCGA-3T-AA9L-01 5 149676817 149676817 A - ARSI Frame_Shift_Del p.F557Sfs*8 0.11 TCGA-4V-A9QI-01 12 26276043 26276043 A G BHLHE41 Silent p.F135F 0.06 TCGA-4V-A9QI-01 12 7361696 7361696 T C PEX5 Missense_Mutation p.L512P 0.05 deleterious(0) probably_damaging(0.985) TCGA-4V-A9QI-01 16 69184527 69184527 C T CIRH1A Nonsense_Mutation p.Q276* 0.11 TCGA-4V-A9QI-01 17 7482015 7482015 T C EIF4A1 3'UTR 0.16 TCGA-4V-A9QI-01 19 5785786 5785786 G A DUS3L Missense_Mutation p.P527S 0.14 deleterious(0) probably_damaging(1) TCGA-4V-A9QI-01 1 200522657 200522657 T C KIF14 Silent p.K1602K 0.09 TCGA-4V-A9QI-01 1 26793739 26793739 G A DHDDS Intron 0.07 TCGA-4V-A9QI-01 2 161350057 161350057 T A RBMS1 5'UTR 0.33 TCGA-4V-A9QI-01 2 31010027 31010027 T G CAPN13 Missense_Mutation p.K55N 0.07 deleterious(0.03) probably_damaging(0.954) TCGA-4V-A9QI-01 2 60684820 60684820 T C BCL11A 3'UTR 0.17 TCGA-4V-A9QI-01 3 64599165 64599165 T C ADAMTS9 Silent p.K1070K 0.06 TCGA-4V-A9QI-01 4 153896888 153896888 G - FHDC1 Frame_Shift_Del p.D817Tfs*44 0.11 TCGA-4V-A9QI-01 7 139575386 139575386 T - TBXAS1 Frame_Shift_Del p.W65Gfs*32 0.08 TCGA-4V-A9QI-01 9 124522247 124522247 C T DAB2IP Silent p.C205C 0.07 TCGA-4V-A9QI-01 9 32786692 32786692 T C TMEM215 3'UTR 0.07 TCGA-4V-A9QJ-01 11 22770737 22770737 C G GAS2 Missense_Mutation p.P182R 0.12 tolerated(0.29) benign(0.01) TCGA-4V-A9QJ-01 12 25679794 25679794 T C IFLTD1 Missense_Mutation p.D196G 0.05 tolerated(0.19) benign(0.02) TCGA-4V-A9QJ-01 12 85547849 85547849 C T LRRIQ1 Missense_Mutation p.S1566L 0.04 deleterious(0.02) probably_damaging(0.913) TCGA-4V-A9QJ-01 12 88381705 88381705 T C C12orf50 Missense_Mutation p.T247A 0.08 tolerated(0.1) benign(0.057) TCGA-4V-A9QJ-01 14 22475770 22475770 A G TRAV19 5'UTR 0.18 TCGA-4V-A9QJ-01 14 26916117 26916117 G C NOVA1 3'UTR 0.11 TCGA-4V-A9QJ-01 14 35262030 35262030 T C BAZ1A Silent p.E487E 0.04 TCGA-4V-A9QJ-01 17 11757406 11757406 C A DNAH9 Silent p.P3198P 0.15 TCGA-4V-A9QJ-01 17 39974448 39974448 T A FKBP10 Missense_Mutation p.C167S 0.10 deleterious(0.02) possibly_damaging(0.72) TCGA-4V-A9QJ-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.11 deleterious(0) probably_damaging(1) TCGA-4V-A9QJ-01 18 61637367 61637367 G A SERPINB8 5'UTR 0.13 TCGA-4V-A9QJ-01 19 56206730 56206730 C A EPN1 3'UTR 0.09 TCGA-4V-A9QJ-01 1 153737191 153737191 C T INTS3 Missense_Mutation p.P651S 0.08 deleterious(0) probably_damaging(0.998) TCGA-4V-A9QJ-01 1 222919977 222919977 C T FAM177B Silent p.D30D 0.06 TCGA-4V-A9QJ-01 1 36941195 36941195 G C CSF3R Missense_Mutation p.I48M 0.09 deleterious(0) probably_damaging(0.931) TCGA-4V-A9QJ-01 1 6281478 6281478 A G ICMT 3'UTR 0.09 TCGA-4V-A9QJ-01 1 70727958 70727958 C A ANKRD13C 3'UTR 0.05 TCGA-4V-A9QJ-01 1 70727959 70727959 T C ANKRD13C 3'UTR 0.05 TCGA-4V-A9QJ-01 20 30918006 30918006 T C KIF3B Silent p.G677G 0.09 TCGA-4V-A9QJ-01 20 34288902 34288905 AGTC - ROMO1 3'UTR 0.23 TCGA-4V-A9QJ-01 2 162061189 162061189 A G TANK Missense_Mutation p.N71S 0.06 tolerated(0.26) benign(0.005) TCGA-4V-A9QJ-01 2 178085398 178085398 C T HNRNPA3 3'Flank 0.08 TCGA-4V-A9QJ-01 2 216214258 216214258 G C ATIC Splice_Site p.X554_splice 0.06 TCGA-4V-A9QJ-01 2 216214316 216214316 G C ATIC Missense_Mutation p.E573Q 0.05 tolerated(0.1) benign(0.002) TCGA-4V-A9QJ-01 2 219418407 219418407 C T USP37 Missense_Mutation p.G66E 0.06 tolerated(0.15) benign(0.13) TCGA-4V-A9QJ-01 3 105404243 105404243 C T CBLB Missense_Mutation p.E708K 0.05 deleterious_low_confidence(0) benign(0.395) TCGA-4V-A9QJ-01 5 122951098 122951098 A - CSNK1G3 3'UTR 0.09 TCGA-4V-A9QJ-01 5 140257258 140257258 C T PCDHA12 Missense_Mutation p.P734L 0.10 deleterious_low_confidence(0.05) benign(0.055) TCGA-4V-A9QJ-01 6 150039182 150039182 G A LATS1 5'UTR 0.21 TCGA-4V-A9QJ-01 6 76640722 76640725 CACA G IMPG1 In_Frame_Del p.C730_G731delinsR 0.13 TCGA-4V-A9QJ-01 7 100551571 100551571 C T MUC3A Missense_Mutation p.L108F 0.06 tolerated(0.06) possibly_damaging(0.86) TCGA-4V-A9QJ-01 8 118817076 118817076 T C EXT1 Missense_Mutation p.D647G 0.09 deleterious(0.01) possibly_damaging(0.602) TCGA-4V-A9QJ-01 9 14084164 14084164 G C NFIB 3'Flank 0.30 TCGA-4V-A9QJ-01 9 34621494 34621494 G A ARID3C Silent p.P400P 0.08 TCGA-4V-A9QJ-01 9 6500640 6500640 T G UHRF2 Missense_Mutation p.H698Q 0.17 tolerated(0.53) benign(0.001) TCGA-4V-A9QJ-01 X 107037825 107037825 C T NCBP2L Silent p.R125R 0.12 TCGA-4V-A9QJ-01 X 127185536 127185536 T A ACTRT1 Missense_Mutation p.E217V 0.08 deleterious(0.01) benign(0.078) TCGA-4V-A9QJ-01 X 130413295 130413295 G C IGSF1 Missense_Mutation p.T556R 0.10 tolerated(0.28) probably_damaging(0.956) TCGA-4V-A9QL-01 11 126136712 126136712 C T SRPR Missense_Mutation p.R211H 0.09 tolerated(0.11) possibly_damaging(0.575) TCGA-4V-A9QL-01 11 8462251 8462251 C T STK33 Nonsense_Mutation p.W307* 0.04 TCGA-4V-A9QL-01 12 122612492 122612492 G A MLXIP Missense_Mutation p.V195I 0.13 tolerated(0.09) possibly_damaging(0.783) TCGA-4V-A9QL-01 13 45008240 45008240 T C TSC22D1 3'UTR 0.15 TCGA-4V-A9QL-01 15 49034207 49034207 C T CEP152 Missense_Mutation p.R1309Q 0.05 tolerated(0.06) possibly_damaging(0.56) TCGA-4V-A9QL-01 15 73617504 73617504 C A HCN4 Silent p.V590V 0.22 TCGA-4V-A9QL-01 15 90348671 90348671 T A ANPEP Missense_Mutation p.Q213L 0.14 deleterious(0) possibly_damaging(0.905) TCGA-4V-A9QL-01 16 74306 74306 G A WASH4P 5'Flank 0.22 TCGA-4V-A9QL-01 17 43515191 43515191 C A PLEKHM1 3'UTR 0.09 TCGA-4V-A9QL-01 1 197127005 197127042 CACAAGGGCTGGGCTAGACTTTACAGTTTACACACACA TCACAAGGGCTGGGCTAGACTTTACAGTTTACACACAC ZBTB41 3'UTR 0.09 TCGA-4V-A9QL-01 20 47874155 47874155 C A ZNFX1 Silent p.S821S 0.29 TCGA-4V-A9QL-01 20 56939127 56939127 A G RAB22A 3'UTR 0.07 TCGA-4V-A9QL-01 22 31331005 31331005 C G MORC2 Missense_Mutation p.K590N 0.25 tolerated(0.05) possibly_damaging(0.548) TCGA-4V-A9QL-01 2 27721159 27721159 G A GCKR Missense_Mutation p.G108D 0.07 deleterious(0.02) possibly_damaging(0.572) TCGA-4V-A9QL-01 5 101570300 101570300 A G SLCO4C1 3'UTR 0.09 TCGA-4V-A9QL-01 6 152424043 152424043 A T ESR1 3'UTR 0.05 TCGA-4V-A9QL-01 6 159692702 159692702 T - FNDC1 3'UTR 0.09 TCGA-4V-A9QL-01 6 160219248 160219248 A G MRPL18 3'UTR 0.15 TCGA-4V-A9QL-01 7 1525052 1525052 C T INTS1 Silent p.E1010E 0.17 TCGA-4V-A9QL-01 8 121219208 121219208 C T COL14A1 Missense_Mutation p.P356S 0.17 deleterious(0) probably_damaging(1) TCGA-4V-A9QL-01 8 68419098 68419098 C T CPA6 Missense_Mutation p.R187K 0.24 tolerated(1) benign(0.006) TCGA-4V-A9QL-01 9 139811066 139811066 C A TRAF2 Missense_Mutation p.T226K 0.09 tolerated(1) benign(0.005) TCGA-4V-A9QL-01 X 19017307 19017307 C G GPR64 Silent p.V807V 0.24 TCGA-4V-A9QM-01 10 96066442 96066442 C T PLCE1 Nonsense_Mutation p.R1961* 0.27 TCGA-4V-A9QM-01 13 88328904 88328904 A T SLITRK5 Missense_Mutation p.I421F 0.12 deleterious(0) probably_damaging(0.99) TCGA-4V-A9QM-01 14 23375467 23375467 G A RBM23 Missense_Mutation p.S113L 0.13 tolerated(0.16) benign(0.096) TCGA-4V-A9QM-01 16 27763207 27763207 C T KIAA0556 Missense_Mutation p.R1172W 0.19 deleterious(0) probably_damaging(0.999) TCGA-4V-A9QM-01 16 88786522 88786522 G A PIEZO1 Missense_Mutation p.A2040V 0.22 deleterious(0) possibly_damaging(0.672) TCGA-4V-A9QM-01 17 26087768 26087768 G A NOS2 Missense_Mutation p.A964V 0.06 tolerated(0.05) benign(0.014) TCGA-4V-A9QM-01 17 73164068 73164068 G T SUMO2 3'UTR 0.29 TCGA-4V-A9QM-01 19 14001021 14001021 C T C19orf57 Silent p.G216G 0.26 TCGA-4V-A9QM-01 19 39923871 39923871 A G RPS16 3'UTR 0.17 TCGA-4V-A9QM-01 19 49967938 49967938 G T ALDH16A1 Missense_Mutation p.C496F 0.27 tolerated(0.7) benign(0.001) TCGA-4V-A9QM-01 20 33433244 33433244 C T GGT7 Missense_Mutation p.V626M 0.29 deleterious(0) probably_damaging(0.987) TCGA-4V-A9QM-01 20 43379095 43379095 C T KCNK15 Silent p.G203G 0.19 TCGA-4V-A9QM-01 22 41521972 41521972 T C EP300 Silent p.T278T 0.19 TCGA-4V-A9QM-01 2 85999798 85999798 A G ATOH8 Intron 0.14 TCGA-4V-A9QM-01 3 183976104 183976104 G A ECE2 Intron 0.20 TCGA-4V-A9QM-01 4 88057161 88057161 T A AFF1 3'UTR 0.10 TCGA-4V-A9QM-01 5 114547535 114547535 C T PGGT1B 3'UTR 0.09 TCGA-4V-A9QM-01 6 71508379 71508379 A C SMAP1 Missense_Mutation p.K172T 0.18 tolerated(0.06) benign(0.027) TCGA-4V-A9QM-01 7 150217209 150217209 A G GIMAP7 Silent p.K49K 0.05 TCGA-4V-A9QM-01 7 97822349 97822349 A T LMTK2 Missense_Mutation p.I858F 0.13 tolerated(0.73) benign(0.042) TCGA-4V-A9QM-01 8 86573068 86573068 G A REXO1L1P 3'UTR 0.21 TCGA-4V-A9QM-01 9 21815456 21815456 C G MTAP Missense_Mutation p.L20V 0.28 deleterious(0.02) benign(0.423) TCGA-4V-A9QN-01 10 13213061 13213061 C T MCM10 Silent p.D49D 0.09 TCGA-4V-A9QN-01 10 70102084 70102084 A G HNRNPH3 3'UTR 0.41 TCGA-4V-A9QN-01 13 24471170 24471170 G A C1QTNF9B 5'UTR 0.10 TCGA-4V-A9QN-01 15 96875650 96875650 A C NR2F2 Missense_Mutation p.S106R 0.41 deleterious(0) possibly_damaging(0.597) TCGA-4V-A9QN-01 17 29422127 29422127 C T NF1 5'UTR 0.05 TCGA-4V-A9QN-01 18 61653512 61653512 G T SERPINB8 Intron 0.19 TCGA-4V-A9QN-01 19 55175881 55175881 C A LILRB4 Silent p.G200G 0.07 TCGA-4V-A9QN-01 1 143664135 143664136 - ACG RP6-206I17.1 RNA 0.09 TCGA-4V-A9QN-01 1 175129943 175129943 C T KIAA0040 Silent p.K69K 0.06 TCGA-4V-A9QN-01 1 2124334 2124334 C A C1orf86 Intron 0.92 TCGA-4V-A9QN-01 2 120252063 120252063 C A SCTR Missense_Mutation p.C45F 0.15 deleterious(0) probably_damaging(0.999) TCGA-4V-A9QN-01 2 121745912 121745912 A G GLI2 Missense_Mutation p.S808G 0.56 deleterious(0.01) probably_damaging(0.952) TCGA-4V-A9QN-01 2 61706054 61706054 T C XPO1 Silent p.E1039E 0.57 TCGA-4V-A9QN-01 4 74124012 74124017 TCGTCG - ANKRD17 In_Frame_Del p.D123_D124del 0.49 TCGA-4V-A9QN-01 5 112770143 112770143 C T TSSK1B Missense_Mutation p.V132I 0.37 tolerated(1) benign(0.02) TCGA-4V-A9QN-01 6 36930927 36930927 C T PI16 Missense_Mutation p.T270M 0.78 deleterious(0.04) benign(0.1) TCGA-4V-A9QN-01 6 37631804 37631804 G T MDGA1 Missense_Mutation p.T49N 0.16 tolerated(0.18) probably_damaging(0.998) TCGA-4V-A9QN-01 7 97937592 97937592 G A BAIAP2L1 Intron 0.09 TCGA-4V-A9QN-01 9 114981237 114981238 - T PTBP3 3'UTR 0.29 TCGA-4V-A9QN-01 9 2717989 2717989 G A KCNV2 Missense_Mutation p.A84T 0.56 tolerated(0.49) benign(0.001) TCGA-4V-A9QN-01 X 73815627 73815647 AATATATGTAAGCATACCTGG CAT RLIM Splice_Site p.X56_splice 0.26 TCGA-4V-A9QN-01 X 73815642 73815647 ACCTGG - RLIM Splice_Site p.X56_splice 0.14 TCGA-4V-A9QQ-01 10 75558068 75558068 G A ZSWIM8 Missense_Mutation p.A1345T 0.10 deleterious(0) probably_damaging(0.995) TCGA-4V-A9QQ-01 12 393307 393307 A T KDM5A 3'UTR 0.03 TCGA-4V-A9QQ-01 14 105246482 105246482 C T AKT1 Missense_Mutation p.E40K 0.12 tolerated(0.16) possibly_damaging(0.845) TCGA-4V-A9QQ-01 15 31668911 31668911 C T KLF13 3'UTR 0.17 TCGA-4V-A9QQ-01 15 64066941 64066941 G - HERC1 Frame_Shift_Del p.S295Afs*6 0.10 TCGA-4V-A9QQ-01 16 21156603 21156603 A T DNAH3 Nonsense_Mutation p.L116* 0.12 TCGA-4V-A9QQ-01 16 70099684 70099684 G A PDXDC2P RNA 0.17 TCGA-4V-A9QQ-01 17 36923652 36923652 T A PIP4K2B 3'UTR 0.12 TCGA-4V-A9QQ-01 19 3122108 3122108 A G GNA11 3'UTR 0.11 TCGA-4V-A9QQ-01 1 111828435 111828435 C A CHIAP2 RNA 0.22 TCGA-4V-A9QQ-01 1 142713693 142713693 G A RP11-417J8.6 RNA 0.06 TCGA-4V-A9QQ-01 1 158636110 158636110 C T SPTA1 Missense_Mutation p.R739H 0.06 tolerated(1) benign(0.044) TCGA-4V-A9QQ-01 1 67390543 67390543 C T WDR78 5'UTR 0.07 TCGA-4V-A9QQ-01 20 57020778 57020778 A G VAPB 3'UTR 0.21 TCGA-4V-A9QQ-01 2 84915588 84915588 T C DNAH6 Missense_Mutation p.I2388T 0.08 tolerated(0.1) benign(0.003) TCGA-4V-A9QQ-01 3 105470353 105470353 C A CBLB Missense_Mutation p.D226Y 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-4V-A9QQ-01 3 129159128 129159128 G A IFT122 5'UTR 0.11 TCGA-4V-A9QQ-01 3 98298692 98298692 A T CPOX 3'UTR 0.07 TCGA-4V-A9QQ-01 4 2306458 2306458 C T ZFYVE28 Missense_Mutation p.A537T 0.13 tolerated_low_confidence(0.1) benign(0.002) TCGA-4V-A9QQ-01 5 176008370 176008370 C T CDHR2 Silent p.T615T 0.08 TCGA-4V-A9QQ-01 6 41898427 41898427 G A BYSL Missense_Mutation p.A209T 0.13 tolerated(0.45) benign(0.111) TCGA-4V-A9QQ-01 6 45515022 45515022 T C RUNX2 Missense_Mutation p.S516P 0.12 deleterious(0) probably_damaging(0.998) TCGA-4V-A9QQ-01 6 93952575 93952575 G C EPHA7 3'UTR 0.14 TCGA-4V-A9QQ-01 7 93540084 93540084 T C GNGT1 Intron 0.05 TCGA-4V-A9QQ-01 X 123182926 123182926 C A STAG2 Nonsense_Mutation p.Y297* 0.14 TCGA-4V-A9QQ-01 X 47774780 47774780 C T ZNF81 Silent p.F245F 0.09 TCGA-4V-A9QQ-01 X 48826352 48826352 C T KCND1 Silent p.E109E 0.09 TCGA-4V-A9QR-01 10 14909169 14909169 A G HSPA14 Missense_Mutation p.I361V 0.12 tolerated(0.23) benign(0.015) TCGA-4V-A9QR-01 10 75434061 75434061 C A AGAP5 3'UTR 0.05 TCGA-4V-A9QR-01 10 92508880 92508880 G A HTR7 Silent p.T337T 0.10 TCGA-4V-A9QR-01 10 96443687 96443687 G A CYP2C18 Silent p.P37P 0.18 TCGA-4V-A9QR-01 11 2438977 2438977 A G TRPM5 Missense_Mutation p.I330T 0.12 deleterious(0.02) possibly_damaging(0.869) TCGA-4V-A9QR-01 11 70333178 70333178 C T SHANK2 Missense_Mutation p.V1075I 0.09 tolerated(0.21) benign(0.042) TCGA-4V-A9QR-01 12 39731002 39731002 G A KIF21A Missense_Mutation p.R772C 0.10 deleterious(0.03) benign(0.359) TCGA-4V-A9QR-01 13 38143937 38143937 C T POSTN Missense_Mutation p.R764K 0.16 tolerated_low_confidence(0.1) benign(0.206) TCGA-4V-A9QR-01 14 52456309 52456309 T G C14orf166 5'UTR 0.08 TCGA-4V-A9QR-01 15 89761830 89761830 G A RLBP1 Missense_Mutation p.P36L 0.21 tolerated(0.19) benign(0.004) TCGA-4V-A9QR-01 16 2088242 2088242 C G SLC9A3R2 3'UTR 0.07 TCGA-4V-A9QR-01 16 67322738 67322738 C T PLEKHG4 3'UTR 0.14 TCGA-4V-A9QR-01 17 1628569 1628569 G A WDR81 Missense_Mutation p.E106K 0.17 tolerated(0.11) possibly_damaging(0.877) TCGA-4V-A9QR-01 17 4843135 4843135 T C SLC25A11 Missense_Mutation p.K24R 0.12 tolerated(0.18) benign(0.029) TCGA-4V-A9QR-01 17 9471706 9471706 T C STX8 Silent p.K33K 0.06 TCGA-4V-A9QR-01 19 12221205 12221205 G A ZNF788 Missense_Mutation p.R50Q 0.09 deleterious(0.04) benign(0.003) TCGA-4V-A9QR-01 19 18679884 18679884 T C KXD1 3'UTR 0.21 TCGA-4V-A9QR-01 19 52496566 52496566 C T ZNF615 Missense_Mutation p.R599Q 0.09 tolerated(0.11) probably_damaging(0.955) TCGA-4V-A9QR-01 19 56565026 56565026 G A NLRP5 Missense_Mutation p.A1051T 0.19 tolerated(0.06) possibly_damaging(0.77) TCGA-4V-A9QR-01 1 109957976 109957976 T C PSMA5 Missense_Mutation p.T36A 0.12 deleterious(0.01) possibly_damaging(0.742) TCGA-4V-A9QR-01 1 152884310 152884310 T C IVL 3'UTR 0.17 TCGA-4V-A9QR-01 1 220363843 220363843 T C RAB3GAP2 Missense_Mutation p.K503E 0.15 tolerated(0.13) possibly_damaging(0.882) TCGA-4V-A9QR-01 1 94048442 94048442 T C BCAR3 Missense_Mutation p.T368A 0.05 tolerated(0.09) probably_damaging(0.996) TCGA-4V-A9QR-01 3 142773813 142773813 C T U2SURP Missense_Mutation p.P935S 0.12 tolerated(0.4) unknown(0) TCGA-4V-A9QR-01 7 63809328 63809328 C G ZNF736 Missense_Mutation p.H363D 0.11 deleterious(0) probably_damaging(0.998) TCGA-4V-A9QR-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.10 TCGA-4V-A9QR-01 X 19983216 19983216 C G CXorf23 Missense_Mutation p.R407T 0.16 deleterious(0.05) benign(0.274) TCGA-4V-A9QR-01 X 90689876 90689876 A T PABPC5 5'UTR 0.07 TCGA-4V-A9QS-01 11 111368767 111368767 C T BTG4 Silent p.P89P 0.05 TCGA-4V-A9QS-01 15 49170368 49170368 T C EID1 5'UTR 0.14 TCGA-4V-A9QS-01 15 63901274 63901274 G A HERC1 3'UTR 0.08 TCGA-4V-A9QS-01 16 75428996 75428996 G A CFDP1 Silent p.A214A 0.08 TCGA-4V-A9QS-01 19 1042383 1042383 C T ABCA7 Missense_Mutation p.S162L 0.07 tolerated(0.22) benign(0.005) TCGA-4V-A9QS-01 1 162469895 162469895 G T UHMK1 Missense_Mutation p.R140L 0.19 tolerated(0.08) possibly_damaging(0.823) TCGA-4V-A9QS-01 1 178821913 178821913 C A ANGPTL1 Missense_Mutation p.R398L 0.17 deleterious(0) probably_damaging(0.997) TCGA-4V-A9QS-01 1 207941138 207941138 A G CD46 Missense_Mutation p.T306A 0.09 tolerated(0.57) benign(0.001) TCGA-4V-A9QS-01 1 248569756 248569756 A G OR2T1 Missense_Mutation p.Y154C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-4V-A9QS-01 22 26224747 26224747 T C MYO18B Missense_Mutation p.F931L 0.06 tolerated(0.78) benign(0.03) TCGA-4V-A9QS-01 22 32923933 32923933 G A SYN3 Silent p.G430G 0.09 TCGA-4V-A9QS-01 4 94693450 94693450 G A GRID2 Missense_Mutation p.R942H 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4V-A9QS-01 5 123984491 123984491 C T ZNF608 Missense_Mutation p.S529N 0.07 tolerated(0.09) possibly_damaging(0.574) TCGA-4V-A9QS-01 5 77745855 77745863 TTGGTAAGT ATTGGTAAG SCAMP1 Splice_Site p.X244_splice 0.22 TCGA-4V-A9QS-01 6 34215466 34215466 C T C6orf1 5'UTR 0.08 TCGA-4V-A9QS-01 9 127284744 127284744 C A NR6A1 3'UTR 0.10 TCGA-4V-A9QS-01 X 103495090 103495090 G C ESX1 Missense_Mutation p.P347R 0.26 tolerated_low_confidence(0.05) unknown(0) TCGA-4V-A9QS-01 X 54099010 54099010 A C FAM120C 3'UTR 0.08 TCGA-4V-A9QT-01 17 18039989 18039989 T A MYO15A Missense_Mutation p.Y1590N 0.09 unknown(0) TCGA-4V-A9QT-01 17 20805650 20805650 C T RP11-344E13.3 RNA 0.06 TCGA-4V-A9QT-01 17 53398155 53398155 G A HLF Missense_Mutation p.R268H 0.10 deleterious(0) probably_damaging(0.999) TCGA-4V-A9QT-01 19 36352445 36352445 C T KIRREL2 Missense_Mutation p.P398S 0.07 deleterious(0) probably_damaging(0.921) TCGA-4V-A9QT-01 19 55869916 55869916 C T FAM71E2 Missense_Mutation p.E774K 0.07 tolerated(0.61) unknown(0) TCGA-4V-A9QT-01 1 86174042 86174042 C T ZNHIT6 5'UTR 0.10 TCGA-4V-A9QT-01 4 22517362 22517362 A G GPR125 Silent p.L16L 0.16 TCGA-4V-A9QT-01 6 4070123 4070123 A G FAM217A Missense_Mutation p.F112L 0.05 tolerated(0.25) benign(0.031) TCGA-4V-A9QT-01 8 42958916 42958916 G A POMK Silent p.E75E 0.14 TCGA-4V-A9QT-01 X 129199005 129199005 G A ELF4 3'UTR 0.07 TCGA-4V-A9QU-01 12 106461007 106461007 C T NUAK1 Missense_Mutation p.R520Q 0.17 tolerated(0.06) benign(0.32) TCGA-4V-A9QU-01 12 114804083 114804083 T C TBX5 Missense_Mutation p.Q290R 0.08 tolerated(0.11) probably_damaging(0.926) TCGA-4V-A9QU-01 14 21853645 21853645 C T CHD8 3'UTR 0.22 TCGA-4V-A9QU-01 14 23790525 23790525 C G PABPN1 5'UTR 0.07 TCGA-4V-A9QU-01 16 90048269 90048269 C A AFG3L1P RNA 0.10 TCGA-4V-A9QU-01 1 119425779 119425779 A G TBX15 3'UTR 0.04 TCGA-4V-A9QU-01 1 221054597 221054597 C G HLX Silent p.P218P 0.12 TCGA-4V-A9QU-01 22 19006724 19006724 A G DGCR9 RNA 0.06 TCGA-4V-A9QU-01 2 68694870 68694870 G C APLF Missense_Mutation p.G3R 0.16 tolerated(0.08) benign(0.091) TCGA-4V-A9QU-01 2 86406654 86406654 A T IMMT Missense_Mutation p.F71I 0.07 deleterious(0) probably_damaging(1) TCGA-4V-A9QU-01 4 56319855 56319855 G A CLOCK Silent p.H373H 0.05 TCGA-4V-A9QU-01 5 58284386 58284386 T C PDE4D Missense_Mutation p.I496V 0.05 deleterious_low_confidence(0.04) benign(0.051) TCGA-4V-A9QU-01 6 32015588 32015588 C T TNXB 5'Flank 0.17 TCGA-4V-A9QU-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.06 deleterious(0.05) probably_damaging(0.992) TCGA-4V-A9QU-01 8 144392257 144392257 G T TOP1MT Missense_Mutation p.P562T 0.21 deleterious(0) probably_damaging(1) TCGA-4V-A9QU-01 X 18842192 18842192 A G PPEF1 Silent p.K551K 0.04 TCGA-4V-A9QU-01 X 99941598 99941598 T C SYTL4 Intron 0.11 TCGA-4V-A9QW-01 12 112926930 112926930 C T PTPN11 Missense_Mutation p.A517V 0.06 deleterious(0) possibly_damaging(0.486) TCGA-4V-A9QW-01 12 4854682 4854682 A G GALNT8 Silent p.K316K 0.06 TCGA-4V-A9QW-01 12 49430924 49430924 G A KMT2D Silent p.S3405S 0.21 TCGA-4V-A9QW-01 16 417729 417729 C T MRPL28 Silent p.Q239Q 0.12 TCGA-4V-A9QW-01 17 47123348 47123348 G A IGF2BP1 Missense_Mutation p.A498T 0.12 tolerated(0.14) benign(0.172) TCGA-4V-A9QW-01 17 73872810 73872810 C T TRIM47 Missense_Mutation p.A254T 0.10 tolerated(0.11) benign(0.008) TCGA-4V-A9QW-01 18 28916466 28916466 T C DSG1 Silent p.F385F 0.08 TCGA-4V-A9QW-01 19 7677139 7677139 C T CAMSAP3 Missense_Mutation p.T614M 0.07 tolerated(0.1) benign(0.017) TCGA-4V-A9QW-01 1 203134442 203134442 G A ADORA1 Nonsense_Mutation p.W132* 0.08 TCGA-4V-A9QW-01 2 100065959 100065959 G A REV1 Silent p.S63S 0.07 TCGA-4V-A9QW-01 3 121416107 121416107 T C GOLGB1 Missense_Mutation p.K1088R 0.05 benign(0.16) TCGA-4V-A9QW-01 6 86387084 86387084 A G SNHG5 Intron 0.14 TCGA-4V-A9QW-01 7 111368448 111368448 G A DOCK4 Missense_Mutation p.P1928L 0.07 deleterious_low_confidence(0) benign(0.163) TCGA-4V-A9QW-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.08 deleterious(0.05) probably_damaging(0.992) TCGA-4V-A9QW-01 8 143562903 143562903 A G BAI1 Missense_Mutation p.Q654R 0.16 deleterious(0) benign(0.227) TCGA-4V-A9QW-01 X 34675133 34675133 C A TMEM47 Missense_Mutation p.G5V 0.17 tolerated_low_confidence(0.25) benign(0) TCGA-4V-A9QX-01 11 118034429 118034432 AGTC - SCN2B 3'UTR 0.50 TCGA-4V-A9QX-01 11 56184917 56184917 T C OR5R1 Silent p.S264S 0.08 TCGA-4V-A9QX-01 11 67414371 67414371 A G ACY3 Silent p.A48A 0.06 TCGA-4V-A9QX-01 11 74058312 74058312 G A PGM2L1 Nonsense_Mutation p.Q274* 0.09 TCGA-4V-A9QX-01 11 801503 801503 C T PIDD Missense_Mutation p.G475E 0.05 tolerated(0.05) benign(0.042) TCGA-4V-A9QX-01 15 78640266 78640266 C T CRABP1 Intron 0.15 TCGA-4V-A9QX-01 15 81578048 81578048 C T IL16 Silent p.D403D 0.12 TCGA-4V-A9QX-01 16 3024072 3024072 C T PKMYT1 Silent p.P413P 0.12 TCGA-4V-A9QX-01 16 89763495 89763495 C T SPATA2L 3'UTR 0.08 TCGA-4V-A9QX-01 17 61772747 61772748 AA - MAP3K3 3'UTR 0.09 TCGA-4V-A9QX-01 17 6381992 6381992 C T PITPNM3 Missense_Mutation p.A218T 0.14 deleterious(0) possibly_damaging(0.734) TCGA-4V-A9QX-01 19 42596394 42596394 C T POU2F2 Silent p.T409T 0.12 TCGA-4V-A9QX-01 1 2939191 2939191 G A ACTRT2 Missense_Mutation p.R314Q 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-4V-A9QX-01 1 41157241 41157241 C A NFYC 5'Flank 0.09 TCGA-4V-A9QX-01 1 914502 914502 C T C1orf170 Silent p.P542P 0.09 TCGA-4V-A9QX-01 20 34832739 34832739 C G AAR2 Missense_Mutation p.T293S 0.10 tolerated(0.62) benign(0.001) TCGA-4V-A9QX-01 22 46639568 46639568 T G PPARA 3'UTR 0.14 TCGA-4V-A9QX-01 2 207171599 207171599 T C ZDBF2 Missense_Mutation p.C783R 0.11 tolerated(0.09) possibly_damaging(0.761) TCGA-4V-A9QX-01 2 228883770 228883770 G A SPHKAP Silent p.P600P 0.12 TCGA-4V-A9QX-01 2 24469672 24469672 G C ITSN2 Missense_Mutation p.H1127D 0.08 tolerated(0.63) unknown(0) TCGA-4V-A9QX-01 2 32582265 32582265 T A BIRC6 Silent p.T12T 0.08 TCGA-4V-A9QX-01 3 100365535 100365535 C T GPR128 Silent p.R411R 0.06 TCGA-4V-A9QX-01 4 122766827 122766827 A G BBS7 Silent p.Y354Y 0.05 TCGA-4V-A9QX-01 5 121188452 121188452 C A FTMT 3'UTR 0.10 TCGA-4V-A9QX-01 6 27277316 27277316 G A POM121L2 Silent p.G878G 0.11 TCGA-4V-A9QX-01 6 72011263 72011263 C A OGFRL1 Missense_Mutation p.D289E 0.09 tolerated(0.83) possibly_damaging(0.53) TCGA-4V-A9QX-01 7 21906096 21906096 C T DNAH11 Silent p.A3842A 0.10 TCGA-4V-A9QX-01 7 2802325 2802325 G A GNA12 Intron 0.14 TCGA-4V-A9QX-01 8 144695460 144695460 A G TSTA3 Silent p.D272D 0.07 TCGA-4V-A9QX-01 8 28047290 28047290 G T ELP3 3'UTR 0.16 TCGA-4V-A9QX-01 8 81399772 81399772 A T ZBTB10 Missense_Mutation p.M243L 0.16 tolerated_low_confidence(1) benign(0) TCGA-4V-A9QX-01 X 142718489 142718489 T C SLITRK4 Missense_Mutation p.I146V 0.12 tolerated(0.12) probably_damaging(0.97) TCGA-4V-A9QX-01 X 53264219 53264219 G A IQSEC2 Missense_Mutation p.P1217S 0.09 deleterious_low_confidence(0.04) benign(0.296) TCGA-4V-A9QX-01 X 54099529 54099529 A G FAM120C Silent p.N1076N 0.13 TCGA-4X-A9F9-01 17 48618169 48618169 C T EPN3 Missense_Mutation p.T332I 0.08 deleterious(0.03) benign(0.064) TCGA-4X-A9F9-01 18 2913303 2913303 C T EMILIN2 Silent p.N1021N 0.10 TCGA-4X-A9F9-01 18 51855782 51855782 A T STARD6 Silent p.P138P 0.07 TCGA-4X-A9F9-01 19 6375579 6375579 C T PSPN Missense_Mutation p.C66Y 0.09 deleterious(0) probably_damaging(1) TCGA-4X-A9F9-01 3 10183586 10183586 G T VHL Missense_Mutation p.G19C 0.17 deleterious_low_confidence(0.05) probably_damaging(0.965) TCGA-4X-A9F9-01 4 6578322 6578322 C T MAN2B2 Silent p.Y52Y 0.12 TCGA-4X-A9F9-01 7 45003698 45003698 G A MYO1G Silent p.L899L 0.13 TCGA-4X-A9FA-01 10 79614094 79614094 G C DLG5 Missense_Mutation p.L191V 0.40 deleterious(0) probably_damaging(0.997) TCGA-4X-A9FA-01 11 64591978 64591978 G A CDC42BPG Silent p.L1541L 0.07 TCGA-4X-A9FA-01 11 66101499 66101499 T C RIN1 Silent p.Q494Q 0.17 TCGA-4X-A9FA-01 14 32563307 32563307 T G ARHGAP5 Missense_Mutation p.S1144R 0.35 tolerated(0.45) benign(0.128) TCGA-4X-A9FA-01 1 243480113 243480113 C A SDCCAG8 Missense_Mutation p.T329K 0.33 tolerated(0.06) benign(0.222) TCGA-4X-A9FA-01 20 2635797 2635797 T C NOP56 Intron 0.07 TCGA-4X-A9FA-01 2 21231626 21231626 C G APOB Missense_Mutation p.R2705T 0.50 benign(0.343) TCGA-4X-A9FA-01 3 130313158 130313158 C T COL6A6 Missense_Mutation p.R1502C 0.42 tolerated(0.19) possibly_damaging(0.634) TCGA-4X-A9FA-01 4 176554455 176554455 A G GPM6A 3'UTR 0.05 TCGA-4X-A9FA-01 4 2749564 2749564 T G TNIP2 Missense_Mutation p.S129R 0.13 deleterious(0.05) benign(0.091) TCGA-4X-A9FA-01 5 118485208 118485208 T C DMXL1 Missense_Mutation p.V1229A 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-4X-A9FA-01 5 40853422 40853422 A C CARD6 Missense_Mutation p.N663T 0.07 tolerated(0.16) possibly_damaging(0.517) TCGA-4X-A9FA-01 5 93856600 93856600 T A KIAA0825 Missense_Mutation p.Q108L 0.07 tolerated(0.07) benign(0.023) TCGA-4X-A9FA-01 6 44107320 44107320 C T TMEM63B Missense_Mutation p.P175L 0.27 deleterious(0) probably_damaging(1) TCGA-4X-A9FA-01 7 120768474 120768474 C T CPED1 Silent p.S447S 0.09 TCGA-4X-A9FA-01 7 131151081 131151081 A G MKLN1 Missense_Mutation p.K612R 0.07 tolerated(0.21) benign(0.006) TCGA-4X-A9FA-01 7 142983162 142983162 G T TMEM139 Missense_Mutation p.V38F 0.39 deleterious(0.03) possibly_damaging(0.598) TCGA-4X-A9FA-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.36 deleterious(0.05) probably_damaging(0.992) TCGA-4X-A9FA-01 9 131395880 131395880 C T SPTAN1 3'UTR 0.07 TCGA-4X-A9FA-01 9 35377653 35377653 G C UNC13B Missense_Mutation p.D593H 0.21 deleterious(0) probably_damaging(0.999) TCGA-4X-A9FB-01 12 10213747 10213747 C T CLEC9A Missense_Mutation p.A65V 0.15 tolerated(0.66) benign(0.016) TCGA-4X-A9FB-01 12 123467235 123467235 G A ARL6IP4 3'UTR 0.12 TCGA-4X-A9FB-01 13 39611489 39611489 A G PROSER1 5'UTR 0.07 TCGA-4X-A9FB-01 1 249142696 249142696 G A ZNF672 Missense_Mutation p.R408H 0.08 tolerated(0.15) probably_damaging(0.925) TCGA-4X-A9FB-01 2 88472837 88472837 G T THNSL2 Missense_Mutation p.K56N 0.16 tolerated(0.07) benign(0.365) TCGA-4X-A9FB-01 3 18391082 18391082 G A SATB1 Silent p.L656L 0.11 TCGA-4X-A9FB-01 4 185940840 185940840 C A HELT Missense_Mutation p.S109R 0.18 tolerated_low_confidence(0.83) benign(0) TCGA-4X-A9FB-01 6 35543230 35543230 A T FKBP5 3'UTR 0.07 TCGA-4X-A9FB-01 8 145555371 145555371 G A SCRT1 3'UTR 0.07 TCGA-4X-A9FB-01 9 140000301 140000301 G T MAN1B1 Intron 0.19 TCGA-4X-A9FB-01 X 85404026 85404026 G - DACH2 Frame_Shift_Del p.A136Pfs*6 0.09 TCGA-4X-A9FC-01 12 3702343 3702343 C T PRMT8 Missense_Mutation p.R394C 0.10 deleterious(0) probably_damaging(0.995) TCGA-4X-A9FC-01 12 43817527 43817527 T C ADAMTS20 Intron 0.05 TCGA-4X-A9FC-01 14 74182578 74182578 G T ELMSAN1 3'UTR 0.20 TCGA-4X-A9FC-01 19 55255454 55255454 A G KIR2DL3 Silent p.G194G 0.35 TCGA-4X-A9FC-01 19 5784072 5784072 C A PRR22 Intron 0.08 TCGA-4X-A9FC-01 19 7976402 7976402 C - MAP2K7 Frame_Shift_Del p.P341Rfs*70 0.09 TCGA-4X-A9FC-01 19 9091798 9091798 C T MUC16 Missense_Mutation p.G6D 0.11 unknown(0) TCGA-4X-A9FC-01 1 32280381 32280381 C T SPOCD1 Missense_Mutation p.S185N 0.07 tolerated(0.36) benign(0.002) TCGA-4X-A9FC-01 1 54649868 54649868 C T CYB5RL Missense_Mutation p.G169E 0.07 deleterious(0) probably_damaging(1) TCGA-4X-A9FC-01 2 100623100 100623100 C T AFF3 Silent p.Q314Q 0.08 TCGA-4X-A9FC-01 3 141165531 141165531 A G ZBTB38 3'UTR 0.07 TCGA-4X-A9FC-01 3 14799045 14799045 C T C3orf20 Missense_Mutation p.A703V 0.16 tolerated(0.1) benign(0.037) TCGA-4X-A9FC-01 5 122950268 122950268 C T CSNK1G3 3'UTR 0.36 TCGA-4X-A9FC-01 7 149430927 149430927 C T KRBA1 Missense_Mutation p.P961S 0.06 tolerated(0.46) probably_damaging(0.986) TCGA-4X-A9FC-01 7 43548467 43548467 C A HECW1 Intron 0.27 TCGA-4X-A9FC-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.05 deleterious(0.05) probably_damaging(0.992) TCGA-4X-A9FC-01 8 1645408 1645408 C T DLGAP2 Silent p.D884D 0.10 TCGA-4X-A9FC-01 9 136037764 136037764 G A GBGT1 Silent p.F12F 0.04 TCGA-4X-A9FC-01 9 37861352 37861352 C G DCAF10 Missense_Mutation p.D509E 0.05 tolerated(0.15) benign(0.225) TCGA-4X-A9FC-01 X 53602144 53602144 G C HUWE1 Missense_Mutation p.T2023S 0.07 benign(0.041) TCGA-4X-A9FC-01 X 70598827 70598827 G C TAF1 Missense_Mutation p.G456R 0.05 deleterious(0) probably_damaging(1) TCGA-4X-A9FC-01 X 74494112 74494112 C T UPRT Missense_Mutation p.P8L 0.09 tolerated_low_confidence(0.47) benign(0.002) TCGA-4X-A9FD-01 10 81143731 81143731 G A ZCCHC24 3'UTR 0.07 TCGA-4X-A9FD-01 11 1271411 1271411 C T MUC5B Missense_Mutation p.T4434I 0.11 benign(0.007) TCGA-4X-A9FD-01 11 66743651 66743652 - T C11orf86 Frame_Shift_Ins p.R94Kfs*92 0.16 TCGA-4X-A9FD-01 11 70317174 70317175 - T SHANK2 3'UTR 0.08 TCGA-4X-A9FD-01 11 82896654 82896654 A T PCF11 3'UTR 0.04 TCGA-4X-A9FD-01 12 124288263 124288263 C A DNAH10 Silent p.L772L 0.08 TCGA-4X-A9FD-01 12 53400247 53400247 G A EIF4B 5'UTR 0.14 TCGA-4X-A9FD-01 13 45008162 45008162 C T TSC22D1 3'UTR 0.11 TCGA-4X-A9FD-01 13 53196270 53196270 C T HNRNPA1L2 5'UTR 0.14 TCGA-4X-A9FD-01 15 65551468 65551468 C G PARP16 3'UTR 0.16 TCGA-4X-A9FD-01 16 76573634 76573634 A G CNTNAP4 Missense_Mutation p.Y1007C 0.11 deleterious(0) probably_damaging(0.992) TCGA-4X-A9FD-01 16 86544465 86544465 G T FOXF1 Missense_Mutation p.R97L 0.14 deleterious(0) probably_damaging(0.989) TCGA-4X-A9FD-01 17 48823273 48823273 C T LUC7L3 Nonsense_Mutation p.R296* 0.09 TCGA-4X-A9FD-01 17 60526594 60526594 A G METTL2A 3'UTR 0.10 TCGA-4X-A9FD-01 19 30476150 30476150 A G URI1 Missense_Mutation p.Y58C 0.09 deleterious(0) probably_damaging(1) TCGA-4X-A9FD-01 1 175375383 175375383 G A TNR Silent p.N156N 0.14 TCGA-4X-A9FD-01 1 203316722 203316722 A G FMOD Missense_Mutation p.I226T 0.11 tolerated(0.26) benign(0.037) TCGA-4X-A9FD-01 1 22214535 22214535 G A HSPG2 Missense_Mutation p.T200M 0.08 possibly_damaging(0.782) TCGA-4X-A9FD-01 1 32124090 32124090 G - COL16A1 Frame_Shift_Del p.P1340Qfs*95 0.11 TCGA-4X-A9FD-01 1 37307518 37307518 C T GRIK3 Missense_Mutation p.R450Q 0.12 deleterious(0.01) benign(0.26) TCGA-4X-A9FD-01 1 46725656 46725656 T C RAD54L Silent p.L98L 0.09 TCGA-4X-A9FD-01 1 47685038 47685038 G A TAL1 3'UTR 0.20 TCGA-4X-A9FD-01 20 31876668 31876668 C T BPIFB1 Silent p.T79T 0.15 TCGA-4X-A9FD-01 20 55208519 55208519 C T TFAP2C Missense_Mutation p.L233F 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-4X-A9FD-01 22 19511565 19511565 C T CLDN5 Missense_Mutation p.A157T 0.11 deleterious(0.01) possibly_damaging(0.804) TCGA-4X-A9FD-01 2 220085611 220085611 G T ATG9A Missense_Mutation p.P791H 0.17 deleterious_low_confidence(0.01) benign(0.003) TCGA-4X-A9FD-01 2 31147089 31147089 G C GALNT14 Missense_Mutation p.Q431E 0.10 deleterious(0) possibly_damaging(0.542) TCGA-4X-A9FD-01 3 13383594 13383594 G A NUP210 Silent p.Y998Y 0.16 TCGA-4X-A9FD-01 3 169684404 169684404 G C SEC62 5'Flank 0.16 TCGA-4X-A9FD-01 5 118580208 118580209 AG - DMXL1 Frame_Shift_Del p.K2932Nfs*5 0.11 TCGA-4X-A9FD-01 5 140187109 140187109 C T PCDHA4 Missense_Mutation p.P113S 0.08 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-4X-A9FD-01 5 169477375 169477375 A T DOCK2 Missense_Mutation p.D1396V 0.17 deleterious(0.05) benign(0.138) TCGA-4X-A9FD-01 6 133427333 133427333 C T LINC00326 RNA 0.12 TCGA-4X-A9FD-01 6 32847493 32847493 G A PPP1R2P1 RNA 0.06 TCGA-4X-A9FD-01 6 43308114 43308114 G T ZNF318 Missense_Mutation p.P1208T 0.14 benign(0.015) TCGA-4X-A9FD-01 7 98805085 98805085 G A KPNA7 Missense_Mutation p.P2L 0.19 deleterious(0) benign(0.013) TCGA-4X-A9FD-01 8 141541645 141541645 G A AGO2 3'UTR 0.38 TCGA-4X-A9FD-01 8 144464787 144464787 C T RHPN1 Missense_Mutation p.P660L 0.19 tolerated(0.3) benign(0) TCGA-4X-A9FD-01 8 41798719 41798719 C A KAT6A Missense_Mutation p.A894S 0.13 benign(0.021) TCGA-4X-A9FD-01 9 108125217 108125217 T G SLC44A1 Missense_Mutation p.F339C 0.13 deleterious(0) possibly_damaging(0.855) TCGA-4X-A9FD-01 X 18966938 18966938 C T PHKA2 Missense_Mutation p.R154H 0.13 tolerated(0.68) benign(0.014) TCGA-4X-A9FD-01 X 73958659 73958659 G A KIAA2022 3'UTR 0.16 TCGA-5G-A9ZZ-01 10 115805707 115805707 G A ADRB1 3'UTR 0.16 TCGA-5G-A9ZZ-01 10 27703247 27703247 C T PTCHD3 5'UTR 0.14 TCGA-5G-A9ZZ-01 10 92987128 92987128 C A PCGF5 Intron 0.14 TCGA-5G-A9ZZ-01 11 68216448 68216448 G A LRP5 Silent p.A1586A 0.29 TCGA-5G-A9ZZ-01 12 14929407 14929407 C T H2AFJ 3'UTR 0.26 TCGA-5G-A9ZZ-01 12 41900409 41900409 C G PDZRN4 Missense_Mutation p.A332G 0.22 tolerated(0.1) possibly_damaging(0.661) TCGA-5G-A9ZZ-01 12 6640225 6640225 A G NCAPD2 Missense_Mutation p.D1368G 0.16 deleterious(0) probably_damaging(0.928) TCGA-5G-A9ZZ-01 12 6959688 6959688 C A CDCA3 Missense_Mutation p.D65Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-5G-A9ZZ-01 12 6993591 6993591 C T RPL13P5 RNA 0.21 TCGA-5G-A9ZZ-01 13 46161310 46161310 G A FAM194B Silent p.F248F 0.11 TCGA-5G-A9ZZ-01 14 100563849 100563849 T C EVL Missense_Mutation p.L71P 0.19 deleterious(0) probably_damaging(1) TCGA-5G-A9ZZ-01 15 84868633 84868633 A G AC136698.1 3'Flank 0.09 TCGA-5G-A9ZZ-01 17 35413969 35413969 G A AATF 3'UTR 0.24 TCGA-5G-A9ZZ-01 17 36286976 36286976 C T TBC1D3F Intron 0.17 TCGA-5G-A9ZZ-01 18 61254615 61254615 C T SERPINB13 5'UTR 0.13 TCGA-5G-A9ZZ-01 19 2271861 2271861 C T OAZ1 Silent p.D124D 0.06 TCGA-5G-A9ZZ-01 1 246810860 246810860 T C CNST Missense_Mutation p.S453P 0.21 tolerated(0.11) benign(0.019) TCGA-5G-A9ZZ-01 6 28116370 28116370 C T ZKSCAN8 Missense_Mutation p.T62I 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-5G-A9ZZ-01 6 28971674 28971674 C T ZNF311 Intron 0.21 TCGA-5G-A9ZZ-01 X 17745002 17745002 C A NHS Missense_Mutation p.Q905K 0.19 tolerated(0.51) benign(0.131) TCGA-5G-A9ZZ-01 X 37979640 37979640 A G SYTL5 Silent p.Q564Q 0.24 TCGA-5K-AAAP-01 10 16859406 16859406 G - RSU1 5'Flank 0.08 TCGA-5K-AAAP-01 10 45939679 45939679 G A ALOX5 Missense_Mutation p.R597H 0.23 tolerated(0.09) probably_damaging(1) TCGA-5K-AAAP-01 11 118464312 118464312 C T ARCN1 Silent p.C380C 0.12 TCGA-5K-AAAP-01 11 34378463 34378463 A G ABTB2 Missense_Mutation p.I223T 0.33 deleterious(0) possibly_damaging(0.635) TCGA-5K-AAAP-01 11 61291930 61291930 C T SYT7 Missense_Mutation p.D308N 0.26 deleterious(0) probably_damaging(0.997) TCGA-5K-AAAP-01 12 55794550 55794550 C T OR6C65 Silent p.L80L 0.28 TCGA-5K-AAAP-01 13 23913517 23913517 T C SACS Missense_Mutation p.R1500G 0.08 probably_damaging(0.989) TCGA-5K-AAAP-01 13 35738643 35738643 A C NBEA Silent p.P1410P 0.18 TCGA-5K-AAAP-01 13 49281387 49281387 G A CYSLTR2 Missense_Mutation p.R145Q 0.25 tolerated(0.91) benign(0.098) TCGA-5K-AAAP-01 14 107199083 107199083 C T IGHV3-72 Missense_Mutation p.R69H 0.27 tolerated_low_confidence(0.51) benign(0.386) TCGA-5K-AAAP-01 19 49641538 49641539 - A PPFIA3 Frame_Shift_Ins p.D644Efs*40 0.25 TCGA-5K-AAAP-01 19 7794040 7794040 G A CLEC4G 3'UTR 0.29 TCGA-5K-AAAP-01 20 10625827 10625827 A C JAG1 Missense_Mutation p.C731G 0.12 deleterious(0) probably_damaging(0.998) TCGA-5K-AAAP-01 21 41416039 41416039 G A DSCAM Silent p.S1783S 0.08 TCGA-5K-AAAP-01 2 160615812 160615812 T G MARCH7 Missense_Mutation p.I620S 0.15 deleterious(0) possibly_damaging(0.557) TCGA-5K-AAAP-01 2 220091611 220091611 G T ATG9A Silent p.I64I 0.31 TCGA-5K-AAAP-01 2 55775824 55775825 - T SMEK2 3'UTR 0.10 TCGA-5K-AAAP-01 2 71595630 71595630 A G ZNF638 Missense_Mutation p.D705G 0.14 deleterious(0) possibly_damaging(0.895) TCGA-5K-AAAP-01 3 184053137 184053137 A G EIF4G1 3'UTR 0.05 TCGA-5K-AAAP-01 3 36896972 36896972 A G TRANK1 Missense_Mutation p.L1370P 0.16 deleterious(0) probably_damaging(0.999) TCGA-5K-AAAP-01 4 90856011 90856011 C T MMRN1 Nonsense_Mutation p.Q394* 0.12 TCGA-5K-AAAP-01 6 106634402 106634402 A C ATG5 3'UTR 0.19 TCGA-5K-AAAP-01 6 36571046 36571046 G A SRSF3 3'UTR 0.08 TCGA-5K-AAAP-01 7 142498750 142498750 C T TRBC2 Silent p.P9P 0.24 TCGA-5K-AAAP-01 7 70880948 70880948 G T WBSCR17 Missense_Mutation p.Q221H 0.26 deleterious(0.01) possibly_damaging(0.483) TCGA-5K-AAAP-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.22 deleterious(0.05) probably_damaging(0.992) TCGA-5K-AAAP-01 8 146063439 146063439 G A ZNF7 Intron 0.18 TCGA-5K-AAAP-01 9 78953202 78953202 G T PCSK5 Missense_Mutation p.G1575V 0.23 tolerated(0.18) benign(0.021) TCGA-5K-AAAP-01 X 152613061 152613061 G T ZNF275 Silent p.S306S 0.19 TCGA-5U-AB0D-01 10 102247373 102247373 T C SEC31B Silent p.%3D 0.20 TCGA-5U-AB0D-01 10 135142515 135142515 T A CALY Splice_Site 0.45 TCGA-5U-AB0D-01 10 16866993 16866993 C T CUBN Missense_Mutation p.R3618Q 0.07 tolerated(0.49) benign(0.037) TCGA-5U-AB0D-01 10 47207822 47207822 C T AGAP10 Missense_Mutation p.C225Y 0.03 tolerated_low_confidence(0.76) unknown(0) TCGA-5U-AB0D-01 10 8019222 8019222 G A TAF3 Missense_Mutation p.A751T 0.50 tolerated(0.06) benign(0) TCGA-5U-AB0D-01 10 93040313 93040313 C T PCGF5 3'UTR 0.20 TCGA-5U-AB0D-01 11 125830683 125830683 G A CDON 3'UTR 0.23 TCGA-5U-AB0D-01 11 44931421 44931421 G A TSPAN18 Missense_Mutation p.V77I 0.51 tolerated(1) benign(0.002) TCGA-5U-AB0D-01 11 47266389 47266389 C T ACP2 Nonsense_Mutation p.W223* 0.28 TCGA-5U-AB0D-01 11 5624749 5624749 G A TRIM6 Silent p.R97R 0.54 TCGA-5U-AB0D-01 11 61512422 61512422 G A DAGLA 3'UTR 0.37 TCGA-5U-AB0D-01 11 66620063 66620063 G A PC Missense_Mutation p.R558W 0.24 deleterious(0) probably_damaging(1) TCGA-5U-AB0D-01 11 85418542 85418542 C T SYTL2 Missense_Mutation p.G1016D 0.37 deleterious(0.02) benign(0.43) TCGA-5U-AB0D-01 13 52549184 52549184 C T ATP7B Missense_Mutation p.A58T 0.12 tolerated(0.68) benign(0) TCGA-5U-AB0D-01 14 45431830 45431830 C T FAM179B Missense_Mutation p.S69L 0.07 deleterious_low_confidence(0) benign(0.115) TCGA-5U-AB0D-01 15 102303979 102303979 C G DNM1P47 RNA 0.26 TCGA-5U-AB0D-01 15 43281144 43281144 G T UBR1 Silent p.I1290I 0.20 TCGA-5U-AB0D-01 15 83011381 83011382 TG - GOLGA6L19 3'UTR 0.09 TCGA-5U-AB0D-01 16 2012130 2012130 C T RPS2 Missense_Mutation p.R284Q 0.20 deleterious(0.01) benign(0.014) TCGA-5U-AB0D-01 16 30531237 30531237 C A ITGAL Missense_Mutation p.S1096R 0.55 deleterious(0) probably_damaging(1) TCGA-5U-AB0D-01 16 4903146 4903146 A G UBN1 Silent p.K76K 0.12 TCGA-5U-AB0D-01 16 743739 743739 A G FBXL16 3'UTR 0.35 TCGA-5U-AB0D-01 16 97504 97504 G A POLR3K Missense_Mutation p.R85C 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-5U-AB0D-01 17 29685589 29685589 G A NF1 Missense_Mutation p.V2688M 0.56 tolerated(1) probably_damaging(0.986) TCGA-5U-AB0D-01 17 31618944 31618944 C T ASIC2 Missense_Mutation p.A64T 0.29 tolerated(0.9) benign(0.012) TCGA-5U-AB0D-01 17 42636535 42636535 G A FZD2 Silent p.S493S 0.26 TCGA-5U-AB0D-01 17 45918216 45918234 AGAGGCGGGCCTCTCCATA - SCRN2 Intron 0.30 TCGA-5U-AB0D-01 17 73485730 73485730 T C KIAA0195 Missense_Mutation p.L314P 0.23 deleterious(0.01) possibly_damaging(0.864) TCGA-5U-AB0D-01 17 74003161 74003161 C - EVPL 3'UTR 0.52 TCGA-5U-AB0D-01 18 14791487 14791487 G A ANKRD30B Missense_Mutation p.E608K 0.44 tolerated_low_confidence(0.11) probably_damaging(0.969) TCGA-5U-AB0D-01 18 34647336 34647336 C A KIAA1328 Missense_Mutation p.P354T 0.16 deleterious(0.04) benign(0.234) TCGA-5U-AB0D-01 18 64172241 64172241 A T CDH19 Missense_Mutation p.D709E 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-5U-AB0D-01 18 71740898 71740898 G A FBXO15 Missense_Mutation p.P444L 0.28 deleterious(0) possibly_damaging(0.864) TCGA-5U-AB0D-01 19 48593629 48593629 T C PLA2G4C Missense_Mutation p.Y262C 0.22 tolerated(0.12) benign(0.077) TCGA-5U-AB0D-01 19 49573389 49573389 G A KCNA7 Silent p.D434D 0.18 TCGA-5U-AB0D-01 19 52537807 52537807 G A ZNF432 Silent p.C375C 0.48 TCGA-5U-AB0D-01 1 100111820 100111820 G A PALMD 5'UTR 0.26 TCGA-5U-AB0D-01 1 12908157 12908157 A G HNRNPCL1 5'UTR 0.04 TCGA-5U-AB0D-01 1 148346982 148346982 A G NBPF20 5'UTR 0.08 TCGA-5U-AB0D-01 1 150525906 150525906 C T ADAMTSL4 Missense_Mutation p.R147W 0.14 tolerated(0.09) benign(0.015) TCGA-5U-AB0D-01 1 158576545 158576545 C T OR10Z1 Missense_Mutation p.S106L 0.18 tolerated(0.3) benign(0.005) TCGA-5U-AB0D-01 1 174670251 174670251 C G RABGAP1L Intron 0.12 TCGA-5U-AB0D-01 1 245017533 245017533 C T HNRNPU 3'UTR 0.05 TCGA-5U-AB0D-01 1 32256617 32256617 G A SPOCD1 Missense_Mutation p.P1080S 0.48 deleterious(0) probably_damaging(0.947) TCGA-5U-AB0D-01 1 52276077 52276077 C T NRD1 Splice_Site p.X662_splice 0.27 TCGA-5U-AB0D-01 1 99127441 99127441 G A SNX7 Missense_Mutation p.E52K 0.27 tolerated_low_confidence(0.12) probably_damaging(0.97) TCGA-5U-AB0D-01 20 23060803 23060803 G A CD93 3'UTR 0.16 TCGA-5U-AB0D-01 20 3783595 3783595 C T CDC25B Silent p.D411D 0.27 TCGA-5U-AB0D-01 20 391181 391181 C T RBCK1 Intron 0.13 TCGA-5U-AB0D-01 21 45404445 45404445 G C AGPAT3 3'UTR 0.44 TCGA-5U-AB0D-01 22 20640787 20640787 T A AC011718.2 Intron 0.07 TCGA-5U-AB0D-01 2 101019055 101019055 C A CHST10 Nonsense_Mutation p.E55* 0.12 TCGA-5U-AB0D-01 2 242149889 242149889 C T ANO7 Missense_Mutation p.R543C 0.27 tolerated(0.18) probably_damaging(0.935) TCGA-5U-AB0D-01 2 70066635 70066635 G T GMCL1 Missense_Mutation p.S144I 0.34 tolerated(0.13) benign(0.094) TCGA-5U-AB0D-01 2 9661424 9661424 G C ADAM17 Missense_Mutation p.Q289E 0.11 tolerated(0.2) benign(0) TCGA-5U-AB0D-01 3 185542807 185542807 C G IGF2BP2 5'UTR 0.28 TCGA-5U-AB0D-01 3 195508948 195508948 G A MUC4 Missense_Mutation p.P3168L 0.19 probably_damaging(0.93) TCGA-5U-AB0D-01 3 47455441 47455441 C T SCAP Missense_Mutation p.R1248H 0.41 deleterious(0) probably_damaging(0.999) TCGA-5U-AB0D-01 4 110971055 110971055 A T ELOVL6 3'UTR 0.05 TCGA-5U-AB0D-01 4 159956214 159956214 G T C4orf45 Missense_Mutation p.T12N 0.40 tolerated(0.49) benign(0.123) TCGA-5U-AB0D-01 4 44719295 44719295 G T GNPDA2 Missense_Mutation p.P82T 0.19 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-5U-AB0D-01 4 5642519 5642519 A G EVC2 Missense_Mutation p.C398R 0.54 tolerated(0.19) probably_damaging(0.995) TCGA-5U-AB0D-01 4 7533320 7533320 C T SORCS2 Silent p.I204I 0.29 TCGA-5U-AB0D-01 4 88047346 88047346 A C AFF1 Missense_Mutation p.K890T 0.08 deleterious(0) unknown(0) TCGA-5U-AB0D-01 5 140237615 140237615 C T PCDHA10 Missense_Mutation p.T661M 0.44 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-5U-AB0D-01 5 140552347 140552347 C T PCDHB7 5'UTR 0.34 TCGA-5U-AB0D-01 5 140744606 140744606 G A PCDHGA5 Missense_Mutation p.D237N 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-5U-AB0D-01 5 33982460 33982460 C T SLC45A2 Missense_Mutation p.G148D 0.19 deleterious(0) probably_damaging(1) TCGA-5U-AB0D-01 5 58269506 58269506 C T PDE4D 3'UTR 0.44 TCGA-5U-AB0D-01 5 96503452 96503452 G T RIOK2 Missense_Mutation p.D372E 0.39 tolerated(0.33) benign(0.001) TCGA-5U-AB0D-01 6 142740971 142740971 G A GPR126 Missense_Mutation p.D1017N 0.35 tolerated(0.4) benign(0.22) TCGA-5U-AB0D-01 6 170121100 170121100 C - PHF10 Splice_Site p.X65_splice 0.46 TCGA-5U-AB0D-01 6 21595973 21595974 - CGAC SOX4 Frame_Shift_Ins p.L405Rfs*12 0.84 TCGA-5U-AB0D-01 6 25776847 25776847 T C SLC17A4 Missense_Mutation p.F338L 0.61 tolerated(0.13) benign(0.007) TCGA-5U-AB0D-01 6 27858432 27858432 C T HIST1H3J Missense_Mutation p.V47M 0.11 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-5U-AB0D-01 7 107357932 107357932 C T SLC26A4 3'UTR 0.43 TCGA-5U-AB0D-01 7 57194325 57194325 T A ZNF479 Missense_Mutation p.E47V 0.37 deleterious(0) probably_damaging(0.999) TCGA-5U-AB0D-01 7 57528596 57528596 T C ZNF716 Silent p.N143N 0.22 TCGA-5U-AB0D-01 7 63538653 63538653 C T ZNF727 Missense_Mutation p.S409L 0.24 deleterious(0.03) benign(0.039) TCGA-5U-AB0D-01 8 144413491 144413491 G A TOP1MT Silent p.H47H 0.16 TCGA-5U-AB0D-01 8 22477580 22477580 C T CCAR2 3'UTR 0.24 TCGA-5U-AB0D-01 9 104170453 104170453 A G ZNF189 Missense_Mutation p.N135D 0.48 tolerated(0.61) benign(0.347) TCGA-5U-AB0D-01 9 108483845 108483845 C A TMEM38B Missense_Mutation p.D99E 0.24 deleterious(0) probably_damaging(0.99) TCGA-5U-AB0D-01 9 116122940 116122940 G A BSPRY Missense_Mutation p.E152K 0.21 deleterious(0.05) benign(0.296) TCGA-5U-AB0D-01 9 132502127 132502127 G A PTGES Silent p.N74N 0.15 TCGA-5U-AB0D-01 9 133306767 133306767 C T HMCN2 Silent p.C597C 0.08 TCGA-5U-AB0D-01 9 79325399 79325399 G A PRUNE2 Silent p.S597S 0.30 TCGA-5U-AB0D-01 X 106808130 106808130 C T FRMPD3 Missense_Mutation p.S410L 0.24 deleterious(0.02) benign(0.17) TCGA-5U-AB0D-01 X 119562288 119562288 G T LAMP2 3'UTR 0.20 TCGA-5U-AB0D-01 X 12841018 12841018 G A PRPS2 3'UTR 0.13 TCGA-5U-AB0D-01 X 135593719 135593719 C A HTATSF1 Missense_Mutation p.D605E 0.17 tolerated_low_confidence(0.19) unknown(0) TCGA-5U-AB0D-01 X 144909911 144909911 G A TMEM257 3'UTR 0.09 TCGA-5U-AB0D-01 X 153297697 153297697 G A MECP2 Missense_Mutation p.S125F 0.60 deleterious(0) probably_damaging(0.999) TCGA-5U-AB0D-01 X 154448565 154448565 C T VBP1 Missense_Mutation p.L67F 0.15 deleterious(0) probably_damaging(0.973) TCGA-5U-AB0D-01 X 155005073 155005073 T C SPRY3 3'UTR 0.05 TCGA-5U-AB0D-01 X 34149546 34149546 C T FAM47A Missense_Mutation p.E284K 0.15 tolerated(0.71) possibly_damaging(0.486) TCGA-5U-AB0D-01 X 37850562 37850562 C T CXorf27 3'UTR 0.22 TCGA-5U-AB0D-01 X 48760246 48760246 A T PQBP1 Missense_Mutation p.K228M 0.12 deleterious(0) probably_damaging(0.995) TCGA-5U-AB0D-01 X 50338117 50338117 G A SHROOM4 3'UTR 0.24 TCGA-5U-AB0D-01 X 55042031 55042031 T A ALAS2 Missense_Mutation p.D383V 0.14 deleterious(0) probably_damaging(1) TCGA-5U-AB0D-01 X 70787885 70787885 G A OGT Missense_Mutation p.C962Y 0.16 deleterious(0) possibly_damaging(0.872) TCGA-5U-AB0E-01 10 61551250 61551250 G A CCDC6 3'UTR 0.14 TCGA-5U-AB0E-01 10 61551251 61551251 C T CCDC6 3'UTR 0.14 TCGA-5U-AB0E-01 12 1702733 1702733 C A FBXL14 Missense_Mutation p.G167V 0.16 deleterious(0.01) probably_damaging(0.924) TCGA-5U-AB0E-01 15 75249185 75249185 G A RPP25 5'UTR 0.21 TCGA-5U-AB0E-01 15 93528867 93528867 A G CHD2 Missense_Mutation p.D1126G 0.10 deleterious(0.04) benign(0.009) TCGA-5U-AB0E-01 15 99023847 99023847 A G FAM169B Missense_Mutation p.Y56H 0.08 deleterious(0) probably_damaging(1) TCGA-5U-AB0E-01 17 71382583 71382583 C A SDK2 Splice_Site p.X1500_splice 0.31 TCGA-5U-AB0E-01 17 80195443 80195443 T A SLC16A3 Missense_Mutation p.L266Q 0.29 deleterious(0) probably_damaging(1) TCGA-5U-AB0E-01 19 15053237 15053237 G A OR7C2 Missense_Mutation p.G313R 0.15 tolerated_low_confidence(0.67) benign(0.003) TCGA-5U-AB0E-01 19 39409099 39409099 A T SARS2 Missense_Mutation p.D295E 0.18 deleterious(0.05) probably_damaging(0.96) TCGA-5U-AB0E-01 19 41198227 41198227 C T ADCK4 Missense_Mutation p.A450T 0.11 deleterious(0.03) possibly_damaging(0.641) TCGA-5U-AB0E-01 19 51503886 51503886 C T KLK8 Silent p.S53S 0.17 TCGA-5U-AB0E-01 1 150259017 150259017 C T C1orf51 Missense_Mutation p.P270L 0.06 tolerated(0.13) benign(0.241) TCGA-5U-AB0E-01 1 157665300 157665300 A G FCRL3 Silent p.S410S 0.08 TCGA-5U-AB0E-01 22 24968093 24968093 T G SNRPD3 3'UTR 0.08 TCGA-5U-AB0E-01 2 114399736 114399736 T C RABL2A 3'UTR 0.08 TCGA-5U-AB0E-01 2 155712007 155712007 G A KCNJ3 3'UTR 0.18 TCGA-5U-AB0E-01 2 182413585 182413585 C T CERKL Splice_Site p.X325_splice 0.15 TCGA-5U-AB0E-01 2 213871620 213871620 T C IKZF2 3'UTR 0.17 TCGA-5U-AB0E-01 2 219269415 219269415 T C CTDSP1 3'UTR 0.05 TCGA-5U-AB0E-01 2 220327082 220327082 G - SPEG Frame_Shift_Del p.E895Sfs*9 0.12 TCGA-5U-AB0E-01 3 130113830 130113830 C G COL6A5 Missense_Mutation p.D1030E 0.08 tolerated(0.27) benign(0.019) TCGA-5U-AB0E-01 4 146085314 146085314 G C OTUD4 Missense_Mutation p.P71A 0.09 deleterious(0.02) benign(0.343) TCGA-5U-AB0E-01 4 870324 870324 A T GAK Missense_Mutation p.F683Y 0.17 tolerated(0.1) possibly_damaging(0.786) TCGA-5U-AB0E-01 5 171469189 171469189 T G STK10 3'UTR 0.08 TCGA-5U-AB0E-01 6 127837038 127837038 C - SOGA3 Frame_Shift_Del p.G241Afs*133 0.17 TCGA-5U-AB0E-01 6 28097417 28097417 A G ZSCAN16 Missense_Mutation p.S246G 0.11 tolerated(0.09) benign(0) TCGA-5U-AB0E-01 6 34101191 34101191 G - GRM4 Frame_Shift_Del p.P28Lfs*13 0.20 TCGA-5U-AB0E-01 6 39864707 39864707 C T DAAM2 Missense_Mutation p.R821W 0.20 deleterious(0) probably_damaging(0.958) TCGA-5U-AB0E-01 7 122768933 122768933 C T SLC13A1 Missense_Mutation p.G367R 0.16 tolerated(0.05) probably_damaging(1) TCGA-5U-AB0E-01 7 17379748 17379748 G - AHR Frame_Shift_Del p.A768Pfs*32 0.11 TCGA-5U-AB0E-01 7 27134902 27134902 G A HOXA1 Silent p.V210V 0.11 TCGA-5U-AB0E-01 8 116424459 116424459 T C TRPS1 3'UTR 0.15 TCGA-5U-AB0F-01 10 72294186 72294186 C - PALD1 Frame_Shift_Del p.T345Rfs*13 0.08 TCGA-5U-AB0F-01 11 112832169 112832169 C T NCAM1 Silent p.R4R 0.09 TCGA-5U-AB0F-01 11 117780600 117780600 G A TMPRSS13 Missense_Mutation p.H344Y 0.09 deleterious(0) possibly_damaging(0.844) TCGA-5U-AB0F-01 11 124413131 124413132 AC - OR8B12 Frame_Shift_Del p.C140Ffs*30 0.14 TCGA-5U-AB0F-01 11 18373429 18373429 C T GTF2H1 Missense_Mutation p.A352V 0.08 tolerated(0.44) benign(0.002) TCGA-5U-AB0F-01 12 97078944 97078944 G A C12orf55 Missense_Mutation p.S1981N 0.10 deleterious(0.01) benign(0.004) TCGA-5U-AB0F-01 13 60485949 60485949 C T DIAPH3 Missense_Mutation p.D763N 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-5U-AB0F-01 15 29992751 29992751 G T TJP1 3'UTR 0.15 TCGA-5U-AB0F-01 15 42651966 42651966 T A CAPN3 5'UTR 0.11 TCGA-5U-AB0F-01 16 58550161 58550161 C T SETD6 Silent p.L130L 0.08 TCGA-5U-AB0F-01 17 73914073 73914073 C T FBF1 Silent p.S760S 0.08 TCGA-5U-AB0F-01 17 77926539 77926539 C T TBC1D16 Silent p.P286P 0.06 TCGA-5U-AB0F-01 17 80553659 80553659 G A FOXK2 Intron 0.18 TCGA-5U-AB0F-01 18 7888204 7888204 T G PTPRM Missense_Mutation p.F99L 0.18 deleterious(0) probably_damaging(0.999) TCGA-5U-AB0F-01 19 51871173 51871173 C T CLDND2 Missense_Mutation p.G93S 0.23 tolerated(0.73) benign(0.053) TCGA-5U-AB0F-01 1 155920662 155920662 G A ARHGEF2 Silent p.L887L 0.09 TCGA-5U-AB0F-01 20 3016331 3016331 G A PTPRA Missense_Mutation p.R674Q 0.11 deleterious(0) probably_damaging(1) TCGA-5U-AB0F-01 22 26693012 26693012 C T SEZ6L Silent p.D376D 0.20 TCGA-5U-AB0F-01 5 140594606 140594607 - A PCDHB13 Frame_Shift_Ins p.Q307Tfs*11 0.10 TCGA-5U-AB0F-01 5 145890909 145890909 C G TCERG1 3'UTR 0.09 TCGA-5U-AB0F-01 6 160218337 160218337 T A MRPL18 Silent p.T86T 0.06 TCGA-5U-AB0F-01 6 30104871 30104871 A G TRIM40 Missense_Mutation p.S20G 0.12 tolerated(0.33) benign(0.003) TCGA-5U-AB0F-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.08 deleterious(0.05) probably_damaging(0.992) TCGA-5U-AB0F-01 8 10754326 10754326 C A XKR6 3'UTR 0.11 TCGA-5U-AB0F-01 9 21859340 21859340 C T MTAP Silent p.N243N 0.11 TCGA-5U-AB0F-01 9 87342744 87342744 C T NTRK2 Silent p.H343H 0.08 TCGA-5U-AB0F-01 X 101092582 101092582 C T NXF5 Missense_Mutation p.V322M 0.09 deleterious(0.01) probably_damaging(0.941) TCGA-5U-AB0F-01 X 23934433 23934433 G A CXorf58 Missense_Mutation p.M137I 0.08 deleterious(0.01) benign(0.027) TCGA-5V-A9RR-01 10 105796368 105796368 T C COL17A1 Silent p.L1100L 0.25 TCGA-5V-A9RR-01 10 46961909 46961909 G C SYT15 3'Flank 0.05 TCGA-5V-A9RR-01 12 122498534 122498534 T G BCL7A 3'UTR 0.28 TCGA-5V-A9RR-01 12 80752501 80752501 A G OTOGL Missense_Mutation p.M2049V 0.35 deleterious(0.01) benign(0.1) TCGA-5V-A9RR-01 14 75052588 75052588 A C LTBP2 Missense_Mutation p.S267A 0.24 tolerated(0.77) benign(0) TCGA-5V-A9RR-01 16 68394548 68394548 A G SMPD3 3'UTR 0.21 TCGA-5V-A9RR-01 17 10419786 10419786 C T MYH1 Silent p.G58G 0.04 TCGA-5V-A9RR-01 17 20108473 20108473 G A SPECC1 Missense_Mutation p.A371T 0.09 deleterious(0) probably_damaging(0.999) TCGA-5V-A9RR-01 18 72999958 72999958 G A TSHZ1 Missense_Mutation p.D821N 0.25 deleterious(0) probably_damaging(0.988) TCGA-5V-A9RR-01 19 13340904 13340904 G A CACNA1A Silent p.P1840P 0.30 TCGA-5V-A9RR-01 1 151774396 151774396 C T LINGO4 Missense_Mutation p.C262Y 0.12 deleterious(0.02) possibly_damaging(0.879) TCGA-5V-A9RR-01 1 186275527 186275527 T C PRG4 Silent p.L226L 0.20 TCGA-5V-A9RR-01 1 76342640 76342640 A G MSH4 Missense_Mutation p.N442S 0.24 tolerated(0.79) benign(0.003) TCGA-5V-A9RR-01 3 122345684 122345684 A - PARP15 Frame_Shift_Del p.N416Tfs*9 0.12 TCGA-5V-A9RR-01 3 64502165 64502165 T G ADAMTS9 3'UTR 0.23 TCGA-5V-A9RR-01 4 129191532 129191532 C T PGRMC2 3'UTR 0.33 TCGA-5V-A9RR-01 4 25780763 25780763 C T SEL1L3 Nonsense_Mutation p.W840* 0.38 TCGA-5V-A9RR-01 4 68777016 68777016 A G TMPRSS11A 3'UTR 0.14 TCGA-5V-A9RR-01 5 158697618 158697618 C G UBLCP1 Missense_Mutation p.L139V 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-5V-A9RR-01 6 28358990 28358990 G A ZSCAN12 Silent p.H359H 0.13 TCGA-5V-A9RR-01 7 127240363 127240363 C G FSCN3 Silent p.A469A 0.19 TCGA-5V-A9RR-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.24 deleterious(0.05) probably_damaging(0.992) TCGA-5V-A9RR-01 8 3855580 3855580 G A CSMD1 Silent p.S221S 0.24 TCGA-5V-A9RR-01 9 87285831 87285831 G A NTRK2 Silent p.P56P 0.29 TCGA-5V-A9RR-01 X 138886758 138886758 C A ATP11C Missense_Mutation p.V146F 0.09 deleterious(0) probably_damaging(1) TCGA-5V-A9RR-01 X 92928438 92928438 A T NAP1L3 5'UTR 0.09 TCGA-X7-A8D6-01 16 10992527 10992527 C T CIITA Missense_Mutation p.A99V 0.04 deleterious(0) probably_damaging(0.933) TCGA-X7-A8D6-01 16 23504751 23504751 C A GGA2 Missense_Mutation p.G94V 0.13 deleterious(0) probably_damaging(1) TCGA-X7-A8D6-01 16 67979313 67979313 G T SLC12A4 Missense_Mutation p.S999R 0.19 tolerated(0.36) benign(0.142) TCGA-X7-A8D6-01 16 732223 732223 C T STUB1 Missense_Mutation p.P243L 0.16 deleterious(0) probably_damaging(0.999) TCGA-X7-A8D6-01 17 26950872 26950872 T C KIAA0100 Missense_Mutation p.K1622R 0.15 deleterious(0) probably_damaging(1) TCGA-X7-A8D6-01 3 1445056 1445056 T C CNTN6 Missense_Mutation p.I1014T 0.03 tolerated(0.5) benign(0) TCGA-X7-A8D6-01 3 43408450 43408450 G T ANO10 Missense_Mutation p.T644N 0.27 tolerated(0.06) benign(0.01) TCGA-X7-A8D6-01 3 54786630 54786630 G A CACNA2D3 Missense_Mutation p.R391H 0.07 deleterious(0) probably_damaging(0.998) TCGA-X7-A8D6-01 4 2251116 2251116 G T MXD4 3'UTR 0.15 TCGA-X7-A8D6-01 4 2951971 2951971 A G NOP14 Intron 0.12 TCGA-X7-A8D6-01 6 88234334 88234334 G A RARS2 Silent p.G305G 0.12 TCGA-X7-A8D6-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.03 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8D6-01 9 137330621 137330621 A T RXRA 3'Flank 0.06 TCGA-X7-A8D6-01 9 37740295 37740295 C T FRMPD1 Silent p.S590S 0.14 TCGA-X7-A8D7-01 10 47769116 47769116 G A AL603965.1 5'UTR 0.12 TCGA-X7-A8D7-01 18 67995127 67995127 T C SOCS6 3'UTR 0.05 TCGA-X7-A8D7-01 19 55526376 55526376 G C GP6 Missense_Mutation p.P313A 0.19 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-X7-A8D7-01 1 64643484 64643484 T C ROR1 Missense_Mutation p.L587P 0.12 deleterious(0) probably_damaging(1) TCGA-X7-A8D7-01 1 67878342 67878342 A C SERBP1 3'UTR 0.04 TCGA-X7-A8D7-01 22 20640874 20640874 T C AC011718.2 Intron 0.09 TCGA-X7-A8D7-01 3 185362116 185362116 A T IGF2BP2 3'UTR 0.07 TCGA-X7-A8D7-01 6 109005360 109005360 C T FOXO3 3'UTR 0.12 TCGA-X7-A8D7-01 8 43013794 43013794 G A HGSNAT Missense_Mutation p.S104N 0.05 tolerated(0.2) benign(0.008) TCGA-X7-A8D8-01 10 114204970 114204970 G A ZDHHC6 Silent p.A75A 0.16 TCGA-X7-A8D8-01 11 113102914 113102914 T C NCAM1 Silent p.P470P 0.20 TCGA-X7-A8D8-01 13 32821485 32821485 A G FRY Missense_Mutation p.N2285S 0.10 deleterious(0.04) probably_damaging(0.947) TCGA-X7-A8D8-01 13 84451862 84451862 G A SLITRK1 3'UTR 0.06 TCGA-X7-A8D8-01 14 55531485 55531485 C A MAPK1IP1L 3'UTR 0.20 TCGA-X7-A8D8-01 14 95236123 95236123 C A GSC Missense_Mutation p.R77L 0.42 tolerated(0.11) benign(0.247) TCGA-X7-A8D8-01 15 48594991 48594991 A G SLC12A1 Missense_Mutation p.Y1070C 0.07 deleterious(0) probably_damaging(0.999) TCGA-X7-A8D8-01 16 30615454 30615454 T C ZNF689 3'UTR 0.24 TCGA-X7-A8D8-01 18 43437954 43437954 C T EPG5 Missense_Mutation p.D2436N 0.14 tolerated(0.2) benign(0.178) TCGA-X7-A8D8-01 19 12904057 12904062 GTGTTT - JUNB 3'UTR 0.23 TCGA-X7-A8D8-01 1 156045439 156045439 T C MEX3A 3'UTR 0.07 TCGA-X7-A8D8-01 20 18794489 18794489 G A SCP2D1 Silent p.K10K 0.11 TCGA-X7-A8D8-01 2 113416617 113416617 A G SLC20A1 Missense_Mutation p.R332G 0.05 tolerated(0.39) benign(0.004) TCGA-X7-A8D8-01 2 141751564 141751564 A T LRP1B Missense_Mutation p.F882I 0.34 benign(0.014) TCGA-X7-A8D8-01 2 236617824 236617824 T A AGAP1 Missense_Mutation p.D55E 0.10 tolerated(0.29) benign(0.141) TCGA-X7-A8D8-01 2 239147433 239147433 C T HES6 3'UTR 0.48 TCGA-X7-A8D8-01 3 136068118 136068118 T C STAG1 Silent p.S1051S 0.36 TCGA-X7-A8D8-01 3 39186572 39186572 C G CSRNP1 Missense_Mutation p.E127D 0.44 deleterious(0) probably_damaging(0.998) TCGA-X7-A8D8-01 5 37065160 37065160 C T NIPBL 3'UTR 0.26 TCGA-X7-A8D8-01 5 63510131 63510131 T C RNF180 Silent p.T326T 0.09 TCGA-X7-A8D8-01 5 9630072 9630072 C A TAS2R1 Missense_Mutation p.G25C 0.25 deleterious(0) probably_damaging(1) TCGA-X7-A8D8-01 6 111710309 111710309 C T REV3L Missense_Mutation p.D288N 0.16 deleterious(0.04) benign(0.013) TCGA-X7-A8D8-01 7 100473200 100473200 T C SRRT 5'UTR 0.11 TCGA-X7-A8D8-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.26 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8D8-01 8 107763429 107763429 T C OXR1 3'Flank 0.28 TCGA-X7-A8D8-01 8 2832146 2832146 G A CSMD1 Missense_Mutation p.A2856V 0.13 benign(0.004) TCGA-X7-A8D8-01 9 21865654 21865654 C G MTAP 3'UTR 0.24 TCGA-X7-A8D8-01 9 98241284 98241284 C T PTCH1 Missense_Mutation p.E405K 0.10 tolerated(0.13) benign(0.042) TCGA-X7-A8D9-01 11 2437173 2437173 G T TRPM5 Missense_Mutation p.A364D 0.18 deleterious(0) probably_damaging(0.964) TCGA-X7-A8D9-01 11 9500019 9500019 G A ZNF143 Silent p.P152P 0.14 TCGA-X7-A8D9-01 12 123957036 123957036 A G RILPL1 3'UTR 0.21 TCGA-X7-A8D9-01 12 25254153 25254153 C T LRMP Silent p.H261H 0.20 TCGA-X7-A8D9-01 12 66788085 66788085 G A GRIP1 Missense_Mutation p.R626C 0.17 deleterious(0) probably_damaging(0.961) TCGA-X7-A8D9-01 13 114203809 114203809 A G TMCO3 Missense_Mutation p.I664V 0.56 tolerated(0.58) benign(0.012) TCGA-X7-A8D9-01 16 30995474 30995474 C T SETD1A 3'UTR 0.12 TCGA-X7-A8D9-01 17 16612768 16612768 A G CCDC144A Missense_Mutation p.Y466C 0.07 tolerated(0.2) probably_damaging(0.926) TCGA-X7-A8D9-01 19 10886517 10886517 C T DNM2 Missense_Mutation p.T175M 0.30 deleterious(0) probably_damaging(0.998) TCGA-X7-A8D9-01 19 1611718 1611718 G A TCF3 Silent p.A651A 0.20 TCGA-X7-A8D9-01 1 36385217 36385217 C T AGO1 3'UTR 0.17 TCGA-X7-A8D9-01 1 84703021 84703021 A G PRKACB 3'UTR 0.18 TCGA-X7-A8D9-01 1 9815280 9815280 C T CLSTN1 Missense_Mutation p.R111H 0.08 deleterious(0.01) benign(0.075) TCGA-X7-A8D9-01 2 138000058 138000058 C T THSD7B Missense_Mutation p.R728C 0.06 deleterious(0) possibly_damaging(0.885) TCGA-X7-A8D9-01 2 233244304 233244304 A G ALPP Missense_Mutation p.T131A 0.19 deleterious(0.03) possibly_damaging(0.779) TCGA-X7-A8D9-01 3 38627502 38627502 G A SCN5A Missense_Mutation p.P823S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-X7-A8D9-01 4 4214702 4214702 C T OTOP1 Missense_Mutation p.V145I 0.08 tolerated(0.47) benign(0.006) TCGA-X7-A8D9-01 5 132039269 132039269 G A KIF3A Missense_Mutation p.A424V 0.20 tolerated(0.27) benign(0.113) TCGA-X7-A8D9-01 5 173416294 173416294 C T C5orf47 Nonsense_Mutation p.Q10* 0.17 TCGA-X7-A8D9-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.14 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8D9-01 8 134488013 134488013 C T ST3GAL1 Silent p.L85L 0.12 TCGA-X7-A8D9-01 8 75737551 75737551 G A PI15 Missense_Mutation p.V23I 0.09 tolerated(0.21) benign(0.001) TCGA-X7-A8D9-01 9 131483608 131483608 C T ZDHHC12 Missense_Mutation p.R219H 0.17 deleterious(0) probably_damaging(0.991) TCGA-X7-A8D9-01 X 152616408 152616408 G A ZNF275 3'UTR 0.17 TCGA-X7-A8D9-01 X 153716218 153716218 G A SLC10A3 Silent p.V354V 0.12 TCGA-X7-A8DB-01 11 74547597 74547598 CC T RNF169 Frame_Shift_Del p.A650Vfs*38 0.09 TCGA-X7-A8DB-01 14 77942097 77942097 A T ISM2 Silent p.P519P 0.07 TCGA-X7-A8DB-01 18 66504269 66504269 A G CCDC102B Missense_Mutation p.K90R 0.07 deleterious(0) probably_damaging(0.997) TCGA-X7-A8DB-01 1 185266810 185266810 T C IVNS1ABP 3'UTR 0.05 TCGA-X7-A8DB-01 20 62221124 62221124 C T GMEB2 3'UTR 0.12 TCGA-X7-A8DB-01 3 48687919 48687919 C - CELSR3 Frame_Shift_Del p.A2156Pfs*38 0.13 TCGA-X7-A8DB-01 6 26108134 26108134 A - HIST1H1T Frame_Shift_Del p.L63Wfs*15 0.12 TCGA-X7-A8DB-01 7 150817216 150817216 G T AGAP3 Missense_Mutation p.R371L 0.25 deleterious(0) probably_damaging(0.951) TCGA-X7-A8DB-01 7 42950385 42950385 A T C7orf25 Missense_Mutation p.C97S 0.15 tolerated(0.78) possibly_damaging(0.467) TCGA-X7-A8DC-01 11 1619680 1619680 T C KRTAP5-2 5'Flank 0.05 TCGA-X7-A8DC-01 11 17531992 17531992 C T USH1C Missense_Mutation p.R497H 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-X7-A8DC-01 11 6913662 6913662 C T OR2D2 Missense_Mutation p.E24K 0.18 deleterious(0.05) benign(0) TCGA-X7-A8DC-01 12 120128223 120128223 C T CIT Silent p.E1973E 0.05 TCGA-X7-A8DC-01 12 1748920 1748920 C T WNT5B Silent p.C133C 0.06 TCGA-X7-A8DC-01 13 26594176 26594176 A T ATP8A2 3'UTR 0.05 TCGA-X7-A8DC-01 14 31582558 31582558 C G HECTD1 Missense_Mutation p.V1997L 0.10 deleterious(0.01) possibly_damaging(0.846) TCGA-X7-A8DC-01 15 75676700 75676700 C T SIN3A Missense_Mutation p.G1034R 0.08 deleterious(0) possibly_damaging(0.907) TCGA-X7-A8DC-01 17 28961296 28961296 C T LRRC37BP1 RNA 0.09 TCGA-X7-A8DC-01 17 4069699 4069699 C T ANKFY1 3'UTR 0.10 TCGA-X7-A8DC-01 18 47810262 47810262 A G CXXC1 Splice_Site p.X475_splice 0.06 TCGA-X7-A8DC-01 18 67672465 67672465 T C RTTN Silent p.R2188R 0.15 TCGA-X7-A8DC-01 19 50168026 50168026 C T IRF3 Missense_Mutation p.V24M 0.07 deleterious(0) probably_damaging(0.999) TCGA-X7-A8DC-01 19 7687484 7687484 G A XAB2 Missense_Mutation p.R479C 0.11 deleterious(0.02) benign(0.158) TCGA-X7-A8DC-01 1 27677815 27677815 G A SYTL1 Missense_Mutation p.A411T 0.07 tolerated(0.21) benign(0.082) TCGA-X7-A8DC-01 1 31732622 31732622 C A SNRNP40 3'UTR 0.14 TCGA-X7-A8DC-01 20 19941396 19941396 G A RIN2 Missense_Mutation p.R184H 0.07 tolerated(0.62) probably_damaging(0.972) TCGA-X7-A8DC-01 3 122630876 122630876 G A SEMA5B Silent p.D1033D 0.19 TCGA-X7-A8DC-01 5 149109864 149109864 C T PPARGC1B 5'Flank 0.25 TCGA-X7-A8DC-01 6 10764382 10764382 A T MAK 3'UTR 0.10 TCGA-X7-A8DC-01 6 41712417 41712417 G A PGC Silent p.Y63Y 0.06 TCGA-X7-A8DC-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.07 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8DC-01 8 20106947 20106947 G A LZTS1 3'UTR 0.11 TCGA-X7-A8DC-01 9 114475449 114475449 G A C9orf84 Silent p.L743L 0.05 TCGA-X7-A8DC-01 9 131343215 131343215 C T SPTAN1 Silent p.S446S 0.08 TCGA-X7-A8DD-01 10 117706890 117706890 T C ATRNL1 3'UTR 0.04 TCGA-X7-A8DD-01 12 57926411 57926411 C T DCTN2 Missense_Mutation p.V295M 0.09 tolerated(0.86) benign(0.069) TCGA-X7-A8DD-01 14 81609679 81609679 T G TSHR Missense_Mutation p.L426R 0.05 deleterious(0) probably_damaging(0.987) TCGA-X7-A8DD-01 15 79051872 79051872 A G ADAMTS7 Missense_Mutation p.L1651P 0.16 tolerated(0.06) benign(0.037) TCGA-X7-A8DD-01 16 23160099 23160099 G A USP31 Missense_Mutation p.R165W 0.11 deleterious(0.02) probably_damaging(0.932) TCGA-X7-A8DD-01 16 58701347 58701347 C T SLC38A7 Missense_Mutation p.G444E 0.09 deleterious(0) probably_damaging(1) TCGA-X7-A8DD-01 16 73092895 73092895 C T RP11-346C20.4 5'Flank 0.31 TCGA-X7-A8DD-01 19 2477671 2477671 T C GADD45B 3'UTR 0.17 TCGA-X7-A8DD-01 1 249150609 249150609 G T ZNF692 Silent p.P184P 0.16 TCGA-X7-A8DD-01 1 33318768 33318768 G A S100PBP Splice_Site p.X371_splice 0.17 TCGA-X7-A8DD-01 3 48465753 48465753 G - PLXNB1 Frame_Shift_Del p.Q90Rfs*14 0.09 TCGA-X7-A8DD-01 5 140229771 140229771 C T PCDHA9 Missense_Mutation p.A564V 0.08 tolerated_low_confidence(0.24) benign(0) TCGA-X7-A8DD-01 5 153144153 153144153 C T GRIA1 Silent p.Y671Y 0.07 TCGA-X7-A8DD-01 5 66461629 66461629 C T MAST4 Missense_Mutation p.P2208S 0.17 benign(0.013) TCGA-X7-A8DD-01 7 100361820 100361820 G A ZAN Splice_Site p.X1423_splice 0.33 TCGA-X7-A8DD-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.04 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8DD-01 8 135725126 135725126 G T ZFAT 5'UTR 0.25 TCGA-X7-A8DD-01 8 97258111 97258111 C A MTERFD1 Nonsense_Mutation p.E292* 0.05 TCGA-X7-A8DD-01 8 97258112 97258112 C G MTERFD1 Silent p.L291L 0.05 TCGA-X7-A8DD-01 9 8317920 8317920 C T PTPRD Missense_Mutation p.R1898H 0.10 tolerated(0.07) probably_damaging(0.998) TCGA-X7-A8DE-01 12 111788244 111788245 AC - CUX2 3'UTR 0.10 TCGA-X7-A8DE-01 12 124330694 124330694 T C DNAH10 Missense_Mutation p.L1818P 0.14 probably_damaging(0.994) TCGA-X7-A8DE-01 15 78471914 78471914 G T ACSBG1 Missense_Mutation p.P488T 0.19 tolerated(0.1) benign(0.191) TCGA-X7-A8DE-01 16 20387485 20387485 G A PDILT Nonsense_Mutation p.R150* 0.07 TCGA-X7-A8DE-01 16 30582959 30582959 G A ZNF688 5'UTR 0.12 TCGA-X7-A8DE-01 16 75563956 75563956 C T CHST5 Silent p.T109T 0.17 TCGA-X7-A8DE-01 17 78188036 78188036 C T SGSH Missense_Mutation p.G200R 0.17 tolerated(0.18) probably_damaging(0.981) TCGA-X7-A8DE-01 18 43329867 43329867 G A SLC14A1 Missense_Mutation p.R430H 0.07 deleterious(0) probably_damaging(0.957) TCGA-X7-A8DE-01 19 1435063 1435063 G C DAZAP1 3'UTR 0.07 TCGA-X7-A8DE-01 19 38795064 38795064 A G C19orf33 Silent p.G24G 0.10 TCGA-X7-A8DE-01 1 147084715 147084715 T C BCL9 Silent p.R29R 0.07 TCGA-X7-A8DE-01 2 197750578 197750578 G A PGAP1 Silent p.C400C 0.06 TCGA-X7-A8DE-01 3 11599404 11599405 - A VGLL4 3'Flank 0.07 TCGA-X7-A8DE-01 3 4535104 4535104 A T ITPR1 5'UTR 0.08 TCGA-X7-A8DE-01 3 47953184 47953184 C A MAP4 Intron 0.15 TCGA-X7-A8DE-01 6 33043844 33043844 C - HLA-DPB1 Frame_Shift_Del p.R11Gfs*5 0.12 TCGA-X7-A8DE-01 6 76018547 76018547 C A FILIP1 Missense_Mutation p.A1168S 0.08 tolerated(0.46) benign(0.182) TCGA-X7-A8DE-01 7 116559162 116559162 A T CAPZA2 3'UTR 0.12 TCGA-X7-A8DE-01 7 73011801 73011801 G T MLXIPL Silent p.P438P 0.22 TCGA-X7-A8DE-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.06 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8DE-01 8 116424772 116424773 - T TRPS1 3'UTR 0.10 TCGA-X7-A8DE-01 9 139879281 139879281 C T LCNL1 Missense_Mutation p.R105W 0.07 tolerated(0.07) possibly_damaging(0.898) TCGA-X7-A8DE-01 9 35075059 35075059 G A FANCG Nonsense_Mutation p.Q501* 0.09 TCGA-X7-A8DE-01 X 77150852 77150852 A G MAGT1 Missense_Mutation p.L51P 0.14 deleterious(0.01) benign(0.346) TCGA-X7-A8DF-01 14 101034305 101034305 A G BEGAIN 5'UTR 0.25 TCGA-X7-A8DF-01 16 30900228 30900228 G T BCL7C Missense_Mutation p.P161T 0.19 deleterious(0) probably_damaging(0.981) TCGA-X7-A8DF-01 17 2587105 2587105 G C PAFAH1B1 3'UTR 0.17 TCGA-X7-A8DF-01 17 34854823 34854823 C T ZNHIT3 3'Flank 0.08 TCGA-X7-A8DF-01 3 27418203 27418203 G A SLC4A7 3'UTR 0.12 TCGA-X7-A8DF-01 5 172342020 172342020 C G ERGIC1 Intron 0.18 TCGA-X7-A8DF-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.09 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8DF-01 8 20003223 20003223 G A SLC18A1 3'UTR 0.14 TCGA-X7-A8DF-01 9 96026294 96026294 C A WNK2 Silent p.P1225P 0.08 TCGA-X7-A8DG-01 3 124174076 124174076 A - KALRN Frame_Shift_Del p.G1202Afs*8 0.09 TCGA-X7-A8DG-01 5 1466912 1466912 C T LPCAT1 Missense_Mutation p.D458N 0.09 tolerated(0.52) benign(0.014) TCGA-X7-A8DG-01 5 149450087 149450087 C T CSF1R Missense_Mutation p.G377D 0.08 deleterious(0) probably_damaging(1) TCGA-X7-A8DG-01 8 27534249 27534249 A C SCARA3 3'Flank 0.24 TCGA-X7-A8DG-01 9 32631815 32631815 G A TAF1L Missense_Mutation p.R1255W 0.05 deleterious(0) probably_damaging(0.998) TCGA-X7-A8DI-01 10 35927816 35927816 C T FZD8 3'UTR 0.07 TCGA-X7-A8DI-01 11 89424067 89424067 C T FOLH1B RNA 0.06 TCGA-X7-A8DI-01 12 51115059 51115059 A G DIP2B Missense_Mutation p.T1016A 0.05 tolerated(0.93) benign(0.005) TCGA-X7-A8DI-01 17 60021750 60021750 A T MED13 3'UTR 0.10 TCGA-X7-A8DI-01 18 59206323 59206323 C A CDH20 Missense_Mutation p.P492Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-X7-A8DI-01 19 53207458 53207458 G T ZNF611 3'UTR 0.16 TCGA-X7-A8DI-01 19 56089650 56089650 G T ZNF579 Silent p.R452R 0.17 TCGA-X7-A8DI-01 1 77876675 77876675 G A AK5 Missense_Mutation p.D301N 0.07 deleterious(0) probably_damaging(0.993) TCGA-X7-A8DI-01 3 135870878 135870878 T C MSL2 Missense_Mutation p.N282S 0.07 tolerated(0.79) benign(0.001) TCGA-X7-A8DI-01 3 156876755 156876755 T C CCNL1 Missense_Mutation p.M130V 0.08 deleterious(0) possibly_damaging(0.675) TCGA-X7-A8DI-01 3 183696414 183696414 T A ABCC5 Silent p.I391I 0.05 TCGA-X7-A8DI-01 3 56655773 56655773 G T CCDC66 3'UTR 0.15 TCGA-X7-A8DI-01 3 63981387 63981387 C G ATXN7 Missense_Mutation p.A630G 0.12 deleterious(0) possibly_damaging(0.516) TCGA-X7-A8DI-01 4 70361046 70361046 G A UGT2B4 Silent p.Y178Y 0.09 TCGA-X7-A8DI-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.07 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8DI-01 9 130869324 130869324 G A SLC25A25 Nonsense_Mutation p.W398* 0.11 TCGA-X7-A8DI-01 X 48317079 48317079 C T SLC38A5 3'UTR 0.06 TCGA-X7-A8DJ-01 11 124266673 124266673 G C OR8B3 Missense_Mutation p.T192S 0.08 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-X7-A8DJ-01 11 6477334 6477334 C T TRIM3 Missense_Mutation p.V501M 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-X7-A8DJ-01 14 23587968 23587968 C T CEBPE Silent p.G111G 0.10 TCGA-X7-A8DJ-01 19 36124015 36124015 C T RBM42 Missense_Mutation p.P182L 0.11 tolerated(0.18) probably_damaging(0.999) TCGA-X7-A8DJ-01 1 175046945 175046945 T A TNN Missense_Mutation p.C131S 0.22 deleterious(0.04) probably_damaging(0.963) TCGA-X7-A8DJ-01 20 17608289 17608289 G A RRBP1 Missense_Mutation p.R497C 0.15 deleterious(0) possibly_damaging(0.835) TCGA-X7-A8DJ-01 2 15542383 15542383 T C NBAS Missense_Mutation p.I994V 0.09 tolerated(1) benign(0.004) TCGA-X7-A8DJ-01 3 113658806 113658806 T C GRAMD1C Missense_Mutation p.F589L 0.07 tolerated(0.34) benign(0.007) TCGA-X7-A8DJ-01 3 123699108 123699108 T G ROPN1 Intron 0.25 TCGA-X7-A8DJ-01 3 15084513 15084513 T C NR2C2 Nonstop_Mutation p.*616Qext*35 0.10 TCGA-X7-A8DJ-01 3 7782044 7782044 G C GRM7 Missense_Mutation p.S900T 0.15 tolerated_low_confidence(0.45) benign(0.01) TCGA-X7-A8DJ-01 5 140202974 140202974 C T PCDHA5 Silent p.D538D 0.05 TCGA-X7-A8DJ-01 7 107824945 107824945 A G NRCAM Missense_Mutation p.Y717H 0.21 deleterious(0) benign(0.227) TCGA-X7-A8DJ-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.09 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8DJ-01 8 86573068 86573068 G A REXO1L1P 3'UTR 0.14 TCGA-X7-A8M0-01 10 103542663 103542663 T A NPM3 Missense_Mutation p.H46L 0.07 tolerated(0.08) benign(0.084) TCGA-X7-A8M0-01 10 108339194 108339194 C A SORCS1 Missense_Mutation p.A1102S 0.14 deleterious(0.01) probably_damaging(1) TCGA-X7-A8M0-01 11 55111501 55111501 T C OR4A16 Silent p.I275I 0.24 TCGA-X7-A8M0-01 14 104488496 104488496 C T TDRD9 Missense_Mutation p.A812V 0.16 tolerated(0.08) possibly_damaging(0.831) TCGA-X7-A8M0-01 14 22887703 22887703 C T TRDV2 5'Flank 0.29 TCGA-X7-A8M0-01 16 3109078 3109078 G - MMP25 Frame_Shift_Del p.G558Vfs*2 0.09 TCGA-X7-A8M0-01 16 57507451 57507451 A G DOK4 Intron 0.11 TCGA-X7-A8M0-01 19 29213667 29213667 T A AC005307.3 RNA 0.30 TCGA-X7-A8M0-01 1 228473872 228473872 A G OBSCN Missense_Mutation p.Y3462C 0.19 probably_damaging(1) TCGA-X7-A8M0-01 1 47144022 47144022 T C EFCAB14 3'UTR 0.16 TCGA-X7-A8M0-01 22 18314813 18314813 G T MICAL3 Silent p.P954P 0.14 TCGA-X7-A8M0-01 2 173848262 173848262 A G RAPGEF4 Missense_Mutation p.Y348C 0.12 deleterious(0) probably_damaging(0.954) TCGA-X7-A8M0-01 2 177034218 177034218 C T HOXD3 Silent p.L126L 0.11 TCGA-X7-A8M0-01 2 20649031 20649031 C T RHOB 3'UTR 0.15 TCGA-X7-A8M0-01 3 126386168 126386168 G T NUP210P1 RNA 0.18 TCGA-X7-A8M0-01 3 130290046 130290046 T C COL6A6 Missense_Mutation p.L929P 0.12 deleterious(0.03) probably_damaging(1) TCGA-X7-A8M0-01 4 115760705 115760705 C T NDST4 Splice_Site p.X706_splice 0.16 TCGA-X7-A8M0-01 4 140310458 140310458 A G NAA15 3'UTR 0.15 TCGA-X7-A8M0-01 6 37339295 37339295 A T RNF8 Missense_Mutation p.E328V 0.07 deleterious(0.01) probably_damaging(0.915) TCGA-X7-A8M0-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.15 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8M0-01 7 90042873 90042873 C T CLDN12 3'UTR 0.05 TCGA-X7-A8M0-01 8 59060618 59060618 G T FAM110B 3'UTR 0.16 TCGA-X7-A8M0-01 9 95599312 95599312 C A ANKRD19P RNA 0.17 TCGA-X7-A8M0-01 X 155007240 155007240 C A SPRY3 3'UTR 0.09 TCGA-X7-A8M0-01 X 73961372 73961372 C A KIAA2022 Missense_Mutation p.C1007F 0.08 deleterious(0.01) possibly_damaging(0.804) TCGA-X7-A8M1-01 13 25274967 25274967 C A ATP12A Silent p.S602S 0.23 TCGA-X7-A8M1-01 14 106311905 106311905 G A IGHD Missense_Mutation p.T36M 0.22 tolerated(0.09) benign(0.003) TCGA-X7-A8M1-01 15 59523988 59523988 G A MYO1E Silent p.H141H 0.20 TCGA-X7-A8M1-01 16 2126081 2126081 C G TSC2 Nonsense_Mutation p.Y884* 0.09 TCGA-X7-A8M1-01 16 57056227 57056227 G A NLRC5 Missense_Mutation p.G119S 0.12 tolerated(0.06) possibly_damaging(0.521) TCGA-X7-A8M1-01 17 10248531 10248531 C T MYH13 Silent p.E524E 0.22 TCGA-X7-A8M1-01 17 40169428 40169428 C T DNAJC7 Missense_Mutation p.A3T 0.10 tolerated_low_confidence(0.18) unknown(0) TCGA-X7-A8M1-01 18 3742433 3742433 G A DLGAP1 Missense_Mutation p.R418W 0.06 deleterious(0.02) probably_damaging(0.983) TCGA-X7-A8M1-01 19 19744992 19744992 C T GMIP Missense_Mutation p.A698T 0.14 tolerated(0.1) benign(0.021) TCGA-X7-A8M1-01 19 23835789 23835789 T C ZNF675 3'UTR 0.80 TCGA-X7-A8M1-01 19 36640675 36640675 T C CAPNS1 Intron 0.13 TCGA-X7-A8M1-01 19 42462494 42462494 A - RABAC1 Frame_Shift_Del p.F104Sfs*23 0.14 TCGA-X7-A8M1-01 1 160209860 160209860 C T DCAF8 Missense_Mutation p.R117H 0.10 tolerated(0.55) benign(0.007) TCGA-X7-A8M1-01 1 186052062 186052062 T C HMCN1 Silent p.S2951S 0.16 TCGA-X7-A8M1-01 1 215956205 215956205 C T USH2A Missense_Mutation p.S3487N 0.05 probably_damaging(0.992) TCGA-X7-A8M1-01 2 71738996 71738996 G A DYSF Silent p.P135P 0.28 TCGA-X7-A8M1-01 3 119013558 119013558 G A ARHGAP31 5'UTR 0.43 TCGA-X7-A8M1-01 4 184577088 184577088 A T RWDD4 Silent p.I17I 0.24 TCGA-X7-A8M1-01 7 101201089 101201089 C T COL26A1 3'UTR 0.16 TCGA-X7-A8M1-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.16 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8M1-01 7 82578982 82578982 A T PCLO Missense_Mutation p.V3641E 0.21 unknown(0) TCGA-X7-A8M1-01 8 79514950 79514950 T A PKIA 3'UTR 0.10 TCGA-X7-A8M1-01 9 138378363 138378363 C T PPP1R26 Silent p.D669D 0.22 TCGA-X7-A8M1-01 X 134713737 134713737 A G DDX26B Missense_Mutation p.H678R 0.29 tolerated(0.52) benign(0.047) TCGA-X7-A8M3-01 10 100219308 100219308 G T HPSE2 3'UTR 0.21 TCGA-X7-A8M3-01 11 61569804 61569804 G A FADS1 3'UTR 0.27 TCGA-X7-A8M3-01 11 62931391 62931391 C A SLC22A25 Nonsense_Mutation p.E517* 0.88 TCGA-X7-A8M3-01 11 75298357 75298357 G T MAP6 Missense_Mutation p.T730K 0.94 tolerated_low_confidence(0.07) benign(0.008) TCGA-X7-A8M3-01 12 9353546 9353546 C A PZP Silent p.V204V 1.00 TCGA-X7-A8M3-01 13 37393923 37393923 C G RFXAP Nonsense_Mutation p.Y143* 1.00 TCGA-X7-A8M3-01 14 103193630 103193630 C T RCOR1 3'UTR 0.09 TCGA-X7-A8M3-01 14 57876969 57876969 G T NAA30 3'UTR 0.33 TCGA-X7-A8M3-01 15 49135615 49135615 G T SHC4 Missense_Mutation p.H492N 0.86 tolerated(0.24) benign(0.014) TCGA-X7-A8M3-01 15 91542961 91542961 C T VPS33B Missense_Mutation p.G574S 0.21 deleterious(0) probably_damaging(1) TCGA-X7-A8M3-01 16 67470564 67470564 G A HSD11B2 Silent p.L292L 0.90 TCGA-X7-A8M3-01 16 81185508 81185508 G T PKD1L2 RNA 0.17 TCGA-X7-A8M3-01 17 26946946 26946946 G T KIAA0100 Missense_Mutation p.Q1818K 0.24 deleterious(0.04) probably_damaging(1) TCGA-X7-A8M3-01 17 4803850 4803850 G T C17orf107 3'UTR 0.87 TCGA-X7-A8M3-01 17 48917889 48917889 T C WFIKKN2 Missense_Mutation p.F414L 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-X7-A8M3-01 17 61951037 61951037 A T CSH2 5'UTR 0.16 TCGA-X7-A8M3-01 17 73870798 73870798 G T TRIM47 Missense_Mutation p.F561L 0.20 deleterious(0) probably_damaging(0.996) TCGA-X7-A8M3-01 17 80115779 80115779 G A CCDC57 Missense_Mutation p.P696S 0.11 tolerated(0.1) possibly_damaging(0.728) TCGA-X7-A8M3-01 19 22847765 22847765 C T ZNF492 Nonsense_Mutation p.Q432* 0.41 TCGA-X7-A8M3-01 19 41743942 41743942 C A AXL Missense_Mutation p.Q293K 0.47 tolerated(0.91) benign(0.005) TCGA-X7-A8M3-01 1 160455977 160455977 C A SLAMF6 3'UTR 0.17 TCGA-X7-A8M3-01 1 183896683 183896684 - T RGL1 3'UTR 0.17 TCGA-X7-A8M3-01 1 27238304 27238304 G T NR0B2 3'UTR 0.29 TCGA-X7-A8M3-01 1 880439 880439 T C NOC2L Missense_Mutation p.E714G 0.25 tolerated(0.15) benign(0.006) TCGA-X7-A8M3-01 1 89446122 89446122 G T RBMXL1 3'UTR 0.24 TCGA-X7-A8M3-01 20 57576662 57576662 G T CTSZ Silent p.S115S 0.17 TCGA-X7-A8M3-01 22 20458238 20458238 G T RIMBP3 Missense_Mutation p.H1022N 0.19 deleterious(0) probably_damaging(0.999) TCGA-X7-A8M3-01 22 30681675 30681675 C A GATSL3 Silent p.V308V 0.43 TCGA-X7-A8M3-01 22 39069240 39069240 G T CBY1 Nonstop_Mutation p.*127Lext*32 0.33 TCGA-X7-A8M3-01 2 232952373 232952373 C A DIS3L2 Silent p.I181I 0.92 TCGA-X7-A8M3-01 2 33488415 33488415 C A LTBP1 Missense_Mutation p.S858Y 1.00 deleterious(0) probably_damaging(0.99) TCGA-X7-A8M3-01 2 47132657 47132657 T C MCFD2 Missense_Mutation p.D129G 0.82 deleterious(0) probably_damaging(1) TCGA-X7-A8M3-01 3 119204216 119204216 C A POGLUT1 Missense_Mutation p.A207E 0.97 deleterious(0) probably_damaging(0.962) TCGA-X7-A8M3-01 3 133099005 133099005 C T TMEM108 Silent p.T150T 0.20 TCGA-X7-A8M3-01 3 45959516 45959516 G T FYCO1 3'UTR 0.39 TCGA-X7-A8M3-01 4 106190854 106190854 T C TET2 Missense_Mutation p.C1378R 0.94 deleterious(0) probably_damaging(0.996) TCGA-X7-A8M3-01 5 122729053 122729053 G A CEP120 Missense_Mutation p.R251C 0.46 deleterious(0) probably_damaging(0.997) TCGA-X7-A8M3-01 5 158523987 158523987 C A EBF1 Nonsense_Mutation p.E96* 0.39 TCGA-X7-A8M3-01 5 176813106 176813106 C T SLC34A1 Silent p.A76A 0.08 TCGA-X7-A8M3-01 5 177036622 177036622 G A B4GALT7 Missense_Mutation p.G304R 0.35 deleterious(0.01) probably_damaging(1) TCGA-X7-A8M3-01 5 180004706 180004706 C A CNOT6 3'UTR 0.41 TCGA-X7-A8M3-01 5 64868114 64868114 G - PPWD1 Splice_Site p.X323_splice 0.32 TCGA-X7-A8M3-01 6 130425690 130425690 C G L3MBTL3 Missense_Mutation p.A619G 0.91 tolerated(0.43) benign(0) TCGA-X7-A8M3-01 6 25701641 25701641 G T SCGN 3'UTR 0.80 TCGA-X7-A8M3-01 6 40347300 40347300 G T TDRG1 RNA 0.81 TCGA-X7-A8M3-01 6 57048769 57048769 C G BAG2 Nonsense_Mutation p.Y139* 0.09 TCGA-X7-A8M3-01 7 123488154 123488154 C T HYAL4 5'UTR 0.54 TCGA-X7-A8M3-01 9 32543745 32543745 G A TOPORS Nonsense_Mutation p.R260* 0.47 TCGA-X7-A8M3-01 9 37002692 37002693 CC A PAX5 Frame_Shift_Del p.G186Sfs*92 0.12 TCGA-X7-A8M3-01 X 101581401 101581401 C T NXF2 Silent p.P618P 0.19 TCGA-X7-A8M3-01 X 109764188 109764188 A G TDGF1P3 RNA 0.34 TCGA-X7-A8M3-01 X 133560103 133560103 G T PHF6 3'UTR 0.35 TCGA-X7-A8M3-01 X 153696250 153696250 C A PLXNA3 Nonsense_Mutation p.Y1242* 0.20 TCGA-X7-A8M3-01 X 35820519 35820519 G T MAGEB16 Missense_Mutation p.C69F 0.41 tolerated(0.2) benign(0.024) TCGA-X7-A8M3-01 X 83359602 83359602 C A RPS6KA6 Missense_Mutation p.D507Y 0.48 deleterious(0) probably_damaging(0.993) TCGA-X7-A8M4-01 10 13043209 13043209 A T CCDC3 Missense_Mutation p.F121Y 0.09 tolerated(0.38) benign(0.031) TCGA-X7-A8M4-01 12 6840332 6840332 C A COPS7A 3'UTR 0.14 TCGA-X7-A8M4-01 15 75562458 75562458 G A GOLGA6C Missense_Mutation p.G667E 0.06 tolerated(0.06) possibly_damaging(0.526) TCGA-X7-A8M4-01 16 1827257 1827257 C T SPSB3 Silent p.P303P 0.12 TCGA-X7-A8M4-01 16 3535536 3535536 C T NAA60 3'UTR 0.09 TCGA-X7-A8M4-01 22 41829924 41829924 A T TOB2 3'UTR 0.06 TCGA-X7-A8M4-01 2 99241863 99241863 A G MGAT4A 3'UTR 0.09 TCGA-X7-A8M4-01 3 49936337 49936337 C T MST1R Missense_Mutation p.R504H 0.06 tolerated(0.22) probably_damaging(0.982) TCGA-X7-A8M4-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.06 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8M4-01 8 11644539 11644539 A T NEIL2 3'UTR 0.18 TCGA-X7-A8M5-01 10 101578955 101578955 C T ABCC2 Missense_Mutation p.A850V 0.30 tolerated(0.14) benign(0.363) TCGA-X7-A8M5-01 10 51026398 51026398 A C PARG 3'UTR 0.07 TCGA-X7-A8M5-01 10 85958837 85958837 C T CDHR1 Missense_Mutation p.P133L 0.06 deleterious(0) probably_damaging(1) TCGA-X7-A8M5-01 11 117789358 117789358 G T TMPRSS13 Silent p.R73R 0.30 TCGA-X7-A8M5-01 11 1769071 1769071 C T RP11-295K3.1 Silent p.A321A 0.17 TCGA-X7-A8M5-01 12 100732436 100732436 C T SCYL2 Missense_Mutation p.S759F 0.27 tolerated(0.63) benign(0.219) TCGA-X7-A8M5-01 14 24807633 24807633 G A RIPK3 Silent p.V204V 0.30 TCGA-X7-A8M5-01 14 73640274 73640274 A C PSEN1 Silent p.L113L 0.25 TCGA-X7-A8M5-01 15 65936780 65936782 AGA - SLC24A1 In_Frame_Del p.K691del 0.17 TCGA-X7-A8M5-01 15 76030437 76030437 G A AC019294.1 Missense_Mutation p.A21T 0.17 tolerated_low_confidence(0.31) possibly_damaging(0.691) TCGA-X7-A8M5-01 15 76030438 76030438 C G AC019294.1 Missense_Mutation p.A21G 0.17 tolerated_low_confidence(0.4) possibly_damaging(0.578) TCGA-X7-A8M5-01 16 21289563 21289563 C T CRYM Missense_Mutation p.V4I 0.25 tolerated(0.44) benign(0) TCGA-X7-A8M5-01 17 27044704 27044704 C A RAB34 Intron 0.43 TCGA-X7-A8M5-01 17 30551962 30551962 G A RHOT1 3'UTR 0.26 TCGA-X7-A8M5-01 17 73775230 73775230 C A H3F3B Missense_Mutation p.R9L 0.25 deleterious_low_confidence(0.01) benign(0.013) TCGA-X7-A8M5-01 19 2244764 2244764 G A SF3A2 Silent p.K77K 0.07 TCGA-X7-A8M5-01 19 45978394 45978394 C T FOSB 3'UTR 0.18 TCGA-X7-A8M5-01 19 9325421 9325421 G A OR7D4 Silent p.F31F 0.24 TCGA-X7-A8M5-01 1 212792643 212792643 C - ATF3 Intron 0.25 TCGA-X7-A8M5-01 1 34164385 34164385 C T CSMD2 Missense_Mutation p.R1258Q 0.33 deleterious(0) probably_damaging(0.99) TCGA-X7-A8M5-01 1 9324428 9324428 C T H6PD Missense_Mutation p.L626F 0.30 tolerated(0.09) benign(0.151) TCGA-X7-A8M5-01 20 34761684 34761684 A G EPB41L1 Splice_Site 0.19 TCGA-X7-A8M5-01 22 18096014 18096014 C T ATP6V1E1 Missense_Mutation p.E58K 0.31 deleterious(0) possibly_damaging(0.512) TCGA-X7-A8M5-01 2 179417841 179417841 T G TTN Missense_Mutation p.K29929T 0.21 TCGA-X7-A8M5-01 2 179605611 179605611 T C TTN Missense_Mutation p.I4117V 0.21 TCGA-X7-A8M5-01 2 179605613 179605613 G A TTN Missense_Mutation p.S4116F 0.22 TCGA-X7-A8M5-01 3 196296068 196296068 C T FBXO45 Silent p.H71H 0.16 TCGA-X7-A8M5-01 3 47286394 47286394 A G KIF9 Silent p.D467D 0.26 TCGA-X7-A8M5-01 4 155531219 155531219 C G FGG Missense_Mutation p.D178H 0.23 deleterious(0) probably_damaging(1) TCGA-X7-A8M5-01 4 26322254 26322256 CTC - RBPJ Intron 0.30 TCGA-X7-A8M5-01 4 8229317 8229317 G A SH3TC1 Silent p.L632L 0.22 TCGA-X7-A8M5-01 6 106552868 106552868 A G PRDM1 Missense_Mutation p.K278R 0.27 tolerated(0.32) benign(0.009) TCGA-X7-A8M5-01 6 30633356 30633356 C T DHX16 Missense_Mutation p.R274Q 0.24 tolerated(0.15) unknown(0) TCGA-X7-A8M5-01 6 74227391 74227391 T G EEF1A1 3'UTR 0.20 TCGA-X7-A8M5-01 7 128610261 128610261 G C TNPO3 Missense_Mutation p.P847A 0.18 tolerated(0.11) benign(0.014) TCGA-X7-A8M5-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.26 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8M5-01 8 141572626 141572626 T C AGO2 Silent p.S148S 0.34 TCGA-X7-A8M5-01 8 37795248 37795248 A G GOT1L1 Missense_Mutation p.V106A 0.36 deleterious(0.02) possibly_damaging(0.747) TCGA-X7-A8M5-01 8 51314864 51314864 A T SNTG1 Missense_Mutation p.Q41L 0.17 tolerated(0.17) benign(0.225) TCGA-X7-A8M5-01 9 116813046 116813046 C - ZNF618 3'UTR 0.09 TCGA-X7-A8M5-01 9 27524943 27524943 A G IFNK Silent p.L203L 0.30 TCGA-X7-A8M5-01 X 125299320 125299320 C A DCAF12L2 Missense_Mutation p.W196C 0.37 deleterious(0.02) benign(0.078) TCGA-X7-A8M5-01 X 73960473 73960473 C T KIAA2022 Missense_Mutation p.D1307N 0.17 tolerated(0.22) benign(0.048) TCGA-X7-A8M5-01 X 73961545 73961545 C A KIAA2022 Silent p.L949L 0.33 TCGA-X7-A8M5-01 X 77160815 77160815 A T COX7B 3'UTR 0.21 TCGA-X7-A8M6-01 11 30915917 30915917 C T DCDC1 Missense_Mutation p.A1591T 0.10 tolerated(0.06) possibly_damaging(0.682) TCGA-X7-A8M6-01 16 16208680 16208680 G A ABCC1 Missense_Mutation p.R1046H 0.12 deleterious(0.03) probably_damaging(0.957) TCGA-X7-A8M6-01 17 60788603 60788603 C G MARCH10 Missense_Mutation p.E773Q 0.14 tolerated(0.11) benign(0.093) TCGA-X7-A8M6-01 19 15383856 15383856 C - BRD4 Frame_Shift_Del p.D19Mfs*3 0.09 TCGA-X7-A8M6-01 1 155014198 155014198 A G DCST1 Missense_Mutation p.N253D 0.08 tolerated(0.8) benign(0.001) TCGA-X7-A8M6-01 1 237664086 237664086 A T RYR2 Missense_Mutation p.D760V 0.05 benign(0.38) TCGA-X7-A8M6-01 4 175598314 175598314 G A GLRA3 Missense_Mutation p.A281V 0.08 deleterious(0) probably_damaging(0.991) TCGA-X7-A8M6-01 5 172517887 172517887 A - CREBRF Frame_Shift_Del p.K237Rfs*4 0.10 TCGA-X7-A8M6-01 6 109762255 109762255 C T PPIL6 5'UTR 0.07 TCGA-X7-A8M6-01 6 64292097 64292098 - T PTP4A1 3'UTR 0.27 TCGA-X7-A8M6-01 6 69723950 69723950 C T BAI3 Silent p.S650S 0.12 TCGA-X7-A8M6-01 X 70468060 70468060 G A ZMYM3 Missense_Mutation p.H643Y 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-X7-A8M8-01 14 24605510 24605510 G T PSME1 Missense_Mutation p.K13N 0.36 deleterious(0) benign(0.037) TCGA-X7-A8M8-01 16 2481144 2481144 G A CCNF Silent p.R10R 0.05 TCGA-X7-A8M8-01 1 167973157 167973157 A T DCAF6 Missense_Mutation p.L349F 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-X7-A8M8-01 1 205027366 205027366 G - CNTN2 Frame_Shift_Del p.G93Afs*6 0.11 TCGA-X7-A8M8-01 7 151504040 151504040 A G PRKAG2 Intron 0.12 TCGA-X7-A8M8-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.04 deleterious(0.05) probably_damaging(0.992) TCGA-X7-A8M8-01 8 27455706 27455706 G - CLU 3'UTR 0.09 TCGA-X7-A8M8-01 X 120094438 120094438 G A CT47A6 Silent p.A215A 0.09 TCGA-X7-A8M8-01 X 15342893 15342893 T C PIGA Missense_Mutation p.K361R 0.07 tolerated(0.3) benign(0.005) TCGA-XH-A853-01 12 130890754 130890754 G A RIMBP2 Missense_Mutation p.T987I 0.09 tolerated(0.07) benign(0.112) TCGA-XH-A853-01 12 58089770 58089770 C G OS9 Silent p.L143L 0.05 TCGA-XH-A853-01 14 103996429 103996429 C T TRMT61A Silent p.T38T 0.14 TCGA-XH-A853-01 14 21990119 21990119 A G SALL2 3'UTR 0.08 TCGA-XH-A853-01 1 1375605 1375605 T G VWA1 3'UTR 0.08 TCGA-XH-A853-01 1 57044568 57044568 A C PPAP2B Missense_Mutation p.L41R 0.10 tolerated(0.05) benign(0.372) TCGA-XH-A853-01 20 34067816 34067816 T C CEP250 Missense_Mutation p.L811P 0.09 probably_damaging(1) TCGA-XH-A853-01 20 58520093 58520093 G A FAM217B Silent p.S365S 0.09 TCGA-XH-A853-01 2 242610857 242610857 G A ATG4B Intron 0.06 TCGA-XH-A853-01 3 142037736 142037736 C T XRN1 Missense_Mutation p.V1471I 0.10 tolerated_low_confidence(0.37) benign(0.007) TCGA-XH-A853-01 3 49762010 49762010 T - IP6K1 3'UTR 0.08 TCGA-XH-A853-01 5 140589508 140589508 C T PCDHB12 Silent p.N343N 0.05 TCGA-XH-A853-01 5 50690050 50690050 C T ISL1 3'UTR 0.10 TCGA-XH-A853-01 7 30465298 30465298 C T NOD1 Missense_Mutation p.E940K 0.06 deleterious(0) probably_damaging(0.993) TCGA-XH-A853-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.03 deleterious(0.05) probably_damaging(0.992) TCGA-XH-A853-01 8 17502720 17502720 A C MTUS1 3'UTR 0.04 TCGA-XH-A853-01 8 75757677 75757677 G A PI15 Missense_Mutation p.V196I 0.06 tolerated(0.1) benign(0.015) TCGA-XH-A853-01 9 133762957 133762957 C A ABL1 3'Flank 0.22 TCGA-XH-A853-01 X 106769888 106769888 G A FRMPD3 Missense_Mutation p.V57I 0.27 tolerated(1) benign(0.003) TCGA-XM-A8R8-01 11 16804416 16804416 G A PLEKHA7 3'Flank 0.20 TCGA-XM-A8R8-01 12 123950172 123950172 C T SNRNP35 Missense_Mutation p.R34C 0.17 deleterious(0) probably_damaging(0.967) TCGA-XM-A8R8-01 12 26493126 26493126 C T ITPR2 Missense_Mutation p.G2665S 0.17 tolerated(0.98) benign(0.002) TCGA-XM-A8R8-01 12 45417499 45417499 C A DBX2 Missense_Mutation p.K226N 0.08 deleterious(0) possibly_damaging(0.896) TCGA-XM-A8R8-01 13 25466814 25466814 G A CENPJ Silent p.S1061S 0.10 TCGA-XM-A8R8-01 15 75595139 75595139 C T DNM1P34 RNA 0.50 TCGA-XM-A8R8-01 17 60526594 60526594 A G METTL2A 3'UTR 0.09 TCGA-XM-A8R8-01 19 1796262 1796262 G T ATP8B3 Missense_Mutation p.Q586K 0.17 tolerated(0.15) benign(0.201) TCGA-XM-A8R8-01 20 6749169 6749169 T C BMP2 5'UTR 0.25 TCGA-XM-A8R8-01 22 37705291 37705291 C T CYTH4 Silent p.I245I 0.15 TCGA-XM-A8R8-01 3 186395790 186395790 G A HRG 3'UTR 0.09 TCGA-XM-A8R8-01 3 52256145 52256145 C A TLR9 Missense_Mutation p.E883D 0.16 tolerated(0.18) possibly_damaging(0.547) TCGA-XM-A8R8-01 4 146056332 146056332 A G OTUD4 3'UTR 0.12 TCGA-XM-A8R8-01 4 6612643 6612643 G T MAN2B2 Missense_Mutation p.D766Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-XM-A8R8-01 8 37612325 37612325 C A ERLIN2 3'UTR 0.22 TCGA-XM-A8R9-01 11 18159126 18159126 G A MRGPRX3 Nonsense_Mutation p.W126* 0.07 TCGA-XM-A8R9-01 12 67663432 67663432 C T CAND1 5'UTR 0.29 TCGA-XM-A8R9-01 16 69730965 69730965 A C NFAT5 3'UTR 0.06 TCGA-XM-A8R9-01 19 23405608 23405608 C T ZNF724P Missense_Mutation p.C480Y 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-XM-A8R9-01 19 46282590 46282590 C T DMPK Missense_Mutation p.V132M 0.15 deleterious(0) probably_damaging(1) TCGA-XM-A8R9-01 19 49859215 49859215 C T TEAD2 Splice_Site p.X124_splice 0.07 TCGA-XM-A8R9-01 1 174417673 174417673 G A GPR52 Missense_Mutation p.A142T 0.12 deleterious(0) probably_damaging(0.992) TCGA-XM-A8R9-01 21 39580413 39580413 C A DSCR10 RNA 0.10 TCGA-XM-A8R9-01 21 44450115 44450115 G A PKNOX1 Silent p.E405E 0.12 TCGA-XM-A8R9-01 22 50719926 50719926 C T PLXNB2 Silent p.V1175V 0.12 TCGA-XM-A8R9-01 2 136467740 136467740 A T R3HDM1 Missense_Mutation p.Y857F 0.06 tolerated(0.08) benign(0.11) TCGA-XM-A8R9-01 2 196600091 196600091 G A SLC39A10 3'UTR 0.05 TCGA-XM-A8R9-01 4 76879002 76879002 T C SDAD1 Missense_Mutation p.I526V 0.11 tolerated(0.43) benign(0.001) TCGA-XM-A8R9-01 5 137275246 137275246 T C FAM13B 3'UTR 0.06 TCGA-XM-A8R9-01 5 70782361 70782362 - TTT BDP1 In_Frame_Ins p.V374_L375insF 0.14 TCGA-XM-A8R9-01 5 72348254 72348254 A T FCHO2 Missense_Mutation p.N365Y 0.09 deleterious(0.01) benign(0.14) TCGA-XM-A8R9-01 7 112460528 112460529 - A C7orf60 3'UTR 0.11 TCGA-XM-A8R9-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.04 deleterious(0.05) probably_damaging(0.992) TCGA-XM-A8R9-01 9 86322615 86322615 C T UBQLN1 5'UTR 0.10 TCGA-XM-A8R9-01 X 134481014 134481014 A T ZNF449 5'UTR 0.09 TCGA-XM-A8RB-01 10 97071847 97071848 - A SORBS1 3'UTR 0.11 TCGA-XM-A8RB-01 17 36923640 36923640 T A PIP4K2B 3'UTR 0.16 TCGA-XM-A8RB-01 17 8791872 8791872 C T PIK3R5 Missense_Mutation p.R411H 0.07 tolerated(0.1) benign(0.013) TCGA-XM-A8RB-01 18 14339587 14339587 G A CYP4F35P RNA 0.19 TCGA-XM-A8RB-01 18 14339625 14339625 C T CYP4F35P RNA 0.19 TCGA-XM-A8RB-01 1 27058008 27058008 G A ARID1A Silent p.T572T 0.17 TCGA-XM-A8RB-01 20 30642054 30642054 A C HCK Intron 0.06 TCGA-XM-A8RB-01 4 110971055 110971055 A T ELOVL6 3'UTR 0.06 TCGA-XM-A8RB-01 5 175395081 175395081 C G THOC3 Missense_Mutation p.G44A 0.08 tolerated(0.6) benign(0) TCGA-XM-A8RC-01 10 115609247 115609247 A C DCLRE1A Silent p.P539P 0.10 TCGA-XM-A8RC-01 10 124359583 124359583 C T DMBT1 Missense_Mutation p.S1095F 0.09 tolerated(0.26) unknown(0) TCGA-XM-A8RC-01 11 18451288 18451288 C - LDHC Frame_Shift_Del p.Y83* 0.09 TCGA-XM-A8RC-01 11 5537159 5537159 G A UBQLNL Silent p.C171C 0.21 TCGA-XM-A8RC-01 12 130827627 130827627 A G PIWIL1 Silent p.G57G 0.07 TCGA-XM-A8RC-01 12 48144924 48144924 C T RAPGEF3 Missense_Mutation p.R193K 0.08 tolerated(0.66) benign(0.001) TCGA-XM-A8RC-01 12 70928385 70928385 G A PTPRB Missense_Mutation p.T2084M 0.05 deleterious(0) probably_damaging(0.998) TCGA-XM-A8RC-01 15 55522664 55522664 C A RAB27A Silent p.P58P 0.18 TCGA-XM-A8RC-01 15 78316874 78316874 A C TBC1D2B Missense_Mutation p.V365G 0.14 deleterious(0) possibly_damaging(0.827) TCGA-XM-A8RC-01 15 89055837 89055837 A G DET1 3'UTR 0.09 TCGA-XM-A8RC-01 17 78320135 78320135 C G RNF213 Missense_Mutation p.S2667C 0.09 benign(0.004) TCGA-XM-A8RC-01 18 12308715 12308715 C T TUBB6 Silent p.G29G 0.10 TCGA-XM-A8RC-01 19 19335003 19335003 C T NCAN Missense_Mutation p.R217W 0.11 deleterious(0) probably_damaging(1) TCGA-XM-A8RC-01 19 57327572 57327572 G A PEG3 Silent p.D746D 0.08 TCGA-XM-A8RC-01 1 205180465 205180465 G C DSTYK Missense_Mutation p.L67V 0.09 tolerated_low_confidence(1) benign(0) TCGA-XM-A8RC-01 1 237948028 237948028 A G RYR2 Missense_Mutation p.Q4339R 0.12 probably_damaging(0.983) TCGA-XM-A8RC-01 1 51929355 51929355 A G EPS15 Missense_Mutation p.I164T 0.08 deleterious(0.01) benign(0.018) TCGA-XM-A8RC-01 20 3128199 3128199 A C FASTKD5 Silent p.T506T 0.12 TCGA-XM-A8RC-01 22 26849357 26849357 C T HPS4 Missense_Mutation p.A657T 0.10 deleterious(0) probably_damaging(0.997) TCGA-XM-A8RC-01 2 122520589 122520589 G A TSN Missense_Mutation p.D128N 0.07 tolerated(0.92) benign(0.002) TCGA-XM-A8RC-01 2 202285171 202285171 A G TRAK2 Silent p.N20N 0.14 TCGA-XM-A8RC-01 2 48036361 48036361 T G FBXO11 Missense_Mutation p.S831R 0.06 tolerated(0.25) benign(0) TCGA-XM-A8RC-01 3 187896938 187896938 C - AC022498.1 5'UTR 0.12 TCGA-XM-A8RC-01 3 56657536 56657536 T C FAM208A 3'UTR 0.13 TCGA-XM-A8RC-01 3 99886630 99886630 C T CMSS1 Missense_Mutation p.S155L 0.13 deleterious(0.01) possibly_damaging(0.466) TCGA-XM-A8RC-01 4 156830136 156830136 C T TDO2 Missense_Mutation p.T134M 0.08 deleterious(0) probably_damaging(1) TCGA-XM-A8RC-01 4 185678349 185678349 G A ACSL1 Missense_Mutation p.A676V 0.11 deleterious(0.01) benign(0.008) TCGA-XM-A8RC-01 5 10973003 10973003 C T CTNND2 3'UTR 0.13 TCGA-XM-A8RC-01 6 107955796 107955796 C - SOBP Frame_Shift_Del p.R585Gfs*22 0.11 TCGA-XM-A8RC-01 6 73879514 73879514 G A KCNQ5 Missense_Mutation p.C524Y 0.12 tolerated(0.34) benign(0.055) TCGA-XM-A8RC-01 7 128478691 128478691 G A FLNC Silent p.V415V 0.14 TCGA-XM-A8RC-01 8 71068207 71068207 T G NCOA2 Missense_Mutation p.Q798P 0.17 deleterious(0) benign(0.092) TCGA-XM-A8RC-01 9 130494842 130494842 C T TOR2A Splice_Site p.X241_splice 0.04 TCGA-XM-A8RC-01 9 21141846 21141846 A G IFNW1 5'UTR 0.08 TCGA-XM-A8RC-01 X 24230881 24230881 C G ZFX 3'UTR 0.11 TCGA-XM-A8RC-01 X 35959479 35959479 A G CXorf22 Missense_Mutation p.K161E 0.08 deleterious(0.03) possibly_damaging(0.592) TCGA-XM-A8RC-01 X 39933500 39933500 A T BCOR Missense_Mutation p.S367T 0.12 deleterious(0.02) possibly_damaging(0.628) TCGA-XM-A8RD-01 10 28229538 28229538 T G ARMC4 Missense_Mutation p.N647T 0.19 deleterious(0.02) possibly_damaging(0.555) TCGA-XM-A8RD-01 11 67024115 67024115 G A KDM2A 3'UTR 0.07 TCGA-XM-A8RD-01 12 55615104 55615104 C A OR10A7 Missense_Mutation p.T99N 0.10 deleterious(0) possibly_damaging(0.46) TCGA-XM-A8RD-01 16 28922220 28922220 G A RABEP2 Nonsense_Mutation p.Q360* 0.06 TCGA-XM-A8RD-01 16 29848216 29848216 C T MVP Silent p.C282C 0.07 TCGA-XM-A8RD-01 17 57350172 57350172 A G GDPD1 Missense_Mutation p.D266G 0.05 tolerated(0.12) benign(0.155) TCGA-XM-A8RD-01 19 56001715 56001715 C G SSC5D Missense_Mutation p.R176G 0.09 benign(0.008) TCGA-XM-A8RD-01 19 5667355 5667355 A G SAFB Intron 0.13 TCGA-XM-A8RD-01 19 58880582 58880582 C T ZNF837 Missense_Mutation p.A40T 0.24 tolerated(0.14) benign(0.011) TCGA-XM-A8RD-01 1 108677798 108677798 C A SLC25A24 3'UTR 0.06 TCGA-XM-A8RD-01 1 205126509 205126509 C - DSTYK Frame_Shift_Del p.L749* 0.10 TCGA-XM-A8RD-01 1 46827447 46827447 G A NSUN4 Missense_Mutation p.E362K 0.08 deleterious(0) benign(0.275) TCGA-XM-A8RD-01 20 2517946 2517946 C T TMC2 Silent p.S22S 0.14 TCGA-XM-A8RD-01 20 49369544 49369544 C A PARD6B 3'UTR 0.07 TCGA-XM-A8RE-01 10 106976753 106976753 C T SORCS3 Silent p.Y869Y 0.07 TCGA-XM-A8RE-01 10 5499691 5499691 G A NET1 3'UTR 0.05 TCGA-XM-A8RE-01 11 119206980 119206980 G A RNF26 Missense_Mutation p.C383Y 0.14 deleterious(0) probably_damaging(1) TCGA-XM-A8RE-01 11 71202894 71202894 C T NADSYN1 Missense_Mutation p.P570L 0.29 tolerated(0.09) benign(0.365) TCGA-XM-A8RE-01 12 120662114 120662114 T C PXN Missense_Mutation p.E27G 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.894) TCGA-XM-A8RE-01 13 39613708 39613708 A T NHLRC3 Missense_Mutation p.D82V 0.06 deleterious(0.03) benign(0.016) TCGA-XM-A8RE-01 14 45398018 45398018 C T KLHL28 3'UTR 0.08 TCGA-XM-A8RE-01 17 19316919 19316919 T A RNF112 Missense_Mutation p.D250E 0.13 deleterious(0.03) possibly_damaging(0.846) TCGA-XM-A8RE-01 18 909900 909900 T A ADCYAP1 3'UTR 0.14 TCGA-XM-A8RE-01 19 36109804 36109804 G - HAUS5 Frame_Shift_Del p.L346Ffs*31 0.10 TCGA-XM-A8RE-01 1 205627169 205627169 C T SLC45A3 3'UTR 0.06 TCGA-XM-A8RE-01 1 26663418 26663418 G A AIM1L Silent p.H401H 0.08 TCGA-XM-A8RE-01 20 210474 210474 A G DEFB129 3'UTR 0.05 TCGA-XM-A8RE-01 3 138121503 138121503 C - MRAS 3'UTR 0.08 TCGA-XM-A8RF-01 10 31138511 31138511 T C ZNF438 Missense_Mutation p.T275A 0.34 tolerated(1) benign(0) TCGA-XM-A8RF-01 10 75560885 75560885 G A ZSWIM8 Missense_Mutation p.A1753T 0.21 tolerated(0.05) benign(0.008) TCGA-XM-A8RF-01 10 98173000 98173000 G A TLL2 Missense_Mutation p.R333W 0.09 deleterious(0) probably_damaging(0.931) TCGA-XM-A8RF-01 11 27681170 27681171 - TC BDNF Intron 0.11 TCGA-XM-A8RF-01 11 68700908 68700908 G T IGHMBP2 Silent p.G459G 0.24 TCGA-XM-A8RF-01 11 88781124 88781124 C T GRM5 5'UTR 0.18 TCGA-XM-A8RF-01 12 27835371 27835371 C T PPFIBP1 Nonsense_Mutation p.Q706* 0.39 TCGA-XM-A8RF-01 12 48383028 48383028 C A COL2A1 Missense_Mutation p.G369C 0.15 unknown(0) TCGA-XM-A8RF-01 12 57389250 57389250 G T GPR182 Missense_Mutation p.G86V 0.16 deleterious(0.01) possibly_damaging(0.742) TCGA-XM-A8RF-01 14 23816667 23816667 A C SLC22A17 Splice_Site p.X406_splice 0.35 TCGA-XM-A8RF-01 14 74759934 74759935 - GC ABCD4 Frame_Shift_Ins p.H246Rfs*3 0.30 TCGA-XM-A8RF-01 15 66727443 66727443 T G MAP2K1 Missense_Mutation p.F53L 0.63 deleterious(0.03) possibly_damaging(0.852) TCGA-XM-A8RF-01 16 2577812 2577812 C T AMDHD2 Missense_Mutation p.R152W 0.82 deleterious(0) probably_damaging(0.975) TCGA-XM-A8RF-01 16 67575618 67575618 C T FAM65A Missense_Mutation p.T358I 0.36 deleterious(0.01) possibly_damaging(0.885) TCGA-XM-A8RF-01 17 38927440 38927440 T C KRT26 Missense_Mutation p.N164D 0.38 deleterious(0) probably_damaging(0.943) TCGA-XM-A8RF-01 17 72342654 72342654 G T KIF19 Silent p.R305R 0.18 TCGA-XM-A8RF-01 17 78411125 78411125 C T ENDOV 3'UTR 0.36 TCGA-XM-A8RF-01 19 14141521 14141521 G A RLN3 Splice_Site p.X64_splice 0.30 TCGA-XM-A8RF-01 19 44085496 44085496 G C PINLYP Missense_Mutation p.C19S 0.32 deleterious(0) probably_damaging(0.998) TCGA-XM-A8RF-01 19 54659194 54659194 C T LENG1 3'UTR 0.46 TCGA-XM-A8RF-01 19 55378294 55378294 C T KIR3DL2 3'UTR 0.14 TCGA-XM-A8RF-01 1 179528897 179528897 C A NPHS2 Splice_Site p.X151_splice 0.24 TCGA-XM-A8RF-01 1 19027246 19027246 G A PAX7 Missense_Mutation p.G296S 0.33 tolerated(0.13) benign(0.059) TCGA-XM-A8RF-01 1 19470510 19470510 T C UBR4 Missense_Mutation p.T2715A 0.31 possibly_damaging(0.637) TCGA-XM-A8RF-01 1 211922025 211922025 A - LPGAT1 3'UTR 0.16 TCGA-XM-A8RF-01 1 237777980 237777980 T A RYR2 Missense_Mutation p.F1851Y 0.56 probably_damaging(0.997) TCGA-XM-A8RF-01 1 43738966 43738966 C T TMEM125 Silent p.G191G 0.20 TCGA-XM-A8RF-01 1 65693159 65693159 A G AK4 3'UTR 0.03 TCGA-XM-A8RF-01 20 30753686 30753686 C T TM9SF4 3'UTR 0.06 TCGA-XM-A8RF-01 21 16334365 16334365 A T NRIP1 3'UTR 0.19 TCGA-XM-A8RF-01 21 43531324 43531324 A C UMODL1 Missense_Mutation p.R664S 0.15 tolerated(0.77) benign(0.402) TCGA-XM-A8RF-01 2 207459556 207459556 G A ADAM23 Missense_Mutation p.C725Y 0.41 deleterious(0) probably_damaging(1) TCGA-XM-A8RF-01 3 4358878 4358878 T G SETMAR Missense_Mutation p.L668R 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-XM-A8RF-01 3 9691294 9691294 C T MTMR14 Silent p.A9A 0.06 TCGA-XM-A8RF-01 4 164058368 164058368 G A NAF1 Nonsense_Mutation p.Q305* 0.05 TCGA-XM-A8RF-01 4 77100714 77100714 C A SCARB2 Missense_Mutation p.V190F 0.35 tolerated(0.46) benign(0.195) TCGA-XM-A8RF-01 5 177059218 177059218 G A RP11-1277A3.2 Intron 0.20 TCGA-XM-A8RF-01 5 68665316 68665316 A C TAF9 Intron 0.29 TCGA-XM-A8RF-01 6 27100350 27100350 C T HIST1H2BJ Missense_Mutation p.M60I 0.06 deleterious_low_confidence(0.02) benign(0.135) TCGA-XM-A8RF-01 6 38976666 38976666 G A DNAH8 Missense_Mutation p.G4214R 0.05 probably_damaging(1) TCGA-XM-A8RF-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.26 deleterious(0.05) probably_damaging(0.992) TCGA-XM-A8RF-01 8 136554927 136554927 C T KHDRBS3 Missense_Mutation p.R80C 0.41 deleterious(0) probably_damaging(0.965) TCGA-XM-A8RF-01 9 129815132 129815132 C T RALGPS1 Silent p.L133L 0.40 TCGA-XM-A8RF-01 9 130552366 130552366 A T CDK9 3'UTR 0.29 TCGA-XM-A8RF-01 9 140175055 140175055 C G TOR4A 3'UTR 0.47 TCGA-XM-A8RF-01 9 140175210 140175210 C G TOR4A 3'UTR 0.26 TCGA-XM-A8RF-01 X 151909372 151909372 C A CSAG1 3'UTR 0.37 TCGA-XM-A8RF-01 X 16711302 16711302 C T CTPS2 Missense_Mutation p.V201I 0.20 tolerated(0.36) possibly_damaging(0.548) TCGA-XM-A8RF-01 X 32482815 32482815 T G DMD Missense_Mutation p.N1055T 0.43 probably_damaging(0.946) TCGA-XM-A8RF-01 X 49106160 49106160 C T CCDC22 Missense_Mutation p.R582W 0.40 deleterious(0.04) possibly_damaging(0.545) TCGA-XM-A8RF-01 X 51150909 51150909 C T CXorf67 Silent p.S347S 0.08 TCGA-XM-A8RF-01 X 71522667 71522667 G A CITED1 Missense_Mutation p.A44V 0.33 tolerated_low_confidence(0.76) benign(0.002) TCGA-XM-A8RG-01 10 121580376 121580376 C A INPP5F Missense_Mutation p.H635Q 0.06 tolerated(0.25) possibly_damaging(0.653) TCGA-XM-A8RG-01 11 111164668 111164668 T C COLCA1 3'UTR 0.54 TCGA-XM-A8RG-01 11 111179016 111179016 G A COLCA2 Missense_Mutation p.A107T 0.41 tolerated(0.75) benign(0.049) TCGA-XM-A8RG-01 11 2443403 2443403 C T TRPM5 Missense_Mutation p.R89H 0.41 deleterious(0) probably_damaging(0.941) TCGA-XM-A8RG-01 11 533877 533877 C A HRAS Missense_Mutation p.G60V 0.57 deleterious(0) probably_damaging(1) TCGA-XM-A8RG-01 13 26789705 26789705 G A RNF6 Missense_Mutation p.S105L 0.36 tolerated(0.08) possibly_damaging(0.503) TCGA-XM-A8RG-01 14 100792558 100792558 G A SLC25A47 Missense_Mutation p.R46Q 0.22 tolerated(0.4) benign(0.009) TCGA-XM-A8RG-01 15 65622917 65622917 G T IGDCC3 Missense_Mutation p.T575N 0.18 tolerated(0.89) benign(0.02) TCGA-XM-A8RG-01 15 74967474 74967474 C A EDC3 5'UTR 0.33 TCGA-XM-A8RG-01 15 83686290 83686290 T C BTBD1 3'UTR 0.42 TCGA-XM-A8RG-01 16 784523 784523 C T NARFL Intron 0.50 TCGA-XM-A8RG-01 16 87723875 87723875 C T JPH3 Missense_Mutation p.R637W 0.45 deleterious(0) benign(0.425) TCGA-XM-A8RG-01 17 38345579 38345579 G A RAPGEFL1 Missense_Mutation p.A150T 0.14 tolerated_low_confidence(0.28) benign(0.016) TCGA-XM-A8RG-01 17 43190522 43190522 G A PLCD3 Missense_Mutation p.A699V 0.09 deleterious(0.01) benign(0.419) TCGA-XM-A8RG-01 17 71257869 71257869 A G CPSF4L Missense_Mutation p.F30S 0.13 deleterious(0) probably_damaging(0.976) TCGA-XM-A8RG-01 19 52716021 52716021 C G PPP2R1A Missense_Mutation p.L196V 0.55 tolerated(0.71) benign(0.035) TCGA-XM-A8RG-01 19 991253 991253 C G WDR18 Missense_Mutation p.S278C 0.45 deleterious(0) probably_damaging(0.994) TCGA-XM-A8RG-01 1 203277995 203277998 CCTT - BTG2 3'UTR 0.35 TCGA-XM-A8RG-01 1 41503205 41503205 A G SCMH1 Missense_Mutation p.F493L 0.05 tolerated(0.74) benign(0.15) TCGA-XM-A8RG-01 2 179584492 179584492 C A TTN Missense_Mutation p.E7909D 0.62 TCGA-XM-A8RG-01 2 60684822 60684822 C T BCL11A 3'UTR 0.33 TCGA-XM-A8RG-01 3 38622694 38622694 G A SCN5A Missense_Mutation p.R986W 0.57 tolerated(0.15) possibly_damaging(0.655) TCGA-XM-A8RG-01 3 49400049 49400049 T G RHOA Silent p.P96P 0.44 TCGA-XM-A8RG-01 5 179728342 179728348 TAAACAA - GFPT2 3'UTR 0.31 TCGA-XM-A8RG-01 6 117674228 117674228 C A ROS1 Missense_Mutation p.A1416S 0.06 tolerated(0.73) benign(0.05) TCGA-XM-A8RG-01 6 26250543 26250543 G A HIST1H3F Silent p.C97C 0.48 TCGA-XM-A8RG-01 6 32185850 32185850 C G NOTCH4 Missense_Mutation p.E516Q 0.30 deleterious(0) possibly_damaging(0.903) TCGA-XM-A8RG-01 7 26678937 26678937 G T C7orf71 Missense_Mutation p.L58F 0.17 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-XM-A8RG-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.38 deleterious(0.05) probably_damaging(0.992) TCGA-XM-A8RG-01 8 125107171 125107171 C A FER1L6 Silent p.L1529L 0.48 TCGA-XM-A8RG-01 8 24774812 24774812 G T NEFM Missense_Mutation p.V482F 0.38 deleterious(0.04) unknown(0) TCGA-XM-A8RG-01 9 21331505 21331505 A G KLHL9 3'UTR 0.27 TCGA-XM-A8RG-01 9 91606794 91606794 T - C9orf47 Frame_Shift_Del p.F168Sfs*13 0.10 TCGA-XM-A8RG-01 X 118894154 118894154 C A SOWAHD 3'UTR 0.07 TCGA-XM-A8RH-01 10 134169314 134169314 A G LRRC27 Missense_Mutation p.E365G 0.14 tolerated(0.05) benign(0.037) TCGA-XM-A8RH-01 14 73733504 73733504 G A PAPLN Silent p.V1128V 0.06 TCGA-XM-A8RH-01 16 81078739 81078739 G A ATMIN 3'UTR 0.04 TCGA-XM-A8RH-01 19 16466506 16466506 C T EPS15L1 3'UTR 0.08 TCGA-XM-A8RH-01 19 36275117 36275117 T C ARHGAP33 Missense_Mutation p.F489L 0.06 tolerated_low_confidence(0.25) benign(0.294) TCGA-XM-A8RH-01 19 5144342 5144342 C T KDM4B Silent p.I940I 0.13 TCGA-XM-A8RH-01 20 5528043 5528043 T C GPCPD1 3'UTR 0.07 TCGA-XM-A8RH-01 3 121208648 121208648 G A POLQ Missense_Mutation p.R1044C 0.06 tolerated_low_confidence(0.11) benign(0.001) TCGA-XM-A8RH-01 4 75974155 75974156 AC - PARM1 3'UTR 0.17 TCGA-XM-A8RH-01 5 179731776 179731776 C T GFPT2 Missense_Mutation p.R613H 0.09 deleterious(0.01) possibly_damaging(0.727) TCGA-XM-A8RH-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.04 deleterious(0.05) probably_damaging(0.992) TCGA-XM-A8RI-01 10 32329384 32329384 A T KIF5B Missense_Mutation p.D72E 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-XM-A8RI-01 11 110150413 110150413 G A RDX Missense_Mutation p.P2L 0.06 deleterious(0) benign(0.056) TCGA-XM-A8RI-01 11 125514478 125514478 A G CHEK1 Silent p.Q391Q 0.10 TCGA-XM-A8RI-01 11 130784293 130784293 G A SNX19 Silent p.A514A 0.26 TCGA-XM-A8RI-01 11 89531434 89531434 C T TRIM49 Missense_Mutation p.R408Q 0.05 tolerated(0.31) benign(0.126) TCGA-XM-A8RI-01 12 104381509 104381509 A G TDG 3'UTR 0.11 TCGA-XM-A8RI-01 13 112722167 112722167 G A SOX1 Silent p.Q65Q 0.12 TCGA-XM-A8RI-01 17 15878863 15878863 C T ADORA2B 3'UTR 0.07 TCGA-XM-A8RI-01 17 61950575 61950575 G A CSH2 Silent p.R45R 0.06 TCGA-XM-A8RI-01 19 51960916 51960916 G A SIGLEC8 Missense_Mutation p.P178S 0.12 tolerated(0.06) possibly_damaging(0.727) TCGA-XM-A8RI-01 19 54697124 54697124 T C TSEN34 Silent p.L280L 0.09 TCGA-XM-A8RI-01 19 7742553 7742553 C G C19orf59 Missense_Mutation p.T42S 0.13 tolerated(0.07) benign(0.248) TCGA-XM-A8RI-01 1 202931736 202931736 C T CYB5R1 Silent p.G279G 0.12 TCGA-XM-A8RI-01 1 2335046 2335046 G C RER1 3'UTR 0.12 TCGA-XM-A8RI-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.08 deleterious(0) probably_damaging(0.96) TCGA-XM-A8RI-01 2 219855055 219855055 G A CRYBA2 Silent p.S171S 0.08 TCGA-XM-A8RI-01 4 109767374 109767374 C G COL25A1 Missense_Mutation p.G479A 0.08 deleterious(0) probably_damaging(1) TCGA-XM-A8RI-01 4 146056332 146056332 A G OTUD4 3'UTR 0.12 TCGA-XM-A8RI-01 5 143228 143228 G A PLEKHG4B Missense_Mutation p.G159E 0.14 tolerated(1) benign(0.065) TCGA-XM-A8RI-01 6 158487835 158487835 A G SYNJ2 Intron 0.08 TCGA-XM-A8RI-01 6 1610881 1610881 C A FOXC1 Nonsense_Mutation p.Y67* 0.15 TCGA-XM-A8RI-01 6 28542861 28542861 C T SCAND3 Missense_Mutation p.V541I 0.12 tolerated_low_confidence(0.45) benign(0) TCGA-XM-A8RI-01 7 105752711 105752711 C A SYPL1 Intron 0.09 TCGA-XM-A8RI-01 7 117876130 117876130 C T ANKRD7 Silent p.N168N 0.04 TCGA-XM-A8RI-01 7 143657480 143657480 G A OR2F1 Silent p.G139G 0.09 TCGA-XM-A8RI-01 7 99459367 99459367 G A CYP3A43 Silent p.V386V 0.09 TCGA-XM-A8RI-01 9 66457323 66457323 C G RP11-262H14.1 RNA 0.19 TCGA-XM-A8RI-01 X 39932171 39932171 G A BCOR Nonsense_Mutation p.R810* 0.38 TCGA-XM-A8RI-01 X 5821678 5821678 G T NLGN4X Missense_Mutation p.D347E 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-XM-A8RL-01 12 108052128 108052128 A T BTBD11 3'UTR 0.09 TCGA-XM-A8RL-01 12 49726452 49726452 C A C1QL4 3'UTR 0.19 TCGA-XM-A8RL-01 19 9089903 9089903 C T MUC16 Missense_Mutation p.A638T 0.07 unknown(0) TCGA-XM-A8RL-01 1 240256111 240256111 G A FMN2 Silent p.A234A 0.14 TCGA-XM-A8RL-01 3 50306751 50306751 A G SEMA3B-AS1 5'Flank 0.19 TCGA-XM-A8RL-01 4 140587129 140587129 G A MGST2 5'UTR 0.17 TCGA-XM-A8RL-01 X 129318327 129318327 C T RAB33A Silent p.N109N 0.08 TCGA-XM-AAZ1-01 16 1020868 1020868 G T LMF1 Missense_Mutation p.A38E 0.22 tolerated(0.28) benign(0.007) TCGA-XM-AAZ1-01 17 36491566 36491566 G T GPR179 Missense_Mutation p.F438L 0.16 tolerated(0.06) benign(0.168) TCGA-XM-AAZ1-01 17 43345019 43345019 A G MAP3K14-AS1 RNA 0.04 TCGA-XM-AAZ1-01 17 4448966 4448966 C T MYBBP1A Missense_Mutation p.R671Q 0.05 deleterious(0.03) probably_damaging(0.989) TCGA-XM-AAZ1-01 18 50961540 50961540 C T DCC Missense_Mutation p.P1064S 0.08 tolerated(0.09) benign(0.011) TCGA-XM-AAZ1-01 19 51960729 51960729 C T SIGLEC8 Missense_Mutation p.R240H 0.11 tolerated(0.55) benign(0.002) TCGA-XM-AAZ1-01 1 115258734 115258734 T G NRAS Missense_Mutation p.K16N 0.09 deleterious(0) possibly_damaging(0.519) TCGA-XM-AAZ1-01 1 32670768 32670768 A G CCDC28B Intron 0.15 TCGA-XM-AAZ1-01 1 39879250 39879250 A G KIAA0754 Missense_Mutation p.T969A 0.29 benign(0.018) TCGA-XM-AAZ1-01 2 55515030 55515030 G A CCDC88A 3'UTR 0.12 TCGA-XM-AAZ1-01 3 185866797 185866797 G A DGKG 3'UTR 0.10 TCGA-XM-AAZ1-01 4 109971310 109971310 T C COL25A1 Silent p.R131R 0.04 TCGA-XM-AAZ1-01 5 73128177 73128177 A G ARHGEF28 Missense_Mutation p.I347V 0.07 tolerated(1) benign(0) TCGA-XM-AAZ1-01 5 75621412 75621412 C T SV2C 3'UTR 0.15 TCGA-XM-AAZ1-01 5 86659234 86659234 A T RASA1 Missense_Mutation p.E508V 0.07 deleterious(0) probably_damaging(0.991) TCGA-XM-AAZ1-01 6 127608562 127608562 A T RNF146 Missense_Mutation p.E268D 0.15 tolerated(0.33) benign(0.092) TCGA-XM-AAZ1-01 6 44200586 44200586 C G SLC29A1 Missense_Mutation p.R368G 0.14 deleterious(0) probably_damaging(0.997) TCGA-XM-AAZ1-01 8 119938903 119938903 G A TNFRSF11B Missense_Mutation p.T216M 0.11 deleterious(0.01) possibly_damaging(0.546) TCGA-XM-AAZ1-01 8 144894505 144894505 G A SCRIB Silent p.C279C 0.10 TCGA-XM-AAZ1-01 X 20159748 20159748 T C EIF1AX Missense_Mutation p.N4S 0.14 tolerated(0.07) unknown(0) TCGA-XM-AAZ2-01 10 12211342 12211342 G A SEC61A2 3'Flank 0.29 TCGA-XM-AAZ2-01 11 3682627 3682627 C T ART1 Silent p.C290C 0.12 TCGA-XM-AAZ2-01 11 56230566 56230566 G A OR5M9 Silent p.A104A 0.38 TCGA-XM-AAZ2-01 11 63668338 63668338 C A MARK2 Missense_Mutation p.D325E 0.08 deleterious(0.01) possibly_damaging(0.85) TCGA-XM-AAZ2-01 11 85373384 85373384 A G CREBZF 3'UTR 0.39 TCGA-XM-AAZ2-01 11 88027335 88027335 C T CTSC Missense_Mutation p.G411S 0.42 deleterious(0) probably_damaging(0.995) TCGA-XM-AAZ2-01 13 110822103 110822103 G A COL4A1 Missense_Mutation p.P1250L 0.12 possibly_damaging(0.842) TCGA-XM-AAZ2-01 14 59835782 59835782 G A DAAM1 3'UTR 0.53 TCGA-XM-AAZ2-01 15 28090105 28090105 C A OCA2 Missense_Mutation p.R811M 0.09 deleterious(0) probably_damaging(0.995) TCGA-XM-AAZ2-01 15 57754037 57754037 C G CGNL1 Missense_Mutation p.Q784E 0.10 tolerated(0.11) benign(0.326) TCGA-XM-AAZ2-01 17 1478274 1478274 C T SLC43A2 3'UTR 0.09 TCGA-XM-AAZ2-01 19 49477938 49477938 T C GYS1 Missense_Mutation p.D454G 0.21 deleterious(0) probably_damaging(0.997) TCGA-XM-AAZ2-01 1 111991350 111991350 G A WDR77 Silent p.P64P 0.38 TCGA-XM-AAZ2-01 1 16889999 16889999 C A NBPF1 3'UTR 0.19 TCGA-XM-AAZ2-01 1 20640980 20640980 C T VWA5B1 Missense_Mutation p.T153M 0.39 deleterious(0) probably_damaging(0.978) TCGA-XM-AAZ2-01 20 2841901 2841901 C T VPS16 Missense_Mutation p.R262W 0.07 deleterious(0.01) probably_damaging(0.91) TCGA-XM-AAZ2-01 22 50721178 50721178 G C PLXNB2 Silent p.P983P 0.37 TCGA-XM-AAZ2-01 2 122165068 122165068 A G CLASP1 Missense_Mutation p.L883P 0.36 deleterious(0) probably_damaging(0.987) TCGA-XM-AAZ2-01 3 119534625 119534625 C T NR1I2 Silent p.F408F 0.33 TCGA-XM-AAZ2-01 3 179519473 179519473 A C PEX5L 3'UTR 0.38 TCGA-XM-AAZ2-01 4 175897904 175897904 G T ADAM29 Nonsense_Mutation p.E410* 0.53 TCGA-XM-AAZ2-01 5 112384918 112384918 G A MCC Missense_Mutation p.R843W 0.18 tolerated(0.07) probably_damaging(0.995) TCGA-XM-AAZ2-01 6 155153402 155153402 C G SCAF8 Missense_Mutation p.L897V 0.43 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-XM-AAZ2-01 6 19838206 19838206 G A ID4 Missense_Mutation p.R74H 0.11 deleterious(0) probably_damaging(0.947) TCGA-XM-AAZ2-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.36 deleterious(0.05) probably_damaging(0.992) TCGA-XM-AAZ2-01 8 11703292 11703292 T C CTSB Missense_Mutation p.Y267C 0.18 deleterious(0) probably_damaging(1) TCGA-XM-AAZ2-01 X 109695081 109695081 C T RGAG1 Silent p.S412S 0.29 TCGA-XM-AAZ2-01 X 15790686 15790686 C G CA5B Missense_Mutation p.I136M 0.78 tolerated(0.11) probably_damaging(0.973) TCGA-XM-AAZ3-01 11 119210522 119210522 C T C1QTNF5 Missense_Mutation p.G84E 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-XM-AAZ3-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.53 deleterious(0) probably_damaging(0.992) TCGA-XM-AAZ3-01 11 6233063 6233063 G A FAM160A2 Silent p.L878L 0.55 TCGA-XM-AAZ3-01 11 78600855 78600856 - A TENM4 Frame_Shift_Ins p.V354Gfs*28 0.25 TCGA-XM-AAZ3-01 12 392714 392715 - T KDM5A 3'UTR 0.09 TCGA-XM-AAZ3-01 14 22251223 22251223 G A TRAV7 Missense_Mutation p.R5Q 0.45 tolerated(0.12) benign(0.011) TCGA-XM-AAZ3-01 16 1250488 1250488 G A CACNA1H Missense_Mutation p.V346M 0.46 tolerated(0.1) probably_damaging(0.997) TCGA-XM-AAZ3-01 16 21065834 21065834 C T DNAH3 Missense_Mutation p.D1316N 0.34 tolerated(0.54) benign(0.001) TCGA-XM-AAZ3-01 17 3651341 3651341 C T ITGAE Missense_Mutation p.R677Q 0.54 tolerated(0.12) benign(0.131) TCGA-XM-AAZ3-01 17 61949733 61949733 C T CSH2 Intron 0.40 TCGA-XM-AAZ3-01 17 62855863 62855863 C T LRRC37A3 Silent p.S1467S 0.50 TCGA-XM-AAZ3-01 19 44833499 44833499 G T ZNF112 Missense_Mutation p.Q277K 0.24 tolerated(0.08) possibly_damaging(0.856) TCGA-XM-AAZ3-01 1 110453379 110453379 A G CSF1 5'UTR 0.05 TCGA-XM-AAZ3-01 1 153660679 153660679 C T NPR1 Missense_Mutation p.T800M 0.08 tolerated(0.35) benign(0.005) TCGA-XM-AAZ3-01 1 168195362 168195398 CCGGAGCGGCCTGTCCGAGGTGAGTGAGCCCGGGGCC GCGGA SFT2D2 Splice_Site p.X15_splice 0.18 TCGA-XM-AAZ3-01 1 178421661 178421661 G A RASAL2 Missense_Mutation p.R628H 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-XM-AAZ3-01 1 27878653 27878653 G A AHDC1 5'UTR 0.43 TCGA-XM-AAZ3-01 1 99772387 99772387 G A LPPR4 Missense_Mutation p.V705I 0.41 tolerated(0.06) probably_damaging(0.945) TCGA-XM-AAZ3-01 21 44834518 44834518 A C SIK1 3'UTR 0.07 TCGA-XM-AAZ3-01 2 162849691 162849691 T C DPP4 3'UTR 0.50 TCGA-XM-AAZ3-01 2 162849692 162849692 G C DPP4 3'UTR 0.48 TCGA-XM-AAZ3-01 2 33952253 33952253 G A AC009499.1 Intron 0.46 TCGA-XM-AAZ3-01 3 113658830 113658830 G T GRAMD1C Nonsense_Mutation p.E597* 0.45 TCGA-XM-AAZ3-01 3 133307959 133307959 C T CDV3 3'UTR 0.38 TCGA-XM-AAZ3-01 3 183560151 183560151 C A PARL Missense_Mutation p.S231I 0.15 deleterious(0.02) probably_damaging(0.916) TCGA-XM-AAZ3-01 3 44763964 44763964 A G ZNF502 3'UTR 0.39 TCGA-XM-AAZ3-01 3 52728247 52728247 A G GNL3 Missense_Mutation p.I536V 0.38 tolerated(0.41) benign(0.005) TCGA-XM-AAZ3-01 4 149075761 149075761 A C NR3C2 Missense_Mutation p.L769R 0.46 deleterious(0) probably_damaging(0.937) TCGA-XM-AAZ3-01 6 25280024 25280024 A G LRRC16A Translation_Start_Site p.M1? 0.40 deleterious(0) probably_damaging(0.983) TCGA-XM-AAZ3-01 7 149318642 149318642 C T ZNF767 RNA 0.58 TCGA-XM-AAZ3-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.45 deleterious(0.05) probably_damaging(0.992) TCGA-XM-AAZ3-01 8 56270428 56270428 G C XKR4 Missense_Mutation p.A333P 0.41 tolerated(0.42) possibly_damaging(0.834) TCGA-XM-AAZ3-01 9 116171911 116171911 G A POLE3 Missense_Mutation p.P84S 0.45 tolerated(0.09) benign(0.353) TCGA-XM-AAZ3-01 9 131369929 131369929 G A SPTAN1 Missense_Mutation p.D1365N 0.34 tolerated(0.17) possibly_damaging(0.729) TCGA-XM-AAZ3-01 9 33111274 33111274 A C B4GALT1 3'UTR 0.36 TCGA-XU-A92O-01 10 119806528 119806528 G A RAB11FIP2 5'Flank 0.15 TCGA-XU-A92O-01 10 95429586 95429586 T C FRA10AC1 Silent p.L315L 0.26 TCGA-XU-A92O-01 11 126316678 126316678 G T KIRREL3 Silent p.V367V 0.31 TCGA-XU-A92O-01 11 47435002 47435002 T C SLC39A13 Missense_Mutation p.C197R 0.34 tolerated(0.3) benign(0.005) TCGA-XU-A92O-01 11 489643 489643 C T PTDSS2 Missense_Mutation p.P342L 0.39 deleterious(0) probably_damaging(0.986) TCGA-XU-A92O-01 12 122861982 122861982 G A CLIP1 Missense_Mutation p.S204L 0.28 deleterious(0) probably_damaging(0.979) TCGA-XU-A92O-01 12 64858242 64858242 G A TBK1 Silent p.V119V 0.30 TCGA-XU-A92O-01 14 94707027 94707027 A G PPP4R4 Missense_Mutation p.I291V 0.30 tolerated(0.52) benign(0.006) TCGA-XU-A92O-01 16 84438800 84438800 G T ATP2C2 Nonsense_Mutation p.E93* 0.20 TCGA-XU-A92O-01 17 41719387 41719387 A G MEOX1 Missense_Mutation p.F219S 0.08 deleterious(0) probably_damaging(1) TCGA-XU-A92O-01 17 71394219 71394219 C T SDK2 Silent p.V1103V 0.27 TCGA-XU-A92O-01 17 73774042 73774042 A C H3F3B 3'UTR 0.27 TCGA-XU-A92O-01 18 14106162 14106162 T C ZNF519 Missense_Mutation p.K126R 0.33 tolerated(0.26) benign(0.402) TCGA-XU-A92O-01 19 17295734 17295734 A G MYO9B Missense_Mutation p.T812A 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-XU-A92O-01 19 2250393 2250393 G A AMH Missense_Mutation p.G157D 0.28 deleterious(0.03) benign(0.001) TCGA-XU-A92O-01 19 38987072 38987072 G C RYR1 Silent p.V2229V 0.28 TCGA-XU-A92O-01 19 42231212 42231212 G A CEACAM5 Silent p.V695V 0.09 TCGA-XU-A92O-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.33 deleterious(0.01) benign(0.045) TCGA-XU-A92O-01 1 144852464 144852464 G A PDE4DIP Intron 0.17 TCGA-XU-A92O-01 1 158641928 158641928 C T SPTA1 Missense_Mutation p.R470H 0.35 tolerated(0.59) benign(0.001) TCGA-XU-A92O-01 1 160769604 160769604 C T LY9 Silent p.S62S 0.35 TCGA-XU-A92O-01 1 247978147 247978147 C A OR14A16 Missense_Mutation p.K295N 0.40 deleterious(0.01) benign(0.38) TCGA-XU-A92O-01 1 45268519 45268519 C T PLK3 Silent p.G247G 0.05 TCGA-XU-A92O-01 20 17599282 17599282 C T RRBP1 Missense_Mutation p.A807T 0.24 tolerated(0.19) possibly_damaging(0.695) TCGA-XU-A92O-01 21 10910352 10910352 G A TPTE Silent p.D468D 0.18 TCGA-XU-A92O-01 2 131976311 131976311 C T POTEE Silent p.S112S 0.08 TCGA-XU-A92O-01 2 236403402 236403402 C T AGAP1 Silent p.H24H 0.25 TCGA-XU-A92O-01 2 47129054 47129054 T C MCFD2 3'UTR 0.27 TCGA-XU-A92O-01 2 73680585 73680585 G A ALMS1 Missense_Mutation p.V2310I 0.33 benign(0.028) TCGA-XU-A92O-01 3 167045798 167045798 A G ZBBX Missense_Mutation p.V265A 0.22 tolerated(1) benign(0.012) TCGA-XU-A92O-01 4 96035936 96035936 G T BMPR1B Missense_Mutation p.G100V 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-XU-A92O-01 5 11111062 11111062 C A CTNND2 Missense_Mutation p.D791Y 0.32 deleterious(0) probably_damaging(0.958) TCGA-XU-A92O-01 5 14389437 14389437 C A TRIO Missense_Mutation p.P1330T 0.28 probably_damaging(0.999) TCGA-XU-A92O-01 5 177023096 177023097 - T TMED9 3'UTR 0.14 TCGA-XU-A92O-01 6 10764372 10764373 - T MAK 3'UTR 0.10 TCGA-XU-A92O-01 6 32943248 32943248 T A BRD2 Missense_Mutation p.C141S 0.27 deleterious(0) probably_damaging(0.996) TCGA-XU-A92O-01 6 43038550 43038550 G T KLC4 Nonsense_Mutation p.E386* 0.14 TCGA-XU-A92O-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.30 deleterious(0.05) probably_damaging(0.992) TCGA-XU-A92O-01 7 82595728 82595728 G A PCLO Missense_Mutation p.P1126S 0.08 unknown(0) TCGA-XU-A92O-01 8 8748700 8748700 G - MFHAS1 Frame_Shift_Del p.V624Cfs*58 0.09 TCGA-XU-A92O-01 9 32785531 32785531 G A TMEM215 3'UTR 0.30 TCGA-XU-A92O-01 X 130409533 130409533 G A IGSF1 Missense_Mutation p.R1040C 0.58 tolerated(0.06) probably_damaging(0.969) TCGA-XU-A92O-01 X 154159467 154159467 C A F8 Missense_Mutation p.M866I 0.86 tolerated(0.6) benign(0) TCGA-XU-A92Q-01 10 118355749 118355749 C A PNLIPRP1 Silent p.S163S 0.08 TCGA-XU-A92Q-01 11 2167564 2167564 G A INS-IGF2 3'Flank 0.28 TCGA-XU-A92Q-01 11 533544 533544 A G HRAS Missense_Mutation p.L120P 0.40 deleterious(0) probably_damaging(0.979) TCGA-XU-A92Q-01 11 66613775 66613775 A G RCE1 3'UTR 0.48 TCGA-XU-A92Q-01 12 101776972 101776972 G A UTP20 Missense_Mutation p.E2604K 0.35 tolerated_low_confidence(0.18) benign(0.003) TCGA-XU-A92Q-01 12 70760622 70760622 C G KCNMB4 Silent p.G36G 0.45 TCGA-XU-A92Q-01 14 93397798 93397798 G T CHGA Missense_Mutation p.A187S 0.41 tolerated(0.21) possibly_damaging(0.492) TCGA-XU-A92Q-01 17 33319039 33319039 C T LIG3 Missense_Mutation p.S424L 0.35 deleterious(0) benign(0.07) TCGA-XU-A92Q-01 19 45495976 45495976 G A CLPTM1 Missense_Mutation p.V611M 0.35 tolerated(0.12) possibly_damaging(0.623) TCGA-XU-A92Q-01 19 9005592 9005592 A G MUC16 Missense_Mutation p.Y13272H 0.44 probably_damaging(0.999) TCGA-XU-A92Q-01 1 145116100 145116100 G A SEC22B RNA 0.22 TCGA-XU-A92Q-01 1 156390207 156390207 T C C1orf61 Intron 0.47 TCGA-XU-A92Q-01 1 248084839 248084839 C T OR2T8 Missense_Mutation p.H174Y 0.21 deleterious(0) benign(0.163) TCGA-XU-A92Q-01 20 37576538 37576538 T C FAM83D Missense_Mutation p.I254T 0.42 deleterious(0.04) probably_damaging(0.979) TCGA-XU-A92Q-01 2 179437644 179437644 T A TTN Missense_Mutation p.E24405D 0.65 TCGA-XU-A92Q-01 2 65495807 65495807 G A ACTR2 Missense_Mutation p.R380Q 0.44 deleterious(0.03) possibly_damaging(0.591) TCGA-XU-A92Q-01 3 169099264 169099264 A G MECOM Missense_Mutation p.M53T 0.49 tolerated(0.44) benign(0.022) TCGA-XU-A92Q-01 3 183400467 183400467 A G KLHL24 3'UTR 0.28 TCGA-XU-A92Q-01 3 55502679 55502680 TA - WNT5A 3'UTR 0.21 TCGA-XU-A92Q-01 6 105563600 105563600 G A BVES Missense_Mutation p.H307Y 0.42 tolerated(0.11) benign(0.136) TCGA-XU-A92Q-01 6 17764739 17764739 C A KIF13A Missense_Mutation p.A1674S 0.34 tolerated_low_confidence(0.06) probably_damaging(0.993) TCGA-XU-A92Q-01 6 31683343 31683343 C T LY6G6F 3'Flank 0.06 TCGA-XU-A92Q-01 7 129049331 129049331 G A AHCYL2 Missense_Mutation p.R437Q 0.35 tolerated(0.11) benign(0.165) TCGA-XU-A92Q-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.38 deleterious(0.05) probably_damaging(0.992) TCGA-XU-A92Q-01 7 99817770 99817770 A G PVRIG Missense_Mutation p.E51G 0.05 deleterious(0) benign(0.16) TCGA-XU-A92Q-01 9 109690685 109690685 G - ZNF462 Frame_Shift_Del p.V1498* 0.32 TCGA-XU-A92Q-01 9 123906272 123906272 A T CNTRL Missense_Mutation p.K988M 0.28 probably_damaging(0.95) TCGA-XU-A92Q-01 9 130236179 130236179 A G LRSAM1 Missense_Mutation p.D240G 0.38 tolerated(0.38) benign(0) TCGA-XU-A92Q-01 9 136230397 136230397 G A SURF4 Missense_Mutation p.S261F 0.29 deleterious(0) probably_damaging(1) TCGA-XU-A92Q-01 9 33472349 33472349 C T NOL6 Missense_Mutation p.R39H 0.52 tolerated(0.1) benign(0.008) TCGA-XU-A92Q-01 X 110494930 110494930 C T CAPN6 Missense_Mutation p.G247D 0.83 deleterious(0) probably_damaging(0.989) TCGA-XU-A92Q-01 X 148074769 148074769 T C AFF2 3'UTR 0.13 TCGA-XU-A92R-01 11 120996317 120996317 G C TECTA Missense_Mutation p.V504L 0.23 tolerated(0.36) benign(0.001) TCGA-XU-A92R-01 11 47593303 47593303 G A PTPMT1 3'UTR 0.12 TCGA-XU-A92R-01 12 70195489 70195489 G A RAB3IP Missense_Mutation p.C389Y 0.08 tolerated(0.05) probably_damaging(0.961) TCGA-XU-A92R-01 13 41515206 41515206 C T ELF1 Silent p.R369R 0.12 TCGA-XU-A92R-01 14 51561552 51561552 T G TRIM9 Missense_Mutation p.N36H 0.11 deleterious(0.02) benign(0.063) TCGA-XU-A92R-01 14 69254664 69254664 C T ZFP36L1 3'UTR 0.08 TCGA-XU-A92R-01 16 27523094 27523094 T C GTF3C1 Missense_Mutation p.M368V 0.20 tolerated(0.12) possibly_damaging(0.527) TCGA-XU-A92R-01 17 11700946 11700946 C A DNAH9 Missense_Mutation p.S2752R 0.12 benign(0.001) TCGA-XU-A92R-01 17 7366266 7366266 C T ZBTB4 Missense_Mutation p.A679T 0.17 benign(0.004) TCGA-XU-A92R-01 18 47793861 47793861 A C MBD1 3'Flank 0.14 TCGA-XU-A92R-01 18 9547300 9547300 G A PPP4R1 3'UTR 0.08 TCGA-XU-A92R-01 19 36332649 36332649 G A NPHS1 Missense_Mutation p.S928L 0.07 tolerated(0.16) benign(0.107) TCGA-XU-A92R-01 19 53302097 53302097 A G ZNF28 3'UTR 0.10 TCGA-XU-A92R-01 19 5772832 5772832 C T CATSPERD Silent p.D599D 0.11 TCGA-XU-A92R-01 1 27332418 27332418 T C FAM46B 3'UTR 0.12 TCGA-XU-A92R-01 1 34164425 34164425 G A CSMD2 Missense_Mutation p.R1245W 0.11 deleterious(0.01) possibly_damaging(0.892) TCGA-XU-A92R-01 1 46726520 46726520 T G RAD54L Missense_Mutation p.L200R 0.29 deleterious(0) probably_damaging(0.993) TCGA-XU-A92R-01 20 35507540 35507540 C T TLDC2 Missense_Mutation p.R96W 0.11 deleterious(0) possibly_damaging(0.846) TCGA-XU-A92R-01 22 36122858 36122858 T C APOL5 Missense_Mutation p.M248T 0.08 tolerated(0.21) possibly_damaging(0.477) TCGA-XU-A92R-01 2 191875098 191875098 A C STAT1 Intron 0.10 TCGA-XU-A92R-01 2 21227522 21227522 A G APOB Silent p.D3938D 0.10 TCGA-XU-A92R-01 2 241402847 241402847 C G GPC1 Silent p.P267P 0.10 TCGA-XU-A92R-01 3 158399829 158399829 T A GFM1 Nonsense_Mutation p.Y549* 0.11 TCGA-XU-A92R-01 4 1730225 1730225 C T TACC3 Missense_Mutation p.P366S 0.05 tolerated(0.06) benign(0.343) TCGA-XU-A92R-01 5 140262573 140262573 G A PCDHA13 Silent p.P240P 0.12 TCGA-XU-A92R-01 6 17615904 17615920 TCTAATCTATACAGAAT - NUP153 3'UTR 0.21 TCGA-XU-A92R-01 6 3851293 3851293 G T FAM50B 3'UTR 0.19 TCGA-XU-A92R-01 7 138597134 138597134 C T KIAA1549 Missense_Mutation p.R984H 0.16 deleterious(0.04) probably_damaging(0.939) TCGA-XU-A92R-01 7 150028151 150028151 C T ZBED6CL Nonsense_Mutation p.R220* 0.14 TCGA-XU-A92R-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.10 deleterious(0.05) probably_damaging(0.992) TCGA-XU-A92R-01 X 100387419 100387419 T G CENPI Missense_Mutation p.F482V 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-XU-A92R-01 X 153199411 153199411 T C NAA10 Missense_Mutation p.Y55C 0.15 deleterious(0) probably_damaging(0.999) TCGA-XU-A92T-01 10 17085825 17085825 C T CUBN Splice_Site p.X1277_splice 0.45 TCGA-XU-A92T-01 11 124016679 124016679 T - VWA5A 3'UTR 0.34 TCGA-XU-A92T-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.48 deleterious(0.02) probably_damaging(0.989) TCGA-XU-A92T-01 12 120565380 120565380 T C GCN1L1 3'UTR 0.54 TCGA-XU-A92T-01 12 7055845 7055845 C - PTPN6 5'Flank 0.27 TCGA-XU-A92T-01 14 22356040 22356040 G T TRAV12-2 5'UTR 0.15 TCGA-XU-A92T-01 15 32460504 32460504 G A CHRNA7 Missense_Mutation p.E481K 0.33 tolerated(0.19) benign(0.084) TCGA-XU-A92T-01 15 48064540 48064542 TTG - SEMA6D 3'UTR 0.36 TCGA-XU-A92T-01 16 71603777 71603777 A G TAT Missense_Mutation p.S369P 0.12 tolerated(0.05) possibly_damaging(0.59) TCGA-XU-A92T-01 16 9856839 9856839 G A GRIN2A 3'UTR 0.70 TCGA-XU-A92T-01 17 47373783 47373783 T C ZNF652 3'UTR 0.40 TCGA-XU-A92T-01 17 57057844 57057844 C T PPM1E Nonsense_Mutation p.Q574* 0.40 TCGA-XU-A92T-01 17 76046788 76046788 G A TNRC6C Missense_Mutation p.A549T 0.09 tolerated(0.1) probably_damaging(0.999) TCGA-XU-A92T-01 19 35085134 35085134 C A SCGB2B2 Missense_Mutation p.Q64H 0.47 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-XU-A92T-01 19 50753918 50753918 C A MYH14 Missense_Mutation p.D601E 0.61 tolerated(0.1) benign(0.121) TCGA-XU-A92T-01 1 111968033 111968033 T A OVGP1 Missense_Mutation p.I97F 0.42 deleterious(0.02) probably_damaging(0.966) TCGA-XU-A92T-01 1 150445793 150445793 T G RPRD2 Missense_Mutation p.F1457V 0.38 deleterious_low_confidence(0) unknown(0) TCGA-XU-A92T-01 1 25881384 25881384 A T LDLRAP1 Missense_Mutation p.T89S 0.47 tolerated(0.22) benign(0.069) TCGA-XU-A92T-01 1 56961307 56961307 A C PPAP2B 3'UTR 0.40 TCGA-XU-A92T-01 1 59787274 59787274 G T FGGY Missense_Mutation p.G18V 0.46 deleterious(0) probably_damaging(1) TCGA-XU-A92T-01 1 6305563 6305563 A G HES3 Missense_Mutation p.N186S 0.36 deleterious_low_confidence(0) benign(0.292) TCGA-XU-A92T-01 20 42355134 42355134 G C GTSF1L Missense_Mutation p.S67R 0.62 deleterious(0.01) probably_damaging(0.982) TCGA-XU-A92T-01 20 57581417 57581417 G A CTSZ Silent p.C89C 0.10 TCGA-XU-A92T-01 2 128384562 128384562 C T MYO7B Nonsense_Mutation p.Q1384* 0.43 TCGA-XU-A92T-01 2 224840133 224840133 A G SERPINE2 3'Flank 0.09 TCGA-XU-A92T-01 3 138668430 138668430 C T C3orf72 Missense_Mutation p.P57S 0.44 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-XU-A92T-01 3 47894496 47894496 C T MAP4 3'UTR 0.06 TCGA-XU-A92T-01 3 57843842 57843842 T C SLMAP Missense_Mutation p.S215P 0.46 deleterious(0) probably_damaging(0.994) TCGA-XU-A92T-01 4 124494 124494 G A ZNF718 RNA 0.44 TCGA-XU-A92T-01 4 71508185 71508185 C A ENAM Missense_Mutation p.P348T 0.32 deleterious(0.03) benign(0.273) TCGA-XU-A92T-01 5 38528850 38528850 A T LIFR Missense_Mutation p.Y79N 0.47 tolerated(0.07) benign(0.186) TCGA-XU-A92T-01 6 161533727 161533727 G A MAP3K4 Missense_Mutation p.R1516H 0.45 deleterious(0.01) probably_damaging(0.954) TCGA-XU-A92T-01 6 167412948 167412948 G T FGFR1OP Silent p.L16L 0.17 TCGA-XU-A92T-01 6 32096724 32096724 C T FKBPL Silent p.V278V 0.46 TCGA-XU-A92T-01 6 38851748 38851748 C T DNAH8 Missense_Mutation p.P2528S 0.35 probably_damaging(1) TCGA-XU-A92T-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.46 deleterious(0.05) probably_damaging(0.992) TCGA-XU-A92T-01 8 29004915 29004915 T C KIF13B Missense_Mutation p.E673G 0.13 deleterious(0) possibly_damaging(0.755) TCGA-XU-A92T-01 8 67926672 67926673 TT - PPP1R42 Frame_Shift_Del p.K95Tfs*29 0.28 TCGA-XU-A92T-01 X 108787700 108787700 A T NXT2 3'UTR 0.38 TCGA-XU-A92T-01 X 129270037 129270037 G A AIFM1 Missense_Mutation p.R430C 0.54 deleterious(0) probably_damaging(0.966) TCGA-XU-A92T-01 X 43817966 43817966 C T NDP 5'UTR 0.21 TCGA-XU-A92T-01 X 54956354 54956354 A G TRO Missense_Mutation p.N1066S 0.53 tolerated(1) benign(0.023) TCGA-XU-A92T-01 X 71351032 71351032 G C RGAG4 Missense_Mutation p.P120R 0.67 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-XU-A92U-01 11 134028286 134028286 A G NCAPD3 Silent p.H1324H 0.17 TCGA-XU-A92U-01 12 104381509 104381509 A G TDG 3'UTR 0.11 TCGA-XU-A92U-01 12 69969165 69969165 G A FRS2 3'UTR 0.11 TCGA-XU-A92U-01 12 75710214 75710214 A G CAPS2 Missense_Mutation p.C176R 0.11 tolerated(0.58) benign(0.298) TCGA-XU-A92U-01 15 43236428 43236428 C T UBR1 3'UTR 0.07 TCGA-XU-A92U-01 16 65038702 65038702 G A CDH11 Missense_Mutation p.A24V 0.17 tolerated(0.56) benign(0) TCGA-XU-A92U-01 16 72094699 72094699 T A HP Missense_Mutation p.F377L 0.07 deleterious(0.01) probably_damaging(0.963) TCGA-XU-A92U-01 17 42982079 42982079 A G FAM187A Silent p.P294P 0.15 TCGA-XU-A92U-01 17 45747113 45747113 G A KPNB1 Missense_Mutation p.V432I 0.10 tolerated(0.97) benign(0.001) TCGA-XU-A92U-01 18 19408875 19408875 A G MIB1 Intron 0.17 TCGA-XU-A92U-01 19 36018661 36018661 G C SBSN Missense_Mutation p.H175D 0.11 deleterious(0.01) possibly_damaging(0.801) TCGA-XU-A92U-01 19 54183231 54183231 T C MIR519E RNA 0.06 TCGA-XU-A92U-01 1 16802417 16802417 C T CROCCP3 RNA 0.24 TCGA-XU-A92U-01 22 17472970 17472970 G - GAB4 Frame_Shift_Del p.L91Cfs*6 0.11 TCGA-XU-A92U-01 22 38373910 38373910 A G SOX10 Missense_Mutation p.S221P 0.13 tolerated(0.12) possibly_damaging(0.638) TCGA-XU-A92U-01 2 148686591 148686591 C T ACVR2A 3'UTR 0.11 TCGA-XU-A92U-01 2 153493018 153493018 C T FMNL2 Missense_Mutation p.H920Y 0.12 benign(0.291) TCGA-XU-A92U-01 2 196912090 196912090 A G DNAH7 Silent p.L128L 0.09 TCGA-XU-A92U-01 2 79349973 79349973 C T REG1A Missense_Mutation p.R110C 0.08 tolerated(0.07) benign(0) TCGA-XU-A92U-01 3 16269720 16269720 C T GALNT15 3'UTR 0.06 TCGA-XU-A92U-01 3 50334197 50334197 G - NAT6 Frame_Shift_Del p.P255Qfs*19 0.14 TCGA-XU-A92U-01 3 58092549 58092549 C T FLNB Silent p.S630S 0.11 TCGA-XU-A92U-01 5 73183500 73183500 C G ARHGEF28 Missense_Mutation p.A1128G 0.11 deleterious(0) possibly_damaging(0.656) TCGA-XU-A92U-01 6 108365526 108365526 T C OSTM1 3'UTR 0.07 TCGA-XU-A92U-01 6 152423971 152423971 C T ESR1 3'UTR 0.06 TCGA-XU-A92U-01 6 96654941 96654941 A G FUT9 3'UTR 0.06 TCGA-XU-A92U-01 7 128547404 128547404 G A AC025594.1 3'Flank 0.10 TCGA-XU-A92U-01 7 138968003 138968003 T A UBN2 Silent p.P784P 0.11 TCGA-XU-A92U-01 7 151919744 151919744 T C KMT2C Missense_Mutation p.N1116S 0.06 probably_damaging(0.997) TCGA-XU-A92U-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.07 deleterious(0.05) probably_damaging(0.992) TCGA-XU-A92V-01 10 124390692 124390692 G T DMBT1 Missense_Mutation p.D1952Y 0.33 deleterious(0) probably_damaging(0.995) TCGA-XU-A92V-01 12 109637257 109637257 A C ACACB Missense_Mutation p.D893A 0.30 deleterious(0) probably_damaging(1) TCGA-XU-A92V-01 12 53837543 53837543 C T PRR13 Missense_Mutation p.H130Y 0.18 deleterious_low_confidence(0) unknown(0) TCGA-XU-A92V-01 13 84454909 84454909 G T SLITRK1 Missense_Mutation p.T245N 0.19 tolerated(0.12) benign(0.003) TCGA-XU-A92V-01 14 21542584 21542584 A G ARHGEF40 Missense_Mutation p.N232S 0.26 tolerated(0.06) probably_damaging(0.952) TCGA-XU-A92V-01 16 4802891 4802891 C T ZNF500 Missense_Mutation p.G310D 0.08 tolerated(0.34) benign(0.063) TCGA-XU-A92V-01 16 48594885 48594885 T C N4BP1 Missense_Mutation p.N557D 0.35 tolerated(0.32) benign(0.034) TCGA-XU-A92V-01 16 71890808 71890808 T A ATXN1L 3'UTR 0.22 TCGA-XU-A92V-01 17 7216353 7216353 C T GPS2 Missense_Mutation p.G299R 0.11 tolerated_low_confidence(0.21) possibly_damaging(0.635) TCGA-XU-A92V-01 17 7531071 7531071 G - SAT2 5'UTR 0.15 TCGA-XU-A92V-01 17 8091736 8091736 A C C17orf59 3'UTR 0.32 TCGA-XU-A92V-01 19 13265169 13265173 ACTTG - IER2 3'UTR 0.36 TCGA-XU-A92V-01 19 1754836 1754836 C A ONECUT3 Nonsense_Mutation p.S392* 0.32 TCGA-XU-A92V-01 19 42462498 42462498 A G RABAC1 Missense_Mutation p.F103L 0.15 tolerated(0.55) probably_damaging(0.915) TCGA-XU-A92V-01 19 55396876 55396876 C T FCAR Silent p.C100C 0.29 TCGA-XU-A92V-01 19 56539531 56539531 C T NLRP5 Silent p.D644D 0.18 TCGA-XU-A92V-01 1 144814801 144814801 G T NBPF9 Missense_Mutation p.D146Y 0.38 deleterious(0.01) benign(0.004) TCGA-XU-A92V-01 1 22211815 22211815 C T HSPG2 Missense_Mutation p.C403Y 0.09 probably_damaging(1) TCGA-XU-A92V-01 1 235507299 235507299 C G GGPS1 3'UTR 0.38 TCGA-XU-A92V-01 1 29189517 29189517 G A OPRD1 Missense_Mutation p.V281I 0.27 tolerated(0.44) benign(0.164) TCGA-XU-A92V-01 20 56227302 56227302 C T PMEPA1 Missense_Mutation p.R224H 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-XU-A92V-01 21 45177946 45177946 G C PDXK 3'UTR 0.38 TCGA-XU-A92V-01 22 24447319 24447319 C T CABIN1 Missense_Mutation p.A230V 0.07 tolerated(0.16) benign(0.146) TCGA-XU-A92V-01 22 37334245 37334245 C T CSF2RB Missense_Mutation p.R799C 0.16 deleterious(0) benign(0.443) TCGA-XU-A92V-01 2 164466135 164466135 A T FIGN Missense_Mutation p.I736N 0.28 deleterious(0) possibly_damaging(0.556) TCGA-XU-A92V-01 2 234749861 234749861 G A HJURP Missense_Mutation p.S522L 0.33 tolerated(0.17) benign(0.346) TCGA-XU-A92V-01 2 234750245 234750245 G C HJURP Missense_Mutation p.A394G 0.28 deleterious(0) benign(0.211) TCGA-XU-A92V-01 2 234750577 234750577 G C HJURP Missense_Mutation p.I283M 0.39 deleterious(0) probably_damaging(0.997) TCGA-XU-A92V-01 2 234750681 234750681 G A HJURP Missense_Mutation p.P249S 0.18 tolerated(1) benign(0) TCGA-XU-A92V-01 2 234750835 234750835 G C HJURP Missense_Mutation p.I197M 0.33 deleterious(0.03) benign(0.018) TCGA-XU-A92V-01 2 66666984 66666984 C T MEIS1 Silent p.L83L 0.05 TCGA-XU-A92V-01 2 74708427 74708427 A C CCDC142 Missense_Mutation p.L394R 0.52 tolerated(0.06) probably_damaging(0.999) TCGA-XU-A92V-01 2 97039200 97039200 A G NCAPH 3'UTR 0.62 TCGA-XU-A92V-01 4 23814740 23814740 T C PPARGC1A Missense_Mutation p.Y601C 0.47 tolerated_low_confidence(0.21) unknown(0) TCGA-XU-A92V-01 5 114547535 114547535 C T PGGT1B 3'UTR 0.13 TCGA-XU-A92V-01 6 117246707 117246707 G C RFX6 Missense_Mutation p.K590N 0.17 tolerated(0.06) possibly_damaging(0.566) TCGA-XU-A92V-01 6 144744742 144744742 C T UTRN Nonsense_Mutation p.Q98* 0.09 TCGA-XU-A92V-01 6 28134312 28134312 C G ZNF192P1 RNA 0.44 TCGA-XU-A92V-01 6 32920785 32920785 G A HLA-DMA Missense_Mutation p.A10V 0.33 tolerated_low_confidence(0.25) benign(0.004) TCGA-XU-A92V-01 7 127250823 127250823 G A PAX4 3'UTR 0.31 TCGA-XU-A92V-01 7 137330273 137330273 C T DGKI Missense_Mutation p.R250H 0.27 tolerated(0.25) probably_damaging(0.998) TCGA-XU-A92V-01 7 40173957 40173957 G A MPLKIP Silent p.G70G 0.50 TCGA-XU-A92V-01 7 51287490 51287490 C T COBL Missense_Mutation p.V65I 0.32 tolerated(0.55) benign(0.106) TCGA-XU-A92V-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.29 deleterious(0.05) probably_damaging(0.992) TCGA-XU-A92V-01 7 86825068 86825068 G C DMTF1 3'UTR 0.34 TCGA-XU-A92V-01 7 92732416 92732416 T C SAMD9 Missense_Mutation p.S999G 0.05 deleterious(0.01) benign(0.08) TCGA-XU-A92V-01 9 116136276 116136276 G T HDHD3 Missense_Mutation p.T120N 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-XU-A92V-01 9 136584094 136584094 C A SARDH Missense_Mutation p.G329V 0.08 deleterious(0) probably_damaging(0.99) TCGA-XU-A92V-01 9 35808516 35808516 T C NPR2 Missense_Mutation p.I908T 0.30 deleterious(0) probably_damaging(0.999) TCGA-XU-A92V-01 X 135428327 135428327 G A GPR112 Missense_Mutation p.G821D 0.32 tolerated(0.88) benign(0) TCGA-XU-A92V-01 X 68381198 68381198 C A PJA1 Missense_Mutation p.K628N 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-XU-A92W-01 11 17794040 17794040 G A KCNC1 Missense_Mutation p.G467R 0.12 tolerated(0.07) probably_damaging(1) TCGA-XU-A92W-01 12 93155577 93155577 C A PLEKHG7 Silent p.L250L 0.07 TCGA-XU-A92W-01 15 42167711 42167711 C T SPTBN5 Missense_Mutation p.R1411H 0.17 benign(0.023) TCGA-XU-A92W-01 17 29226104 29226104 C A TEFM 3'UTR 0.08 TCGA-XU-A92W-01 17 39086254 39086254 G A KRT23 Silent p.L192L 0.06 TCGA-XU-A92W-01 17 59147477 59147477 C T BCAS3 Intron 0.09 TCGA-XU-A92W-01 18 28721976 28721976 G A DSC1 Silent p.L416L 0.06 TCGA-XU-A92W-01 18 33795765 33795765 T C MOCOS Missense_Mutation p.V541A 0.12 tolerated(0.36) benign(0.007) TCGA-XU-A92W-01 19 11352524 11352524 G T C19orf80 3'UTR 0.13 TCGA-XU-A92W-01 19 39899626 39899626 C T ZFP36 3'UTR 0.06 TCGA-XU-A92W-01 1 166960676 166960676 C T MAEL Missense_Mutation p.P96L 0.06 tolerated(0.67) benign(0.001) TCGA-XU-A92W-01 20 47324938 47324938 C T PREX1 Missense_Mutation p.G215S 0.06 tolerated(0.6) benign(0.037) TCGA-XU-A92W-01 22 19907084 19907084 C T TXNRD2 Missense_Mutation p.V71M 0.06 deleterious(0) probably_damaging(1) TCGA-XU-A92W-01 2 178362450 178362450 T C AGPS Missense_Mutation p.F440S 0.05 tolerated(0.16) benign(0.063) TCGA-XU-A92W-01 2 1893172 1893172 G A MYT1L Silent p.C785C 0.12 TCGA-XU-A92W-01 5 147902848 147902848 C T HTR4 Missense_Mutation p.A139T 0.05 tolerated(0.38) benign(0.02) TCGA-XU-A92W-01 6 2840809 2840809 C T SERPINB1 Silent p.L4L 0.11 TCGA-XU-A92W-01 6 35051979 35051979 A C ANKS1A Missense_Mutation p.T1026P 0.05 deleterious(0) probably_damaging(0.976) TCGA-XU-A92W-01 9 116226116 116226116 A G RGS3 Intron 0.10 TCGA-XU-A92W-01 9 131122709 131122709 G A SLC27A4 Missense_Mutation p.R624H 0.08 tolerated(0.35) benign(0.003) TCGA-XU-A92W-01 9 95072926 95072926 A G NOL8 Missense_Mutation p.F835S 0.06 deleterious(0) probably_damaging(1) TCGA-XU-A92X-01 10 49944159 49944159 G A WDFY4 Intron 0.12 TCGA-XU-A92X-01 13 98668997 98668997 T C IPO5 Silent p.V854V 0.11 TCGA-XU-A92X-01 14 71051621 71051621 G A MED6 Missense_Mutation p.T217I 0.13 tolerated(0.15) benign(0.006) TCGA-XU-A92X-01 15 102294284 102294284 G A DNM1P47 RNA 0.09 TCGA-XU-A92X-01 15 81614806 81614806 T C STARD5 Silent p.L75L 0.30 TCGA-XU-A92X-01 16 818476 818476 G A MSLN Missense_Mutation p.R573Q 0.16 tolerated(0.39) benign(0.021) TCGA-XU-A92X-01 19 14512563 14512563 G T CD97 Nonsense_Mutation p.E392* 0.24 TCGA-XU-A92X-01 19 37310854 37310854 T C ZNF790 Missense_Mutation p.Q131R 0.20 tolerated(0.19) benign(0.012) TCGA-XU-A92X-01 19 38055328 38055328 T G ZNF571 3'UTR 0.35 TCGA-XU-A92X-01 1 114306101 114306101 T G RSBN1 3'UTR 0.13 TCGA-XU-A92X-01 2 20402485 20402485 G A SDC1 3'UTR 0.10 TCGA-XU-A92X-01 3 42632307 42632307 G A SS18L2 5'UTR 0.17 TCGA-XU-A92X-01 5 114547535 114547535 C T PGGT1B 3'UTR 0.05 TCGA-XU-A92X-01 6 44081872 44081872 C T MRPL14 Missense_Mutation p.S49N 0.29 tolerated(0.24) benign(0.016) TCGA-XU-A92X-01 7 65579923 65579923 C T CRCP 5'UTR 0.17 TCGA-XU-A92X-01 9 102584328 102584328 G A NR4A3 5'Flank 0.16 TCGA-XU-A92Y-01 10 115374703 115374703 C T NRAP Silent p.T1027T 0.14 TCGA-XU-A92Y-01 10 90034702 90034703 - C RNLS 3'UTR 0.15 TCGA-XU-A92Y-01 11 58893330 58893330 T C FAM111B Missense_Mutation p.I587T 0.12 tolerated(0.2) benign(0.262) TCGA-XU-A92Y-01 17 42756399 42756399 T C CCDC43 Missense_Mutation p.N167S 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-XU-A92Y-01 17 76497282 76497282 T C DNAH17 Missense_Mutation p.T1809A 0.11 probably_damaging(0.999) TCGA-XU-A92Y-01 17 76969290 76969290 G C LGALS3BP Missense_Mutation p.H131D 0.14 deleterious(0) possibly_damaging(0.791) TCGA-XU-A92Y-01 17 80012657 80012657 G A GPS1 Missense_Mutation p.V234I 0.13 tolerated(0.46) benign(0.012) TCGA-XU-A92Y-01 19 4047343 4047343 A C ZBTB7A 3'UTR 0.16 TCGA-XU-A92Y-01 1 103540214 103540214 G A COL11A1 Missense_Mutation p.T204M 0.11 possibly_damaging(0.588) TCGA-XU-A92Y-01 1 155265093 155265093 C T PKLR Missense_Mutation p.G170S 0.14 tolerated(0.51) benign(0.433) TCGA-XU-A92Y-01 1 182568694 182568694 G A RGS16 3'UTR 0.19 TCGA-XU-A92Y-01 2 239973204 239973204 T C HDAC4 3'UTR 0.08 TCGA-XU-A92Y-01 5 140730598 140730598 C T PCDHGB1 Silent p.S257S 0.07 TCGA-XU-A92Y-01 5 180622588 180622588 C T TRIM7 Missense_Mutation p.D372N 0.06 deleterious(0.04) probably_damaging(0.99) TCGA-XU-A92Y-01 6 154763352 154763352 T C CNKSR3 Missense_Mutation p.N97D 0.11 tolerated(0.08) possibly_damaging(0.499) TCGA-XU-A92Y-01 7 133977019 133977019 A T SLC35B4 3'UTR 0.12 TCGA-XU-A92Y-01 7 94293816 94293816 G A PEG10 Silent p.S316S 0.10 TCGA-XU-A92Y-01 9 98206031 98206031 T - PTCH1 3'UTR 0.12 TCGA-XU-A92Y-01 X 63409392 63409392 G A AMER1 3'UTR 0.11 TCGA-XU-A92Z-01 10 46111437 46111438 - A ZFAND4 3'UTR 0.17 TCGA-XU-A92Z-01 11 65268651 65268651 T C MALAT1 RNA 0.05 TCGA-XU-A92Z-01 11 65269764 65269765 - T MALAT1 RNA 0.28 TCGA-XU-A92Z-01 12 132683757 132683757 G A GALNT9 Missense_Mutation p.R121W 0.41 deleterious(0.03) possibly_damaging(0.846) TCGA-XU-A92Z-01 12 57923485 57923485 T C MBD6 3'UTR 0.30 TCGA-XU-A92Z-01 13 28536396 28536396 T A CDX2 3'UTR 0.32 TCGA-XU-A92Z-01 13 28536397 28536397 C A CDX2 3'UTR 0.32 TCGA-XU-A92Z-01 15 56384481 56384482 - T RFX7 3'UTR 0.24 TCGA-XU-A92Z-01 16 4414634 4414634 G A CORO7 Silent p.T367T 0.10 TCGA-XU-A92Z-01 17 25756876 25756876 G A TBC1D3P5 RNA 0.24 TCGA-XU-A92Z-01 18 44198208 44198208 G A LOXHD1 Missense_Mutation p.A186V 0.10 deleterious(0) possibly_damaging(0.866) TCGA-XU-A92Z-01 18 67997176 67997176 C A SOCS6 3'UTR 0.31 TCGA-XU-A92Z-01 19 10205575 10205575 G C ANGPTL6 Missense_Mutation p.R208G 0.39 tolerated(0.43) benign(0.001) TCGA-XU-A92Z-01 19 11141406 11141406 G T SMARCA4 Missense_Mutation p.G1128V 0.26 probably_damaging(1) TCGA-XU-A92Z-01 19 21300350 21300350 A - ZNF714 Frame_Shift_Del p.N294Tfs*11 0.25 TCGA-XU-A92Z-01 19 58773494 58773494 G A ZNF544 Missense_Mutation p.V508I 0.39 tolerated(1) benign(0.003) TCGA-XU-A92Z-01 19 7913876 7913876 G A EVI5L Missense_Mutation p.D133N 0.31 tolerated(0.29) probably_damaging(0.984) TCGA-XU-A92Z-01 19 9088508 9088508 C T MUC16 Missense_Mutation p.V1103I 0.23 unknown(0) TCGA-XU-A92Z-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.28 tolerated(0.06) benign(0.006) TCGA-XU-A92Z-01 1 145116100 145116100 G A SEC22B RNA 0.16 TCGA-XU-A92Z-01 1 160098515 160098515 C T ATP1A2 Missense_Mutation p.T364M 0.60 deleterious(0) probably_damaging(1) TCGA-XU-A92Z-01 1 186159232 186159232 T G HMCN1 3'UTR 0.44 TCGA-XU-A92Z-01 1 28536509 28536509 C A DNAJC8 Missense_Mutation p.A125S 0.25 deleterious(0.05) possibly_damaging(0.452) TCGA-XU-A92Z-01 22 30050679 30050679 G T NF2 Nonsense_Mutation p.G161* 0.46 TCGA-XU-A92Z-01 22 32330345 32330345 G T C22orf24 Missense_Mutation p.P81H 0.23 deleterious_low_confidence(0) benign(0.15) TCGA-XU-A92Z-01 22 43089044 43089044 G T A4GALT Missense_Mutation p.P305Q 0.17 tolerated(0.65) benign(0.012) TCGA-XU-A92Z-01 2 20451125 20451125 T C PUM2 3'UTR 0.36 TCGA-XU-A92Z-01 2 242128131 242128131 T C ANO7 Silent p.A35A 0.14 TCGA-XU-A92Z-01 2 25043661 25043661 C T ADCY3 Missense_Mutation p.D1062N 0.28 deleterious(0) probably_damaging(1) TCGA-XU-A92Z-01 3 129252864 129252864 G A RHO 3'UTR 0.35 TCGA-XU-A92Z-01 3 129278491 129278491 C T PLXND1 Missense_Mutation p.D1757N 0.07 deleterious(0) probably_damaging(1) TCGA-XU-A92Z-01 3 133663955 133663955 G A SLCO2A1 Missense_Mutation p.A482V 0.09 tolerated(0.32) benign(0.005) TCGA-XU-A92Z-01 5 138716555 138716555 C T SLC23A1 Missense_Mutation p.S110N 0.30 deleterious(0.03) possibly_damaging(0.498) TCGA-XU-A92Z-01 5 140615380 140615380 C T PCDHB18 RNA 0.35 TCGA-XU-A92Z-01 6 160210651 160210651 C T TCP1 5'UTR 0.57 TCGA-XU-A92Z-01 6 99285379 99285379 C A POU3F2 3'UTR 0.42 TCGA-XU-A92Z-01 7 92098389 92098389 C T ERVW-1 Missense_Mutation p.G436E 0.42 tolerated(0.7) benign(0) TCGA-XU-A92Z-01 9 135862743 135862743 A C GFI1B Missense_Mutation p.N59H 0.20 tolerated(0.12) benign(0.001) TCGA-XU-A92Z-01 9 35748561 35748561 A T GBA2 Missense_Mutation p.S47R 0.38 tolerated_low_confidence(0.12) benign(0.002) TCGA-XU-A930-01 10 105793064 105793064 G A COL17A1 Missense_Mutation p.P1409L 0.06 unknown(0) TCGA-XU-A930-01 10 468931 468931 T C DIP2C Missense_Mutation p.D146G 0.08 tolerated(0.18) benign(0) TCGA-XU-A930-01 11 85979560 85979560 A G EED Missense_Mutation p.Y308C 0.25 deleterious(0) probably_damaging(1) TCGA-XU-A930-01 12 76424507 76424507 G A PHLDA1 Missense_Mutation p.P339S 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-XU-A930-01 12 81799641 81799641 T G PPFIA2 Missense_Mutation p.K229N 0.17 tolerated(0.11) benign(0.062) TCGA-XU-A930-01 13 41932577 41932577 G T NAA16 Nonsense_Mutation p.E409* 0.17 TCGA-XU-A930-01 14 23794637 23794637 G C PABPN1 3'UTR 0.10 TCGA-XU-A930-01 14 54944212 54944212 C T GMFB 3'UTR 0.44 TCGA-XU-A930-01 15 43525533 43525533 G T TGM5 Silent p.V673V 0.15 TCGA-XU-A930-01 15 75692406 75692406 T C SIN3A Missense_Mutation p.Y610C 0.09 deleterious(0) probably_damaging(0.995) TCGA-XU-A930-01 15 84639319 84639319 C T ADAMTSL3 Silent p.L858L 0.23 TCGA-XU-A930-01 17 18042211 18042211 G T MYO15A Missense_Mutation p.E1698D 0.15 unknown(0) TCGA-XU-A930-01 17 34071991 34071991 C T GAS2L2 Missense_Mutation p.G842E 0.11 tolerated(0.72) benign(0.011) TCGA-XU-A930-01 17 58326917 58326917 C T USP32 Intron 0.18 TCGA-XU-A930-01 17 7145585 7145585 C T GABARAP Missense_Mutation p.R22Q 0.24 deleterious(0) benign(0.111) TCGA-XU-A930-01 17 8661763 8661763 C T SPDYE4 5'UTR 0.21 TCGA-XU-A930-01 18 10471541 10471541 C T APCDD1 Missense_Mutation p.S86L 0.16 deleterious(0) benign(0.234) TCGA-XU-A930-01 19 11591562 11591562 C T ELAVL3 5'UTR 0.12 TCGA-XU-A930-01 19 37958773 37958773 T A ZNF570 5'Flank 0.08 TCGA-XU-A930-01 19 7536823 7536823 C T ARHGEF18 3'UTR 0.18 TCGA-XU-A930-01 1 171956945 171956945 G A DNM3 Missense_Mutation p.V129M 0.15 deleterious(0.01) possibly_damaging(0.898) TCGA-XU-A930-01 1 173907552 173907552 A T RC3H1 3'UTR 0.04 TCGA-XU-A930-01 1 202464470 202464470 C T PPP1R12B Missense_Mutation p.T732M 0.11 deleterious(0) benign(0.391) TCGA-XU-A930-01 1 209605572 209605573 - GG MIR205HG RNA 0.15 TCGA-XU-A930-01 1 3392574 3392574 G A ARHGEF16 Missense_Mutation p.R474H 0.21 deleterious(0.01) probably_damaging(0.968) TCGA-XU-A930-01 1 44685818 44685818 G A DMAP1 Missense_Mutation p.R394H 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-XU-A930-01 1 70385045 70385045 G A LRRC7 Intron 0.13 TCGA-XU-A930-01 22 31655188 31655188 G T LIMK2 Missense_Mutation p.A91S 0.15 deleterious(0.05) benign(0.19) TCGA-XU-A930-01 2 103324903 103324903 G A SLC9A2 Silent p.S798S 0.08 TCGA-XU-A930-01 2 121554871 121554871 G A GLI2 5'UTR 0.12 TCGA-XU-A930-01 2 178483443 178483443 G A TTC30A 5'UTR 0.15 TCGA-XU-A930-01 2 189909916 189909916 G A COL5A2 Missense_Mutation p.R1118C 0.15 unknown(0) TCGA-XU-A930-01 2 213866103 213866104 - T IKZF2 3'UTR 0.15 TCGA-XU-A930-01 3 47933312 47933312 A C MAP4 Intron 0.13 TCGA-XU-A930-01 5 178994537 178994537 G C RUFY1 Silent p.V226V 0.13 TCGA-XU-A930-01 6 55638913 55638913 G A BMP5 Nonsense_Mutation p.R321* 0.22 TCGA-XU-A930-01 7 100395209 100395209 C T ZAN Nonsense_Mutation p.Q2701* 0.16 TCGA-XU-A930-01 7 103008481 103008481 C T PSMC2 Missense_Mutation p.R428C 0.26 deleterious(0) possibly_damaging(0.487) TCGA-XU-A930-01 8 134271449 134271449 C T NDRG1 Silent p.Q117Q 0.07 TCGA-XU-A930-01 9 130552363 130552363 T A CDK9 3'UTR 0.14 TCGA-XU-A930-01 9 14084290 14084290 T C NFIB 3'Flank 0.12 TCGA-XU-A930-01 9 15510275 15510275 G C PSIP1 5'UTR 0.17 TCGA-XU-A930-01 X 56591880 56591880 C T UBQLN2 Missense_Mutation p.P525L 0.07 tolerated(0.06) unknown(0) TCGA-XU-A930-01 X 99925838 99925838 A C SRPX2 Missense_Mutation p.M418L 0.30 tolerated(0.09) benign(0.001) TCGA-XU-A931-01 11 62678157 62678157 G A CHRM1 Missense_Mutation p.P139L 0.17 tolerated(0.07) benign(0.18) TCGA-XU-A931-01 12 3043639 3043639 C T TULP3 Missense_Mutation p.T279I 0.40 deleterious(0.02) probably_damaging(0.942) TCGA-XU-A931-01 13 20067590 20067590 T C TPTE2 Silent p.E21E 0.08 TCGA-XU-A931-01 14 94468008 94468008 G - LINC00521 RNA 0.11 TCGA-XU-A931-01 17 41167684 41167684 G A VAT1 3'UTR 0.10 TCGA-XU-A931-01 17 4801118 4801118 G - CHRNE 3'UTR 0.08 TCGA-XU-A931-01 19 16630924 16630925 AG - C19orf44 3'UTR 0.24 TCGA-XU-A931-01 19 2213696 2213696 T A DOT1L Intron 0.19 TCGA-XU-A931-01 19 2438381 2438381 G A LMNB2 Silent p.L184L 0.22 TCGA-XU-A931-01 1 65693159 65693159 A G AK4 3'UTR 0.04 TCGA-XU-A931-01 21 40824000 40824000 G A SH3BGR Missense_Mutation p.G56E 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-XU-A931-01 22 37770213 37770213 G A ELFN2 Silent p.H454H 0.12 TCGA-XU-A931-01 22 40425800 40425800 C A FAM83F 3'UTR 0.15 TCGA-XU-A931-01 2 216877966 216877966 G A MREG Missense_Mutation p.P29S 0.25 tolerated(0.08) possibly_damaging(0.848) TCGA-XU-A931-01 3 52696266 52696266 A G PBRM1 Silent p.A137A 0.08 TCGA-XU-A931-01 4 155237053 155237053 C T DCHS2 Missense_Mutation p.A1248T 0.21 tolerated(0.15) benign(0.284) TCGA-XU-A931-01 4 4322905 4322905 C T ZBTB49 Silent p.D720D 0.08 TCGA-XU-A931-01 5 10353997 10353997 C - MARCH6 5'UTR 0.12 TCGA-XU-A931-01 5 139740940 139740940 A G SLC4A9 Missense_Mutation p.R189G 0.15 deleterious(0.03) benign(0.013) TCGA-XU-A931-01 5 167379631 167379631 C G TENM2 Missense_Mutation p.P251A 0.41 tolerated_low_confidence(0.22) benign(0.203) TCGA-XU-A931-01 5 5460800 5460800 A C KIAA0947 Missense_Mutation p.E451D 0.34 tolerated(0.22) benign(0.048) TCGA-XU-A931-01 5 82808697 82808697 A G VCAN Intron 0.05 TCGA-XU-A931-01 7 100487085 100487085 G T UFSP1 5'UTR 0.29 TCGA-XU-A931-01 7 39736352 39736352 T C RALA Missense_Mutation p.L131S 0.14 deleterious(0) probably_damaging(0.922) TCGA-XU-A931-01 8 116423407 116423407 C G TRPS1 3'UTR 0.43 TCGA-XU-A931-01 8 146202302 146202302 G A ZNF252P RNA 0.29 TCGA-XU-A932-01 10 126670294 126670294 A G ZRANB1 Missense_Mutation p.K482E 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-XU-A932-01 10 69676068 69676068 C T SIRT1 Silent p.G654G 0.08 TCGA-XU-A932-01 11 47839662 47839662 T C NUP160 Silent p.Q459Q 0.10 TCGA-XU-A932-01 11 73366861 73366861 C G PLEKHB1 Missense_Mutation p.A135G 0.10 tolerated(0.18) benign(0.015) TCGA-XU-A932-01 12 125270919 125270919 C T SCARB1 Missense_Mutation p.C462Y 0.11 tolerated(0.67) benign(0.001) TCGA-XU-A932-01 12 59271546 59271546 A G LRIG3 Silent p.P724P 0.09 TCGA-XU-A932-01 15 102304278 102304278 T C DNM1P47 RNA 0.24 TCGA-XU-A932-01 15 91428302 91428302 C - FES Frame_Shift_Del p.Q11Rfs*20 0.09 TCGA-XU-A932-01 16 57506462 57506462 G - DOK4 3'UTR 0.10 TCGA-XU-A932-01 17 55950203 55950203 C - CUEDC1 Frame_Shift_Del p.G202Afs*45 0.09 TCGA-XU-A932-01 19 47230756 47230756 C - STRN4 Frame_Shift_Del p.D408Tfs*79 0.08 TCGA-XU-A932-01 1 16892260 16892260 A G NBPF1 Silent p.L978L 0.04 TCGA-XU-A932-01 1 40030806 40030806 C A PABPC4 Missense_Mutation p.G406V 0.06 deleterious(0.01) possibly_damaging(0.52) TCGA-XU-A932-01 1 9804582 9804582 G C CLSTN1 Missense_Mutation p.Q369E 0.15 tolerated(0.05) possibly_damaging(0.588) TCGA-XU-A932-01 21 47417640 47417640 C T COL6A1 Silent p.A496A 0.09 TCGA-XU-A932-01 2 85553937 85553937 A G TGOLN2 Silent p.S306S 0.07 TCGA-XU-A932-01 3 10183565 10183565 G A VHL Missense_Mutation p.E12K 0.17 tolerated_low_confidence(0.09) benign(0.305) TCGA-XU-A932-01 3 132215386 132215386 A G DNAJC13 Silent p.K1345K 0.05 TCGA-XU-A932-01 3 8977615 8977615 T C RAD18 Missense_Mutation p.R277G 0.05 deleterious(0) probably_damaging(0.999) TCGA-XU-A932-01 4 103808781 103808781 A G CISD2 3'UTR 0.10 TCGA-XU-A932-01 5 139725551 139725551 G A HBEGF Silent p.G55G 0.08 TCGA-XU-A932-01 9 139369472 139369472 C T SEC16A Missense_Mutation p.D866N 0.10 tolerated(0.14) possibly_damaging(0.599) TCGA-XU-A933-01 10 49791103 49791103 C T ARHGAP22 Nonsense_Mutation p.W43* 0.17 TCGA-XU-A933-01 11 104970124 104970124 G T CARD17 Missense_Mutation p.T100N 0.28 tolerated(0.87) benign(0.002) TCGA-XU-A933-01 11 61570286 61570286 C T FADS1 Missense_Mutation p.A481T 0.08 deleterious(0.04) probably_damaging(0.969) TCGA-XU-A933-01 12 12048324 12048324 A T ETV6 3'UTR 0.47 TCGA-XU-A933-01 13 50590701 50590701 C G TRIM13 3'Flank 0.26 TCGA-XU-A933-01 14 105939835 105939835 A C CRIP2 Missense_Mutation p.Q84P 0.39 tolerated(0.29) benign(0) TCGA-XU-A933-01 14 20009989 20009989 G A POTEM Intron 0.19 TCGA-XU-A933-01 14 21868216 21868216 C - CHD8 Frame_Shift_Del p.V1581Yfs*7 0.32 TCGA-XU-A933-01 14 31765265 31765265 A G RP11-596D21.1 Intron 0.28 TCGA-XU-A933-01 15 25971102 25971102 T G ATP10A Silent p.A325A 0.27 TCGA-XU-A933-01 15 65621151 65621151 C A IGDCC3 3'UTR 0.29 TCGA-XU-A933-01 15 85405949 85405949 C T ALPK3 Nonsense_Mutation p.R1607* 0.32 TCGA-XU-A933-01 16 50357576 50357576 A C BRD7 Nonsense_Mutation p.Y455* 0.52 TCGA-XU-A933-01 17 26851036 26851036 A G FOXN1 Missense_Mutation p.T17A 0.20 tolerated_low_confidence(0.23) benign(0) TCGA-XU-A933-01 17 38610284 38610284 C T IGFBP4 Silent p.C204C 0.09 TCGA-XU-A933-01 17 58289456 58289456 C T USP32 Missense_Mutation p.R703H 0.07 deleterious(0.01) probably_damaging(0.984) TCGA-XU-A933-01 17 74273351 74273351 G - QRICH2 Frame_Shift_Del p.R1554Gfs*35 0.20 TCGA-XU-A933-01 17 76455961 76455961 C T DNAH17 Silent p.A3172A 0.15 TCGA-XU-A933-01 17 78182112 78182112 A G CARD14 Missense_Mutation p.K995E 0.32 deleterious(0) benign(0.437) TCGA-XU-A933-01 19 2110153 2110153 G C AP3D1 Silent p.T1082T 0.20 TCGA-XU-A933-01 19 9016675 9016675 G T MUC16 Missense_Mutation p.L12688I 0.35 benign(0.262) TCGA-XU-A933-01 1 12082378 12082378 C T MIIP Missense_Mutation p.A114V 0.10 tolerated(0.27) benign(0.124) TCGA-XU-A933-01 1 145281625 145281625 C G NOTCH2NL Silent p.P185P 0.12 TCGA-XU-A933-01 1 154231503 154231503 A C UBAP2L Silent p.P831P 0.29 TCGA-XU-A933-01 1 190449665 190449665 T C BRINP3 5'Flank 0.38 TCGA-XU-A933-01 1 192548271 192548271 A G RGS1 Missense_Mutation p.N150S 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-XU-A933-01 1 224345187 224345220 TTCTGAGCTTCGCACCAAAGTGCAAGAACAGCAA - FBXO28 Frame_Shift_Del p.S283Nfs*11 0.29 TCGA-XU-A933-01 1 229478671 229478671 G A CCSAP 5'UTR 0.33 TCGA-XU-A933-01 1 248059455 248059455 C T OR2W3 Silent p.C189C 0.24 TCGA-XU-A933-01 1 249150732 249150732 G T ZNF692 Missense_Mutation p.Q174K 0.29 tolerated(0.4) benign(0.055) TCGA-XU-A933-01 1 61548446 61548446 C A NFIA Missense_Mutation p.P40T 0.25 tolerated_low_confidence(0.08) unknown(0) TCGA-XU-A933-01 20 42331285 42331285 C T MYBL2 Silent p.T369T 0.30 TCGA-XU-A933-01 20 55028090 55028090 G A CASS4 Missense_Mutation p.E620K 0.35 deleterious(0.02) benign(0.42) TCGA-XU-A933-01 20 55028092 55028092 A T CASS4 Missense_Mutation p.E620D 0.35 tolerated(0.4) benign(0.05) TCGA-XU-A933-01 22 31677937 31677937 G A PIK3IP1 3'UTR 0.73 TCGA-XU-A933-01 2 10584662 10584662 C A ODC1 Missense_Mutation p.D72Y 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-XU-A933-01 2 110303058 110303058 C T SEPT10 Intron 0.06 TCGA-XU-A933-01 2 166868749 166868749 G A SCN1A Missense_Mutation p.T1250M 0.26 deleterious(0.04) benign(0.255) TCGA-XU-A933-01 2 179560833 179560833 G A TTN Silent p.D10322D 0.21 TCGA-XU-A933-01 2 197182045 197182045 C T HECW2 Missense_Mutation p.R796H 0.31 deleterious(0.04) benign(0.011) TCGA-XU-A933-01 2 220331922 220331922 G A SPEG Missense_Mutation p.V970M 0.60 probably_damaging(0.995) TCGA-XU-A933-01 2 23919269 23919270 - CCTCGTCT KLHL29 Frame_Shift_Ins p.R668Sfs*5 0.31 TCGA-XU-A933-01 2 25353483 25353483 T G EFR3B Missense_Mutation p.I278S 0.13 deleterious(0) probably_damaging(0.999) TCGA-XU-A933-01 2 68753274 68753274 A G APLF Missense_Mutation p.Q235R 0.34 tolerated(1) benign(0) TCGA-XU-A933-01 3 129810213 129810213 C T RP11-93K22.13 Intron 0.26 TCGA-XU-A933-01 3 22424272 22424272 T C HMGB1P5 RNA 0.11 TCGA-XU-A933-01 3 37095098 37095098 G A LRRFIP2 3'UTR 0.42 TCGA-XU-A933-01 4 2931517 2931517 G A ADD1 3'UTR 0.30 TCGA-XU-A933-01 4 36069439 36069439 T A ARAP2 3'UTR 0.20 TCGA-XU-A933-01 4 36069440 36069440 G A ARAP2 3'UTR 0.20 TCGA-XU-A933-01 4 55593610 55593610 T G KIT Missense_Mutation p.V559G 0.32 deleterious(0) probably_damaging(0.999) TCGA-XU-A933-01 4 77996637 77996637 T C CCNI 5'UTR 0.25 TCGA-XU-A933-01 5 11385097 11385112 GCCGAGCCGCCGCGCT - CTNND2 Frame_Shift_Del p.Q281Pfs*46 0.29 TCGA-XU-A933-01 5 90059169 90059169 G C GPR98 Silent p.V4056V 0.29 TCGA-XU-A933-01 6 133095445 133095445 C T SLC18B1 Missense_Mutation p.R302K 0.28 tolerated(0.08) possibly_damaging(0.9) TCGA-XU-A933-01 6 138753278 138753278 C T NHSL1 Missense_Mutation p.R739H 0.24 deleterious(0) probably_damaging(0.999) TCGA-XU-A933-01 7 134331672 134331672 C G BPGM 5'UTR 0.30 TCGA-XU-A933-01 8 67790820 67790820 A G MCMDC2 Missense_Mutation p.I165V 0.32 tolerated(0.14) benign(0.009) TCGA-XU-A933-01 8 99169924 99169924 G A POP1 Missense_Mutation p.G834S 0.30 tolerated(0.77) benign(0.006) TCGA-XU-A933-01 X 100911457 100911457 C T ARMCX2 Missense_Mutation p.R373H 0.38 deleterious(0.01) possibly_damaging(0.701) TCGA-XU-A933-01 X 10427745 10427745 A G MID1 Missense_Mutation p.V463A 0.24 deleterious(0) probably_damaging(1) TCGA-XU-A933-01 X 148564527 148564527 C T IDS Missense_Mutation p.R257Q 0.35 deleterious(0) probably_damaging(1) TCGA-XU-A933-01 X 55250482 55250482 T A PAGE5 3'UTR 0.34 TCGA-XU-A933-01 X 79700258 79700258 C T FAM46D 3'UTR 0.39 TCGA-XU-A936-01 11 108028874 108028874 T - NPAT 3'UTR 0.19 TCGA-XU-A936-01 11 123755310 123755310 G A TMEM225 Missense_Mutation p.S72L 0.36 tolerated(1) possibly_damaging(0.857) TCGA-XU-A936-01 11 1491433 1491433 G A MOB2 Missense_Mutation p.P259L 0.11 deleterious_low_confidence(0.02) benign(0.01) TCGA-XU-A936-01 11 2154871 2154871 C T IGF2 Missense_Mutation p.R117H 0.19 deleterious(0) benign(0.046) TCGA-XU-A936-01 11 62462143 62462143 A C BSCL2 Missense_Mutation p.L176R 0.38 deleterious(0) probably_damaging(0.999) TCGA-XU-A936-01 11 63365595 63365595 G A PLA2G16 Missense_Mutation p.P19L 0.12 tolerated(0.66) benign(0.011) TCGA-XU-A936-01 11 63742168 63742168 C T AP000721.4 Missense_Mutation p.P6S 0.15 deleterious_low_confidence(0.03) probably_damaging(0.974) TCGA-XU-A936-01 12 102302108 102302108 A T DRAM1 Missense_Mutation p.I163F 0.15 tolerated(0.17) benign(0.175) TCGA-XU-A936-01 12 125549956 125549956 C T AACS 5'UTR 0.64 TCGA-XU-A936-01 14 72117205 72117205 C T SIPA1L1 Nonsense_Mutation p.R658* 0.09 TCGA-XU-A936-01 15 58888825 58888825 T C ADAM10 3'UTR 0.21 TCGA-XU-A936-01 16 11772108 11772108 G T SNN 3'UTR 0.21 TCGA-XU-A936-01 16 11772109 11772109 A T SNN 3'UTR 0.22 TCGA-XU-A936-01 17 27004811 27004811 G C SUPT6H Missense_Mutation p.A326P 0.18 tolerated(0.09) benign(0.222) TCGA-XU-A936-01 17 58026789 58026790 - T RPS6KB1 3'UTR 0.09 TCGA-XU-A936-01 17 6909880 6909880 G A ALOX12 Nonsense_Mutation p.W498* 0.14 TCGA-XU-A936-01 17 7810746 7810746 C T CHD3 Missense_Mutation p.P1681S 0.30 possibly_damaging(0.641) TCGA-XU-A936-01 19 42558037 42558037 T C GRIK5 Silent p.K367K 0.14 TCGA-XU-A936-01 19 52521687 52521687 C A ZNF614 Missense_Mutation p.D26Y 0.10 deleterious(0.04) possibly_damaging(0.601) TCGA-XU-A936-01 1 110603472 110603472 G - ALX3 Frame_Shift_Del p.T306Pfs*25 0.08 TCGA-XU-A936-01 1 155149536 155149536 C G TRIM46 Silent p.A266A 0.26 TCGA-XU-A936-01 1 176992587 176992587 G A ASTN1 Missense_Mutation p.A464V 0.14 deleterious(0) possibly_damaging(0.745) TCGA-XU-A936-01 1 185191111 185191111 G A SWT1 Missense_Mutation p.R751K 0.12 tolerated(0.07) probably_damaging(0.996) TCGA-XU-A936-01 1 228466566 228466566 C T OBSCN Silent p.L2775L 0.15 TCGA-XU-A936-01 1 228556084 228556084 G A OBSCN Silent p.L7535L 0.09 TCGA-XU-A936-01 1 6638782 6638782 G A TAS1R1 Missense_Mutation p.R555H 0.27 deleterious(0) probably_damaging(0.987) TCGA-XU-A936-01 1 7903060 7903060 G A PER3 3'UTR 0.09 TCGA-XU-A936-01 2 70106219 70106219 G C GMCL1 3'UTR 0.14 TCGA-XU-A936-01 3 113497642 113497642 A G ATP6V1A Silent p.K14K 0.29 TCGA-XU-A936-01 3 120500500 120500500 G T GTF2E1 3'UTR 0.17 TCGA-XU-A936-01 3 52383331 52383331 C T DNAH1 Silent p.Y807Y 0.20 TCGA-XU-A936-01 4 100478534 100478534 C T TRMT10A Missense_Mutation p.A130T 0.09 tolerated(0.15) possibly_damaging(0.737) TCGA-XU-A936-01 4 77317601 77317601 T C CCDC158 Missense_Mutation p.T37A 0.08 tolerated(0.21) benign(0.003) TCGA-XU-A936-01 4 95200079 95200080 - A SMARCAD1 Frame_Shift_Ins p.N770Kfs*28 0.17 TCGA-XU-A936-01 5 130815362 130815362 C A RAPGEF6 Missense_Mutation p.R642L 0.17 tolerated(0.06) probably_damaging(0.998) TCGA-XU-A936-01 5 140736822 140736822 C T PCDHGA4 Silent p.D685D 0.11 TCGA-XU-A936-01 5 37065720 37065720 T A NIPBL 3'UTR 0.12 TCGA-XU-A936-01 6 32029977 32029977 G A TNXB Silent p.H2375H 0.15 TCGA-XU-A936-01 8 100115327 100115327 C T VPS13B Missense_Mutation p.R187C 0.13 deleterious(0) possibly_damaging(0.876) TCGA-XU-A936-01 9 14720321 14720321 C T CER1 Missense_Mutation p.G191R 0.12 tolerated(0.11) benign(0.136) TCGA-XU-A936-01 X 153296828 153296828 C T MECP2 Missense_Mutation p.D163N 0.14 deleterious(0.04) probably_damaging(0.995) TCGA-XU-A936-01 X 26157669 26157669 T A MAGEB18 Missense_Mutation p.S189R 0.08 tolerated(0.36) benign(0.033) TCGA-XU-A936-01 X 47495756 47495756 A G ELK1 3'UTR 0.09 TCGA-XU-AAXW-01 11 133792609 133792609 C T IGSF9B Silent p.P712P 0.05 TCGA-XU-AAXW-01 11 57099682 57099682 G A SSRP1 Silent p.S315S 0.22 TCGA-XU-AAXW-01 12 123944421 123944421 G T SNRNP35 5'UTR 0.17 TCGA-XU-AAXW-01 19 11332919 11332919 G T DOCK6 Silent p.S1082S 0.17 TCGA-XU-AAXW-01 19 40009417 40009417 C T SELV Missense_Mutation p.P291L 0.08 deleterious(0) probably_damaging(0.977) TCGA-XU-AAXW-01 19 49714887 49714887 G T TRPM4 3'UTR 0.31 TCGA-XU-AAXW-01 4 57796894 57796894 G T REST Missense_Mutation p.G624W 0.27 deleterious(0) possibly_damaging(0.72) TCGA-XU-AAXW-01 9 8521488 8521488 G A PTPRD Silent p.G250G 0.08 TCGA-XU-AAXW-01 X 3229505 3229505 G T MXRA5 Missense_Mutation p.H2247N 0.25 tolerated(0.19) benign(0.098) TCGA-XU-AAXX-01 11 64533112 64533112 C T SF1 Intron 0.20 TCGA-XU-AAXX-01 14 22564345 22564345 C T TRDV1 Silent p.L7L 0.15 TCGA-XU-AAXX-01 14 60474877 60474877 G A LRRC9 Missense_Mutation p.R1044Q 0.05 deleterious(0) probably_damaging(0.956) TCGA-XU-AAXX-01 15 102299771 102299771 C A DNM1P47 RNA 0.21 TCGA-XU-AAXX-01 16 27374668 27374668 G A IL4R Silent p.P665P 0.09 TCGA-XU-AAXX-01 16 727043 727043 A C RHBDL1 Missense_Mutation p.K232Q 0.12 tolerated(0.05) benign(0.154) TCGA-XU-AAXX-01 17 3957410 3957410 C T ZZEF1 Nonsense_Mutation p.W1792* 0.12 TCGA-XU-AAXX-01 17 74287536 74287536 G T QRICH2 Missense_Mutation p.P925Q 0.15 deleterious(0) probably_damaging(0.964) TCGA-XU-AAXX-01 19 13251638 13251638 C - NACC1 3'UTR 0.09 TCGA-XU-AAXX-01 1 59249505 59249505 C T JUN 5'UTR 0.13 TCGA-XU-AAXX-01 3 128181539 128181539 A C DNAJB8 Missense_Mutation p.S184A 0.33 deleterious(0.03) benign(0.137) TCGA-XU-AAXX-01 3 53905263 53905263 G A ACTR8 Silent p.C521C 0.21 TCGA-XU-AAXX-01 6 10749862 10749862 T G TMEM14B Missense_Mutation p.L11V 0.05 tolerated(0.64) benign(0.05) TCGA-XU-AAXY-01 11 66051458 66051458 G - CNIH2 3'UTR 0.13 TCGA-XU-AAXY-01 13 25281292 25281292 C T ATP12A Silent p.D773D 0.12 TCGA-XU-AAXY-01 14 23762782 23762782 G A PPP1R3E 3'Flank 0.12 TCGA-XU-AAXY-01 14 67859128 67859128 T C PLEK2 Missense_Mutation p.K229R 0.06 tolerated(0.24) benign(0.001) TCGA-XU-AAXY-01 17 40961632 40961632 G T CNTD1 3'UTR 0.16 TCGA-XU-AAXY-01 6 73111870 73111870 T A RIMS1 3'Flank 0.12 TCGA-XU-AAXY-01 7 146805383 146805383 A T CNTNAP2 Missense_Mutation p.Q232L 0.06 deleterious(0.05) benign(0.216) TCGA-XU-AAXZ-01 11 93097356 93097357 - G CCDC67 Frame_Shift_Ins p.L110Rfs*20 0.10 TCGA-XU-AAXZ-01 12 109623399 109623399 C T ACACB Missense_Mutation p.P612S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-XU-AAXZ-01 15 34356696 34356696 C G CHRM5 3'UTR 0.10 TCGA-XU-AAXZ-01 15 84868219 84868219 A G GOLGA2P7 RNA 0.25 TCGA-XU-AAXZ-01 17 43514332 43514332 G T PLEKHM1 3'UTR 0.20 TCGA-XU-AAXZ-01 17 44096082 44096082 G A MAPT Missense_Mutation p.G701R 0.09 deleterious(0) possibly_damaging(0.888) TCGA-XU-AAXZ-01 18 51729357 51729357 T C MBD2 Intron 0.35 TCGA-XU-AAXZ-01 18 5290786 5290786 G A ZBTB14 3'UTR 0.25 TCGA-XU-AAXZ-01 19 5685085 5685085 C T HSD11B1L Silent p.G53G 0.15 TCGA-XU-AAXZ-01 3 184298647 184298647 G T EPHB3 Missense_Mutation p.W840L 0.17 deleterious(0) probably_damaging(1) TCGA-XU-AAXZ-01 4 48906563 48906563 C G OCIAD2 Missense_Mutation p.A2P 0.10 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-XU-AAXZ-01 5 34811968 34811968 A G RAI14 Silent p.G221G 0.09 TCGA-XU-AAXZ-01 5 56179432 56179432 A G MAP3K1 Missense_Mutation p.I1249V 0.11 deleterious(0.05) benign(0.085) TCGA-XU-AAY0-01 10 30317392 30317392 T C KIAA1462 Missense_Mutation p.Q562R 0.17 deleterious(0) benign(0.002) TCGA-XU-AAY0-01 11 12380639 12380639 T C MICALCL 3'UTR 0.12 TCGA-XU-AAY0-01 11 710430 710430 A G EPS8L2 Missense_Mutation p.K37E 0.22 deleterious(0) probably_damaging(0.999) TCGA-XU-AAY0-01 11 74546822 74546822 C A RNF169 Missense_Mutation p.P392T 0.17 deleterious(0) probably_damaging(0.999) TCGA-XU-AAY0-01 12 50871776 50871776 A G LARP4 3'UTR 0.20 TCGA-XU-AAY0-01 12 81503382 81503382 C T ACSS3 Missense_Mutation p.R119C 0.15 deleterious(0) probably_damaging(1) TCGA-XU-AAY0-01 15 102295714 102295714 T C DNM1P47 RNA 0.24 TCGA-XU-AAY0-01 15 26789481 26789481 C A GABRB3 3'UTR 0.15 TCGA-XU-AAY0-01 18 32468492 32468493 - T DTNA Intron 0.15 TCGA-XU-AAY0-01 1 16812131 16812131 C T CROCCP3 RNA 0.15 TCGA-XU-AAY0-01 1 17318550 17318550 G A ATP13A2 Missense_Mutation p.P694S 0.29 tolerated(0.17) benign(0.018) TCGA-XU-AAY0-01 20 31376709 31376709 G A DNMT3B Missense_Mutation p.G235D 0.08 deleterious(0.01) possibly_damaging(0.711) TCGA-XU-AAY0-01 2 50850457 50850457 G A NRXN1 Missense_Mutation p.R410C 0.17 deleterious(0) probably_damaging(0.997) TCGA-XU-AAY0-01 3 57913274 57913274 T C SLMAP 3'UTR 0.10 TCGA-XU-AAY0-01 6 138658375 138658375 G A KIAA1244 3'UTR 0.22 TCGA-XU-AAY0-01 6 7248913 7248913 C T RREB1 Silent p.S1647S 0.16 TCGA-XU-AAY0-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.09 deleterious(0.05) probably_damaging(0.992) TCGA-XU-AAY0-01 8 134271450 134271450 T A NDRG1 Missense_Mutation p.Q117L 0.12 deleterious(0.01) benign(0.111) TCGA-XU-AAY0-01 8 74706060 74706060 A T UBE2W 3'UTR 0.10 TCGA-XU-AAY0-01 9 117124803 117124803 C T AKNA Missense_Mutation p.R600Q 0.11 tolerated(0.51) benign(0.041) TCGA-XU-AAY0-01 9 139902075 139902075 G A ABCA2 3'UTR 0.22 TCGA-XU-AAY0-01 9 26841547 26841547 A T CAAP1 3'UTR 0.05 TCGA-XU-AAY0-01 9 84267173 84267173 G A TLE1 Missense_Mutation p.R110C 0.12 deleterious(0) benign(0.077) TCGA-XU-AAY0-01 X 135582344 135582344 A G HTATSF1 Missense_Mutation p.N132S 0.09 deleterious(0.01) possibly_damaging(0.841) TCGA-XU-AAY1-01 10 123847268 123847268 C T TACC2 Silent p.C1751C 0.12 TCGA-XU-AAY1-01 16 15781251 15781251 G A NDE1 Missense_Mutation p.E136K 0.17 deleterious(0) possibly_damaging(0.774) TCGA-XU-AAY1-01 17 48145646 48145646 C - ITGA3 Frame_Shift_Del p.G216Vfs*11 0.12 TCGA-XU-AAY1-01 1 245017533 245017533 C T HNRNPU 3'UTR 0.10 TCGA-XU-AAY1-01 3 75470995 75470995 T A FAM86DP RNA 0.53 TCGA-XU-AAY1-01 3 75470996 75470996 G T FAM86DP RNA 0.50 TCGA-XU-AAY1-01 4 122853995 122853995 C T TRPC3 Missense_Mutation p.V140I 0.27 tolerated(0.38) benign(0.376) TCGA-XU-AAY1-01 5 76372951 76372951 G A ZBED3 3'UTR 0.09 TCGA-XU-AAY1-01 5 79089384 79089384 C T CMYA5 Silent p.L3972L 0.20 TCGA-XU-AAY1-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.05 deleterious(0.05) probably_damaging(0.992) TCGA-XU-AAY1-01 8 145578339 145578339 C T TMEM249 Missense_Mutation p.R30H 0.17 deleterious(0) probably_damaging(0.999) TCGA-XU-AAY1-01 X 128896687 128896687 G T XPNPEP2 Missense_Mutation p.D561Y 0.27 deleterious(0) probably_damaging(0.923) TCGA-XU-AAY1-01 X 73749216 73749216 G T SLC16A2 Missense_Mutation p.A447S 0.24 deleterious(0) probably_damaging(0.999) TCGA-YT-A95D-01 10 1045028 1045028 G A GTPBP4 Missense_Mutation p.R216H 0.28 deleterious(0) probably_damaging(0.999) TCGA-YT-A95D-01 12 32908584 32908584 G A YARS2 Silent p.T75T 0.38 TCGA-YT-A95D-01 12 53242534 53242536 TAC AA KRT78 Frame_Shift_Del p.G60Vfs*27 0.51 TCGA-YT-A95D-01 12 70928654 70928654 C T PTPRB Missense_Mutation p.V2055I 0.24 deleterious(0) possibly_damaging(0.883) TCGA-YT-A95D-01 13 115090463 115090463 T C CHAMP1 Silent p.S382S 0.09 TCGA-YT-A95D-01 17 76161924 76161924 C T C17orf99 Intron 0.25 TCGA-YT-A95D-01 18 77894462 77894462 T C ADNP2 Missense_Mutation p.V389A 0.05 tolerated(0.37) benign(0.157) TCGA-YT-A95D-01 19 50762522 50762522 G A MYH14 Missense_Mutation p.R785Q 0.09 deleterious(0) probably_damaging(0.993) TCGA-YT-A95D-01 1 11316055 11316055 C A MTOR Missense_Mutation p.W233C 0.11 deleterious(0.05) probably_damaging(0.956) TCGA-YT-A95D-01 1 20216922 20216923 - A OTUD3 Frame_Shift_Ins p.R90Tfs*22 0.26 TCGA-YT-A95D-01 1 237777439 237777439 C T RYR2 Missense_Mutation p.R1671W 0.07 probably_damaging(0.999) TCGA-YT-A95D-01 20 30154053 30154053 C T HM13 Missense_Mutation p.P330L 0.12 deleterious(0.01) benign(0.198) TCGA-YT-A95D-01 2 152497131 152497131 G A NEB Missense_Mutation p.A2808V 0.32 probably_damaging(0.967) TCGA-YT-A95D-01 2 179515498 179515498 G T TTN Missense_Mutation p.A13230E 0.47 TCGA-YT-A95D-01 4 139979170 139979171 - A ELF2 3'UTR 0.09 TCGA-YT-A95D-01 5 146773233 146773233 G A DPYSL3 3'UTR 0.37 TCGA-YT-A95D-01 6 40400316 40400316 G C LRFN2 Missense_Mutation p.S179R 0.30 deleterious(0) probably_damaging(0.988) TCGA-YT-A95D-01 6 57012978 57012979 - A ZNF451 Frame_Shift_Ins p.T701Nfs*2 0.23 TCGA-YT-A95D-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.31 deleterious(0.05) probably_damaging(0.992) TCGA-YT-A95D-01 8 57079034 57079034 A C PLAG1 Missense_Mutation p.F424C 0.33 deleterious(0) probably_damaging(0.971) TCGA-YT-A95D-01 8 67579396 67579396 C T VCPIP1 5'UTR 0.12 TCGA-YT-A95D-01 9 130149490 130149490 G A GARNL3 Missense_Mutation p.A803T 0.15 tolerated(0.82) possibly_damaging(0.556) TCGA-YT-A95D-01 X 102348013 102348013 T C NXF3 5'UTR 0.48 TCGA-YT-A95D-01 X 103495117 103495117 C G ESX1 Missense_Mutation p.R338P 0.15 tolerated_low_confidence(0.32) unknown(0) TCGA-YT-A95D-01 X 128692701 128692701 C A OCRL Silent p.P177P 0.43 TCGA-YT-A95D-01 X 153741210 153741210 C T FAM3A Missense_Mutation p.V22M 0.29 tolerated(0.08) benign(0.012) TCGA-YT-A95D-01 X 46740921 46740921 A T RP2 3'UTR 0.06 TCGA-YT-A95D-01 X 78012240 78012240 G A LPAR4 3'UTR 0.14 TCGA-YT-A95D-01 X 78012241 78012241 C G LPAR4 3'UTR 0.14 TCGA-YT-A95E-01 12 106799755 106799755 G C POLR3B Splice_Site p.X322_splice 0.05 TCGA-YT-A95E-01 15 54007530 54007530 C T WDR72 Missense_Mutation p.G125D 0.10 deleterious(0) probably_damaging(1) TCGA-YT-A95E-01 16 3707065 3707065 G T DNASE1 Missense_Mutation p.A168S 0.17 tolerated(0.12) benign(0.117) TCGA-YT-A95E-01 16 89696827 89696827 C T DPEP1 Silent p.S3S 0.09 TCGA-YT-A95E-01 17 40318361 40318361 G A KCNH4 Silent p.S598S 0.15 TCGA-YT-A95E-01 17 40322135 40322135 C A KCNH4 Missense_Mutation p.M460I 0.15 deleterious(0) probably_damaging(0.976) TCGA-YT-A95E-01 19 3771692 3771692 C T RAX2 Missense_Mutation p.G17R 0.06 tolerated(0.26) benign(0) TCGA-YT-A95E-01 19 541481 541481 G C CDC34 Missense_Mutation p.G214R 0.06 tolerated(0.29) possibly_damaging(0.454) TCGA-YT-A95E-01 19 8122791 8122791 A G CCL25 Missense_Mutation p.I144M 0.12 tolerated(0.07) benign(0.041) TCGA-YT-A95E-01 1 220836413 220836413 A G MARK1 3'Flank 0.05 TCGA-YT-A95E-01 20 33300072 33300072 A G TP53INP2 3'UTR 0.06 TCGA-YT-A95E-01 20 62191616 62191616 G A HELZ2 Missense_Mutation p.T2522M 0.13 deleterious(0) probably_damaging(1) TCGA-YT-A95E-01 22 36745152 36745152 C T MYH9 Missense_Mutation p.A44T 0.10 probably_damaging(0.913) TCGA-YT-A95E-01 22 38880200 38880200 A C DDX17 3'UTR 0.08 TCGA-YT-A95E-01 2 26359306 26359306 A G RAB10 3'UTR 0.12 TCGA-YT-A95E-01 3 147124352 147124352 C G ZIC4 5'Flank 0.05 TCGA-YT-A95E-01 7 5112706 5112706 G C RBAK-RBAKDN 3'UTR 0.19 TCGA-YT-A95E-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.07 deleterious(0.05) probably_damaging(0.992) TCGA-YT-A95F-01 10 25304802 25304802 G A ENKUR Missense_Mutation p.P22S 0.24 tolerated(0.6) benign(0.007) TCGA-YT-A95F-01 11 61100455 61100455 C T DDB1 5'UTR 0.05 TCGA-YT-A95F-01 11 62559355 62559355 C G TMEM223 Missense_Mutation p.E38Q 0.17 tolerated(0.27) benign(0.011) TCGA-YT-A95F-01 12 100691878 100691878 T C SCYL2 Silent p.N135N 0.11 TCGA-YT-A95F-01 12 394446 394446 T C KDM5A 3'UTR 0.27 TCGA-YT-A95F-01 14 77746787 77746787 G T POMT2 Missense_Mutation p.P558H 0.27 deleterious(0) probably_damaging(0.98) TCGA-YT-A95F-01 15 43237464 43237464 A G UBR1 3'UTR 0.24 TCGA-YT-A95F-01 16 15737165 15737165 C T NDE1 5'UTR 0.13 TCGA-YT-A95F-01 16 24231220 24231220 G A PRKCB 3'UTR 0.18 TCGA-YT-A95F-01 16 50344694 50344694 G T ADCY7 Missense_Mutation p.V753L 0.27 deleterious(0.04) benign(0.073) TCGA-YT-A95F-01 16 88902215 88902215 A G GALNS Missense_Mutation p.F226L 0.15 deleterious(0.03) benign(0.434) TCGA-YT-A95F-01 17 17707144 17707144 C A RAI1 Nonsense_Mutation p.Y1880* 0.10 TCGA-YT-A95F-01 18 55342233 55342233 G A ATP8B1 Missense_Mutation p.A551V 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-YT-A95F-01 19 45924558 45924558 G A ERCC1 Nonsense_Mutation p.Q67* 0.19 TCGA-YT-A95F-01 1 109513919 109513919 A G WDR47 3'UTR 0.09 TCGA-YT-A95F-01 1 156640813 156640813 G A NES Missense_Mutation p.P1056L 0.22 tolerated(0.16) benign(0.023) TCGA-YT-A95F-01 1 28167566 28167566 A G PPP1R8 Missense_Mutation p.K105E 0.07 deleterious(0) possibly_damaging(0.823) TCGA-YT-A95F-01 20 47244089 47244089 G T PREX1 Missense_Mutation p.P1645Q 0.20 deleterious(0) possibly_damaging(0.908) TCGA-YT-A95F-01 21 47404186 47404186 C A COL6A1 Nonsense_Mutation p.Y77* 0.14 TCGA-YT-A95F-01 2 1263192 1263192 G T SNTG2 Missense_Mutation p.E352D 0.21 deleterious(0.03) probably_damaging(0.938) TCGA-YT-A95F-01 4 108968754 108968754 C G LEF1 3'UTR 0.33 TCGA-YT-A95F-01 4 122741779 122741779 A G CCNA2 Missense_Mutation p.Y238H 0.08 deleterious(0) probably_damaging(0.999) TCGA-YT-A95F-01 4 89574188 89574188 T - HERC3 Frame_Shift_Del p.F212Lfs*5 0.14 TCGA-YT-A95F-01 5 131006239 131006239 C T FNIP1 Missense_Mutation p.V1009M 0.24 tolerated(0.91) probably_damaging(0.999) TCGA-YT-A95F-01 5 176011642 176011642 G T CDHR2 Missense_Mutation p.G787V 0.24 tolerated(0.06) benign(0.082) TCGA-YT-A95F-01 5 178054013 178054013 G C CLK4 5'UTR 0.20 TCGA-YT-A95F-01 5 179041324 179041324 C T HNRNPH1 3'UTR 0.09 TCGA-YT-A95F-01 6 138726307 138726307 A G HEBP2 Missense_Mutation p.Y43C 0.19 deleterious(0.01) possibly_damaging(0.849) TCGA-YT-A95F-01 6 99848748 99848751 TTTG - PNISR Frame_Shift_Del p.Q695Kfs*16 0.11 TCGA-YT-A95F-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.16 deleterious(0.05) probably_damaging(0.992) TCGA-YT-A95F-01 9 113259212 113259212 G A SVEP1 Silent p.D561D 0.24 TCGA-YT-A95F-01 9 138586237 138586237 C T SOHLH1 Nonsense_Mutation p.W314* 0.12 TCGA-YT-A95F-01 X 106064109 106064109 G A TBC1D8B Missense_Mutation p.A82T 0.20 tolerated(0.12) benign(0.057) TCGA-YT-A95G-01 11 2185541 2185541 G A TH Silent p.P503P 0.18 TCGA-YT-A95G-01 12 109273721 109273721 T C DAO 5'Flank 0.14 TCGA-YT-A95G-01 12 23818447 23818447 G A SOX5 Missense_Mutation p.R288W 0.14 deleterious(0) probably_damaging(0.997) TCGA-YT-A95G-01 16 2809654 2809654 C A SRRM2 Silent p.S275S 0.15 TCGA-YT-A95G-01 16 29819034 29819034 C T MAZ Missense_Mutation p.P310S 0.10 deleterious(0.03) benign(0.014) TCGA-YT-A95G-01 17 41599413 41599413 A G DHX8 Splice_Site p.X1088_splice 0.18 TCGA-YT-A95G-01 18 74962700 74962700 C T GALR1 Missense_Mutation p.P66S 0.18 tolerated(0.47) benign(0.026) TCGA-YT-A95G-01 19 36004265 36004265 G T DMKN Missense_Mutation p.A38D 0.20 deleterious(0) probably_damaging(0.994) TCGA-YT-A95G-01 19 8809132 8809132 G T ACTL9 5'UTR 0.19 TCGA-YT-A95G-01 2 131127696 131127696 C T PTPN18 Missense_Mutation p.L208F 0.47 deleterious(0) probably_damaging(1) TCGA-YT-A95G-01 2 180014108 180014108 A C SESTD1 Missense_Mutation p.F166C 0.05 deleterious(0) probably_damaging(0.974) TCGA-YT-A95G-01 3 197444866 197444866 G T KIAA0226 Missense_Mutation p.H67Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-YT-A95G-01 3 197894714 197894714 G C FAM157A RNA 0.05 TCGA-YT-A95G-01 4 73923991 73923991 T C COX18 Missense_Mutation p.Y281C 0.08 deleterious(0) probably_damaging(0.997) TCGA-YT-A95G-01 7 21723504 21723504 T C DNAH11 Missense_Mutation p.Y1862H 0.09 probably_damaging(0.994) TCGA-YT-A95G-01 7 5104287 5104287 T G RBAK Silent p.L400L 0.13 TCGA-YT-A95G-01 8 144921273 144921273 C T NRBP2 Splice_Site p.X202_splice 0.12 TCGA-YT-A95G-01 8 95272612 95272612 G T GEM Nonsense_Mutation p.Y40* 0.19 TCGA-YT-A95G-01 X 148080072 148080072 A G AFF2 3'UTR 0.06 TCGA-YT-A95H-01 10 51225554 51225554 A G AGAP8 Silent p.C476C 0.09 TCGA-YT-A95H-01 11 3844860 3844860 G T PGAP2 Intron 0.31 TCGA-YT-A95H-01 16 15694313 15694313 C T KIAA0430 Silent p.S1595S 0.15 TCGA-YT-A95H-01 17 1638874 1638874 C T WDR81 Missense_Mutation p.L1730F 0.06 deleterious(0.01) benign(0.339) TCGA-YT-A95H-01 19 40901939 40901939 C T PRX Missense_Mutation p.V774M 0.24 tolerated(0.13) possibly_damaging(0.781) TCGA-YT-A95H-01 19 55386792 55386793 - C FCAR Frame_Shift_Ins p.L15Sfs*40 0.10 TCGA-YT-A95H-01 19 7116383 7116383 T C INSR 3'Flank 0.25 TCGA-YT-A95H-01 22 20977047 20977047 G A SMPD4P1 RNA 0.09 TCGA-YT-A95H-01 2 107049715 107049715 T C RGPD3 Silent p.K744K 0.04 TCGA-YT-A95H-01 2 112686796 112686796 C T MERTK Missense_Mutation p.P54L 0.04 deleterious_low_confidence(0) benign(0.004) TCGA-YT-A95H-01 2 99779570 99779570 C T LIPT1 3'UTR 0.08 TCGA-YT-A95H-01 3 100354567 100354567 A G GPR128 Missense_Mutation p.Q165R 0.06 tolerated(0.07) benign(0.037) TCGA-YT-A95H-01 3 171320631 171320631 C T PLD1 3'UTR 0.10 TCGA-YT-A95H-01 3 42265314 42265314 C T TRAK1 3'UTR 0.27 TCGA-YT-A95H-01 4 72399978 72399978 C T SLC4A4 Missense_Mutation p.P772L 0.07 deleterious(0.03) possibly_damaging(0.573) TCGA-YT-A95H-01 5 179020552 179020552 A G RUFY1 Missense_Mutation p.K440R 0.05 deleterious(0) probably_damaging(0.987) TCGA-YT-A95H-01 6 147109643 147109643 C T ADGB Silent p.T1478T 0.07 TCGA-YT-A95H-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.03 deleterious(0.05) probably_damaging(0.992) TCGA-YT-A95H-01 8 103662514 103662514 G A KLF10 Missense_Mutation p.A430V 0.19 deleterious(0.02) benign(0.31) TCGA-YT-A95H-01 8 75761567 75761567 C A PI15 3'UTR 0.25 TCGA-YT-A95H-01 X 49346284 49346284 C A GAGE12H Missense_Mutation p.P38Q 0.04 tolerated(0.08) possibly_damaging(0.544) TCGA-ZB-A961-01 10 124545544 124545544 C A DMBT1P1 RNA 0.25 TCGA-ZB-A961-01 10 91470828 91470828 T A KIF20B Missense_Mutation p.Y201N 0.06 deleterious(0) probably_damaging(0.914) TCGA-ZB-A961-01 11 102198822 102198822 C A BIRC3 Silent p.I331I 0.35 TCGA-ZB-A961-01 12 123424797 123424797 G A ABCB9 Missense_Mutation p.T535M 0.12 deleterious(0.01) possibly_damaging(0.781) TCGA-ZB-A961-01 12 50188683 50188683 G T NCKAP5L Missense_Mutation p.A987D 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZB-A961-01 13 28155773 28155773 C T LNX2 Missense_Mutation p.C23Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZB-A961-01 15 42289438 42289438 G A PLA2G4E Missense_Mutation p.R332W 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZB-A961-01 15 73994736 73994736 C T CD276 Nonsense_Mutation p.Q74* 0.32 TCGA-ZB-A961-01 16 53260382 53260382 T G CHD9 Missense_Mutation p.N667K 0.26 benign(0.185) TCGA-ZB-A961-01 16 84215650 84215650 C T TAF1C Missense_Mutation p.V246I 0.17 tolerated(0.2) benign(0.01) TCGA-ZB-A961-01 17 7258940 7258940 C A TMEM95 Missense_Mutation p.H69N 0.19 deleterious(0.01) benign(0.216) TCGA-ZB-A961-01 17 73947523 73947523 A C ACOX1 Silent p.G360G 0.09 TCGA-ZB-A961-01 18 39575930 39575930 C A PIK3C3 Missense_Mutation p.P288H 0.28 deleterious(0) probably_damaging(1) TCGA-ZB-A961-01 19 52217207 52217207 C A HAS1 Nonsense_Mutation p.E404* 0.17 TCGA-ZB-A961-01 19 55250004 55250004 C T KIR2DL3 5'UTR 0.28 TCGA-ZB-A961-01 1 205739888 205739888 T C RAB7L1 Missense_Mutation p.E158G 0.46 deleterious(0) probably_damaging(0.986) TCGA-ZB-A961-01 1 78332037 78332037 T C FAM73A Silent p.S508S 0.19 TCGA-ZB-A961-01 20 36642126 36642126 C T TTI1 Silent p.E31E 0.12 TCGA-ZB-A961-01 21 46078206 46078206 C T KRTAP12-3 3'UTR 0.44 TCGA-ZB-A961-01 22 37602854 37602854 C T SSTR3 Missense_Mutation p.R330Q 0.22 tolerated(0.05) probably_damaging(0.997) TCGA-ZB-A961-01 22 42779924 42779924 C T NFAM1 3'UTR 0.26 TCGA-ZB-A961-01 2 166903446 166903446 A G SCN1A Missense_Mutation p.V404A 0.18 deleterious(0) probably_damaging(0.996) TCGA-ZB-A961-01 2 179742828 179742828 C G CCDC141 Missense_Mutation p.E588Q 0.23 tolerated(0.06) benign(0.136) TCGA-ZB-A961-01 2 228855819 228855819 C T SPHKAP Missense_Mutation p.C1619Y 0.35 tolerated(0.07) probably_damaging(0.987) TCGA-ZB-A961-01 2 30480360 30480360 T C LBH Missense_Mutation p.I64T 0.26 deleterious(0) probably_damaging(0.993) TCGA-ZB-A961-01 3 46477500 46477500 G T LTF 3'UTR 0.15 TCGA-ZB-A961-01 3 49967127 49967127 G C MON1A Missense_Mutation p.R65G 0.29 tolerated_low_confidence(0.5) benign(0) TCGA-ZB-A961-01 3 93595864 93595864 C G PROS1 Missense_Mutation p.V606L 0.26 tolerated(0.51) benign(0.026) TCGA-ZB-A961-01 3 9834593 9834593 C T TADA3 5'Flank 0.14 TCGA-ZB-A961-01 4 52883540 52883540 C G LRRC66 Silent p.T80T 0.25 TCGA-ZB-A961-01 5 132431935 132431935 A C HSPA4 Missense_Mutation p.E599A 0.44 deleterious(0.01) possibly_damaging(0.861) TCGA-ZB-A961-01 5 148207138 148207138 G T ADRB2 Silent p.V248V 0.15 TCGA-ZB-A961-01 6 147704089 147704089 G A STXBP5 Silent p.A1123A 0.10 TCGA-ZB-A961-01 7 107710324 107710324 G T LAMB4 Missense_Mutation p.L711I 0.15 deleterious(0.01) possibly_damaging(0.735) TCGA-ZB-A961-01 7 129297374 129297374 C A NRF1 Silent p.S61S 0.14 TCGA-ZB-A961-01 7 73803544 73803544 C G CLIP2 Missense_Mutation p.S892W 0.17 deleterious(0) probably_damaging(1) TCGA-ZB-A961-01 8 82593786 82593786 G C IMPA1 Missense_Mutation p.P63A 0.28 tolerated(0.08) benign(0.005) TCGA-ZB-A961-01 9 73736100 73736100 A T TRPM3 Silent p.L57L 0.33 TCGA-ZB-A961-01 X 100871268 100871268 C T ARMCX6 Missense_Mutation p.A115T 0.07 tolerated(0.28) benign(0.026) TCGA-ZB-A961-01 X 26157793 26157793 G A MAGEB18 Missense_Mutation p.D231N 0.50 deleterious(0.03) benign(0.021) TCGA-ZB-A962-01 10 83926565 83926565 C T NRG3 Intron 0.44 TCGA-ZB-A962-01 11 1090373 1090373 G A MUC2 Silent p.P1223P 0.47 TCGA-ZB-A962-01 11 534289 534289 C G HRAS Missense_Mutation p.G12R 0.33 deleterious(0.03) possibly_damaging(0.734) TCGA-ZB-A962-01 12 80722865 80722865 G T OTOGL Missense_Mutation p.M1429I 0.41 tolerated(0.46) benign(0) TCGA-ZB-A962-01 12 8073916 8073917 AG - SLC2A3 3'UTR 0.16 TCGA-ZB-A962-01 14 103570659 103570659 C A EXOC3L4 Missense_Mutation p.A406E 0.45 tolerated(0.88) benign(0.01) TCGA-ZB-A962-01 14 92055900 92055900 G C CATSPERB Missense_Mutation p.N978K 0.38 deleterious(0) probably_damaging(0.998) TCGA-ZB-A962-01 16 2983738 2983738 C T FLYWCH1 Missense_Mutation p.T423M 0.26 deleterious(0) possibly_damaging(0.897) TCGA-ZB-A962-01 16 4385179 4385179 G A GLIS2 Missense_Mutation p.R214Q 0.10 deleterious(0) probably_damaging(0.953) TCGA-ZB-A962-01 16 67298985 67298985 C T SLC9A5 Nonsense_Mutation p.R686* 0.33 TCGA-ZB-A962-01 16 89616931 89616931 A G SPG7 Missense_Mutation p.K565E 0.11 tolerated(0.5) benign(0.062) TCGA-ZB-A962-01 17 19480698 19480701 TCAG - SLC47A1 Frame_Shift_Del p.S517Ifs*38 0.33 TCGA-ZB-A962-01 17 25950788 25950788 G A KSR1 3'UTR 0.50 TCGA-ZB-A962-01 17 43884403 43884403 G A CRHR1 Missense_Mutation p.V21I 0.21 tolerated(0.45) benign(0.002) TCGA-ZB-A962-01 17 48211299 48211299 G C PPP1R9B 3'UTR 0.57 TCGA-ZB-A962-01 17 62496153 62496153 C T DDX5 Missense_Mutation p.G578E 0.33 deleterious_low_confidence(0.01) benign(0.384) TCGA-ZB-A962-01 17 77093467 77093467 G C RBFOX3 Missense_Mutation p.A221G 0.20 tolerated(0.05) possibly_damaging(0.601) TCGA-ZB-A962-01 17 80059494 80059494 G T FASN 5'Flank 0.21 TCGA-ZB-A962-01 18 47917597 47917597 T A SKA1 Missense_Mutation p.S185T 0.09 tolerated(0.17) possibly_damaging(0.491) TCGA-ZB-A962-01 19 48205846 48205846 G - GLTSCR1 3'UTR 0.11 TCGA-ZB-A962-01 19 56465979 56465979 C T NLRP8 Silent p.H185H 0.49 TCGA-ZB-A962-01 19 57646870 57646870 A G ZIM3 Missense_Mutation p.Y279H 0.20 deleterious(0.02) probably_damaging(0.991) TCGA-ZB-A962-01 1 204168258 204168258 C T GOLT1A Intron 0.70 TCGA-ZB-A962-01 1 27633954 27633954 C T WDTC1 3'UTR 0.25 TCGA-ZB-A962-01 20 35436960 35436960 G A SOGA1 Missense_Mutation p.R924W 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZB-A962-01 3 112648204 112648204 G A CD200R1 Missense_Mutation p.T118I 0.40 tolerated(0.09) probably_damaging(0.998) TCGA-ZB-A962-01 3 172631487 172631487 T C SPATA16 Silent p.R517R 0.39 TCGA-ZB-A962-01 5 132270259 132270259 T - AFF4 Frame_Shift_Del p.G167Afs*24 0.14 TCGA-ZB-A962-01 5 160029679 160029679 G T ATP10B Missense_Mutation p.R1090S 0.22 deleterious(0) possibly_damaging(0.72) TCGA-ZB-A962-01 5 5146385 5146385 C T ADAMTS16 Silent p.H106H 0.40 TCGA-ZB-A962-01 6 91226068 91226068 A C MAP3K7 3'UTR 0.48 TCGA-ZB-A962-01 7 106797706 106797706 G T PRKAR2B Missense_Mutation p.A354S 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-ZB-A962-01 7 157061204 157061204 A G UBE3C 3'UTR 0.56 TCGA-ZB-A962-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.39 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A962-01 7 95223079 95223079 A G PDK4 Silent p.Y92Y 0.14 TCGA-ZB-A962-01 8 169279 169317 TTTTTCCTCACCTTCCTCAATGGCCTGCAGCCACGTCTC CTTTTGCCTCACCTTCCTCAATGGTCTCCAGCCACGTCT RPL23AP53 Splice_Site 0.09 TCGA-ZB-A963-01 10 104860533 104860533 C T NT5C2 Intron 0.09 TCGA-ZB-A963-01 10 123256154 123256154 C T FGFR2 Silent p.E586E 0.21 TCGA-ZB-A963-01 10 21414906 21414906 G A C10orf113 Missense_Mutation p.A105V 0.14 deleterious(0.02) possibly_damaging(0.682) TCGA-ZB-A963-01 10 49763509 49763509 T C ARHGAP22 Silent p.P107P 0.12 TCGA-ZB-A963-01 11 13388247 13388247 G A ARNTL Silent p.L196L 0.17 TCGA-ZB-A963-01 12 125437022 125437022 C T DHX37 Silent p.T930T 0.24 TCGA-ZB-A963-01 12 133209380 133209380 C T POLE Silent p.A2002A 0.25 TCGA-ZB-A963-01 12 7510020 7510020 C T CD163L1 Missense_Mutation p.A1448T 0.10 tolerated(0.27) benign(0.164) TCGA-ZB-A963-01 16 27689215 27689215 G A KIAA0556 Missense_Mutation p.D236N 0.09 tolerated(0.21) benign(0.013) TCGA-ZB-A963-01 17 27064478 27064478 G A NEK8 Missense_Mutation p.C258Y 0.22 deleterious(0) possibly_damaging(0.664) TCGA-ZB-A963-01 17 39723758 39723758 C A KRT9 Nonsense_Mutation p.G547* 0.06 TCGA-ZB-A963-01 17 47676783 47676783 C T SPOP 3'UTR 0.08 TCGA-ZB-A963-01 18 72264401 72264401 C T LINC00909 RNA 0.07 TCGA-ZB-A963-01 1 150547687 150547692 ATAGGT G MCL1 3'UTR 0.30 TCGA-ZB-A963-01 1 160341841 160341841 C A NHLH1 3'UTR 0.20 TCGA-ZB-A963-01 1 54432012 54432012 C A LRRC42 Missense_Mutation p.P324Q 0.10 tolerated(0.51) benign(0.01) TCGA-ZB-A963-01 3 38590387 38590387 A T SCN5A 3'UTR 0.12 TCGA-ZB-A963-01 4 128811126 128811126 C T PLK4 Missense_Mutation p.T522I 0.10 tolerated(0.22) benign(0.001) TCGA-ZB-A963-01 4 54347972 54347972 C T LNX1 Missense_Mutation p.R467Q 0.10 tolerated(1) benign(0) TCGA-ZB-A963-01 5 124080191 124080191 G A ZNF608 Silent p.N164N 0.21 TCGA-ZB-A963-01 7 156469172 156469172 C T RNF32 Silent p.G304G 0.15 TCGA-ZB-A963-01 7 63538269 63538269 A T ZNF727 Missense_Mutation p.E281V 0.11 deleterious(0.02) benign(0.423) TCGA-ZB-A963-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.08 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A963-01 X 106172961 106172962 - CTCCAC CLDN2 3'UTR 0.22 TCGA-ZB-A964-01 11 108043017 108043017 A T NPAT Silent p.T898T 0.39 TCGA-ZB-A964-01 11 117089217 117089217 G A PCSK7 Missense_Mutation p.P500L 0.70 tolerated(0.09) benign(0.032) TCGA-ZB-A964-01 11 533552 533552 C G HRAS Missense_Mutation p.K117N 0.53 deleterious(0.01) probably_damaging(0.995) TCGA-ZB-A964-01 12 132426425 132426425 T C PUS1 Missense_Mutation p.I378T 0.32 deleterious(0.05) benign(0.009) TCGA-ZB-A964-01 13 33739498 33739498 T C STARD13 Missense_Mutation p.K100R 0.15 tolerated(1) benign(0.032) TCGA-ZB-A964-01 15 91485796 91485796 A - UNC45A Frame_Shift_Del p.G275Afs*17 0.16 TCGA-ZB-A964-01 16 81929495 81929495 G C PLCG2 Missense_Mutation p.V386L 0.05 tolerated(1) possibly_damaging(0.879) TCGA-ZB-A964-01 17 55016368 55016368 A G COIL 3'UTR 0.12 TCGA-ZB-A964-01 18 21109629 21109629 C T C18orf8 Silent p.L483L 0.14 TCGA-ZB-A964-01 19 18392909 18392909 C T JUND 5'Flank 0.44 TCGA-ZB-A964-01 1 12460249 12460249 G A VPS13D Silent p.Q3882Q 0.14 TCGA-ZB-A964-01 1 169349772 169349772 G A BLZF1 Missense_Mutation p.R241H 0.55 tolerated(0.05) possibly_damaging(0.556) TCGA-ZB-A964-01 1 220101499 220101499 G T SLC30A10 Missense_Mutation p.T95N 0.22 deleterious(0) possibly_damaging(0.791) TCGA-ZB-A964-01 20 5482239 5482239 G A LINC00654 RNA 0.18 TCGA-ZB-A964-01 2 138772281 138772281 A G HNMT 3'UTR 0.44 TCGA-ZB-A964-01 2 157436212 157436212 T G GPD2 Missense_Mutation p.V657G 0.10 tolerated(0.42) benign(0.001) TCGA-ZB-A964-01 2 189871117 189871117 G C COL3A1 Missense_Mutation p.G1047A 0.06 probably_damaging(0.997) TCGA-ZB-A964-01 2 25194751 25194751 C A DNAJC27 Missense_Mutation p.R8L 0.52 deleterious(0.01) benign(0.141) TCGA-ZB-A964-01 3 124438425 124438425 T C RP11-71H17.7 5'Flank 0.42 TCGA-ZB-A964-01 3 38023461 38023461 G C CTDSPL 3'UTR 0.12 TCGA-ZB-A964-01 4 154626370 154626370 C T TLR2 Missense_Mutation p.R771W 0.48 deleterious(0) probably_damaging(0.935) TCGA-ZB-A964-01 6 116817973 116817973 T A TRAPPC3L 3'UTR 0.41 TCGA-ZB-A964-01 6 152673328 152673328 C T SYNE1 Missense_Mutation p.R3805Q 0.07 probably_damaging(0.997) TCGA-ZB-A964-01 6 31760543 31760543 G A VARS Missense_Mutation p.H218Y 0.41 deleterious(0.04) benign(0) TCGA-ZB-A964-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.44 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A964-01 X 106144755 106144755 G T RIPPLY1 Missense_Mutation p.A82E 0.25 tolerated(0.57) benign(0.219) TCGA-ZB-A965-01 10 126307329 126307329 C T FAM53B 3'Flank 0.27 TCGA-ZB-A965-01 10 51818960 51818960 T C RP11-324H6.5 RNA 0.05 TCGA-ZB-A965-01 10 62648684 62648690 ACTCTGG - RHOBTB1 Frame_Shift_Del p.P246Vfs*50 0.30 TCGA-ZB-A965-01 10 67680326 67680326 G A CTNNA3 Missense_Mutation p.A817V 0.11 deleterious(0) unknown(0) TCGA-ZB-A965-01 11 118184528 118184528 G T CD3E Missense_Mutation p.K153N 0.58 deleterious(0) probably_damaging(0.992) TCGA-ZB-A965-01 11 18195087 18195087 G A MRGPRX4 Missense_Mutation p.R95H 0.39 tolerated(0.54) benign(0.001) TCGA-ZB-A965-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.64 deleterious(0.02) probably_damaging(0.989) TCGA-ZB-A965-01 12 57111162 57111162 C T NACA Intron 0.15 TCGA-ZB-A965-01 12 68053874 68053874 A G DYRK2 3'UTR 0.04 TCGA-ZB-A965-01 14 24839464 24839464 G A NFATC4 Missense_Mutation p.R350H 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-ZB-A965-01 14 50697942 50697942 C G SOS2 Silent p.R20R 0.64 TCGA-ZB-A965-01 14 61995909 61995909 C T RP11-47I22.4 Missense_Mutation p.T22M 0.17 deleterious(0) possibly_damaging(0.814) TCGA-ZB-A965-01 14 70712650 70712650 A C ADAM21P1 RNA 0.32 TCGA-ZB-A965-01 15 33603222 33603222 G T RYR3 5'UTR 0.22 TCGA-ZB-A965-01 16 22094953 22094953 G T C16orf52 3'UTR 0.33 TCGA-ZB-A965-01 16 30680881 30680881 T C FBRS Missense_Mutation p.L953P 0.12 unknown(0) TCGA-ZB-A965-01 17 36622966 36622966 C T ARHGAP23 Nonsense_Mutation p.R348* 0.40 TCGA-ZB-A965-01 17 39966062 39966062 C T LEPREL4 Missense_Mutation p.C271Y 0.19 deleterious(0) probably_damaging(0.968) TCGA-ZB-A965-01 17 62043590 62043590 C T SCN4A Missense_Mutation p.G372S 0.35 deleterious(0.05) benign(0.294) TCGA-ZB-A965-01 19 15567048 15567048 G A RASAL3 Missense_Mutation p.R530W 0.08 deleterious(0.02) probably_damaging(0.912) TCGA-ZB-A965-01 19 39882046 39882046 C T MED29 Missense_Mutation p.A16V 0.08 tolerated_low_confidence(1) possibly_damaging(0.499) TCGA-ZB-A965-01 19 45024545 45024545 G A CEACAM20 RNA 0.19 TCGA-ZB-A965-01 19 48282004 48282004 C T SEPW1 5'UTR 0.55 TCGA-ZB-A965-01 19 51363454 51363454 C A KLK3 3'UTR 0.50 TCGA-ZB-A965-01 19 9063747 9063747 G C MUC16 Nonsense_Mutation p.S7900* 0.48 TCGA-ZB-A965-01 1 120437039 120437039 G A ADAM30 Missense_Mutation p.R641W 0.44 deleterious(0) probably_damaging(0.999) TCGA-ZB-A965-01 1 150596129 150596129 A G ENSA Intron 0.08 TCGA-ZB-A965-01 1 161512763 161512763 G C FCGR3A 3'UTR 0.24 TCGA-ZB-A965-01 1 183896123 183896123 C T RGL1 3'UTR 0.40 TCGA-ZB-A965-01 1 70488846 70488846 G A LRRC7 Missense_Mutation p.R490H 0.40 tolerated(0.06) benign(0.288) TCGA-ZB-A965-01 20 21690063 21690063 C T PAX1 Silent p.F421F 0.38 TCGA-ZB-A965-01 20 44869801 44869801 G A CDH22 Silent p.G117G 0.70 TCGA-ZB-A965-01 22 21337374 21337374 A G LZTR1 Missense_Mutation p.N87D 0.37 tolerated(0.3) possibly_damaging(0.838) TCGA-ZB-A965-01 22 42608141 42608141 T G TCF20 Missense_Mutation p.E1057D 0.38 benign(0.007) TCGA-ZB-A965-01 2 132046497 132046497 G A CYP4F31P 3'UTR 0.39 TCGA-ZB-A965-01 3 41280717 41280717 C T CTNNB1 Missense_Mutation p.P744S 0.58 tolerated_low_confidence(0.41) benign(0.015) TCGA-ZB-A965-01 3 9786002 9786002 G T BRPF1 Silent p.P910P 0.43 TCGA-ZB-A965-01 4 119626850 119626850 A G METTL14 Missense_Mutation p.I314V 0.17 deleterious(0.03) probably_damaging(0.956) TCGA-ZB-A965-01 4 166244037 166244041 TTAAA - KLHL2 3'Flank 0.42 TCGA-ZB-A965-01 4 41747864 41747864 T C PHOX2B Missense_Mutation p.N302S 0.41 deleterious_low_confidence(0.02) unknown(0) TCGA-ZB-A965-01 4 7765007 7765007 C T AFAP1 3'UTR 0.13 TCGA-ZB-A965-01 5 150945592 150945592 G A FAT2 Silent p.G967G 0.59 TCGA-ZB-A965-01 5 33614455 33614455 G T ADAMTS12 Silent p.G805G 0.27 TCGA-ZB-A965-01 6 139498355 139498355 A G HECA 3'UTR 0.50 TCGA-ZB-A965-01 6 152734623 152734623 C G SYNE1 Missense_Mutation p.E2032Q 0.30 benign(0.028) TCGA-ZB-A965-01 6 1613212 1613216 TTTTG - FOXC1 3'UTR 0.18 TCGA-ZB-A965-01 7 141349109 141349109 G A AGK Missense_Mutation p.S341N 0.16 deleterious(0.01) possibly_damaging(0.71) TCGA-ZB-A965-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.40 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A965-01 7 935032 935034 CGA - GET4 In_Frame_Del p.D320del 0.19 TCGA-ZB-A965-01 9 19120930 19120930 G T PLIN2 Silent p.T181T 0.30 TCGA-ZB-A965-01 9 35092105 35092105 C T PIGO Silent p.Q593Q 0.12 TCGA-ZB-A965-01 X 153041079 153041079 C T PLXNB3 Silent p.T1478T 0.20 TCGA-ZB-A965-01 X 30326468 30326468 G A NR0B1 Missense_Mutation p.T338M 0.40 tolerated(0.09) possibly_damaging(0.681) TCGA-ZB-A965-01 X 63411803 63411803 G T AMER1 Missense_Mutation p.T455N 0.36 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 10 101604103 101604103 C T ABCC2 Missense_Mutation p.P1290S 0.27 deleterious(0.05) probably_damaging(1) TCGA-ZB-A966-01 10 101636972 101636972 G A DNMBP Missense_Mutation p.A1557V 0.24 tolerated(0.08) probably_damaging(0.996) TCGA-ZB-A966-01 10 102690753 102690753 T - FAM178A Frame_Shift_Del p.L787* 0.24 TCGA-ZB-A966-01 10 102723517 102723518 - G FAM178A 3'Flank 0.27 TCGA-ZB-A966-01 10 105803591 105803591 A G COL17A1 Missense_Mutation p.V809A 0.24 possibly_damaging(0.682) TCGA-ZB-A966-01 10 105819448 105819448 T - COL17A1 Frame_Shift_Del p.E391Kfs*12 0.30 TCGA-ZB-A966-01 10 106034961 106034961 C - GSTO2 Intron 0.21 TCGA-ZB-A966-01 10 111630571 111630572 - A XPNPEP1 Frame_Shift_Ins p.L538Ffs*5 0.25 TCGA-ZB-A966-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.28 TCGA-ZB-A966-01 10 118084848 118084848 T A CCDC172 Missense_Mutation p.I38N 0.30 deleterious(0) possibly_damaging(0.829) TCGA-ZB-A966-01 10 119100598 119100598 A - PDZD8 Frame_Shift_Del p.P297Hfs*32 0.24 TCGA-ZB-A966-01 10 119308575 119308576 - G EMX2 3'UTR 0.13 TCGA-ZB-A966-01 10 123842741 123842741 G A TACC2 Silent p.G242G 0.33 TCGA-ZB-A966-01 10 13360448 13360448 T - SEPHS1 3'UTR 0.22 TCGA-ZB-A966-01 10 133981517 133981517 C T JAKMIP3 3'UTR 0.47 TCGA-ZB-A966-01 10 134659597 134659597 G A TTC40 Silent p.G2134G 0.48 TCGA-ZB-A966-01 10 134680891 134680891 G A TTC40 Silent p.D1577D 0.35 TCGA-ZB-A966-01 10 26500901 26500901 C T MYO3A 3'UTR 0.19 TCGA-ZB-A966-01 10 27524095 27524095 G T ACBD5 Missense_Mutation p.F76L 0.37 deleterious(0.01) probably_damaging(0.95) TCGA-ZB-A966-01 10 48389493 48389493 C T RBP3 Missense_Mutation p.R462H 0.29 tolerated(0.43) benign(0.073) TCGA-ZB-A966-01 10 49440315 49440315 G T FRMPD2 Silent p.S337S 0.21 TCGA-ZB-A966-01 10 50028336 50028336 G A WDFY4 Missense_Mutation p.D1855N 0.22 tolerated(0.35) benign(0.003) TCGA-ZB-A966-01 10 50532273 50532273 C T C10orf71 Silent p.P561P 0.17 TCGA-ZB-A966-01 10 50946024 50946024 C T OGDHL Missense_Mutation p.R829H 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 10 61840358 61840358 G A ANK3 Nonsense_Mutation p.R1457* 0.20 TCGA-ZB-A966-01 10 61843307 61843307 C T ANK3 Silent p.Q1381Q 0.31 TCGA-ZB-A966-01 10 70182065 70182065 A T DNA2 Missense_Mutation p.F958I 0.20 tolerated(0.17) benign(0.008) TCGA-ZB-A966-01 10 70404878 70404878 G A TET1 Missense_Mutation p.A798T 0.26 tolerated(0.28) benign(0.059) TCGA-ZB-A966-01 10 70406647 70406647 A G TET1 Silent p.T1387T 0.20 TCGA-ZB-A966-01 10 73576932 73576932 C T PSAP 3'UTR 0.20 TCGA-ZB-A966-01 10 75405488 75405488 G A SYNPO2L 3'UTR 0.22 TCGA-ZB-A966-01 10 75434061 75434061 C A AGAP5 3'UTR 0.08 TCGA-ZB-A966-01 10 81901886 81901886 C A PLAC9 Missense_Mutation p.A38E 0.07 tolerated(0.09) benign(0.084) TCGA-ZB-A966-01 10 86017732 86017732 C T RGR Silent p.D242D 0.44 TCGA-ZB-A966-01 10 93590871 93590871 C A TNKS2 Missense_Mutation p.P403H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-ZB-A966-01 10 94608366 94608366 A T EXOC6 Missense_Mutation p.T26S 0.46 tolerated(0.95) benign(0.015) TCGA-ZB-A966-01 10 94818407 94818407 A - EXOC6 3'UTR 0.18 TCGA-ZB-A966-01 10 94833787 94833787 C T CYP26A1 Silent p.C32C 0.28 TCGA-ZB-A966-01 10 97366405 97366405 T G ALDH18A1 3'UTR 0.27 TCGA-ZB-A966-01 10 99215505 99215507 AAG - ZDHHC16 In_Frame_Del p.K306del 0.34 TCGA-ZB-A966-01 11 1011107 1011107 C A AP2A2 3'UTR 0.10 TCGA-ZB-A966-01 11 107328471 107328471 C A CWF19L2 Missense_Mutation p.Q24H 0.29 deleterious(0.03) benign(0.008) TCGA-ZB-A966-01 11 10789707 10789707 A G CTR9 Missense_Mutation p.I653M 0.28 deleterious(0) benign(0.23) TCGA-ZB-A966-01 11 111386791 111386791 C A C11orf88 Missense_Mutation p.L99I 0.26 tolerated(0.25) benign(0.105) TCGA-ZB-A966-01 11 112019397 112019397 C T IL18 Missense_Mutation p.A97T 0.26 deleterious(0.04) possibly_damaging(0.565) TCGA-ZB-A966-01 11 114262180 114262180 T - C11orf71 3'UTR 0.16 TCGA-ZB-A966-01 11 118076603 118076603 G A AMICA1 Silent p.R176R 0.28 TCGA-ZB-A966-01 11 118769235 118769236 - G BCL9L Frame_Shift_Ins p.P1464Afs*53 0.28 TCGA-ZB-A966-01 11 118917366 118917366 C A HYOU1 Missense_Mutation p.R915L 0.27 deleterious(0.02) possibly_damaging(0.483) TCGA-ZB-A966-01 11 120176431 120176431 A G POU2F3 Missense_Mutation p.N238D 0.23 deleterious(0) probably_damaging(0.998) TCGA-ZB-A966-01 11 122775018 122775018 C T C11orf63 Missense_Mutation p.R244C 0.30 deleterious(0) probably_damaging(0.941) TCGA-ZB-A966-01 11 123900750 123900750 A G OR10G8 Missense_Mutation p.T141A 0.23 tolerated(1) benign(0.003) TCGA-ZB-A966-01 11 124509731 124509731 G A SIAE Silent p.D333D 0.49 TCGA-ZB-A966-01 11 124616996 124616996 C - NRGN 3'UTR 0.33 TCGA-ZB-A966-01 11 125497651 125497651 G T CHEK1 Missense_Mutation p.G72V 0.36 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 11 128628012 128628012 G T FLI1 Missense_Mutation p.E7D 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-ZB-A966-01 11 134237185 134237185 C T GLB1L2 Missense_Mutation p.T280M 0.28 deleterious(0) probably_damaging(0.981) TCGA-ZB-A966-01 11 17757798 17757798 C T KCNC1 Silent p.C83C 0.28 TCGA-ZB-A966-01 11 18158926 18158926 C T MRGPRX3 Silent p.N59N 0.30 TCGA-ZB-A966-01 11 18159303 18159303 T - MRGPRX3 Frame_Shift_Del p.L187Yfs*25 0.23 TCGA-ZB-A966-01 11 18232101 18232102 - A RP11-113D6.10 3'UTR 0.11 TCGA-ZB-A966-01 11 18636367 18636367 G - SPTY2D1 Frame_Shift_Del p.P485Rfs*12 0.27 TCGA-ZB-A966-01 11 22301099 22301099 T - ANO5 Frame_Shift_Del p.L845* 0.32 TCGA-ZB-A966-01 11 25100494 25100494 C T LUZP2 3'UTR 0.17 TCGA-ZB-A966-01 11 3039682 3039682 T C CARS Missense_Mutation p.S529G 0.23 tolerated(0.12) benign(0.158) TCGA-ZB-A966-01 11 35333816 35333816 T C SLC1A2 Missense_Mutation p.S164G 0.17 deleterious(0) probably_damaging(0.98) TCGA-ZB-A966-01 11 43364745 43364746 TG - API5 3'Flank 0.34 TCGA-ZB-A966-01 11 45954273 45954273 T - PHF21A 3'Flank 0.13 TCGA-ZB-A966-01 11 5068663 5068663 G A OR52J3 Missense_Mutation p.R303Q 0.31 tolerated(0.2) benign(0.006) TCGA-ZB-A966-01 11 5153619 5153619 C T OR52A5 Missense_Mutation p.G85D 0.20 deleterious(0.01) benign(0.114) TCGA-ZB-A966-01 11 55904926 55904926 T C OR8J3 Missense_Mutation p.K90R 0.33 tolerated(0.09) possibly_damaging(0.611) TCGA-ZB-A966-01 11 61735984 61735984 G T AP003733.1 Nonsense_Mutation p.G137* 0.21 TCGA-ZB-A966-01 11 62417152 62417152 G A INTS5 Missense_Mutation p.R134W 0.18 deleterious(0) probably_damaging(0.978) TCGA-ZB-A966-01 11 62563546 62563546 C T NXF1 Missense_Mutation p.A485T 0.24 tolerated(0.52) benign(0.058) TCGA-ZB-A966-01 11 64601226 64601226 C T CDC42BPG Missense_Mutation p.R850H 0.30 deleterious(0.02) possibly_damaging(0.8) TCGA-ZB-A966-01 11 65269313 65269313 G A MALAT1 RNA 0.28 TCGA-ZB-A966-01 11 65633355 65633355 C T MUS81 Missense_Mutation p.R527C 0.28 deleterious(0.01) possibly_damaging(0.462) TCGA-ZB-A966-01 11 66034178 66034178 G T KLC2 Intron 0.41 TCGA-ZB-A966-01 11 66103856 66103856 C T RIN1 Silent p.E6E 0.32 TCGA-ZB-A966-01 11 66188554 66188554 C T NPAS4 5'UTR 0.33 TCGA-ZB-A966-01 11 6632072 6632072 C T ILK 3'UTR 0.26 TCGA-ZB-A966-01 11 6654735 6654735 G T DCHS1 Missense_Mutation p.P788H 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 11 67925890 67925890 C T SUV420H1 Silent p.A641A 0.27 TCGA-ZB-A966-01 11 68773305 68773305 C T MRGPRF Missense_Mutation p.R158H 0.27 tolerated(1) benign(0.015) TCGA-ZB-A966-01 11 69625447 69625447 C T FGF3 Missense_Mutation p.E116K 0.26 tolerated(0.61) probably_damaging(0.999) TCGA-ZB-A966-01 11 70007369 70007369 C T ANO1 Missense_Mutation p.R561W 0.33 deleterious(0) probably_damaging(0.997) TCGA-ZB-A966-01 11 71823762 71823762 C T ANAPC15 5'UTR 0.11 TCGA-ZB-A966-01 11 72945997 72945997 C T P2RY2 Missense_Mutation p.R265C 0.17 deleterious(0.02) probably_damaging(0.913) TCGA-ZB-A966-01 11 73021101 73021101 C T ARHGEF17 Missense_Mutation p.T473M 0.30 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-ZB-A966-01 11 73964773 73964773 C A PPME1 3'UTR 0.27 TCGA-ZB-A966-01 11 78380640 78380640 G A TENM4 Silent p.D2250D 0.20 TCGA-ZB-A966-01 11 78383337 78383337 C T TENM4 Missense_Mutation p.R1845H 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-ZB-A966-01 11 83984195 83984195 G A DLG2 Intron 0.25 TCGA-ZB-A966-01 11 93425161 93425161 G T KIAA1731 Missense_Mutation p.A500S 0.25 deleterious(0) possibly_damaging(0.879) TCGA-ZB-A966-01 11 94134311 94134311 C T GPR83 Missense_Mutation p.V35M 0.36 tolerated_low_confidence(0.22) benign(0.064) TCGA-ZB-A966-01 11 94609401 94609401 T - AMOTL1 3'UTR 0.38 TCGA-ZB-A966-01 12 100441791 100441791 A - UHRF1BP1L Frame_Shift_Del p.L1301Wfs*9 0.18 TCGA-ZB-A966-01 12 107367019 107367019 A - C12orf23 3'UTR 0.46 TCGA-ZB-A966-01 12 108145770 108145770 C T PRDM4 Missense_Mutation p.G183D 0.28 deleterious_low_confidence(0.02) benign(0.073) TCGA-ZB-A966-01 12 110208200 110208200 T - FAM222A 3'UTR 0.64 TCGA-ZB-A966-01 12 110353318 110353318 G A TCHP Silent p.A477A 0.23 TCGA-ZB-A966-01 12 110475921 110475921 C T ANKRD13A 3'UTR 0.26 TCGA-ZB-A966-01 12 11091565 11091566 - T TAS2R14 Frame_Shift_Ins p.M81Nfs*7 0.23 TCGA-ZB-A966-01 12 111291293 111291293 C T CCDC63 Missense_Mutation p.R32W 0.41 deleterious(0) probably_damaging(0.989) TCGA-ZB-A966-01 12 112479884 112479884 C T NAA25 Missense_Mutation p.R800Q 0.29 tolerated(0.37) benign(0.003) TCGA-ZB-A966-01 12 118480647 118480647 G A WSB2 Silent p.H186H 0.39 TCGA-ZB-A966-01 12 120536641 120536641 C T RAB35 Missense_Mutation p.A151T 0.26 deleterious(0) probably_damaging(0.978) TCGA-ZB-A966-01 12 122079267 122079267 G A ORAI1 Silent p.Q210Q 0.16 TCGA-ZB-A966-01 12 124189166 124189166 G A TCTN2 Missense_Mutation p.R567H 0.24 tolerated(0.28) benign(0.023) TCGA-ZB-A966-01 12 124497889 124497889 C T ZNF664 3'UTR 0.22 TCGA-ZB-A966-01 12 125465190 125465190 G A DHX37 Missense_Mutation p.T195I 0.33 tolerated(0.19) benign(0.072) TCGA-ZB-A966-01 12 128900009 128900009 G A TMEM132C Missense_Mutation p.G273D 0.24 tolerated(0.23) benign(0.003) TCGA-ZB-A966-01 12 129178485 129178485 G A TMEM132C Missense_Mutation p.V521M 0.33 deleterious(0) probably_damaging(0.997) TCGA-ZB-A966-01 12 132445390 132445390 C A EP400 Missense_Mutation p.L76M 0.27 unknown(0) TCGA-ZB-A966-01 12 132624232 132624232 G A DDX51 Missense_Mutation p.P641L 0.56 deleterious(0.01) benign(0.014) TCGA-ZB-A966-01 12 14982272 14982272 T - ART4 3'UTR 0.32 TCGA-ZB-A966-01 12 21997479 21997480 - A ABCC9 Frame_Shift_Ins p.D1085* 0.17 TCGA-ZB-A966-01 12 266277 266277 A G IQSEC3 Missense_Mutation p.E747G 0.47 deleterious(0) probably_damaging(0.982) TCGA-ZB-A966-01 12 27955679 27955679 A - KLHL42 3'UTR 0.34 TCGA-ZB-A966-01 12 2937504 2937504 C T NRIP2 Missense_Mutation p.R191H 0.36 deleterious(0) probably_damaging(0.996) TCGA-ZB-A966-01 12 3392901 3392901 T - TSPAN9 3'UTR 0.36 TCGA-ZB-A966-01 12 4554431 4554431 G - FGF6 Frame_Shift_Del p.D103Tfs*26 0.33 TCGA-ZB-A966-01 12 46243410 46243410 G A ARID2 Missense_Mutation p.S588N 0.25 tolerated(0.71) benign(0) TCGA-ZB-A966-01 12 48528050 48528050 G A PFKM Missense_Mutation p.R281H 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 12 53819610 53819610 G A AMHR2 Silent p.Q253Q 0.42 TCGA-ZB-A966-01 12 53865444 53865444 G A PCBP2 Missense_Mutation p.R306H 0.09 tolerated(0.06) benign(0.02) TCGA-ZB-A966-01 12 54424434 54424434 A - HOXC6 3'UTR 0.20 TCGA-ZB-A966-01 12 55715136 55715136 C T OR6C1 Silent p.G251G 0.26 TCGA-ZB-A966-01 12 55820800 55820800 A G OR6C76 Missense_Mutation p.M255V 0.18 deleterious_low_confidence(0.04) benign(0.261) TCGA-ZB-A966-01 12 56230905 56230905 G - MMP19 Frame_Shift_Del p.P481Hfs*13 0.22 TCGA-ZB-A966-01 12 57828744 57828744 G A INHBC Silent p.Q25Q 0.30 TCGA-ZB-A966-01 12 6132810 6132810 C T VWF Silent p.T1122T 0.28 TCGA-ZB-A966-01 12 6457044 6457045 - C SCNN1A Frame_Shift_Ins p.P728Afs*62 0.39 TCGA-ZB-A966-01 12 6471270 6471270 C T SCNN1A Silent p.T333T 0.44 TCGA-ZB-A966-01 12 6669943 6669943 C - NOP2 Frame_Shift_Del p.G486Afs*23 0.26 TCGA-ZB-A966-01 12 66786159 66786159 G A GRIP1 Missense_Mutation p.T746M 0.15 deleterious(0) benign(0.093) TCGA-ZB-A966-01 12 6927635 6927636 - G CD4 Frame_Shift_Ins p.V405Rfs*37 0.27 TCGA-ZB-A966-01 12 72050504 72050504 A G ZFC3H1 Intron 0.30 TCGA-ZB-A966-01 12 7309220 7309220 T A CLSTN3 Intron 0.32 TCGA-ZB-A966-01 12 78605049 78605049 T - NAV3 3'Flank 0.24 TCGA-ZB-A966-01 12 85449668 85449668 A - LRRIQ1 Frame_Shift_Del p.K368Rfs*4 0.32 TCGA-ZB-A966-01 12 91550887 91550887 C T DCN Missense_Mutation p.R206H 0.35 deleterious(0.03) possibly_damaging(0.801) TCGA-ZB-A966-01 12 93100478 93100478 T G C12orf74 Missense_Mutation p.L24R 0.12 tolerated(0.1) possibly_damaging(0.458) TCGA-ZB-A966-01 12 96394809 96394809 G A LTA4H Silent p.P598P 0.21 TCGA-ZB-A966-01 13 103387768 103387768 G A CCDC168 Silent p.N464N 0.28 TCGA-ZB-A966-01 13 107211856 107211856 C T ARGLU1 Missense_Mutation p.R166H 0.35 tolerated(0.25) possibly_damaging(0.715) TCGA-ZB-A966-01 13 110434873 110434873 G A IRS2 Silent p.S1176S 0.39 TCGA-ZB-A966-01 13 111893611 111893611 G A ARHGEF7 Intron 0.42 TCGA-ZB-A966-01 13 113140327 113140327 G A TUBGCP3 Missense_Mutation p.R902W 0.25 deleterious(0) possibly_damaging(0.53) TCGA-ZB-A966-01 13 113485796 113485796 C T ATP11A Silent p.N443N 0.30 TCGA-ZB-A966-01 13 113851352 113851352 C T PCID2 Missense_Mutation p.V136I 0.27 tolerated(0.53) benign(0) TCGA-ZB-A966-01 13 113887634 113887634 G A CUL4A Missense_Mutation p.G219D 0.26 deleterious(0.01) benign(0.004) TCGA-ZB-A966-01 13 114426118 114426118 G A GRK1 Missense_Mutation p.A353T 0.40 deleterious(0.01) probably_damaging(1) TCGA-ZB-A966-01 13 20222608 20222608 G A MPHOSPH8 Missense_Mutation p.R422K 0.32 tolerated_low_confidence(0.58) benign(0.003) TCGA-ZB-A966-01 13 25008754 25008754 C T PARP4 Missense_Mutation p.E1509K 0.24 tolerated(0.75) benign(0.011) TCGA-ZB-A966-01 13 27255386 27255387 - C WASF3 Frame_Shift_Ins p.P308Afs*29 0.58 TCGA-ZB-A966-01 13 32869656 32869656 G A FRY 3'UTR 0.21 TCGA-ZB-A966-01 13 32968921 32968921 A G BRCA2 Missense_Mutation p.M3118V 0.30 tolerated(1) benign(0.011) TCGA-ZB-A966-01 13 35729943 35729943 A G NBEA Silent p.V826V 0.29 TCGA-ZB-A966-01 13 39452457 39452457 T C FREM2 Missense_Mutation p.V2953A 0.28 deleterious(0) benign(0.152) TCGA-ZB-A966-01 13 42481721 42481721 C T VWA8 Splice_Site p.X161_splice 0.38 TCGA-ZB-A966-01 13 44953801 44953801 G A SERP2 Missense_Mutation p.V37M 0.24 deleterious(0.03) possibly_damaging(0.714) TCGA-ZB-A966-01 13 46553965 46553965 C T ZC3H13 Missense_Mutation p.R632H 0.22 probably_damaging(0.997) TCGA-ZB-A966-01 13 46840907 46840907 T - LRRC63 Frame_Shift_Del p.F452Sfs*6 0.25 TCGA-ZB-A966-01 13 49906183 49906183 A G CAB39L Missense_Mutation p.M245T 0.32 deleterious(0) probably_damaging(0.99) TCGA-ZB-A966-01 13 50056925 50056925 C T SETDB2 Silent p.N415N 0.13 TCGA-ZB-A966-01 13 51969467 51969468 AG - INTS6 Frame_Shift_Del p.S194Cfs*7 0.28 TCGA-ZB-A966-01 13 66877227 66877227 T - PCDH9 3'UTR 0.15 TCGA-ZB-A966-01 13 74264206 74264206 T - KLF12 3'UTR 0.27 TCGA-ZB-A966-01 13 86368997 86368997 G - SLITRK6 Frame_Shift_Del p.H551Ifs*7 0.22 TCGA-ZB-A966-01 13 94197638 94197638 C T GPC6 Missense_Mutation p.R95C 0.30 deleterious(0) probably_damaging(0.93) TCGA-ZB-A966-01 13 96205185 96205185 G A CLDN10 Missense_Mutation p.V60I 0.40 deleterious(0.04) possibly_damaging(0.477) TCGA-ZB-A966-01 14 100367334 100367334 T - EML1 Frame_Shift_Del p.F343Lfs*41 0.27 TCGA-ZB-A966-01 14 100795092 100795093 - A SLC25A47 Frame_Shift_Ins p.V121Sfs*52 0.23 TCGA-ZB-A966-01 14 100808873 100808873 G - WARS Frame_Shift_Del p.R326Gfs*25 0.21 TCGA-ZB-A966-01 14 100848025 100848025 G A WDR25 Missense_Mutation p.C255Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-ZB-A966-01 14 102689838 102689838 C T WDR20 3'UTR 0.34 TCGA-ZB-A966-01 14 105185233 105185233 C - INF2 3'UTR 0.08 TCGA-ZB-A966-01 14 105353222 105353223 - C CEP170B Frame_Shift_Ins p.H885Pfs*47 0.33 TCGA-ZB-A966-01 14 105419322 105419322 G A AHNAK2 Silent p.A822A 0.18 TCGA-ZB-A966-01 14 106054585 106054585 C T IGHA2 Missense_Mutation p.A50T 0.13 tolerated(0.3) benign(0.003) TCGA-ZB-A966-01 14 106329418 106329418 G A IGHJ6 Silent p.T17T 0.27 TCGA-ZB-A966-01 14 20295852 20295852 T C OR4N2 Missense_Mutation p.L82S 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 14 21461287 21461287 G A METTL17 Missense_Mutation p.R180Q 0.22 deleterious(0.03) benign(0.366) TCGA-ZB-A966-01 14 21990871 21990871 G - SALL2 Frame_Shift_Del p.R1000Efs*71 0.29 TCGA-ZB-A966-01 14 22690175 22690175 G A TRAV35 Missense_Mutation p.S45N 0.39 deleterious(0.02) possibly_damaging(0.681) TCGA-ZB-A966-01 14 23395919 23395919 C T PRMT5 Silent p.T185T 0.28 TCGA-ZB-A966-01 14 23847585 23847585 T G CMTM5 Missense_Mutation p.F52V 0.17 deleterious(0) possibly_damaging(0.892) TCGA-ZB-A966-01 14 23994582 23994583 AT - ZFHX2 Frame_Shift_Del p.Y1523* 0.28 TCGA-ZB-A966-01 14 24572069 24572069 G A PCK2 Missense_Mutation p.A448T 0.21 deleterious(0) possibly_damaging(0.851) TCGA-ZB-A966-01 14 24729876 24729876 C T TGM1 Silent p.T179T 0.31 TCGA-ZB-A966-01 14 24836168 24836168 G T NFATC4 5'UTR 0.50 TCGA-ZB-A966-01 14 27066717 27066717 T C NOVA1 5'UTR 0.38 TCGA-ZB-A966-01 14 29238381 29238381 C T FOXG1 3'UTR 0.24 TCGA-ZB-A966-01 14 32562695 32562696 - A ARHGAP5 Frame_Shift_Ins p.N943Kfs*10 0.32 TCGA-ZB-A966-01 14 33291302 33291302 C T AKAP6 Missense_Mutation p.S1428L 0.25 tolerated_low_confidence(0.16) benign(0.003) TCGA-ZB-A966-01 14 38286843 38286843 A G TTC6 Missense_Mutation p.M1584V 0.33 tolerated(0.64) benign(0.032) TCGA-ZB-A966-01 14 50065655 50065655 C G LRR1 5'UTR 0.38 TCGA-ZB-A966-01 14 50088616 50088616 C T MGAT2 Silent p.C210C 0.33 TCGA-ZB-A966-01 14 70713487 70713487 C T ADAM21P1 RNA 0.29 TCGA-ZB-A966-01 14 74970043 74970043 T - LTBP2 Frame_Shift_Del p.V1590Sfs*151 0.33 TCGA-ZB-A966-01 14 75483880 75483880 G A MLH3 Missense_Mutation p.R1423C 0.40 tolerated(0.09) benign(0.082) TCGA-ZB-A966-01 14 88411976 88411976 G A GALC Missense_Mutation p.R531C 0.39 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 14 89625073 89625073 A - FOXN3 3'UTR 0.25 TCGA-ZB-A966-01 14 99636975 99636975 G A BCL11B 3'UTR 0.35 TCGA-ZB-A966-01 15 23891081 23891081 T C MAGEL2 5'UTR 0.32 TCGA-ZB-A966-01 15 28000463 28000463 G T OCA2 3'UTR 0.33 TCGA-ZB-A966-01 15 28441399 28441399 T A HERC2 Missense_Mutation p.H2741L 0.28 possibly_damaging(0.828) TCGA-ZB-A966-01 15 29429340 29429340 C T FAM189A1 Missense_Mutation p.V230I 0.15 tolerated(0.94) possibly_damaging(0.796) TCGA-ZB-A966-01 15 32815221 32815221 C T RP11-632K20.7 RNA 0.24 TCGA-ZB-A966-01 15 33357216 33357216 C T FMN1 Nonsense_Mutation p.W478* 0.38 TCGA-ZB-A966-01 15 35082418 35082418 C T ACTC1 3'UTR 0.31 TCGA-ZB-A966-01 15 40754411 40754411 C A BAHD1 Missense_Mutation p.P578Q 0.42 tolerated_low_confidence(0.66) probably_damaging(0.997) TCGA-ZB-A966-01 15 40764651 40764651 G T CHST14 3'UTR 0.26 TCGA-ZB-A966-01 15 41768665 41768665 T C RTF1 Missense_Mutation p.F502L 0.26 deleterious(0) probably_damaging(0.994) TCGA-ZB-A966-01 15 42062051 42062052 - T MGA 3'UTR 0.26 TCGA-ZB-A966-01 15 43714075 43714075 G T TP53BP1 Silent p.R1360R 0.25 TCGA-ZB-A966-01 15 44093946 44093946 G A HYPK Missense_Mutation p.R111H 0.33 deleterious(0.01) possibly_damaging(0.845) TCGA-ZB-A966-01 15 57580697 57580697 T - TCF12 3'UTR 0.20 TCGA-ZB-A966-01 15 57809086 57809086 A C CGNL1 Missense_Mutation p.S838R 0.35 tolerated(0.05) benign(0.094) TCGA-ZB-A966-01 15 59960302 59960303 - T BNIP2 Intron 0.24 TCGA-ZB-A966-01 15 62300907 62300907 C T VPS13C Silent p.A355A 0.32 TCGA-ZB-A966-01 15 63967237 63967237 G A HERC1 Nonsense_Mutation p.R2384* 0.20 TCGA-ZB-A966-01 15 64424072 64424072 G A SNX1 Missense_Mutation p.R401H 0.33 deleterious(0.04) probably_damaging(0.99) TCGA-ZB-A966-01 15 66645207 66645207 G T TIPIN Missense_Mutation p.P27T 0.28 deleterious(0.01) probably_damaging(0.963) TCGA-ZB-A966-01 15 72549731 72549731 G A PARP6 Silent p.G319G 0.28 TCGA-ZB-A966-01 15 72577731 72577731 T C CELF6 3'UTR 0.27 TCGA-ZB-A966-01 15 72958350 72958350 C A GOLGA6B Missense_Mutation p.P612H 0.06 tolerated(0.55) probably_damaging(0.996) TCGA-ZB-A966-01 15 73468854 73468854 A - NEO1 Frame_Shift_Del p.N377Mfs*14 0.25 TCGA-ZB-A966-01 15 75137863 75137863 G A SCAMP2 Missense_Mutation p.A269V 0.31 deleterious(0) probably_damaging(0.996) TCGA-ZB-A966-01 15 75499654 75499654 C T C15orf39 Missense_Mutation p.A422V 0.32 tolerated(0.14) possibly_damaging(0.695) TCGA-ZB-A966-01 15 75663534 75663534 A - SIN3A 3'UTR 0.17 TCGA-ZB-A966-01 15 75706642 75706642 G A SIN3A Missense_Mutation p.A126V 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 15 78917215 78917215 G A CHRNB4 3'UTR 0.36 TCGA-ZB-A966-01 15 83679095 83679095 T C C15orf40 Silent p.E44E 0.28 TCGA-ZB-A966-01 15 89398410 89398410 A G ACAN Missense_Mutation p.D865G 0.16 deleterious(0.03) possibly_damaging(0.9) TCGA-ZB-A966-01 15 89858550 89858550 G A FANCI Missense_Mutation p.R1285Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 16 11097045 11097045 G A CLEC16A Missense_Mutation p.V396I 0.35 tolerated(0.19) benign(0.017) TCGA-ZB-A966-01 16 1273479 1273479 G A TPSG1 Silent p.C63C 0.50 TCGA-ZB-A966-01 16 16315498 16315498 G A ABCC6 Intron 0.24 TCGA-ZB-A966-01 16 16338949 16338949 G T NOMO3 Missense_Mutation p.G143C 0.32 deleterious(0) probably_damaging(0.997) TCGA-ZB-A966-01 16 18937327 18937327 C T SMG1 Missense_Mutation p.G13S 0.29 tolerated_low_confidence(0.21) unknown(0) TCGA-ZB-A966-01 16 19725891 19725891 T - KNOP1 Frame_Shift_Del p.K156Rfs*57 0.22 TCGA-ZB-A966-01 16 2168302 2168302 G T PKD1 Missense_Mutation p.L231M 0.30 probably_damaging(0.971) TCGA-ZB-A966-01 16 23711986 23711986 G - ERN2 Frame_Shift_Del p.L515Wfs*48 0.12 TCGA-ZB-A966-01 16 24818020 24818021 TT - TNRC6A Frame_Shift_Del p.F1486Pfs*2 0.30 TCGA-ZB-A966-01 16 29115257 29115257 T - CTB-134H23.3 RNA 0.22 TCGA-ZB-A966-01 16 29825915 29825915 C - PRRT2 Frame_Shift_Del p.V383Sfs*? 0.32 TCGA-ZB-A966-01 16 30567057 30567057 G A ZNF764 Missense_Mutation p.R229W 0.07 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 16 30793648 30793648 G A ZNF629 Silent p.C667C 0.26 TCGA-ZB-A966-01 16 31408919 31408919 C T ITGAD Missense_Mutation p.R82C 0.30 deleterious(0.01) benign(0.001) TCGA-ZB-A966-01 16 3169491 3169491 G A ZNF205 Missense_Mutation p.R277H 0.30 tolerated(0.18) benign(0) TCGA-ZB-A966-01 16 32265819 32265819 T C TP53TG3D Intron 0.60 TCGA-ZB-A966-01 16 418359 418359 G A MRPL28 Missense_Mutation p.A211V 0.21 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 16 47117420 47117420 G A NETO2 Silent p.T430T 0.39 TCGA-ZB-A966-01 16 50583397 50583397 G A NKD1 Silent p.Q41Q 0.36 TCGA-ZB-A966-01 16 50825519 50825519 A - CYLD Frame_Shift_Del p.N722Mfs*13 0.35 TCGA-ZB-A966-01 16 56691935 56691936 TC - MT1F 5'UTR 0.56 TCGA-ZB-A966-01 16 57953050 57953050 C T CNGB1 Missense_Mutation p.R637H 0.44 deleterious(0.03) probably_damaging(0.917) TCGA-ZB-A966-01 16 58580623 58580623 C T CNOT1 Missense_Mutation p.A1261T 0.42 deleterious(0) benign(0.223) TCGA-ZB-A966-01 16 62353 62353 C T WASH4P 3'Flank 0.47 TCGA-ZB-A966-01 16 66974547 66974547 C T CES2 Silent p.G319G 0.40 TCGA-ZB-A966-01 16 69732082 69732082 G T NFAT5 3'UTR 0.37 TCGA-ZB-A966-01 16 72828653 72828653 C T ZFHX3 Missense_Mutation p.R2643H 0.28 unknown(0) TCGA-ZB-A966-01 16 75564907 75564907 T - CHST5 5'UTR 0.25 TCGA-ZB-A966-01 16 87730277 87730277 C T JPH3 3'UTR 0.22 TCGA-ZB-A966-01 16 88782780 88782780 C T PIEZO1 Silent p.S2346S 0.46 TCGA-ZB-A966-01 16 88930697 88930697 G T PABPN1L Missense_Mutation p.P249T 0.29 tolerated(0.39) benign(0.017) TCGA-ZB-A966-01 16 89653462 89653462 G A CPNE7 Silent p.V368V 0.33 TCGA-ZB-A966-01 16 90072511 90072511 G C DBNDD1 3'UTR 0.39 TCGA-ZB-A966-01 17 10227551 10227551 G A MYH13 Missense_Mutation p.R908W 0.17 deleterious(0) probably_damaging(0.993) TCGA-ZB-A966-01 17 10595204 10595204 C T SCO1 Missense_Mutation p.A214T 0.25 deleterious(0.01) possibly_damaging(0.821) TCGA-ZB-A966-01 17 15619437 15619437 A G ZNF286A Silent p.S133S 0.26 TCGA-ZB-A966-01 17 16735660 16735660 G A KRT16P2 RNA 0.19 TCGA-ZB-A966-01 17 17726853 17726853 C A SREBF1 Missense_Mutation p.A54S 0.28 tolerated_low_confidence(0.57) possibly_damaging(0.588) TCGA-ZB-A966-01 17 18396087 18396087 C T LGALS9C Missense_Mutation p.R280C 0.46 tolerated(0.13) probably_damaging(1) TCGA-ZB-A966-01 17 18638283 18638283 A T TRIM16L Missense_Mutation p.E186V 0.12 deleterious(0) possibly_damaging(0.772) TCGA-ZB-A966-01 17 19232054 19232054 G - EPN2 Frame_Shift_Del p.V395Cfs*56 0.27 TCGA-ZB-A966-01 17 19582127 19582127 C T SLC47A2 Missense_Mutation p.A561T 0.32 tolerated(0.38) benign(0.002) TCGA-ZB-A966-01 17 21825494 21825494 G A FAM27L RNA 0.29 TCGA-ZB-A966-01 17 26370220 26370220 A T NLK Silent p.A107A 0.34 TCGA-ZB-A966-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.20 TCGA-ZB-A966-01 17 26961698 26961698 T C KIAA0100 Silent p.A969A 0.31 TCGA-ZB-A966-01 17 27580800 27580800 C T CRYBA1 Missense_Mutation p.A167V 0.25 deleterious(0.04) probably_damaging(0.934) TCGA-ZB-A966-01 17 27871144 27871144 G A TAOK1 3'UTR 0.31 TCGA-ZB-A966-01 17 28960344 28960344 A - LRRC37BP1 RNA 0.14 TCGA-ZB-A966-01 17 3195464 3195464 C G OR3A1 Missense_Mutation p.R138P 0.33 tolerated(0.2) possibly_damaging(0.796) TCGA-ZB-A966-01 17 3301569 3301569 T C OR1E1 Missense_Mutation p.I46V 0.35 tolerated(0.12) benign(0.014) TCGA-ZB-A966-01 17 37881075 37881075 C T ERBB2 Missense_Mutation p.P802S 0.14 deleterious(0.03) probably_damaging(0.957) TCGA-ZB-A966-01 17 39775850 39775850 C T KRT17 Missense_Mutation p.R432H 0.22 tolerated_low_confidence(0.64) benign(0) TCGA-ZB-A966-01 17 40023863 40023863 A - ACLY 3'UTR 0.32 TCGA-ZB-A966-01 17 40146920 40146920 C A DNAJC7 Nonsense_Mutation p.E150* 0.31 TCGA-ZB-A966-01 17 40174435 40174435 C T NKIRAS2 Missense_Mutation p.T38M 0.40 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 17 40262881 40262881 C T DHX58 Missense_Mutation p.V141I 0.40 deleterious(0.02) benign(0.44) TCGA-ZB-A966-01 17 40277784 40277784 G A RAB5C 3'UTR 0.17 TCGA-ZB-A966-01 17 40369192 40369192 C A STAT5B Missense_Mutation p.V456F 0.29 deleterious(0) benign(0.072) TCGA-ZB-A966-01 17 40815025 40815025 C T TUBG2 Missense_Mutation p.T145M 0.39 deleterious(0) probably_damaging(0.997) TCGA-ZB-A966-01 17 42483347 42483348 - T GPATCH8 Frame_Shift_Ins p.Q189Tfs*10 0.22 TCGA-ZB-A966-01 17 4389637 4389637 G A SPNS3 Intron 0.19 TCGA-ZB-A966-01 17 45234694 45234694 T C CDC27 Missense_Mutation p.N178D 0.29 tolerated(0.21) benign(0.009) TCGA-ZB-A966-01 17 45360742 45360742 G A ITGB3 Missense_Mutation p.R63H 0.22 deleterious(0) probably_damaging(0.993) TCGA-ZB-A966-01 17 4576011 4576012 - C PELP1 Frame_Shift_Ins p.R759Efs*11 0.31 TCGA-ZB-A966-01 17 46196358 46196358 C T SNX11 Silent p.L117L 0.19 TCGA-ZB-A966-01 17 46670666 46670666 T C HOXB5 Missense_Mutation p.S127G 0.26 tolerated(0.37) benign(0.024) TCGA-ZB-A966-01 17 48613920 48613920 G A EPN3 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.993) TCGA-ZB-A966-01 17 48703864 48703864 G - CACNA1G Frame_Shift_Del p.P2298Lfs*16 0.26 TCGA-ZB-A966-01 17 56247089 56247089 C T OR4D2 Missense_Mutation p.R25C 0.33 tolerated(0.1) benign(0.302) TCGA-ZB-A966-01 17 56321401 56321401 C T LPO Silent p.A41A 0.30 TCGA-ZB-A966-01 17 56770051 56770051 G A RAD51C Missense_Mutation p.S16N 0.22 deleterious(0.04) possibly_damaging(0.548) TCGA-ZB-A966-01 17 5984033 5984033 C T WSCD1 Silent p.L19L 0.11 TCGA-ZB-A966-01 17 60021208 60021208 A - MED13 3'UTR 0.14 TCGA-ZB-A966-01 17 60743591 60743591 C T MRC2 Silent p.Y219Y 0.37 TCGA-ZB-A966-01 17 61482503 61482504 - G TANC2 Frame_Shift_Ins p.K1046Qfs*39 0.21 TCGA-ZB-A966-01 17 61772739 61772740 AG - MAP3K3 3'UTR 0.17 TCGA-ZB-A966-01 17 65734453 65734453 A - NOL11 Frame_Shift_Del p.R584Efs*22 0.27 TCGA-ZB-A966-01 17 72589372 72589372 G A C17orf77 3'UTR 0.21 TCGA-ZB-A966-01 17 73888095 73888095 C T TRIM65 Missense_Mutation p.V306M 0.19 tolerated(0.25) benign(0.014) TCGA-ZB-A966-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.27 deleterious(0) probably_damaging(0.998) TCGA-ZB-A966-01 17 76202113 76202113 G T AFMID Missense_Mutation p.K294N 0.32 tolerated(0.17) benign(0.055) TCGA-ZB-A966-01 17 76522783 76522783 C T DNAH17 Missense_Mutation p.E1221K 0.22 benign(0.001) TCGA-ZB-A966-01 17 7720010 7720010 C T DNAH2 Missense_Mutation p.S3284L 0.17 benign(0.298) TCGA-ZB-A966-01 17 78069070 78069070 C T CCDC40 Silent p.L947L 0.25 TCGA-ZB-A966-01 17 78247137 78247137 G A RNF213 Silent p.P65P 0.30 TCGA-ZB-A966-01 17 80401910 80401910 A G C17orf62 Silent p.S178S 0.18 TCGA-ZB-A966-01 18 10532719 10532719 A - NAPG Frame_Shift_Del p.N47Mfs*13 0.22 TCGA-ZB-A966-01 18 12122493 12122493 A - ANKRD62 Frame_Shift_Del p.K480Sfs*5 0.26 TCGA-ZB-A966-01 18 12329724 12329724 A - AFG3L2 Frame_Shift_Del p.L745Wfs*96 0.27 TCGA-ZB-A966-01 18 14478350 14478350 C G CXADRP3 RNA 0.34 TCGA-ZB-A966-01 18 20606151 20606151 G A RBBP8 Missense_Mutation p.R881H 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 18 25531045 25531046 TT - CDH2 3'UTR 0.29 TCGA-ZB-A966-01 18 39661312 39661312 T C PIK3C3 3'UTR 0.21 TCGA-ZB-A966-01 18 48500887 48500887 G T ELAC1 Missense_Mutation p.G38V 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 18 722201 722201 A - YES1 3'UTR 0.27 TCGA-ZB-A966-01 18 76755157 76755157 G A SALL3 Missense_Mutation p.A1056T 0.26 tolerated(0.66) benign(0.004) TCGA-ZB-A966-01 18 9256772 9256773 - A ANKRD12 Frame_Shift_Ins p.N1171Kfs*14 0.19 TCGA-ZB-A966-01 19 1111067 1111068 CA - SBNO2 Frame_Shift_Del p.V945Gfs*120 0.19 TCGA-ZB-A966-01 19 11508234 11508234 C T RGL3 Missense_Mutation p.A602T 0.14 tolerated(0.38) unknown(0) TCGA-ZB-A966-01 19 11878013 11878013 T C ZNF441 Splice_Site p.X1_splice 0.10 TCGA-ZB-A966-01 19 12766517 12766517 G A MAN2B1 Silent p.I607I 0.13 TCGA-ZB-A966-01 19 14261047 14261047 C T LPHN1 3'UTR 0.24 TCGA-ZB-A966-01 19 15350575 15350575 T C BRD4 Missense_Mutation p.K1114E 0.37 benign(0.292) TCGA-ZB-A966-01 19 17759402 17759402 T A UNC13A Missense_Mutation p.T552S 0.33 deleterious(0.02) possibly_damaging(0.869) TCGA-ZB-A966-01 19 18180422 18180422 C T IL12RB1 Missense_Mutation p.G375S 0.29 tolerated(0.18) benign(0.09) TCGA-ZB-A966-01 19 18186568 18186568 C T IL12RB1 Missense_Mutation p.V231I 0.36 tolerated(0.35) benign(0.013) TCGA-ZB-A966-01 19 1828492 1828492 C T REXO1 Missense_Mutation p.R99H 0.30 deleterious(0) probably_damaging(0.998) TCGA-ZB-A966-01 19 19654911 19654911 G A CILP2 Silent p.R519R 0.29 TCGA-ZB-A966-01 19 19906351 19906351 T - ZNF506 Frame_Shift_Del p.G116Afs*5 0.34 TCGA-ZB-A966-01 19 2078278 2078278 G C MOB3A Silent p.G94G 0.33 TCGA-ZB-A966-01 19 22235335 22235335 T C ZNF257 5'UTR 0.26 TCGA-ZB-A966-01 19 2421915 2421915 G A TMPRSS9 Missense_Mutation p.V706M 0.23 deleterious(0) probably_damaging(0.988) TCGA-ZB-A966-01 19 31039047 31039047 G A ZNF536 Missense_Mutation p.A841T 0.31 deleterious(0.04) benign(0.015) TCGA-ZB-A966-01 19 34857309 34857309 C T GPI Missense_Mutation p.T100M 0.24 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-ZB-A966-01 19 3532525 3532525 G - FZR1 Frame_Shift_Del p.G375Afs*14 0.40 TCGA-ZB-A966-01 19 35622422 35622422 C T LGI4 Missense_Mutation p.V166I 0.21 tolerated(0.81) benign(0.005) TCGA-ZB-A966-01 19 3595731 3595731 C T TBXA2R Intron 0.27 TCGA-ZB-A966-01 19 37676361 37676361 C T ZNF585B Missense_Mutation p.S693N 0.26 tolerated(1) benign(0.024) TCGA-ZB-A966-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.15 TCGA-ZB-A966-01 19 38378416 38378416 T - WDR87 Frame_Shift_Del p.K1926Nfs*10 0.25 TCGA-ZB-A966-01 19 38709618 38709618 C - DPF1 Frame_Shift_Del p.E154Rfs*6 0.26 TCGA-ZB-A966-01 19 38855535 38855535 C T CATSPERG Missense_Mutation p.T827M 0.21 tolerated(0.11) possibly_damaging(0.897) TCGA-ZB-A966-01 19 39860622 39860622 G - SAMD4B Frame_Shift_Del p.G177Afs*5 0.38 TCGA-ZB-A966-01 19 39913718 39913718 C A PLEKHG2 Missense_Mutation p.P675H 0.36 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-ZB-A966-01 19 40520367 40520367 G A ZNF546 Missense_Mutation p.G397D 0.18 tolerated(0.56) probably_damaging(0.931) TCGA-ZB-A966-01 19 41759589 41759589 G T AXL Missense_Mutation p.R671L 0.27 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 19 42799460 42799460 C T CIC 3'UTR 0.37 TCGA-ZB-A966-01 19 44130991 44130991 C T CADM4 Silent p.P148P 0.30 TCGA-ZB-A966-01 19 44160700 44160700 G T PLAUR Missense_Mutation p.L135M 0.20 tolerated(0.14) probably_damaging(0.996) TCGA-ZB-A966-01 19 45150743 45150743 A G PVR Missense_Mutation p.M110V 0.19 tolerated(1) benign(0.001) TCGA-ZB-A966-01 19 45285627 45285627 C T CBLC Missense_Mutation p.P220S 0.31 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 19 46030112 46030112 T - VASP 3'UTR 0.42 TCGA-ZB-A966-01 19 47112136 47112136 C T CALM3 Missense_Mutation p.R107C 0.28 tolerated_low_confidence(0.07) benign(0.043) TCGA-ZB-A966-01 19 47969309 47969309 C T SLC8A2 Missense_Mutation p.V118M 0.27 deleterious(0.02) probably_damaging(0.97) TCGA-ZB-A966-01 19 47984057 47984057 C T KPTN Missense_Mutation p.V187M 0.29 deleterious(0.01) possibly_damaging(0.886) TCGA-ZB-A966-01 19 48206463 48206463 T - GLTSCR1 3'UTR 0.21 TCGA-ZB-A966-01 19 48565269 48565269 C T PLA2G4C Missense_Mutation p.G425R 0.19 deleterious(0.04) benign(0.414) TCGA-ZB-A966-01 19 48801293 48801293 G A CCDC114 Missense_Mutation p.P452L 0.20 tolerated(0.08) benign(0.059) TCGA-ZB-A966-01 19 48956016 48956016 G A GRWD1 Missense_Mutation p.V359I 0.37 tolerated(0.17) possibly_damaging(0.872) TCGA-ZB-A966-01 19 49368837 49368837 C T PLEKHA4 Missense_Mutation p.A39T 0.33 tolerated(0.69) benign(0.063) TCGA-ZB-A966-01 19 49714514 49714514 C T TRPM4 Missense_Mutation p.P1210S 0.29 tolerated(0.2) possibly_damaging(0.641) TCGA-ZB-A966-01 19 49971697 49971697 G T ALDH16A1 Silent p.V666V 0.45 TCGA-ZB-A966-01 19 50713829 50713829 G A MYH14 Silent p.A69A 0.30 TCGA-ZB-A966-01 19 50720873 50720873 C T MYH14 Missense_Mutation p.T136M 0.21 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 19 50986280 50986280 C - EMC10 3'UTR 0.30 TCGA-ZB-A966-01 19 51325019 51325019 C T KLK1 Missense_Mutation p.G52D 0.09 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 19 51470441 51470441 C T KLK6 Missense_Mutation p.A61T 0.16 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 19 51538135 51538135 G A KLK12 5'UTR 0.24 TCGA-ZB-A966-01 19 51650064 51650064 G T SIGLEC7 Missense_Mutation p.A361S 0.46 deleterious(0.04) benign(0.437) TCGA-ZB-A966-01 19 51892383 51892383 C - C19orf84 Frame_Shift_Del p.G139Afs*11 0.36 TCGA-ZB-A966-01 19 53058425 53058425 C T ZNF808 Silent p.C752C 0.25 TCGA-ZB-A966-01 19 53432596 53432596 C A ZNF321P Missense_Mutation p.G88W 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-ZB-A966-01 19 53518125 53553286 19:53518125-53553286 - ERVV-2 large deletion 0.19 TCGA-ZB-A966-01 19 53644236 53644236 A T ZNF347 Missense_Mutation p.H616Q 0.33 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 19 54308674 54308674 G T NLRP12 Silent p.A758A 0.33 TCGA-ZB-A966-01 19 54376795 54376795 G A MYADM Silent p.T4T 0.29 TCGA-ZB-A966-01 19 54969669 54969669 C T LENG8 Missense_Mutation p.R737C 0.25 deleterious(0) probably_damaging(0.997) TCGA-ZB-A966-01 19 55378174 55378174 G - KIR3DL2 Frame_Shift_Del p.V454Ffs*24 0.23 TCGA-ZB-A966-01 19 55417910 55417910 G A NCR1 Missense_Mutation p.E34K 0.32 tolerated(0.61) benign(0.008) TCGA-ZB-A966-01 19 55445914 55445914 C - NLRP7 Frame_Shift_Del p.G805Vfs*9 0.36 TCGA-ZB-A966-01 19 55697888 55697888 G T PTPRH Missense_Mutation p.L863M 0.38 probably_damaging(0.999) TCGA-ZB-A966-01 19 55912864 55912864 G A UBE2S Silent p.R203R 0.27 TCGA-ZB-A966-01 19 56459197 56459197 G T NLRP8 5'Flank 0.40 TCGA-ZB-A966-01 19 5667070 5667070 G A SAFB Missense_Mutation p.R783H 0.21 deleterious(0.02) unknown(0) TCGA-ZB-A966-01 19 57175295 57175295 G A ZNF835 Silent p.G424G 0.28 TCGA-ZB-A966-01 19 57641022 57641022 G A USP29 Missense_Mutation p.A327T 0.16 deleterious(0.01) probably_damaging(0.958) TCGA-ZB-A966-01 19 58003604 58003604 A G ZNF419 Intron 0.33 TCGA-ZB-A966-01 19 58004926 58004926 A G ZNF419 Missense_Mutation p.Q335R 0.30 tolerated(0.85) benign(0.287) TCGA-ZB-A966-01 19 58371214 58371214 C T ZNF587 Silent p.S478S 0.30 TCGA-ZB-A966-01 19 58374334 58374334 T - ZNF587 3'UTR 0.30 TCGA-ZB-A966-01 19 58384658 58384660 CTT - ZNF814 In_Frame_Del p.K700del 0.31 TCGA-ZB-A966-01 19 59028858 59028858 C T ZBTB45 Silent p.K61K 0.13 TCGA-ZB-A966-01 19 6262264 6262264 G T MLLT1 Missense_Mutation p.P84H 0.28 deleterious(0) probably_damaging(0.992) TCGA-ZB-A966-01 19 6387532 6387532 G A GTF2F1 Missense_Mutation p.T122M 0.25 deleterious(0) probably_damaging(0.944) TCGA-ZB-A966-01 19 7697344 7697344 G A PCP2 Missense_Mutation p.R76C 0.71 deleterious(0) probably_damaging(0.976) TCGA-ZB-A966-01 19 7965042 7965042 C T LRRC8E Silent p.N545N 0.28 TCGA-ZB-A966-01 19 7977638 7977638 C A MAP2K7 3'UTR 0.33 TCGA-ZB-A966-01 19 994348 994348 C T WDR18 3'UTR 0.50 TCGA-ZB-A966-01 1 10477498 10477498 C T PGD Silent p.T347T 0.38 TCGA-ZB-A966-01 1 1078309 1078310 - C RP11-465B22.5 RNA 0.36 TCGA-ZB-A966-01 1 11104974 11104974 G A MASP2 Intron 0.20 TCGA-ZB-A966-01 1 1111634 1111634 G T TTLL10 Intron 0.25 TCGA-ZB-A966-01 1 11169741 11169741 G A MTOR Missense_Mutation p.T2471M 0.33 tolerated(0.1) benign(0.093) TCGA-ZB-A966-01 1 111703836 111703836 T - CEPT1 Frame_Shift_Del p.C185Vfs*26 0.27 TCGA-ZB-A966-01 1 113471876 113471876 C A SLC16A1 Missense_Mutation p.G19C 0.44 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 11836644 11836644 G A C1orf167 Missense_Mutation p.C787Y 0.17 tolerated(1) unknown(0) TCGA-ZB-A966-01 1 118483747 118483747 C T WDR3 Nonsense_Mutation p.R264* 0.24 TCGA-ZB-A966-01 1 120263834 120263834 C T PHGDH Silent p.T60T 0.21 TCGA-ZB-A966-01 1 145473413 145473413 G A ANKRD34A Missense_Mutation p.A29T 0.19 deleterious(0) probably_damaging(0.998) TCGA-ZB-A966-01 1 145509002 145509002 C A RBM8A Silent p.P143P 0.16 TCGA-ZB-A966-01 1 145581435 145581435 G A PIAS3 Missense_Mutation p.R339H 0.15 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 147097868 147097869 TG - BCL9 3'UTR 0.08 TCGA-ZB-A966-01 1 150532263 150532263 G A ADAMTSL4 Silent p.T990T 0.33 TCGA-ZB-A966-01 1 151261161 151261162 TC - ZNF687 Frame_Shift_Del p.R760Pfs*99 0.26 TCGA-ZB-A966-01 1 151264215 151264215 G - ZNF687 3'UTR 0.18 TCGA-ZB-A966-01 1 151315023 151315023 C A RFX5 Missense_Mutation p.R497M 0.13 deleterious_low_confidence(0) benign(0.422) TCGA-ZB-A966-01 1 151700079 151700079 A G RIIAD1 Missense_Mutation p.I64V 0.23 tolerated(0.32) benign(0.019) TCGA-ZB-A966-01 1 152275306 152275306 G A FLG Missense_Mutation p.A4019V 0.14 unknown(0) TCGA-ZB-A966-01 1 152285917 152285917 T C FLG Missense_Mutation p.H482R 0.26 probably_damaging(0.956) TCGA-ZB-A966-01 1 152586488 152586488 C T LCE3B Missense_Mutation p.R68C 0.73 deleterious_low_confidence(0.01) unknown(0) TCGA-ZB-A966-01 1 152732859 152732859 C - KPRP Frame_Shift_Del p.R267Afs*19 0.19 TCGA-ZB-A966-01 1 153745528 153745530 GAA - INTS3 In_Frame_Del p.E1010del 0.14 TCGA-ZB-A966-01 1 15479034 15479034 C T TMEM51 5'UTR 0.30 TCGA-ZB-A966-01 1 155232988 155232988 G - CLK2 3'UTR 0.16 TCGA-ZB-A966-01 1 155451108 155451108 T C ASH1L Missense_Mutation p.K518R 0.19 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ZB-A966-01 1 155658220 155658221 - C YY1AP1 Frame_Shift_Ins p.R13Kfs*18 0.15 TCGA-ZB-A966-01 1 155979213 155979213 C T SSR2 3'UTR 0.27 TCGA-ZB-A966-01 1 156142758 156142758 C A SEMA4A Missense_Mutation p.L426I 0.09 tolerated(0.71) benign(0.012) TCGA-ZB-A966-01 1 156268898 156268898 T C VHLL Missense_Mutation p.E28G 0.19 deleterious(0) possibly_damaging(0.49) TCGA-ZB-A966-01 1 156351150 156351150 T C RHBG Missense_Mutation p.L229P 0.15 deleterious(0) probably_damaging(0.989) TCGA-ZB-A966-01 1 158065209 158065209 G - KIRREL 3'UTR 0.25 TCGA-ZB-A966-01 1 160093111 160093111 G - ATP1A2 Frame_Shift_Del p.F98Sfs*72 0.21 TCGA-ZB-A966-01 1 161090896 161090896 T C DEDD 3'UTR 0.16 TCGA-ZB-A966-01 1 161160331 161160331 A G ADAMTS4 3'UTR 0.18 TCGA-ZB-A966-01 1 16256949 16256950 - T SPEN Frame_Shift_Ins p.L1407Ffs*11 0.20 TCGA-ZB-A966-01 1 163313649 163313649 A - NUF2 Frame_Shift_Del p.N267Mfs*44 0.19 TCGA-ZB-A966-01 1 16355778 16355778 T G CLCNKA Missense_Mutation p.F404C 0.14 deleterious(0.03) possibly_damaging(0.604) TCGA-ZB-A966-01 1 165514119 165514119 G A LRRC52 Missense_Mutation p.A196T 0.23 tolerated(1) benign(0.001) TCGA-ZB-A966-01 1 169890633 169890633 T C KIFAP3 3'UTR 0.23 TCGA-ZB-A966-01 1 17282034 17282034 C T CROCC Silent p.S1231S 0.23 TCGA-ZB-A966-01 1 17354321 17354321 G A SDHB Missense_Mutation p.P155S 0.23 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 173776460 173776461 - A CENPL Frame_Shift_Ins p.S122Ffs*36 0.25 TCGA-ZB-A966-01 1 173906084 173906085 TA - RC3H1 3'UTR 0.28 TCGA-ZB-A966-01 1 178443434 178443434 T - RASAL2 3'Flank 0.20 TCGA-ZB-A966-01 1 180063541 180063541 C G CEP350 Silent p.V2767V 0.16 TCGA-ZB-A966-01 1 180971836 180971836 C T STX6 Missense_Mutation p.S69N 0.26 tolerated(0.7) benign(0.001) TCGA-ZB-A966-01 1 182026601 182026601 G A ZNF648 Missense_Mutation p.T182M 0.29 tolerated(0.11) possibly_damaging(0.452) TCGA-ZB-A966-01 1 183511427 183511427 G T SMG7 Silent p.V544V 0.24 TCGA-ZB-A966-01 1 183854067 183854067 G A RGL1 Missense_Mutation p.A351T 0.20 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 183857685 183857685 A - RGL1 Frame_Shift_Del p.K380Rfs*12 0.15 TCGA-ZB-A966-01 1 186106785 186106785 A G HMCN1 Missense_Mutation p.N4580D 0.26 benign(0.014) TCGA-ZB-A966-01 1 186276985 186276985 A T PRG4 Missense_Mutation p.T712S 0.31 unknown(0) TCGA-ZB-A966-01 1 186313621 186313621 C T TPR Silent p.E1101E 0.22 TCGA-ZB-A966-01 1 193066784 193066784 A G GLRX2 Missense_Mutation p.V98A 0.23 deleterious(0) probably_damaging(0.989) TCGA-ZB-A966-01 1 198828051 198828051 T A MIR181B1 RNA 0.25 TCGA-ZB-A966-01 1 200145122 200145122 G A NR5A2 3'UTR 0.20 TCGA-ZB-A966-01 1 201016708 201016708 C A CACNA1S Missense_Mutation p.K1496N 0.24 deleterious(0) possibly_damaging(0.905) TCGA-ZB-A966-01 1 201847762 201847764 AGA - IPO9 3'UTR 0.29 TCGA-ZB-A966-01 1 202842694 202842694 G A RP11-480I12.7 RNA 0.21 TCGA-ZB-A966-01 1 202861669 202861669 C T KLHL12 Missense_Mutation p.E567K 0.12 tolerated_low_confidence(0.1) benign(0.001) TCGA-ZB-A966-01 1 203682357 203682357 C A ATP2B4 Missense_Mutation p.T759N 0.19 deleterious(0.01) probably_damaging(0.959) TCGA-ZB-A966-01 1 203822789 203822789 C T ZC3H11A 3'UTR 0.27 TCGA-ZB-A966-01 1 204095792 204095792 C T SOX13 3'UTR 0.17 TCGA-ZB-A966-01 1 204159762 204159762 G T KISS1 Silent p.P89P 0.38 TCGA-ZB-A966-01 1 204588191 204588191 G A LRRN2 Silent p.P310P 0.16 TCGA-ZB-A966-01 1 205238455 205238455 C T TMCC2 Silent p.D375D 0.21 TCGA-ZB-A966-01 1 206225276 206225276 C T AVPR1B Missense_Mutation p.T279I 0.21 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 208216462 208216462 C T PLXNA2 Missense_Mutation p.A1321T 0.29 tolerated(0.35) probably_damaging(0.993) TCGA-ZB-A966-01 1 208219374 208219374 C T PLXNA2 Missense_Mutation p.R1115H 0.15 tolerated(0.36) probably_damaging(0.994) TCGA-ZB-A966-01 1 20827665 20827665 C - MUL1 Frame_Shift_Del p.A193Pfs*29 0.26 TCGA-ZB-A966-01 1 210024584 210024584 A G DIEXF Missense_Mutation p.Y688C 0.24 deleterious(0) probably_damaging(0.998) TCGA-ZB-A966-01 1 21106338 21106338 T - HP1BP3 Frame_Shift_Del p.S55Afs*15 0.21 TCGA-ZB-A966-01 1 212273860 212273860 T C DTL Missense_Mutation p.S510P 0.14 tolerated(0.2) possibly_damaging(0.616) TCGA-ZB-A966-01 1 212900363 212900363 C T NSL1 3'UTR 0.16 TCGA-ZB-A966-01 1 21306905 21306905 G - EIF4G3 Frame_Shift_Del p.Q90Nfs*43 0.26 TCGA-ZB-A966-01 1 21904120 21904120 C - ALPL Frame_Shift_Del p.L520* 0.22 TCGA-ZB-A966-01 1 223568377 223568377 C T C1orf65 Silent p.H520H 0.32 TCGA-ZB-A966-01 1 225211543 225211543 A - DNAH14 Frame_Shift_Del p.K447Rfs*12 0.20 TCGA-ZB-A966-01 1 226352529 226352529 G A ACBD3 Missense_Mutation p.A177V 0.16 tolerated(0.14) benign(0) TCGA-ZB-A966-01 1 228538624 228538624 C T OBSCN Silent p.G7090G 0.15 TCGA-ZB-A966-01 1 22973773 22973773 G A C1QC Missense_Mutation p.G79S 0.44 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 229771119 229771119 C A URB2 Silent p.S253S 0.13 TCGA-ZB-A966-01 1 232534410 232534410 A - SIPA1L2 3'UTR 0.21 TCGA-ZB-A966-01 1 233296104 233296104 G A PCNXL2 Missense_Mutation p.R1148C 0.28 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 1 233497906 233497906 C T MLK4 Silent p.D473D 0.22 TCGA-ZB-A966-01 1 23420409 23420409 G A LUZP1 Nonsense_Mutation p.R116* 0.30 TCGA-ZB-A966-01 1 234561467 234561467 C T TARBP1 Missense_Mutation p.M1132I 0.25 tolerated(0.29) benign(0.001) TCGA-ZB-A966-01 1 235345419 235345419 T - ARID4B Frame_Shift_Del p.T939Rfs*2 0.19 TCGA-ZB-A966-01 1 236646659 236646659 T C EDARADD 3'Flank 0.17 TCGA-ZB-A966-01 1 236744567 236744569 GAG - HEATR1 Nonsense_Mutation p.S903_Q904delins* 0.17 TCGA-ZB-A966-01 1 23687439 23687439 T C ZNF436 3'UTR 0.25 TCGA-ZB-A966-01 1 238053867 238053867 A G ZP4 Silent p.P23P 0.19 TCGA-ZB-A966-01 1 245849693 245849694 - A KIF26B Frame_Shift_Ins p.S1139Ifs*16 0.24 TCGA-ZB-A966-01 1 24979467 24979467 G A SRRM1 Silent p.P328P 0.26 TCGA-ZB-A966-01 1 25140616 25140616 G A CLIC4 Missense_Mutation p.G72R 0.33 deleterious(0.01) benign(0.277) TCGA-ZB-A966-01 1 25573068 25573068 C A C1orf63 Missense_Mutation p.R129S 0.23 deleterious(0.05) probably_damaging(0.943) TCGA-ZB-A966-01 1 26769265 26769265 T A DHDDS Missense_Mutation p.V75D 0.20 deleterious(0) probably_damaging(0.995) TCGA-ZB-A966-01 1 27108494 27108494 T - ARID1A 3'UTR 0.21 TCGA-ZB-A966-01 1 29585175 29585175 C T PTPRU Missense_Mutation p.R122C 0.35 deleterious(0) probably_damaging(0.967) TCGA-ZB-A966-01 1 3410403 3410404 - C MEGF6 Frame_Shift_Ins p.A1440Gfs*4 0.23 TCGA-ZB-A966-01 1 36642311 36642313 AGA - MAP7D1 In_Frame_Del p.K418del 0.19 TCGA-ZB-A966-01 1 36770066 36770066 T C THRAP3 3'UTR 0.19 TCGA-ZB-A966-01 1 38510751 38510751 G - POU3F1 3'UTR 0.31 TCGA-ZB-A966-01 1 43394959 43394959 G A SLC2A1 Silent p.F298F 0.24 TCGA-ZB-A966-01 1 43621891 43621891 C T FAM183A Silent p.R104R 0.19 TCGA-ZB-A966-01 1 47098539 47098539 A - ATPAF1 3'UTR 0.15 TCGA-ZB-A966-01 1 47143879 47143879 T - EFCAB14 3'UTR 0.28 TCGA-ZB-A966-01 1 52761600 52761600 G A ZFYVE9 Missense_Mutation p.R1095Q 0.24 deleterious(0) probably_damaging(0.924) TCGA-ZB-A966-01 1 52830227 52830227 C A CC2D1B Missense_Mutation p.K22N 0.15 deleterious(0) possibly_damaging(0.511) TCGA-ZB-A966-01 1 53373561 53373561 G A ECHDC2 Missense_Mutation p.R115W 0.34 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 62739569 62739569 C T KANK4 Missense_Mutation p.A403T 0.12 tolerated(1) benign(0) TCGA-ZB-A966-01 1 6314015 6314015 G A GPR153 Silent p.S183S 0.12 TCGA-ZB-A966-01 1 6536002 6536003 CA - PLEKHG5 Frame_Shift_Del p.V125Gfs*25 0.20 TCGA-ZB-A966-01 1 65693159 65693159 A G AK4 3'UTR 0.05 TCGA-ZB-A966-01 1 65860702 65860702 G A DNAJC6 Silent p.S675S 0.34 TCGA-ZB-A966-01 1 6634810 6634810 C T TAS1R1 Silent p.F206F 0.32 TCGA-ZB-A966-01 1 76228527 76228527 T - ACADM 3'Flank 0.14 TCGA-ZB-A966-01 1 78413956 78413956 A - FUBP1 3'Flank 0.21 TCGA-ZB-A966-01 1 82456236 82456236 A G LPHN2 Missense_Mutation p.I1207V 0.26 deleterious(0.02) probably_damaging(0.992) TCGA-ZB-A966-01 1 8385928 8385928 G A SLC45A1 Missense_Mutation p.A181T 0.42 deleterious(0.03) benign(0.202) TCGA-ZB-A966-01 1 8386016 8386016 C T SLC45A1 Missense_Mutation p.A210V 0.26 tolerated(0.16) possibly_damaging(0.781) TCGA-ZB-A966-01 1 89318925 89318925 T C GTF2B Missense_Mutation p.T308A 0.29 tolerated(0.11) benign(0.005) TCGA-ZB-A966-01 1 9085042 9085042 G A SLC2A7 Missense_Mutation p.P48L 0.23 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 1 914707 914707 G A C1orf170 Missense_Mutation p.T474M 0.31 tolerated(0.16) benign(0.004) TCGA-ZB-A966-01 20 18125916 18125917 - T CSRP2BP Frame_Shift_Ins p.R103* 0.36 TCGA-ZB-A966-01 20 22562846 22562846 G A FOXA2 Missense_Mutation p.P345L 0.20 tolerated(0.21) benign(0.154) TCGA-ZB-A966-01 20 23016417 23016417 C T SSTR4 Silent p.S99S 0.45 TCGA-ZB-A966-01 20 2464361 2464361 G A ZNF343 Nonsense_Mutation p.R416* 0.17 TCGA-ZB-A966-01 20 2776648 2776648 A G CPXM1 Missense_Mutation p.Y468H 0.26 deleterious(0) probably_damaging(0.992) TCGA-ZB-A966-01 20 30194280 30194280 T - ID1 3'UTR 0.24 TCGA-ZB-A966-01 20 30915423 30915423 G A KIF3B Missense_Mutation p.A643T 0.20 deleterious(0) benign(0.135) TCGA-ZB-A966-01 20 30919950 30919950 G A KIF3B 3'UTR 0.31 TCGA-ZB-A966-01 20 3145236 3145236 C T LZTS3 Missense_Mutation p.R629H 0.33 deleterious(0) probably_damaging(0.975) TCGA-ZB-A966-01 20 33438722 33438722 T C GGT7 Intron 0.23 TCGA-ZB-A966-01 20 34022399 34022399 G A GDF5 Missense_Mutation p.R272W 0.44 deleterious(0.05) probably_damaging(0.965) TCGA-ZB-A966-01 20 36625224 36625224 C T TTI1 Silent p.S975S 0.19 TCGA-ZB-A966-01 20 40033425 40033425 G A CHD6 Silent p.S2652S 0.19 TCGA-ZB-A966-01 20 44166077 44166077 G A EPPIN-WFDC6 3'UTR 0.46 TCGA-ZB-A966-01 20 44686286 44686286 C T SLC12A5 3'UTR 0.50 TCGA-ZB-A966-01 20 44686575 44686575 C A SLC12A5 3'Flank 0.39 TCGA-ZB-A966-01 20 51871248 51871248 G T TSHZ2 Missense_Mutation p.K417N 0.42 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 20 58439223 58439223 T - SYCP2 3'UTR 0.32 TCGA-ZB-A966-01 20 60528652 60528652 C T MIR1257 RNA 0.21 TCGA-ZB-A966-01 20 60921237 60921237 G A LAMA5 Silent p.T439T 0.30 TCGA-ZB-A966-01 20 62375333 62375333 T - ZBTB46 3'UTR 0.17 TCGA-ZB-A966-01 21 19165713 19165713 C T C21orf91 3'UTR 0.42 TCGA-ZB-A966-01 21 27066109 27066109 C T JAM2 Missense_Mutation p.R95W 0.30 deleterious(0.03) possibly_damaging(0.602) TCGA-ZB-A966-01 21 31859653 31859653 G A KRTAP19-2 Silent p.Y5Y 0.22 TCGA-ZB-A966-01 21 34926132 34926132 T C SON Missense_Mutation p.I1532T 0.33 benign(0.152) TCGA-ZB-A966-01 21 37732258 37732258 G A MORC3 Missense_Mutation p.R405H 0.38 deleterious(0.02) benign(0.429) TCGA-ZB-A966-01 21 38390443 38390443 G - RIPPLY3 Frame_Shift_Del p.E172Rfs*50 0.17 TCGA-ZB-A966-01 21 38600536 38600536 C T DSCR3 Missense_Mutation p.V216M 0.21 deleterious(0) probably_damaging(0.991) TCGA-ZB-A966-01 21 43710176 43710176 G A ABCG1 Missense_Mutation p.R426H 0.30 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 21 44163955 44163955 C T PDE9A Missense_Mutation p.A213V 0.24 tolerated(0.17) benign(0.009) TCGA-ZB-A966-01 21 44323857 44323857 A - NDUFV3 Frame_Shift_Del p.T247Pfs*8 0.11 TCGA-ZB-A966-01 21 44513132 44513132 A T U2AF1 3'UTR 0.19 TCGA-ZB-A966-01 21 45095033 45095033 G - RRP1B Frame_Shift_Del p.K182Rfs*4 0.24 TCGA-ZB-A966-01 21 45179177 45179177 G T PDXK 3'UTR 0.38 TCGA-ZB-A966-01 21 47697536 47697536 C T MCM3AP Missense_Mutation p.C588Y 0.34 deleterious(0.03) possibly_damaging(0.664) TCGA-ZB-A966-01 22 17589491 17589491 G - IL17RA Frame_Shift_Del p.A463Rfs*21 0.26 TCGA-ZB-A966-01 22 23437978 23437978 C T GNAZ Silent p.R32R 0.26 TCGA-ZB-A966-01 22 31032724 31032724 G - SLC35E4 Frame_Shift_Del p.A98Hfs*31 0.20 TCGA-ZB-A966-01 22 31328601 31328601 C T MORC2 Missense_Mutation p.R831H 0.28 tolerated_low_confidence(0.2) benign(0.001) TCGA-ZB-A966-01 22 33253242 33253242 C T TIMP3 Nonsense_Mutation p.R71* 0.24 TCGA-ZB-A966-01 22 33255663 33255663 T - TIMP3 3'UTR 0.15 TCGA-ZB-A966-01 22 37420809 37420809 G A MPST Missense_Mutation p.A205T 0.15 tolerated(0.21) benign(0.035) TCGA-ZB-A966-01 22 37768795 37768795 C - ELFN2 3'UTR 0.28 TCGA-ZB-A966-01 22 38121513 38121513 G A TRIOBP Missense_Mutation p.G984S 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.851) TCGA-ZB-A966-01 22 39888173 39888173 A T MGAT3 3'UTR 0.27 TCGA-ZB-A966-01 22 40257914 40257914 G A ENTHD1 Missense_Mutation p.R150C 0.24 deleterious(0.02) probably_damaging(1) TCGA-ZB-A966-01 22 41188562 41188562 T C SLC25A17 Missense_Mutation p.T101A 0.30 tolerated(1) benign(0.004) TCGA-ZB-A966-01 22 41564729 41564729 G A EP300 Missense_Mutation p.V1344M 0.24 probably_damaging(0.995) TCGA-ZB-A966-01 22 42383764 42383764 G A SEPT3 Splice_Site p.X184_splice 0.13 TCGA-ZB-A966-01 22 46835085 46835085 C T CELSR1 Splice_Site p.X1469_splice 0.36 TCGA-ZB-A966-01 22 50191729 50191729 C A BRD1 Missense_Mutation p.D608Y 0.25 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 22 51159900 51159900 C T SHANK3 Silent p.H1229H 0.21 TCGA-ZB-A966-01 2 100009524 100009524 T G EIF5B Missense_Mutation p.L948R 0.26 possibly_damaging(0.463) TCGA-ZB-A966-01 2 102508480 102508480 A G MAP4K4 3'Flank 0.31 TCGA-ZB-A966-01 2 108443524 108443524 G A RGPD4 Missense_Mutation p.A19T 0.35 tolerated(0.23) possibly_damaging(0.499) TCGA-ZB-A966-01 2 112786161 112786161 C T MERTK Missense_Mutation p.T907I 0.19 tolerated(0.06) benign(0.003) TCGA-ZB-A966-01 2 11586567 11586568 - A E2F6 3'UTR 0.16 TCGA-ZB-A966-01 2 128467396 128467396 G A WDR33 Missense_Mutation p.R1115C 0.41 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-ZB-A966-01 2 135744355 135744355 C T MAP3K19 Missense_Mutation p.R696H 0.41 deleterious(0.04) benign(0.04) TCGA-ZB-A966-01 2 136872415 136872415 A - CXCR4 3'UTR 0.47 TCGA-ZB-A966-01 2 1437290 1437290 T A TPO Missense_Mutation p.I87N 0.24 deleterious(0) possibly_damaging(0.836) TCGA-ZB-A966-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.28 TCGA-ZB-A966-01 2 165947440 165947440 A G SCN3A Silent p.C1741C 0.15 TCGA-ZB-A966-01 2 168099958 168099958 G - XIRP2 Frame_Shift_Del p.D688Mfs*5 0.32 TCGA-ZB-A966-01 2 170361317 170361317 C T BBS5 3'UTR 0.38 TCGA-ZB-A966-01 2 171538994 171538994 G A AC007277.3 RNA 0.33 TCGA-ZB-A966-01 2 174819668 174819668 A G SP3 Silent p.V524V 0.22 TCGA-ZB-A966-01 2 176947101 176947101 G A EVX2 Silent p.G168G 0.38 TCGA-ZB-A966-01 2 179300872 179300872 C A PRKRA Missense_Mutation p.D262Y 0.36 deleterious(0) possibly_damaging(0.75) TCGA-ZB-A966-01 2 18765849 18765849 G A NT5C1B Silent p.Y278Y 0.19 TCGA-ZB-A966-01 2 18766070 18766070 G A NT5C1B Missense_Mutation p.R205C 0.38 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-ZB-A966-01 2 1914112 1914112 C T MYT1L Missense_Mutation p.G571R 0.39 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 2 197565893 197565893 G A CCDC150 Missense_Mutation p.G562R 0.22 deleterious(0.02) probably_damaging(1) TCGA-ZB-A966-01 2 204292883 204292883 C T ABI2 3'UTR 0.32 TCGA-ZB-A966-01 2 20451242 20451242 A - PUM2 3'UTR 0.32 TCGA-ZB-A966-01 2 207630000 207630003 GAGA - MDH1B 5'UTR 0.38 TCGA-ZB-A966-01 2 208627897 208627898 AT - FZD5 3'UTR 0.15 TCGA-ZB-A966-01 2 209315497 209315497 G A PTH2R Missense_Mutation p.A293T 0.21 tolerated(0.12) benign(0.071) TCGA-ZB-A966-01 2 21224388 21224388 A - APOB 3'UTR 0.22 TCGA-ZB-A966-01 2 212247145 212247146 - T ERBB4 3'UTR 0.19 TCGA-ZB-A966-01 2 217300192 217300192 A - SMARCAL1 Frame_Shift_Del p.T541Pfs*29 0.17 TCGA-ZB-A966-01 2 219143774 219143777 AGAC - TMBIM1 Frame_Shift_Del p.V136Tfs*13 0.14 TCGA-ZB-A966-01 2 220403456 220403457 AA - ASIC4 3'UTR 0.20 TCGA-ZB-A966-01 2 223919558 223919558 A - KCNE4 3'UTR 0.16 TCGA-ZB-A966-01 2 228228336 228228336 C T TM4SF20 3'UTR 0.21 TCGA-ZB-A966-01 2 231380484 231380484 T - SP100 Intron 0.18 TCGA-ZB-A966-01 2 231741651 231741651 G A ITM2C Missense_Mutation p.R177H 0.23 deleterious(0.02) possibly_damaging(0.903) TCGA-ZB-A966-01 2 233274420 233274420 C T ALPPL2 Silent p.H479H 0.24 TCGA-ZB-A966-01 2 235962555 235962555 C T SH3BP4 3'UTR 0.34 TCGA-ZB-A966-01 2 236653408 236653408 G A AGAP1 Missense_Mutation p.V155I 0.32 tolerated(0.21) probably_damaging(0.964) TCGA-ZB-A966-01 2 239133835 239133835 G A AC016757.3 Missense_Mutation p.A147V 0.28 tolerated_low_confidence(0.97) benign(0) TCGA-ZB-A966-01 2 242648685 242648685 C T ING5 Missense_Mutation p.T55M 0.29 tolerated(0.07) benign(0.436) TCGA-ZB-A966-01 2 26410768 26410768 C T GAREML Missense_Mutation p.P756L 0.35 deleterious(0.01) benign(0.075) TCGA-ZB-A966-01 2 26700330 26700330 C T OTOF Missense_Mutation p.R787H 0.39 tolerated(0.25) benign(0.005) TCGA-ZB-A966-01 2 26950774 26950774 G A KCNK3 Missense_Mutation p.A175T 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-ZB-A966-01 2 27281449 27281449 G A AGBL5 Missense_Mutation p.R618Q 0.36 tolerated_low_confidence(0.07) benign(0.01) TCGA-ZB-A966-01 2 27306067 27306067 A G EMILIN1 Missense_Mutation p.Q543R 0.22 benign(0.002) TCGA-ZB-A966-01 2 27327327 27327327 G A CGREF1 Intron 0.16 TCGA-ZB-A966-01 2 27878452 27878453 AG - SUPT7L Frame_Shift_Del p.S254* 0.33 TCGA-ZB-A966-01 2 31489577 31489577 G - EHD3 3'UTR 0.24 TCGA-ZB-A966-01 2 33749514 33749514 A - RASGRP3 Frame_Shift_Del p.N237Ifs*5 0.29 TCGA-ZB-A966-01 2 33810307 33810307 C A FAM98A Missense_Mutation p.G365C 0.12 deleterious(0.01) unknown(0) TCGA-ZB-A966-01 2 37276898 37276898 T - HEATR5B Frame_Shift_Del p.N865Tfs*36 0.23 TCGA-ZB-A966-01 2 44021481 44021481 T - DYNC2LI1 Intron 0.33 TCGA-ZB-A966-01 2 44428376 44428377 AT - PPM1B Frame_Shift_Del p.H13Qfs*47 0.23 TCGA-ZB-A966-01 2 47639588 47639588 A - MSH2 Frame_Shift_Del p.A230Lfs*16 0.22 TCGA-ZB-A966-01 2 48741958 48741958 G A PPP1R21 3'UTR 0.09 TCGA-ZB-A966-01 2 54163925 54163925 C T PSME4 Silent p.V245V 0.30 TCGA-ZB-A966-01 2 54587451 54587451 A - C2orf73 Frame_Shift_Del p.T208Qfs*11 0.33 TCGA-ZB-A966-01 2 55775825 55775825 T - SMEK2 3'UTR 0.33 TCGA-ZB-A966-01 2 55921011 55921011 G T PNPT1 5'UTR 0.42 TCGA-ZB-A966-01 2 60684958 60684958 G A BCL11A 3'UTR 0.37 TCGA-ZB-A966-01 2 71825779 71825779 G A DYSF Silent p.T1220T 0.33 TCGA-ZB-A966-01 2 74274650 74274650 C T TET3 Missense_Mutation p.R401C 0.33 deleterious(0) probably_damaging(0.998) TCGA-ZB-A966-01 2 74474314 74474314 G A SLC4A5 Silent p.T636T 0.19 TCGA-ZB-A966-01 2 74512935 74512935 A G SLC4A5 Silent p.H122H 0.31 TCGA-ZB-A966-01 2 75929251 75929251 T - GCFC2 Intron 0.30 TCGA-ZB-A966-01 2 8439870 8439870 C T LINC00299 RNA 0.23 TCGA-ZB-A966-01 2 85532524 85532524 C T TCF7L1 Silent p.S329S 0.44 TCGA-ZB-A966-01 2 85553754 85553756 CTT - TGOLN2 In_Frame_Del p.K367del 0.30 TCGA-ZB-A966-01 2 86325826 86325826 G A POLR1A Missense_Mutation p.R114W 0.28 deleterious(0.01) probably_damaging(1) TCGA-ZB-A966-01 2 90044154 90044154 C A IGKV2D-24 Silent p.T25T 0.29 TCGA-ZB-A966-01 2 99232795 99232795 T - UNC50 Frame_Shift_Del p.F178Sfs*7 0.22 TCGA-ZB-A966-01 3 100534940 100534940 G A ABI3BP Intron 0.28 TCGA-ZB-A966-01 3 101369199 101369199 T C ZBTB11 3'UTR 0.14 TCGA-ZB-A966-01 3 112647940 112647940 C T CD200R1 Intron 0.36 TCGA-ZB-A966-01 3 112992057 112992057 G A BOC Missense_Mutation p.R368H 0.29 deleterious(0.04) benign(0.052) TCGA-ZB-A966-01 3 113187079 113187079 G A SPICE1 Silent p.R354R 0.17 TCGA-ZB-A966-01 3 119134183 119134183 A G ARHGAP31 Missense_Mutation p.E1136G 0.26 tolerated(0.16) benign(0.424) TCGA-ZB-A966-01 3 121208594 121208594 C T POLQ Missense_Mutation p.A1062T 0.20 tolerated_low_confidence(0.51) benign(0.001) TCGA-ZB-A966-01 3 121500719 121500719 C T IQCB1 Silent p.A427A 0.21 TCGA-ZB-A966-01 3 122634326 122634326 T A SEMA5B Missense_Mutation p.D704V 0.16 tolerated(0.17) benign(0.005) TCGA-ZB-A966-01 3 123008708 123008708 C T ADCY5 Missense_Mutation p.D1141N 0.26 tolerated(0.1) probably_damaging(0.954) TCGA-ZB-A966-01 3 126071428 126071428 G A KLF15 Missense_Mutation p.A113V 0.25 tolerated(0.34) benign(0.004) TCGA-ZB-A966-01 3 126708480 126708480 C T PLXNA1 Silent p.R348R 0.19 TCGA-ZB-A966-01 3 126751234 126751234 C - PLXNA1 Frame_Shift_Del p.L1747Cfs*5 0.43 TCGA-ZB-A966-01 3 127817784 127817784 C - RUVBL1 Frame_Shift_Del p.G253Dfs*7 0.22 TCGA-ZB-A966-01 3 128363786 128363786 C T RPN1 Missense_Mutation p.R101H 0.19 tolerated(0.09) possibly_damaging(0.575) TCGA-ZB-A966-01 3 129007805 129007805 C T HMCES Missense_Mutation p.R98C 0.27 deleterious(0) probably_damaging(0.983) TCGA-ZB-A966-01 3 130187649 130187649 T A COL6A5 Missense_Mutation p.N2267K 0.12 tolerated(0.05) benign(0.007) TCGA-ZB-A966-01 3 131181588 131181588 C T MRPL3 Silent p.A342A 0.12 TCGA-ZB-A966-01 3 135869602 135869603 - A MSL2 3'UTR 0.10 TCGA-ZB-A966-01 3 136221539 136221539 G A STAG1 Silent p.A253A 0.23 TCGA-ZB-A966-01 3 138023764 138023764 C T NME9 Missense_Mutation p.V187I 0.25 tolerated(0.27) benign(0.002) TCGA-ZB-A966-01 3 138183253 138183253 C T ESYT3 Nonsense_Mutation p.R328* 0.09 TCGA-ZB-A966-01 3 140123400 140123400 G T CLSTN2 Missense_Mutation p.K143N 0.26 tolerated(0.13) possibly_damaging(0.831) TCGA-ZB-A966-01 3 141011863 141011863 G A ACPL2 Missense_Mutation p.R420Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-ZB-A966-01 3 142269028 142269028 C T ATR Silent p.T974T 0.19 TCGA-ZB-A966-01 3 142431578 142431578 T - PLS1 3'UTR 0.16 TCGA-ZB-A966-01 3 14711556 14711556 T C CCDC174 Silent p.P356P 0.50 TCGA-ZB-A966-01 3 149683443 149683496 CAGGCACTGCATAAAAAAAGATGGAAGCAAACCAAATGCCTATGTGCGAAGGGA ACAGGCACTGCATAAAAAAAGATGGAAGCAAACCAAATGCCTATGTGCGAAGGGAG PFN2 3'UTR 0.10 TCGA-ZB-A966-01 3 150377915 150377915 G A FAM194A Missense_Mutation p.L586F 0.18 tolerated(0.22) benign(0.272) TCGA-ZB-A966-01 3 151461924 151461924 G A AADACL2 Silent p.T135T 0.26 TCGA-ZB-A966-01 3 153839950 153839950 G T ARHGEF26 Missense_Mutation p.G57W 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.497) TCGA-ZB-A966-01 3 155838426 155838426 C T KCNAB1 Missense_Mutation p.A9V 0.25 tolerated_low_confidence(0.78) benign(0) TCGA-ZB-A966-01 3 160560029 160560029 C T PPM1L Intron 0.20 TCGA-ZB-A966-01 3 164907221 164907221 G A SLITRK3 Silent p.N466N 0.32 TCGA-ZB-A966-01 3 168539010 168539010 T C EGFEM1P RNA 0.35 TCGA-ZB-A966-01 3 169514051 169514051 C T LRRC34 Missense_Mutation p.A339T 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-ZB-A966-01 3 179470125 179470125 T A USP13 Missense_Mutation p.F588I 0.16 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 3 180326462 180326462 T - TTC14 Intron 0.22 TCGA-ZB-A966-01 3 182661095 182661096 - A DCUN1D1 3'UTR 0.24 TCGA-ZB-A966-01 3 183209837 183209837 C T KLHL6 Missense_Mutation p.E582K 0.27 tolerated(0.78) benign(0.266) TCGA-ZB-A966-01 3 183388867 183388867 G A KLHL24 Missense_Mutation p.V424I 0.22 tolerated(0.05) possibly_damaging(0.746) TCGA-ZB-A966-01 3 183979057 183979057 G A CAMK2N2 Missense_Mutation p.P6L 0.46 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-ZB-A966-01 3 184053097 184053098 - G EIF4G1 3'UTR 0.28 TCGA-ZB-A966-01 3 184295133 184295133 C A EPHB3 Missense_Mutation p.P453T 0.18 deleterious(0) probably_damaging(0.951) TCGA-ZB-A966-01 3 185190885 185190885 G A MAP3K13 Missense_Mutation p.R589H 0.13 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 3 189681863 189681863 G A LEPREL1 Missense_Mutation p.R640C 0.19 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 3 192516279 192516280 - T MB21D2 Frame_Shift_Ins p.L458Tfs*7 0.46 TCGA-ZB-A966-01 3 19924092 19924092 G A EFHB Missense_Mutation p.R760W 0.53 deleterious(0) benign(0.058) TCGA-ZB-A966-01 3 32524469 32524469 A - CMTM6 3'UTR 0.53 TCGA-ZB-A966-01 3 37035147 37035147 G T MLH1 Nonsense_Mutation p.E37* 0.34 TCGA-ZB-A966-01 3 38307356 38307356 C T SLC22A13 Missense_Mutation p.A2V 0.30 tolerated(0.16) benign(0.008) TCGA-ZB-A966-01 3 44935086 44935086 C T TGM4 Missense_Mutation p.P150S 0.50 tolerated(0.11) benign(0.031) TCGA-ZB-A966-01 3 47142960 47142960 A G SETD2 Missense_Mutation p.F1668S 0.38 deleterious(0) benign(0.147) TCGA-ZB-A966-01 3 47315092 47315092 C - KIF9 Frame_Shift_Del p.A106Qfs*21 0.39 TCGA-ZB-A966-01 3 48465012 48465012 G A PLXNB1 Nonsense_Mutation p.R337* 0.42 TCGA-ZB-A966-01 3 50363522 50363522 G - TUSC2 3'UTR 0.30 TCGA-ZB-A966-01 3 52420699 52420699 C - DNAH1 Frame_Shift_Del p.P2946Rfs*3 0.37 TCGA-ZB-A966-01 3 52543930 52543930 G - STAB1 Frame_Shift_Del p.V800Cfs*113 0.16 TCGA-ZB-A966-01 3 52637589 52637589 T - PBRM1 Frame_Shift_Del p.K909Nfs*6 0.33 TCGA-ZB-A966-01 3 56762603 56762604 AA - ARHGEF3 3'UTR 0.43 TCGA-ZB-A966-01 3 71004978 71004979 CG - FOXP1 3'Flank 0.50 TCGA-ZB-A966-01 3 78710235 78710235 A - ROBO1 Frame_Shift_Del p.F755Lfs*28 0.27 TCGA-ZB-A966-01 3 95373487 95373487 G A MTHFD2P1 RNA 0.15 TCGA-ZB-A966-01 4 10076724 10076724 G A WDR1 3'UTR 0.37 TCGA-ZB-A966-01 4 10089931 10089931 C T WDR1 Missense_Mutation p.G235S 0.29 deleterious(0.01) probably_damaging(1) TCGA-ZB-A966-01 4 10446515 10446515 C T ZNF518B Missense_Mutation p.A480T 0.22 deleterious(0.02) benign(0.011) TCGA-ZB-A966-01 4 104510988 104510988 C T TACR3 Missense_Mutation p.D417N 0.38 tolerated(0.06) benign(0.002) TCGA-ZB-A966-01 4 113362559 113362559 A G ALPK1 3'UTR 0.56 TCGA-ZB-A966-01 4 119948376 119948376 G A SYNPO2 Silent p.V284V 0.22 TCGA-ZB-A966-01 4 123949431 123949431 A G SPATA5 Missense_Mutation p.I654V 0.16 tolerated(0.3) benign(0.004) TCGA-ZB-A966-01 4 126371577 126371578 - T FAT4 Frame_Shift_Ins p.A3138Cfs*16 0.28 TCGA-ZB-A966-01 4 140310199 140310199 A - NAA15 3'UTR 0.23 TCGA-ZB-A966-01 4 141484596 141484596 T C UCP1 Silent p.T134T 0.33 TCGA-ZB-A966-01 4 144106796 144106796 C T USP38 Silent p.L65L 0.33 TCGA-ZB-A966-01 4 157683366 157683366 C A PDGFC 3'UTR 0.33 TCGA-ZB-A966-01 4 158286456 158286456 C A GRIA2 3'UTR 0.16 TCGA-ZB-A966-01 4 164048120 164048121 TA - NAF1 3'Flank 0.25 TCGA-ZB-A966-01 4 164393092 164393092 G A TKTL2 Missense_Mutation p.R599C 0.20 deleterious(0.01) benign(0.001) TCGA-ZB-A966-01 4 164393772 164393772 T C TKTL2 Missense_Mutation p.N372S 0.21 deleterious(0.02) possibly_damaging(0.721) TCGA-ZB-A966-01 4 164449321 164449322 - A MARCH1 3'UTR 0.20 TCGA-ZB-A966-01 4 1807583 1807583 G A FGFR3 Silent p.P586P 0.22 TCGA-ZB-A966-01 4 183723524 183723524 T - TENM3 3'UTR 0.19 TCGA-ZB-A966-01 4 186515044 186515044 C - SORBS2 Frame_Shift_Del p.E1144Nfs*65 0.30 TCGA-ZB-A966-01 4 187000162 187000162 T C TLR3 Silent p.L204L 0.31 TCGA-ZB-A966-01 4 187005965 187005965 C T TLR3 Missense_Mutation p.R885W 0.31 deleterious(0) probably_damaging(0.997) TCGA-ZB-A966-01 4 20569173 20569173 C T SLIT2 Silent p.C961C 0.19 TCGA-ZB-A966-01 4 25004012 25004012 G T LGI2 3'UTR 0.33 TCGA-ZB-A966-01 4 25674846 25674846 G A SLC34A2 Missense_Mutation p.A396T 0.24 deleterious(0.01) possibly_damaging(0.746) TCGA-ZB-A966-01 4 3319272 3319272 G A RGS12 Missense_Mutation p.G459S 0.36 tolerated(0.61) benign(0.004) TCGA-ZB-A966-01 4 39826209 39826209 T - PDS5A 3'UTR 0.34 TCGA-ZB-A966-01 4 39875961 39875961 C T PDS5A Missense_Mutation p.C742Y 0.25 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 4 41746863 41746863 A - PHOX2B 3'UTR 0.25 TCGA-ZB-A966-01 4 47939172 47939172 T - CNGA1 Frame_Shift_Del p.T516Qfs*8 0.17 TCGA-ZB-A966-01 4 48485994 48485994 C T SLC10A4 Missense_Mutation p.A139V 0.26 tolerated(1) benign(0.008) TCGA-ZB-A966-01 4 48499788 48499788 A - FRYL 3'UTR 0.45 TCGA-ZB-A966-01 4 52886959 52886959 C T SGCB 3'UTR 0.30 TCGA-ZB-A966-01 4 56336954 56336954 A - CLOCK Frame_Shift_Del p.L123* 0.32 TCGA-ZB-A966-01 4 673725 673725 C T MYL5 Silent p.D70D 0.12 TCGA-ZB-A966-01 4 68379808 68379808 T - CENPC Frame_Shift_Del p.K476Nfs*38 0.23 TCGA-ZB-A966-01 4 69688085 69688085 G A UGT2B10 Missense_Mutation p.V322I 0.27 tolerated(0.2) benign(0.005) TCGA-ZB-A966-01 4 69795582 69795583 - A UGT2A3 Frame_Shift_Ins p.L511Ffs*8 0.29 TCGA-ZB-A966-01 4 73930982 73930982 C - COX18 Frame_Shift_Del p.A195Qfs*13 0.22 TCGA-ZB-A966-01 4 76568534 76568534 A - G3BP2 3'UTR 0.23 TCGA-ZB-A966-01 4 76569911 76569911 G A G3BP2 3'UTR 0.23 TCGA-ZB-A966-01 4 8609110 8609110 C - CPZ Frame_Shift_Del p.Q397Rfs*28 0.26 TCGA-ZB-A966-01 4 947094 947094 G T TMEM175 Silent p.P193P 0.40 TCGA-ZB-A966-01 4 94750382 94750382 G - ATOH1 Frame_Shift_Del p.E104Sfs*3 0.39 TCGA-ZB-A966-01 4 99393485 99393485 T - TSPAN5 3'UTR 0.50 TCGA-ZB-A966-01 5 10260992 10260992 C T CCT5 Missense_Mutation p.A321V 0.23 deleterious(0) probably_damaging(0.922) TCGA-ZB-A966-01 5 112257874 112257874 A G REEP5 Missense_Mutation p.M5T 0.22 deleterious(0) benign(0.021) TCGA-ZB-A966-01 5 120022432 120022432 T A PRR16 3'UTR 0.18 TCGA-ZB-A966-01 5 133292151 133292151 A - C5orf15 3'UTR 0.36 TCGA-ZB-A966-01 5 133727359 133727359 A G UBE2B 3'UTR 0.36 TCGA-ZB-A966-01 5 134235494 134235494 G T TXNDC15 3'UTR 0.20 TCGA-ZB-A966-01 5 135587470 135587470 G A TRPC7 Silent p.F482F 0.21 TCGA-ZB-A966-01 5 135692352 135692352 C T TRPC7 Missense_Mutation p.A242T 0.36 deleterious(0) probably_damaging(0.998) TCGA-ZB-A966-01 5 140041996 140041996 T - IK 3'UTR 0.11 TCGA-ZB-A966-01 5 140075194 140075194 C T HARS2 Silent p.G167G 0.26 TCGA-ZB-A966-01 5 140201504 140201504 G A PCDHA5 Silent p.A48A 0.30 TCGA-ZB-A966-01 5 140215417 140215417 C T PCDHA7 Silent p.D483D 0.22 TCGA-ZB-A966-01 5 140256944 140256944 C T PCDHA12 Silent p.G629G 0.25 TCGA-ZB-A966-01 5 140531055 140531055 C T PCDHB6 Missense_Mutation p.A406V 0.35 deleterious(0.04) benign(0.05) TCGA-ZB-A966-01 5 140572742 140572742 G A PCDHB10 Missense_Mutation p.G206E 0.17 deleterious_low_confidence(0.03) benign(0.001) TCGA-ZB-A966-01 5 140712134 140712134 C T PCDHGA1 Missense_Mutation p.T628M 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ZB-A966-01 5 140774369 140774369 C T PCDHGA8 Silent p.A663A 0.24 TCGA-ZB-A966-01 5 140894714 140894714 C - DIAPH1 3'UTR 0.12 TCGA-ZB-A966-01 5 1477535 1477535 G A LPCAT1 Missense_Mutation p.R295W 0.14 deleterious(0) probably_damaging(0.991) TCGA-ZB-A966-01 5 148627364 148627364 G A ABLIM3 Missense_Mutation p.R524Q 0.25 tolerated(0.39) possibly_damaging(0.895) TCGA-ZB-A966-01 5 148627430 148627430 G A ABLIM3 Missense_Mutation p.R546Q 0.17 tolerated(0.07) probably_damaging(0.928) TCGA-ZB-A966-01 5 149410301 149410301 C T HMGXB3 Intron 0.14 TCGA-ZB-A966-01 5 149756011 149756011 A G TCOF1 Missense_Mutation p.Q723R 0.13 tolerated(0.21) benign(0.101) TCGA-ZB-A966-01 5 150868209 150868209 C T SLC36A1 3'UTR 0.24 TCGA-ZB-A966-01 5 1593265 1593265 C A CTD-2012J19.3 5'Flank 0.28 TCGA-ZB-A966-01 5 163580 163580 C - PLEKHG4B Frame_Shift_Del p.P777Rfs*30 0.24 TCGA-ZB-A966-01 5 16668465 16668465 A T MYO10 Missense_Mutation p.I1999N 0.23 deleterious(0) probably_damaging(0.991) TCGA-ZB-A966-01 5 167551991 167551991 G A TENM2 Silent p.T715T 0.18 TCGA-ZB-A966-01 5 169188602 169188602 G A DOCK2 Missense_Mutation p.V843I 0.29 tolerated(0.11) benign(0.188) TCGA-ZB-A966-01 5 172561742 172561742 A - CREBRF 3'UTR 0.22 TCGA-ZB-A966-01 5 17276220 17276220 G - BASP1 3'UTR 0.25 TCGA-ZB-A966-01 5 173385887 173385887 A - CPEB4 3'UTR 0.21 TCGA-ZB-A966-01 5 176073052 176073052 C T EIF4E1B 3'UTR 0.39 TCGA-ZB-A966-01 5 179204086 179204087 TG - MAML1 3'UTR 0.18 TCGA-ZB-A966-01 5 180001746 180001746 T A CNOT6 3'UTR 0.52 TCGA-ZB-A966-01 5 180055995 180055995 A T FLT4 Missense_Mutation p.N330K 0.23 tolerated(1) benign(0) TCGA-ZB-A966-01 5 36122474 36122474 T - LMBRD2 Frame_Shift_Del p.N343Mfs*56 0.25 TCGA-ZB-A966-01 5 36984789 36984789 A - NIPBL Frame_Shift_Del p.R505Efs*35 0.22 TCGA-ZB-A966-01 5 36985729 36985729 G A NIPBL Missense_Mutation p.R816H 0.36 deleterious_low_confidence(0.02) benign(0.183) TCGA-ZB-A966-01 5 38352386 38352386 G A EGFLAM Silent p.A166A 0.16 TCGA-ZB-A966-01 5 52781017 52781017 A G FST Silent p.S304S 0.19 TCGA-ZB-A966-01 5 63257266 63257266 G A HTR1A Missense_Mutation p.A94V 0.44 tolerated(0.12) probably_damaging(1) TCGA-ZB-A966-01 5 665302 665302 C T TPPP Missense_Mutation p.R192H 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-ZB-A966-01 5 67594503 67594503 T - PIK3R1 3'UTR 0.29 TCGA-ZB-A966-01 5 68492902 68492902 A - CENPH Frame_Shift_Del p.N115Tfs*16 0.32 TCGA-ZB-A966-01 5 70805889 70805889 A - BDP1 Frame_Shift_Del p.I992Yfs*14 0.27 TCGA-ZB-A966-01 5 74657144 74657144 T - HMGCR 3'UTR 0.25 TCGA-ZB-A966-01 5 76745632 76745632 C T WDR41 Missense_Mutation p.R217H 0.25 tolerated(0.2) benign(0.052) TCGA-ZB-A966-01 5 7867769 7867769 T - FASTKD3 Frame_Shift_Del p.K143Rfs*36 0.33 TCGA-ZB-A966-01 5 80150076 80150076 A G MSH3 Missense_Mutation p.T981A 0.38 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 5 81591315 81591315 T C ATP6AP1L 5'UTR 0.21 TCGA-ZB-A966-01 5 89949478 89949478 C T GPR98 Missense_Mutation p.P1363S 0.30 probably_damaging(0.96) TCGA-ZB-A966-01 5 90050860 90050860 C T GPR98 Missense_Mutation p.A3813V 0.41 probably_damaging(0.935) TCGA-ZB-A966-01 5 93820572 93820572 A G KIAA0825 Missense_Mutation p.L345S 0.27 deleterious(0) probably_damaging(0.984) TCGA-ZB-A966-01 5 93990395 93990395 A G ANKRD32 Missense_Mutation p.K365E 0.25 tolerated(0.56) benign(0.001) TCGA-ZB-A966-01 5 95223549 95223549 T - ELL2 3'UTR 0.17 TCGA-ZB-A966-01 6 100896539 100896539 C T SIM1 Missense_Mutation p.G187S 0.21 deleterious(0) possibly_damaging(0.748) TCGA-ZB-A966-01 6 110551466 110551466 G T CDC40 3'UTR 0.25 TCGA-ZB-A966-01 6 12122183 12122183 C T HIVEP1 Missense_Mutation p.P719S 0.25 tolerated(0.16) benign(0.033) TCGA-ZB-A966-01 6 127608197 127608197 G A RNF146 Missense_Mutation p.A147T 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-ZB-A966-01 6 130425719 130425719 A G L3MBTL3 Missense_Mutation p.R629G 0.18 tolerated(0.22) benign(0.08) TCGA-ZB-A966-01 6 1314592 1314592 T C FOXQ1 3'UTR 0.25 TCGA-ZB-A966-01 6 136475266 136475266 G A PDE7B Missense_Mutation p.A178T 0.28 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 6 136934282 136934282 A G MAP3K5 Silent p.N797N 0.25 TCGA-ZB-A966-01 6 139164270 139164270 C T ECT2L Missense_Mutation p.T166M 0.09 deleterious(0) probably_damaging(0.983) TCGA-ZB-A966-01 6 143092794 143092794 G A HIVEP2 Nonsense_Mutation p.R1028* 0.39 TCGA-ZB-A966-01 6 147886523 147886523 G - SAMD5 3'UTR 0.21 TCGA-ZB-A966-01 6 150063622 150063622 C A NUP43 Missense_Mutation p.G136C 0.33 tolerated(0.21) benign(0.026) TCGA-ZB-A966-01 6 151152660 151152660 G T PLEKHG1 Missense_Mutation p.D805Y 0.29 deleterious(0.01) possibly_damaging(0.838) TCGA-ZB-A966-01 6 166825829 166825829 G A RPS6KA2 3'UTR 0.25 TCGA-ZB-A966-01 6 170117990 170117990 C T PHF10 Missense_Mutation p.R113Q 0.33 deleterious(0) possibly_damaging(0.816) TCGA-ZB-A966-01 6 24423946 24423946 T - MRS2 3'UTR 0.24 TCGA-ZB-A966-01 6 24503567 24503567 G A ALDH5A1 Missense_Mutation p.R172H 0.20 deleterious(0) probably_damaging(0.982) TCGA-ZB-A966-01 6 26413703 26413703 G A BTN3A1 Missense_Mutation p.R442Q 0.25 tolerated(0.37) benign(0.121) TCGA-ZB-A966-01 6 28212908 28212908 T - ZKSCAN4 Frame_Shift_Del p.T542Lfs*27 0.22 TCGA-ZB-A966-01 6 29394998 29394998 G A OR11A1 Missense_Mutation p.R141W 0.52 tolerated(0.36) benign(0) TCGA-ZB-A966-01 6 30570148 30570148 C A PPP1R10 Missense_Mutation p.G760C 0.35 deleterious_low_confidence(0) unknown(0) TCGA-ZB-A966-01 6 30572490 30572490 G A PPP1R10 Missense_Mutation p.T326M 0.23 tolerated(0.13) benign(0.305) TCGA-ZB-A966-01 6 30692195 30692195 A G TUBB 3'UTR 0.20 TCGA-ZB-A966-01 6 31508922 31508922 G A DDX39B Intron 0.28 TCGA-ZB-A966-01 6 31609347 31609347 G A BAG6 Missense_Mutation p.T813M 0.15 deleterious(0.03) benign(0.386) TCGA-ZB-A966-01 6 32847176 32847176 C T PPP1R2P1 RNA 0.34 TCGA-ZB-A966-01 6 33424133 33424133 G A ZBTB9 Missense_Mutation p.R419H 0.63 deleterious(0.01) probably_damaging(0.98) TCGA-ZB-A966-01 6 36711478 36711478 G A CPNE5 Silent p.R517R 0.28 TCGA-ZB-A966-01 6 36867370 36867371 - C C6orf89 Frame_Shift_Ins p.Q61Afs*10 0.42 TCGA-ZB-A966-01 6 36936715 36936715 G A MTCH1 Silent p.R361R 0.18 TCGA-ZB-A966-01 6 37664592 37664592 A G MDGA1 5'UTR 0.30 TCGA-ZB-A966-01 6 38690926 38690926 G A DNAH8 5'UTR 0.52 TCGA-ZB-A966-01 6 39033981 39033981 G A GLP1R Silent p.P137P 0.25 TCGA-ZB-A966-01 6 41712478 41712478 A G PGC Missense_Mutation p.L43P 0.22 deleterious(0) probably_damaging(0.991) TCGA-ZB-A966-01 6 41739096 41739096 G A FRS3 Missense_Mutation p.T247I 0.27 deleterious(0) benign(0.394) TCGA-ZB-A966-01 6 41752671 41752671 A T PRICKLE4 Splice_Site p.X81_splice 0.25 TCGA-ZB-A966-01 6 43572406 43572406 G A POLH Silent p.R313R 0.27 TCGA-ZB-A966-01 6 44197488 44197488 C A SLC29A1 Missense_Mutation p.L92M 0.33 deleterious(0.01) possibly_damaging(0.901) TCGA-ZB-A966-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.22 TCGA-ZB-A966-01 6 46660150 46660150 A - TDRD6 Frame_Shift_Del p.N1430Ifs*5 0.28 TCGA-ZB-A966-01 6 47681763 47681763 G A GPR115 Missense_Mutation p.S261N 0.25 tolerated(0.46) benign(0.004) TCGA-ZB-A966-01 6 49460777 49460777 T G CENPQ 3'UTR 0.39 TCGA-ZB-A966-01 6 52268691 52268691 C A PAQR8 Missense_Mutation p.P227H 0.46 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 6 52870048 52870048 T C ICK Missense_Mutation p.T600A 0.29 tolerated(0.37) benign(0.009) TCGA-ZB-A966-01 6 564069 564069 G A EXOC2 Missense_Mutation p.R585C 0.21 deleterious(0.02) possibly_damaging(0.898) TCGA-ZB-A966-01 6 56472620 56472620 T C DST Intron 0.22 TCGA-ZB-A966-01 6 64395254 64395254 C T PHF3 Missense_Mutation p.P544L 0.38 deleterious(0) possibly_damaging(0.642) TCGA-ZB-A966-01 6 70961829 70961829 C A COL9A1 Silent p.G622G 0.24 TCGA-ZB-A966-01 6 73951945 73951946 TA - KHDC1 Frame_Shift_Del p.Y116Pfs*5 0.21 TCGA-ZB-A966-01 6 74227621 74227621 G A EEF1A1 Missense_Mutation p.A434V 0.24 deleterious_low_confidence(0.01) benign(0.017) TCGA-ZB-A966-01 6 74228114 74228114 T - EEF1A1 Frame_Shift_Del p.N331Mfs*14 0.27 TCGA-ZB-A966-01 6 79770441 79770441 G T PHIP Missense_Mutation p.P95H 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-ZB-A966-01 6 86386991 86387037 ATATTGTCCTTATAACGGTCCATCTCAGAAGCCAGATCCGTAAAAGT TATTGTCCTTATAACGGTCCATCTCAGAAGCCAGATCCGTAAAAG SNHG5 Intron 0.25 TCGA-ZB-A966-01 6 87967203 87967204 - T ZNF292 Frame_Shift_Ins p.S1288Ffs*6 0.26 TCGA-ZB-A966-01 6 88318838 88318838 A - ORC3 Frame_Shift_Del p.R204Gfs*16 0.24 TCGA-ZB-A966-01 6 89890146 89890146 G A GABRR1 Silent p.R337R 0.30 TCGA-ZB-A966-01 6 90359895 90359895 G A MDN1 Nonsense_Mutation p.R5352* 0.22 TCGA-ZB-A966-01 6 96658720 96658720 C A FUT9 3'UTR 0.20 TCGA-ZB-A966-01 7 100176037 100176037 G A LRCH4 Missense_Mutation p.P278L 0.27 tolerated(0.45) probably_damaging(0.999) TCGA-ZB-A966-01 7 100205404 100205404 G A PCOLCE Missense_Mutation p.C386Y 0.33 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 7 100282727 100282727 G A GIGYF1 Missense_Mutation p.S412F 0.34 tolerated(0.08) unknown(0) TCGA-ZB-A966-01 7 100479358 100479358 C - SRRT Frame_Shift_Del p.P112Lfs*37 0.38 TCGA-ZB-A966-01 7 100731858 100731858 A - TRIM56 Frame_Shift_Del p.A424Pfs*108 0.12 TCGA-ZB-A966-01 7 100733607 100733607 A - TRIM56 3'UTR 0.31 TCGA-ZB-A966-01 7 103155797 103155797 C T RELN Missense_Mutation p.D2652N 0.50 tolerated(0.06) probably_damaging(0.993) TCGA-ZB-A966-01 7 111405191 111405192 - T DOCK4 Frame_Shift_Ins p.F1326Ifs*8 0.30 TCGA-ZB-A966-01 7 1133136 1133136 C T GPER1 3'UTR 0.38 TCGA-ZB-A966-01 7 1166957 1166957 G A C7orf50 Missense_Mutation p.A22V 0.24 tolerated(1) benign(0) TCGA-ZB-A966-01 7 120373118 120373118 A G KCND2 Missense_Mutation p.K426R 0.21 tolerated(0.27) benign(0.047) TCGA-ZB-A966-01 7 120388337 120388337 A - KCND2 3'UTR 0.42 TCGA-ZB-A966-01 7 122338557 122338557 A C RNF133 Missense_Mutation p.V139G 0.35 deleterious(0) probably_damaging(0.94) TCGA-ZB-A966-01 7 127727080 127727080 G A SND1 Missense_Mutation p.A799T 0.33 deleterious(0) probably_damaging(0.98) TCGA-ZB-A966-01 7 128588315 128588317 TCT - IRF5 In_Frame_Del p.F413del 0.21 TCGA-ZB-A966-01 7 131195725 131195725 G A PODXL Nonsense_Mutation p.R190* 0.36 TCGA-ZB-A966-01 7 135047308 135047308 T A CNOT4 3'UTR 0.39 TCGA-ZB-A966-01 7 140395526 140395526 G - ADCK2 3'Flank 0.27 TCGA-ZB-A966-01 7 142459791 142459791 G A PRSS1 Missense_Mutation p.V123M 0.49 deleterious(0) probably_damaging(0.987) TCGA-ZB-A966-01 7 148963535 148963535 C T ZNF783 Missense_Mutation p.T45M 0.41 deleterious(0.02) probably_damaging(0.967) TCGA-ZB-A966-01 7 150698994 150698994 C T NOS3 Missense_Mutation p.R530W 0.35 deleterious(0) probably_damaging(0.95) TCGA-ZB-A966-01 7 150820533 150820533 C T AGAP3 Intron 0.27 TCGA-ZB-A966-01 7 154863229 154863229 G A HTR5A Missense_Mutation p.G207D 0.33 deleterious(0.02) benign(0.394) TCGA-ZB-A966-01 7 155101126 155101126 G A INSIG1 3'UTR 0.41 TCGA-ZB-A966-01 7 158824739 158824739 G A VIPR2 Missense_Mutation p.L331F 0.24 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 7 16501775 16501775 T - SOSTDC1 3'UTR 0.33 TCGA-ZB-A966-01 7 23561888 23561888 A - TRA2A Intron 0.33 TCGA-ZB-A966-01 7 30492633 30492633 G A NOD1 Nonsense_Mutation p.R134* 0.64 TCGA-ZB-A966-01 7 36934507 36934507 C T ELMO1 Missense_Mutation p.R518H 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-ZB-A966-01 7 42004804 42004804 G A GLI3 Silent p.S1289S 0.26 TCGA-ZB-A966-01 7 43484345 43484345 G A HECW1 Missense_Mutation p.R525Q 0.18 tolerated_low_confidence(0.16) benign(0.018) TCGA-ZB-A966-01 7 4799132 4799132 G A FOXK1 Silent p.S534S 0.27 TCGA-ZB-A966-01 7 4841527 4841527 G A RADIL Missense_Mutation p.R867C 0.50 tolerated(0.06) benign(0.001) TCGA-ZB-A966-01 7 4856928 4856928 G A RADIL Missense_Mutation p.A557V 0.38 deleterious(0) possibly_damaging(0.522) TCGA-ZB-A966-01 7 50198772 50198772 C T C7orf72 3'UTR 0.25 TCGA-ZB-A966-01 7 6062967 6062967 C T AIMP2 Missense_Mutation p.T203M 0.29 tolerated(0.14) benign(0.143) TCGA-ZB-A966-01 7 72718307 72718309 TCC - NSUN5 In_Frame_Del p.E284del 0.10 TCGA-ZB-A966-01 7 72742644 72742644 G A FKBP6 Missense_Mutation p.V42I 0.50 tolerated(0.28) benign(0.01) TCGA-ZB-A966-01 7 75511247 75511247 C T RHBDD2 Silent p.T93T 0.35 TCGA-ZB-A966-01 7 77408714 77408762 ATCATTTACGTTGGAATTTTAGGTTTTAGAATAGAGCTGACATTAACAT TCATTTACGTTGGAATTTTAGGTTTTAGAATAGAGCTGACATTAAC RSBN1L 3'UTR 0.10 TCGA-ZB-A966-01 7 82581891 82581891 T G PCLO Missense_Mutation p.E2793A 0.28 unknown(0) TCGA-ZB-A966-01 7 87053299 87053299 C T ABCB4 Missense_Mutation p.V712I 0.32 tolerated(0.09) benign(0.103) TCGA-ZB-A966-01 7 90896516 90896517 - T FZD1 3'UTR 0.19 TCGA-ZB-A966-01 7 92190843 92190843 A - FAM133B 3'UTR 0.17 TCGA-ZB-A966-01 7 94924432 94924432 C T PPP1R9A 3'Flank 0.28 TCGA-ZB-A966-01 7 98259104 98259104 C T NPTX2 3'UTR 0.23 TCGA-ZB-A966-01 7 98509802 98509802 C G TRRAP Missense_Mutation p.S722C 0.32 probably_damaging(0.984) TCGA-ZB-A966-01 7 98951683 98951683 C T ARPC1A Missense_Mutation p.R218C 0.32 tolerated(0.11) benign(0.018) TCGA-ZB-A966-01 7 99091546 99091546 C T ZNF394 Missense_Mutation p.R431H 0.32 tolerated(0.12) possibly_damaging(0.746) TCGA-ZB-A966-01 7 99621354 99621354 T A ZKSCAN1 Missense_Mutation p.S75R 0.30 tolerated(0.13) benign(0.004) TCGA-ZB-A966-01 7 99905529 99905529 G T SPDYE3 Missense_Mutation p.Q7H 0.27 tolerated(1) benign(0.002) TCGA-ZB-A966-01 8 101154178 101154178 T G FBXO43 Missense_Mutation p.T102P 0.29 tolerated(0.08) benign(0.001) TCGA-ZB-A966-01 8 101232550 101232550 C T SPAG1 Missense_Mutation p.R527W 0.35 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 8 103839432 103839432 A - AZIN1 3'UTR 0.12 TCGA-ZB-A966-01 8 10756220 10756220 C T XKR6 Missense_Mutation p.V390M 0.38 deleterious(0) probably_damaging(0.982) TCGA-ZB-A966-01 8 116424053 116424053 A - TRPS1 3'UTR 0.24 TCGA-ZB-A966-01 8 117782507 117782507 C T UTP23 Nonsense_Mutation p.R89* 0.22 TCGA-ZB-A966-01 8 124219588 124219588 G A FAM83A Missense_Mutation p.S322N 0.30 tolerated(0.16) benign(0.004) TCGA-ZB-A966-01 8 131064637 131064637 G - ASAP1 3'UTR 0.29 TCGA-ZB-A966-01 8 131792569 131792569 T - ADCY8 3'UTR 0.14 TCGA-ZB-A966-01 8 135649862 135649862 G A ZFAT Missense_Mutation p.P97L 0.30 tolerated(0.17) benign(0.003) TCGA-ZB-A966-01 8 139601675 139601675 C T COL22A1 Missense_Mutation p.G1568R 0.25 unknown(0) TCGA-ZB-A966-01 8 142506590 142506590 G - MROH5 5'UTR 0.28 TCGA-ZB-A966-01 8 143399961 143399961 C T TSNARE1 Missense_Mutation p.A310T 0.31 tolerated(0.46) benign(0.018) TCGA-ZB-A966-01 8 143746582 143746582 T A JRK RNA 0.31 TCGA-ZB-A966-01 8 143784521 143784521 G A LY6K Missense_Mutation p.R77H 0.26 deleterious(0) possibly_damaging(0.866) TCGA-ZB-A966-01 8 144671269 144671269 C T EEF1D Missense_Mutation p.R328H 0.33 tolerated(0.06) benign(0.03) TCGA-ZB-A966-01 8 17087361 17087361 A G CNOT7 3'UTR 0.33 TCGA-ZB-A966-01 8 17402081 17402081 T - SLC7A2 Frame_Shift_Del p.F208Lfs*9 0.22 TCGA-ZB-A966-01 8 18413785 18413785 G - PSD3 Frame_Shift_Del p.D955Tfs*14 0.26 TCGA-ZB-A966-01 8 19277874 19277874 G A CSGALNACT1 Missense_Mutation p.T370M 0.26 deleterious(0.03) possibly_damaging(0.507) TCGA-ZB-A966-01 8 1951635 1951635 G - KBTBD11 3'UTR 0.29 TCGA-ZB-A966-01 8 23712168 23712168 T - STC1 5'UTR 0.41 TCGA-ZB-A966-01 8 25257429 25257429 T - DOCK5 Frame_Shift_Del p.F1571Lfs*19 0.23 TCGA-ZB-A966-01 8 25701747 25701747 T - EBF2 3'UTR 0.33 TCGA-ZB-A966-01 8 26227708 26227708 C T PPP2R2A Nonsense_Mutation p.R385* 0.18 TCGA-ZB-A966-01 8 26227751 26227751 G A PPP2R2A Missense_Mutation p.R399H 0.25 tolerated(0.1) benign(0.008) TCGA-ZB-A966-01 8 28645389 28645392 TGTT - INTS9 Frame_Shift_Del p.K351Rfs*22 0.16 TCGA-ZB-A966-01 8 32621338 32621338 G A NRG1 Silent p.S452S 0.38 TCGA-ZB-A966-01 8 37611633 37611633 A - ERLIN2 Frame_Shift_Del 0.30 TCGA-ZB-A966-01 8 39847306 39847306 C T IDO2 Nonsense_Mutation p.R219* 0.28 TCGA-ZB-A966-01 8 40389552 40389553 - A ZMAT4 3'UTR 0.43 TCGA-ZB-A966-01 8 48805844 48805844 G A PRKDC Silent p.G1234G 0.28 TCGA-ZB-A966-01 8 48811087 48811087 C T PRKDC Missense_Mutation p.R1136H 0.25 benign(0.336) TCGA-ZB-A966-01 8 67422332 67422332 G T C8orf46 Silent p.V94V 0.25 TCGA-ZB-A966-01 8 67772325 67772325 G A SGK3 3'UTR 0.38 TCGA-ZB-A966-01 8 72268821 72268821 A G EYA1 Intron 0.36 TCGA-ZB-A966-01 8 77775727 77775727 C T ZFHX4 Silent p.G3259G 0.17 TCGA-ZB-A966-01 8 86573859 86573859 G A REXO1L1P Missense_Mutation p.A623V 0.05 deleterious(0.02) possibly_damaging(0.823) TCGA-ZB-A966-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.20 TCGA-ZB-A966-01 8 95390551 95390552 - C RAD54B Frame_Shift_Ins p.A791Gfs*10 0.17 TCGA-ZB-A966-01 8 9634706 9634707 - T TNKS 3'UTR 0.26 TCGA-ZB-A966-01 8 99440317 99440317 G A KCNS2 Missense_Mutation p.R37H 0.33 deleterious(0) probably_damaging(0.997) TCGA-ZB-A966-01 9 101051021 101051021 T - GABBR2 3'UTR 0.33 TCGA-ZB-A966-01 9 104385644 104385644 G A GRIN3A Missense_Mutation p.A857V 0.29 deleterious(0.04) possibly_damaging(0.841) TCGA-ZB-A966-01 9 107513340 107513340 A T NIPSNAP3A Missense_Mutation p.N55I 0.13 tolerated(0.43) benign(0.014) TCGA-ZB-A966-01 9 107646762 107646762 C T ABCA1 Missense_Mutation p.R83H 0.25 tolerated(0.16) probably_damaging(0.943) TCGA-ZB-A966-01 9 108152932 108152932 T - SLC44A1 3'UTR 0.27 TCGA-ZB-A966-01 9 110093256 110093256 G - RAD23B 3'UTR 0.24 TCGA-ZB-A966-01 9 111696742 111696742 G - FAM206A 5'UTR 0.30 TCGA-ZB-A966-01 9 114089908 114089909 - T OR2K2 Frame_Shift_Ins p.I269Nfs*? 0.26 TCGA-ZB-A966-01 9 114981119 114981119 T C PTBP3 3'UTR 0.32 TCGA-ZB-A966-01 9 115652022 115652022 C T SLC46A2 Missense_Mutation p.G314S 0.46 tolerated(1) benign(0) TCGA-ZB-A966-01 9 116268675 116268675 G A RGS3 Silent p.P329P 0.26 TCGA-ZB-A966-01 9 117904 117904 G A FOXD4 Silent p.G72G 0.20 TCGA-ZB-A966-01 9 130587557 130587557 G T ENG Missense_Mutation p.P257T 0.36 tolerated(0.11) possibly_damaging(0.792) TCGA-ZB-A966-01 9 132996078 132996078 T A NCS1 3'UTR 0.38 TCGA-ZB-A966-01 9 133267461 133267461 G A HMCN2 RNA 0.13 TCGA-ZB-A966-01 9 133762999 133762999 T - ABL1 3'Flank 0.20 TCGA-ZB-A966-01 9 134354747 134354747 C A PRRC2B Missense_Mutation p.L1623M 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZB-A966-01 9 135102273 135102273 C T NTNG2 Missense_Mutation p.R299C 0.24 deleterious(0.04) possibly_damaging(0.576) TCGA-ZB-A966-01 9 136291138 136291138 C T ADAMTS13 Silent p.D165D 0.23 TCGA-ZB-A966-01 9 136310851 136310851 C T ADAMTS13 Missense_Mutation p.P881L 0.17 tolerated(0.11) benign(0.005) TCGA-ZB-A966-01 9 136628251 136628251 G A VAV2 3'UTR 0.18 TCGA-ZB-A966-01 9 138011647 138011647 G A OLFM1 Missense_Mutation p.E343K 0.29 deleterious(0) possibly_damaging(0.881) TCGA-ZB-A966-01 9 138515551 138515552 - T GLT6D1 3'UTR 0.22 TCGA-ZB-A966-01 9 139272182 139272182 G A SNAPC4 Missense_Mutation p.A1366V 0.30 tolerated(0.08) benign(0.123) TCGA-ZB-A966-01 9 139289753 139289753 G A SNAPC4 Silent p.G156G 0.29 TCGA-ZB-A966-01 9 139699024 139699026 AGA - CCDC183 In_Frame_Del p.K248del 0.33 TCGA-ZB-A966-01 9 139848225 139848225 G A LCN12 Missense_Mutation p.G109S 0.20 tolerated(0.65) benign(0.039) TCGA-ZB-A966-01 9 139911670 139911670 G A ABCA2 Missense_Mutation p.T844M 0.26 tolerated(0.08) probably_damaging(0.995) TCGA-ZB-A966-01 9 16436639 16436639 G A BNC2 Missense_Mutation p.A518V 0.31 deleterious(0.03) benign(0.069) TCGA-ZB-A966-01 9 34089566 34089566 G A DCAF12 Silent p.Y349Y 0.12 TCGA-ZB-A966-01 9 35724310 35724310 C T TLN1 Missense_Mutation p.R178Q 0.17 tolerated(0.07) probably_damaging(0.996) TCGA-ZB-A966-01 9 40789465 40789465 A G ZNF658 5'UTR 0.47 TCGA-ZB-A966-01 9 69391189 69391189 C T ANKRD20A4 Nonsense_Mutation p.R233* 0.17 TCGA-ZB-A966-01 9 74865501 74865501 T - GDA Intron 0.28 TCGA-ZB-A966-01 9 86275451 86275451 A T UBQLN1 3'UTR 0.43 TCGA-ZB-A966-01 9 90343563 90343563 A G CTSL Missense_Mutation p.K154E 0.30 deleterious(0) possibly_damaging(0.76) TCGA-ZB-A966-01 9 91994251 91994251 C T SEMA4D Missense_Mutation p.V653I 0.29 tolerated(0.42) benign(0.018) TCGA-ZB-A966-01 9 95576206 95576206 C T ANKRD19P RNA 0.31 TCGA-ZB-A966-01 9 95646205 95646205 G A RP11-526D8.7 Intron 0.34 TCGA-ZB-A966-01 9 95870091 95870091 C T C9orf89 Missense_Mutation p.A48V 0.29 deleterious(0) benign(0.059) TCGA-ZB-A966-01 9 96055012 96055012 C T WNK2 Silent p.D1792D 0.31 TCGA-ZB-A966-01 9 99122450 99122450 G A SLC35D2 Silent p.S111S 0.29 TCGA-ZB-A966-01 X 10062288 10062288 C T WWC3 Silent p.C208C 0.24 TCGA-ZB-A966-01 X 100668112 100668112 T - HNRNPH2 Frame_Shift_Del p.L381* 0.24 TCGA-ZB-A966-01 X 10104702 10104702 G A WWC3 Silent p.T931T 0.30 TCGA-ZB-A966-01 X 103495107 103495107 G A ESX1 Silent p.P341P 0.15 TCGA-ZB-A966-01 X 105970576 105970576 A G RNF128 Missense_Mutation p.I145V 0.52 tolerated(0.07) benign(0.089) TCGA-ZB-A966-01 X 107979451 107979451 C T IRS4 Missense_Mutation p.A42T 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZB-A966-01 X 108785919 108785919 G T NXT2 3'UTR 0.23 TCGA-ZB-A966-01 X 109419163 109419163 C A TMEM164 3'UTR 0.43 TCGA-ZB-A966-01 X 114425993 114425993 C T RBMXL3 Silent p.Y663Y 0.30 TCGA-ZB-A966-01 X 118217055 118217055 G A KIAA1210 Missense_Mutation p.P1626L 0.30 deleterious(0.02) benign(0.06) TCGA-ZB-A966-01 X 123047685 123047686 - T XIAP 3'UTR 0.31 TCGA-ZB-A966-01 X 130215768 130215768 C T ARHGAP36 Silent p.P43P 0.41 TCGA-ZB-A966-01 X 133905128 133905128 A - FAM122B 3'UTR 0.23 TCGA-ZB-A966-01 X 134166471 134166471 A G FAM127A Missense_Mutation p.T20A 0.08 tolerated(0.52) benign(0.001) TCGA-ZB-A966-01 X 134186034 134186034 T G FAM127B Silent p.G35G 0.14 TCGA-ZB-A966-01 X 13780494 13780494 A - OFD1 Frame_Shift_Del p.S808Vfs*9 0.26 TCGA-ZB-A966-01 X 138810504 138810505 - T ATP11C 3'UTR 0.33 TCGA-ZB-A966-01 X 139865788 139865788 C G CDR1 Missense_Mutation p.K248N 0.28 deleterious(0.02) possibly_damaging(0.607) TCGA-ZB-A966-01 X 152614121 152614121 G A ZNF275 3'UTR 0.07 TCGA-ZB-A966-01 X 152686347 152686347 G A ZFP92 Missense_Mutation p.R171H 0.40 tolerated(0.09) possibly_damaging(0.885) TCGA-ZB-A966-01 X 153186104 153186104 C T ARHGAP4 Silent p.K219K 0.28 TCGA-ZB-A966-01 X 154033630 154033630 C T MPP1 Missense_Mutation p.E7K 0.50 tolerated_low_confidence(1) benign(0.002) TCGA-ZB-A966-01 X 17080625 17080625 T A REPS2 Missense_Mutation p.N393K 0.35 tolerated(0.14) benign(0.004) TCGA-ZB-A966-01 X 18257808 18257808 T G SCML2 3'UTR 0.32 TCGA-ZB-A966-01 X 23804224 23804225 - A SAT1 3'UTR 0.23 TCGA-ZB-A966-01 X 27840014 27840014 C T MAGEB10 Silent p.G197G 0.36 TCGA-ZB-A966-01 X 2936599 2936600 - T ARSH Frame_Shift_Ins p.S266Ffs*20 0.31 TCGA-ZB-A966-01 X 30326504 30326504 C T NR0B1 Missense_Mutation p.R326Q 0.27 tolerated(0.42) benign(0.037) TCGA-ZB-A966-01 X 32834701 32834701 C A DMD Missense_Mutation p.K138N 0.19 possibly_damaging(0.902) TCGA-ZB-A966-01 X 40572273 40572273 C T MED14 Missense_Mutation p.R225H 0.27 tolerated(0.43) benign(0.022) TCGA-ZB-A966-01 X 41208177 41208177 C T DDX3X 3'UTR 0.39 TCGA-ZB-A966-01 X 46952458 46952458 G A RGN 3'UTR 0.39 TCGA-ZB-A966-01 X 48840261 48840261 G A GRIPAP1 Nonsense_Mutation p.R400* 0.19 TCGA-ZB-A966-01 X 48931616 48931616 C T PRAF2 Missense_Mutation p.A11T 0.27 tolerated(0.56) benign(0.016) TCGA-ZB-A966-01 X 50055546 50055546 C T CCNB3 Missense_Mutation p.R1113W 0.27 deleterious(0.03) benign(0) TCGA-ZB-A966-01 X 50438919 50438919 C T SHROOM4 Missense_Mutation p.A46T 0.27 deleterious(0) probably_damaging(1) TCGA-ZB-A966-01 X 53610708 53610708 G T HUWE1 Missense_Mutation p.A1777D 0.36 probably_damaging(0.972) TCGA-ZB-A966-01 X 57623610 57623610 C T ZXDB 3'UTR 0.33 TCGA-ZB-A966-01 X 69262236 69262236 C T AWAT2 Silent p.G216G 0.35 TCGA-ZB-A966-01 X 69510595 69510595 A G KIF4A Missense_Mutation p.T59A 0.16 tolerated(0.5) benign(0.019) TCGA-ZB-A966-01 X 69644872 69644872 G A GDPD2 Missense_Mutation p.R13H 0.28 tolerated(0.23) benign(0.002) TCGA-ZB-A966-01 X 69723078 69723078 T - DLG3 3'UTR 0.24 TCGA-ZB-A966-01 X 71347622 71347622 A - RGAG4 Intron 0.31 TCGA-ZB-A966-01 X 72297847 72297847 C T PABPC1L2A 3'UTR 0.15 TCGA-ZB-A966-01 X 73047136 73047136 G A XIST RNA 0.54 TCGA-ZB-A966-01 X 76762796 76762796 A G ATRX 3'UTR 0.26 TCGA-ZB-A966-01 X 76763771 76763772 - A ATRX 3'UTR 0.36 TCGA-ZB-A966-01 X 77381539 77381539 T - PGK1 3'UTR 0.20 TCGA-ZB-A966-01 X 77912087 77912087 C T ZCCHC5 3'UTR 0.29 TCGA-ZB-A966-01 X 83724352 83724352 C T HDX Missense_Mutation p.D127N 0.32 tolerated(1) benign(0.001) TCGA-ZB-A966-01 X 84526621 84526621 A - ZNF711 Frame_Shift_Del p.K693Nfs*3 0.26 TCGA-ZB-A966-01 X 8522068 8522068 G A KAL1 Missense_Mutation p.R427C 0.36 tolerated(0.06) benign(0.013) TCGA-ZB-A969-01 11 120957785 120957785 G A TBCEL Missense_Mutation p.V419M 0.40 deleterious(0) probably_damaging(0.999) TCGA-ZB-A969-01 11 64563812 64563812 G A MAP4K2 Missense_Mutation p.R562W 0.38 deleterious(0.02) probably_damaging(0.989) TCGA-ZB-A969-01 12 123706353 123706356 TTGT - MPHOSPH9 5'UTR 0.35 TCGA-ZB-A969-01 12 130185157 130185157 C T TMEM132D Missense_Mutation p.A56T 0.32 tolerated(0.09) benign(0.08) TCGA-ZB-A969-01 12 46753717 46753718 AT - SLC38A2 3'UTR 0.32 TCGA-ZB-A969-01 13 102227854 102227854 C T ITGBL1 Silent p.D181D 0.42 TCGA-ZB-A969-01 13 45008002 45008003 AA T TSC22D1 3'UTR 0.40 TCGA-ZB-A969-01 14 64937456 64937456 A G AKAP5 3'UTR 0.40 TCGA-ZB-A969-01 17 52978127 52978127 G A TOM1L1 5'UTR 0.11 TCGA-ZB-A969-01 17 62018827 62018827 T C SCN4A Silent p.T1605T 0.11 TCGA-ZB-A969-01 17 76045266 76045266 A G TNRC6C Silent p.G41G 0.12 TCGA-ZB-A969-01 17 79661993 79661993 C A HGS Missense_Mutation p.Q339K 0.07 tolerated(0.35) possibly_damaging(0.761) TCGA-ZB-A969-01 19 37903959 37903959 A G ZNF569 Missense_Mutation p.I534T 0.38 tolerated(0.29) probably_damaging(0.985) TCGA-ZB-A969-01 19 42584756 42584756 C G ZNF574 Silent p.R666R 0.65 TCGA-ZB-A969-01 19 4324147 4324147 G A STAP2 Missense_Mutation p.R445W 0.06 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-ZB-A969-01 19 5591761 5591761 G C SAFB2 Missense_Mutation p.Q798E 0.52 deleterious(0.02) benign(0.004) TCGA-ZB-A969-01 19 5787673 5787673 A G DUS3L Missense_Mutation p.L380P 0.32 deleterious(0) probably_damaging(0.997) TCGA-ZB-A969-01 19 58152709 58152709 T C ZNF211 Silent p.Y350Y 0.27 TCGA-ZB-A969-01 1 103343335 103343335 T C COL11A1 3'UTR 0.49 TCGA-ZB-A969-01 1 118166566 118166566 C T FAM46C Missense_Mutation p.P359L 0.31 deleterious(0) probably_damaging(0.997) TCGA-ZB-A969-01 1 25655528 25655528 C T RHD 3'UTR 0.46 TCGA-ZB-A969-01 1 66384468 66384468 G AAA PDE4B Frame_Shift_Ins p.P78Nfs*3 0.20 TCGA-ZB-A969-01 21 30699208 30699208 G A BACH1 Missense_Mutation p.D355N 0.47 tolerated(0.44) benign(0.002) TCGA-ZB-A969-01 21 30699241 30699241 G A BACH1 Missense_Mutation p.D366N 0.41 tolerated(0.11) benign(0.008) TCGA-ZB-A969-01 21 30699274 30699274 G T BACH1 Nonsense_Mutation p.E377* 0.45 TCGA-ZB-A969-01 21 30699313 30699313 G C BACH1 Missense_Mutation p.E390Q 0.45 deleterious(0) probably_damaging(0.994) TCGA-ZB-A969-01 21 30699589 30699589 G C BACH1 Missense_Mutation p.D482H 0.50 deleterious(0) benign(0.153) TCGA-ZB-A969-01 21 30699649 30699649 G A BACH1 Missense_Mutation p.D502N 0.44 deleterious(0) possibly_damaging(0.783) TCGA-ZB-A969-01 21 30699664 30699664 G C BACH1 Missense_Mutation p.D507H 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-ZB-A969-01 21 30699682 30699682 G A BACH1 Missense_Mutation p.E513K 0.52 deleterious(0) probably_damaging(0.989) TCGA-ZB-A969-01 22 20717917 20717917 G A USP41 Silent p.H357H 0.24 TCGA-ZB-A969-01 22 21327668 21327668 G A AIFM3 Missense_Mutation p.G35D 0.06 deleterious_low_confidence(0.01) benign(0.125) TCGA-ZB-A969-01 22 39781293 39781293 C A SYNGR1 3'UTR 0.53 TCGA-ZB-A969-01 2 157184975 157184975 C T NR4A2 Missense_Mutation p.R312Q 0.43 deleterious(0.01) probably_damaging(1) TCGA-ZB-A969-01 2 74726543 74726543 G C LBX2 Intron 0.36 TCGA-ZB-A969-01 3 122288784 122288791 TTTCACTG - DTX3L Frame_Shift_Del p.T618Kfs*8 0.29 TCGA-ZB-A969-01 3 170185016 170185016 C T SLC7A14 Missense_Mutation p.E715K 0.24 tolerated(0.24) benign(0.001) TCGA-ZB-A969-01 3 52858575 52858575 C A ITIH4 Nonsense_Mutation p.E295* 0.35 TCGA-ZB-A969-01 5 13916560 13916560 G A DNAH5 Missense_Mutation p.S365F 0.48 possibly_damaging(0.788) TCGA-ZB-A969-01 6 168708585 168708585 G C DACT2 Missense_Mutation p.R618G 0.29 deleterious(0) possibly_damaging(0.796) TCGA-ZB-A969-01 7 117386124 117386124 G A CTTNBP2 Silent p.H1126H 0.06 TCGA-ZB-A969-01 7 1785871 1785871 G T ELFN1 Missense_Mutation p.D547Y 0.38 deleterious(0) possibly_damaging(0.838) TCGA-ZB-A969-01 7 34978947 34978947 A G DPY19L1 Silent p.V562V 0.41 TCGA-ZB-A969-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.39 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A969-01 9 96052266 96052266 A G WNK2 Missense_Mutation p.K1662E 0.50 unknown(0) TCGA-ZB-A969-01 X 109698849 109698849 A G RGAG1 3'UTR 0.40 TCGA-ZB-A969-01 X 129519407 129519407 G T GPR119 Missense_Mutation p.F5L 0.45 tolerated(0.33) benign(0.003) TCGA-ZB-A969-01 X 152685753 152685753 C T ZFP92 Silent p.D76D 0.09 TCGA-ZB-A969-01 X 5947401 5947401 C A NLGN4X Missense_Mutation p.G182V 0.33 deleterious(0) probably_damaging(0.993) TCGA-ZB-A969-01 X 67943847 67943847 G A STARD8 Silent p.P1026P 0.48 TCGA-ZB-A96A-01 11 65315539 65315539 C T LTBP3 Intron 0.08 TCGA-ZB-A96A-01 11 65780794 65780794 C T CST6 Missense_Mutation p.R125C 0.09 tolerated(0.15) benign(0.133) TCGA-ZB-A96A-01 11 73388783 73388783 A T RAB6A 3'UTR 0.07 TCGA-ZB-A96A-01 12 58019923 58019923 C T SLC26A10 3'Flank 0.15 TCGA-ZB-A96A-01 14 68217762 68217762 C T ZFYVE26 Intron 0.12 TCGA-ZB-A96A-01 16 1884288 1884288 C T MEIOB Missense_Mutation p.S462N 0.05 tolerated(0.17) possibly_damaging(0.69) TCGA-ZB-A96A-01 17 76201825 76201825 C T AFMID Silent p.L262L 0.14 TCGA-ZB-A96A-01 19 44529568 44529568 C G ZNF222 5'UTR 0.09 TCGA-ZB-A96A-01 19 9489731 9489731 A G ZNF177 Missense_Mutation p.M43V 0.23 deleterious(0) benign(0.121) TCGA-ZB-A96A-01 1 1222276 1222276 C T SCNN1D Missense_Mutation p.P347L 0.22 deleterious(0.05) benign(0.021) TCGA-ZB-A96A-01 1 153933081 153933081 C T SLC39A1 Silent p.P156P 0.12 TCGA-ZB-A96A-01 1 28785623 28785623 C T PHACTR4 Missense_Mutation p.P25L 0.12 deleterious(0.03) benign(0.012) TCGA-ZB-A96A-01 1 66732391 66732391 G T PDE4B Intron 0.22 TCGA-ZB-A96A-01 20 42265866 42265866 G A IFT52 Missense_Mutation p.A365T 0.17 tolerated(0.23) benign(0.003) TCGA-ZB-A96A-01 22 50968040 50968040 G C TYMP Silent p.P33P 0.07 TCGA-ZB-A96A-01 2 73675362 73675362 G A ALMS1 Missense_Mutation p.V569I 0.07 benign(0.219) TCGA-ZB-A96A-01 2 85771763 85771763 G A MAT2A 3'UTR 0.15 TCGA-ZB-A96A-01 2 95773940 95773940 G - MRPS5 Frame_Shift_Del p.P206Lfs*20 0.12 TCGA-ZB-A96A-01 4 186435918 186435918 T C PDLIM3 Intron 0.07 TCGA-ZB-A96A-01 4 6473936 6473936 C T PPP2R2C Silent p.T7T 0.06 TCGA-ZB-A96A-01 6 13978363 13978363 C T RNF182 3'UTR 0.11 TCGA-ZB-A96A-01 6 52619822 52619822 T C GSTA2 Missense_Mutation p.K64R 0.04 tolerated(0.11) benign(0.018) TCGA-ZB-A96A-01 6 76343306 76343306 C A SENP6 Silent p.R73R 0.07 TCGA-ZB-A96A-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.09 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96A-01 8 144947314 144947314 G - EPPK1 Frame_Shift_Del p.R37Gfs*7 0.08 TCGA-ZB-A96A-01 X 118739696 118739696 G A NKRF Intron 0.09 TCGA-ZB-A96A-01 X 78618443 78618445 TCA CC ITM2A Frame_Shift_Del p.F145Lfs*5 0.25 TCGA-ZB-A96B-01 1 185126088 185126088 C T TRMT1L 5'UTR 0.10 TCGA-ZB-A96B-01 1 237550618 237550618 C T RYR2 Missense_Mutation p.A205V 0.08 benign(0.047) TCGA-ZB-A96B-01 2 132021562 132021562 C A POTEE Missense_Mutation p.S845Y 0.07 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ZB-A96B-01 2 44102286 44102286 T C ABCG8 Missense_Mutation p.I497T 0.10 deleterious(0.02) possibly_damaging(0.697) TCGA-ZB-A96B-01 6 16328368 16328368 C T ATXN1 Silent p.G58G 0.07 TCGA-ZB-A96B-01 6 32821212 32821212 G T TAP1 Missense_Mutation p.L128I 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-ZB-A96B-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.04 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96B-01 9 135668042 135668042 C T AK8 Missense_Mutation p.R367H 0.10 deleterious(0.05) benign(0.184) TCGA-ZB-A96C-01 11 118527694 118527694 A G PHLDB1 3'UTR 0.50 TCGA-ZB-A96C-01 11 123676667 123676667 T C OR6M1 Missense_Mutation p.T131A 0.36 tolerated(0.53) benign(0.001) TCGA-ZB-A96C-01 11 62554169 62554169 G T TAF6L Missense_Mutation p.G424W 0.19 deleterious(0.01) probably_damaging(0.919) TCGA-ZB-A96C-01 11 62744854 62744854 G T SLC22A6 Missense_Mutation p.T456K 0.56 deleterious(0.01) possibly_damaging(0.472) TCGA-ZB-A96C-01 11 73008794 73008794 G T P2RY6 3'UTR 0.46 TCGA-ZB-A96C-01 11 73008795 73008795 A T P2RY6 3'UTR 0.46 TCGA-ZB-A96C-01 12 76741446 76741446 G A BBS10 Missense_Mutation p.P107S 0.29 tolerated(1) benign(0.001) TCGA-ZB-A96C-01 12 81688794 81688794 C T PPFIA2 Silent p.A915A 0.39 TCGA-ZB-A96C-01 13 23913409 23913409 C A SACS Missense_Mutation p.V1536L 0.44 benign(0.001) TCGA-ZB-A96C-01 16 89936636 89936636 C T SPIRE2 Nonsense_Mutation p.Q701* 0.44 TCGA-ZB-A96C-01 17 36882608 36882609 GT - MLLT6 3'UTR 0.32 TCGA-ZB-A96C-01 19 36230713 36230713 G T IGFLR1 Missense_Mutation p.P207T 0.57 tolerated(0.78) benign(0.005) TCGA-ZB-A96C-01 1 110453377 110453377 G A CSF1 5'UTR 0.06 TCGA-ZB-A96C-01 1 16785395 16785395 G A NECAP2 Silent p.T242T 0.11 TCGA-ZB-A96C-01 1 70385486 70385486 C T LRRC7 Intron 0.26 TCGA-ZB-A96C-01 20 2730141 2730141 C T EBF4 Missense_Mutation p.A241V 0.47 deleterious(0.02) possibly_damaging(0.636) TCGA-ZB-A96C-01 20 50221408 50221408 C G ATP9A Silent p.L985L 0.32 TCGA-ZB-A96C-01 2 219870259 219870259 T G CCDC108 Silent p.R1650R 0.33 TCGA-ZB-A96C-01 2 220164896 220164896 G C PTPRN Missense_Mutation p.P416R 0.59 deleterious(0.05) benign(0.009) TCGA-ZB-A96C-01 2 237246856 237246856 G T IQCA1 Missense_Mutation p.S709Y 0.38 deleterious(0) possibly_damaging(0.821) TCGA-ZB-A96C-01 3 126749087 126749087 G T PLXNA1 Missense_Mutation p.G1688V 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-ZB-A96C-01 3 193855974 193855974 C G HES1 Missense_Mutation p.S265R 0.43 tolerated(0.14) benign(0.002) TCGA-ZB-A96C-01 3 63953540 63953540 C T ATXN7 Intron 0.17 TCGA-ZB-A96C-01 5 7414865 7414865 C T ADCY2 Silent p.T130T 0.07 TCGA-ZB-A96C-01 6 10626876 10626876 G A GCNT2 3'UTR 0.27 TCGA-ZB-A96C-01 6 108582193 108582193 C T SNX3 5'UTR 0.12 TCGA-ZB-A96C-01 6 1102397 1102397 C G AL033381.1 Missense_Mutation p.F127L 0.12 benign(0.302) TCGA-ZB-A96C-01 6 28097443 28097443 C T ZSCAN16 Silent p.H254H 0.54 TCGA-ZB-A96C-01 6 76022744 76022744 A G FILIP1 Missense_Mutation p.F935S 0.37 tolerated(0.34) benign(0.147) TCGA-ZB-A96C-01 7 126542678 126542678 C A GRM8 Missense_Mutation p.W358C 0.08 deleterious(0) probably_damaging(0.921) TCGA-ZB-A96C-01 7 150174636 150174636 G A GIMAP8 Missense_Mutation p.R589H 0.04 tolerated(0.11) benign(0.248) TCGA-ZB-A96C-01 7 20691082 20691082 C T ABCB5 Missense_Mutation p.R458W 0.14 deleterious(0.01) possibly_damaging(0.828) TCGA-ZB-A96C-01 7 2565349 2565349 G A LFNG Missense_Mutation p.G256S 0.14 deleterious(0.01) probably_damaging(1) TCGA-ZB-A96C-01 7 30695595 30695595 T A CRHR2 Missense_Mutation p.I316F 0.14 deleterious(0) probably_damaging(0.986) TCGA-ZB-A96C-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.39 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96C-01 8 54141705 54141705 T A OPRK1 3'UTR 0.43 TCGA-ZB-A96C-01 9 139750227 139750227 C T MAMDC4 Silent p.D505D 0.26 TCGA-ZB-A96C-01 X 148692970 148692970 C T TMEM185A Missense_Mutation p.R72Q 0.39 deleterious(0) probably_damaging(0.974) TCGA-ZB-A96C-01 X 22129592 22129592 G A PHEX Missense_Mutation p.A363T 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-ZB-A96C-01 X 3235593 3235593 C G MXRA5 Silent p.A2043A 0.43 TCGA-ZB-A96C-01 X 38146390 38146390 T C RPGR Missense_Mutation p.E621G 0.38 benign(0.204) TCGA-ZB-A96C-01 X 53106206 53106206 A G GPR173 Missense_Mutation p.M135V 0.62 tolerated(0.26) benign(0.05) TCGA-ZB-A96C-01 X 70466293 70466293 G A ZMYM3 Missense_Mutation p.R828C 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-ZB-A96D-01 11 61106886 61106886 C T DAK Silent p.C155C 0.12 TCGA-ZB-A96D-01 12 109016946 109016946 C T SELPLG Missense_Mutation p.A396T 0.21 deleterious(0.03) possibly_damaging(0.79) TCGA-ZB-A96D-01 12 110252474 110252474 T C TRPV4 Missense_Mutation p.E43G 0.06 deleterious_low_confidence(0) benign(0.303) TCGA-ZB-A96D-01 15 62167977 62167977 C G VPS13C Missense_Mutation p.R3431T 0.05 deleterious(0) probably_damaging(0.999) TCGA-ZB-A96D-01 15 83332683 83332683 A G AP3B2 Missense_Mutation p.V750A 0.31 tolerated(0.76) benign(0.153) TCGA-ZB-A96D-01 17 72428280 72428280 G A GPRC5C Missense_Mutation p.G35R 0.17 tolerated_low_confidence(0.31) benign(0.007) TCGA-ZB-A96D-01 19 11224350 11224350 G A LDLR Missense_Mutation p.V500I 0.20 deleterious(0.01) benign(0.337) TCGA-ZB-A96D-01 19 47569869 47569869 T C ZC3H4 Missense_Mutation p.N1219S 0.13 unknown(0) TCGA-ZB-A96D-01 1 196438174 196438174 G A KCNT2 Nonsense_Mutation p.R137* 0.07 TCGA-ZB-A96D-01 1 228112027 228112027 C T WNT9A Missense_Mutation p.A143T 0.08 tolerated(0.11) possibly_damaging(0.868) TCGA-ZB-A96D-01 1 23650155 23650155 G A HNRNPR Missense_Mutation p.P190L 0.07 tolerated(0.09) benign(0.061) TCGA-ZB-A96D-01 20 33588848 33588848 C T MYH7B Missense_Mutation p.R1830W 0.14 probably_damaging(0.996) TCGA-ZB-A96D-01 22 46806417 46806417 G T CELSR1 Missense_Mutation p.P1604H 0.17 deleterious(0) probably_damaging(1) TCGA-ZB-A96D-01 22 50715077 50715077 T A PLXNB2 Missense_Mutation p.H1773L 0.12 tolerated(0.23) possibly_damaging(0.661) TCGA-ZB-A96D-01 2 21225240 21225240 G C APOB Missense_Mutation p.L4352V 0.10 benign(0.07) TCGA-ZB-A96D-01 3 29941238 29941238 C T RBMS3 Nonsense_Mutation p.Q311* 0.10 TCGA-ZB-A96D-01 4 170016171 170016171 T C SH3RF1 3'UTR 0.11 TCGA-ZB-A96D-01 5 110405924 110405924 G T TSLP 5'Flank 0.31 TCGA-ZB-A96D-01 5 168189571 168189571 C A SLIT3 Missense_Mutation p.S528I 0.17 deleterious(0.05) benign(0.305) TCGA-ZB-A96D-01 5 175528581 175528581 G A FAM153B Missense_Mutation p.E144K 0.06 tolerated_low_confidence(0.78) benign(0.274) TCGA-ZB-A96D-01 7 5541579 5541579 C T FBXL18 Silent p.L107L 0.09 TCGA-ZB-A96D-01 7 6838757 6838757 C A CCZ1B 3'UTR 0.14 TCGA-ZB-A96D-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.09 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96D-01 X 149931163 149931163 G A MTMR1 Silent p.S653S 0.14 TCGA-ZB-A96E-01 11 105623710 105623710 G A GRIA4 Missense_Mutation p.C84Y 0.10 deleterious(0) probably_damaging(1) TCGA-ZB-A96E-01 11 16809631 16809631 A G PLEKHA7 3'UTR 0.22 TCGA-ZB-A96E-01 11 28232675 28232675 A G METTL15 Missense_Mutation p.I113V 0.06 tolerated(0.45) benign(0.02) TCGA-ZB-A96E-01 11 3383014 3383014 C T ZNF195 Missense_Mutation p.R111H 0.17 tolerated(0.13) benign(0) TCGA-ZB-A96E-01 11 46671828 46671828 T G ATG13 Missense_Mutation p.L140R 0.09 deleterious(0) probably_damaging(0.996) TCGA-ZB-A96E-01 11 534284 534285 - CCG HRAS In_Frame_Ins p.G13dup 0.24 TCGA-ZB-A96E-01 11 609650 609650 C T PHRF1 Silent p.A1397A 0.17 TCGA-ZB-A96E-01 11 64806133 64806133 G A SNX15 Missense_Mutation p.G252R 0.11 deleterious(0.04) probably_damaging(0.974) TCGA-ZB-A96E-01 12 4714232 4714232 C T DYRK4 Nonsense_Mutation p.Q312* 0.32 TCGA-ZB-A96E-01 13 53608550 53608550 A G OLFM4 Missense_Mutation p.D91G 0.29 deleterious(0.01) probably_damaging(0.91) TCGA-ZB-A96E-01 16 19883616 19883616 G A GPRC5B Silent p.T184T 0.07 TCGA-ZB-A96E-01 16 67670755 67670755 G T CTCF Splice_Site p.X667_splice 0.21 TCGA-ZB-A96E-01 17 56429513 56429515 AAC - SUPT4H1 5'UTR 0.23 TCGA-ZB-A96E-01 17 73590629 73590629 C T MYO15B 5'Flank 0.25 TCGA-ZB-A96E-01 19 38954458 38954458 C A RYR1 Missense_Mutation p.N918K 0.28 probably_damaging(0.986) TCGA-ZB-A96E-01 19 58773097 58773097 T G ZNF544 Silent p.T375T 0.27 TCGA-ZB-A96E-01 1 11158195 11158195 C A EXOSC10 Missense_Mutation p.V44L 0.23 tolerated(0.44) benign(0.052) TCGA-ZB-A96E-01 1 17592171 17592171 G T PADI3 Missense_Mutation p.D122Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-ZB-A96E-01 1 224002053 224002053 G A TP53BP2 Missense_Mutation p.R60C 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZB-A96E-01 1 46165728 46165728 T A IPP Silent p.S555S 0.08 TCGA-ZB-A96E-01 21 45550680 45550680 T C PWP2 3'UTR 0.17 TCGA-ZB-A96E-01 2 208631288 208631288 A T FZD5 3'UTR 0.06 TCGA-ZB-A96E-01 2 219222319 219222320 GA T C2orf62 Frame_Shift_Del p.E61Cfs*6 0.09 TCGA-ZB-A96E-01 2 96789835 96789835 G A ASTL Silent p.A350A 0.22 TCGA-ZB-A96E-01 3 11383645 11383645 G T ATG7 Silent p.L339L 0.21 TCGA-ZB-A96E-01 3 11383646 11383646 A T ATG7 Missense_Mutation p.M340L 0.20 deleterious(0) possibly_damaging(0.615) TCGA-ZB-A96E-01 3 37154409 37154409 T A LRRFIP2 Silent p.L145L 0.12 TCGA-ZB-A96E-01 5 174164 174164 G A PLEKHG4B Nonsense_Mutation p.W1095* 0.11 TCGA-ZB-A96E-01 6 46849840 46849840 C T GPR116 Missense_Mutation p.R206Q 0.08 tolerated(0.62) benign(0.007) TCGA-ZB-A96E-01 6 55039563 55039563 G T HCRTR2 Missense_Mutation p.G60W 0.21 deleterious(0.02) possibly_damaging(0.785) TCGA-ZB-A96E-01 7 134576246 134576246 A G CALD1 Intron 0.18 TCGA-ZB-A96E-01 7 30491267 30491267 T C NOD1 Missense_Mutation p.N589S 0.09 tolerated(0.1) probably_damaging(0.993) TCGA-ZB-A96E-01 7 66461921 66461921 G T TYW1 5'UTR 0.15 TCGA-ZB-A96E-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.16 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96E-01 8 116631929 116631929 C A TRPS1 Silent p.G132G 0.09 TCGA-ZB-A96E-01 8 143399940 143399940 T C TSNARE1 Missense_Mutation p.K317E 0.20 deleterious(0.01) possibly_damaging(0.637) TCGA-ZB-A96E-01 9 74481855 74481855 C A ABHD17B Missense_Mutation p.D239Y 0.11 deleterious(0) probably_damaging(0.934) TCGA-ZB-A96E-01 X 151935507 151935507 T A MAGEA3 Missense_Mutation p.K220N 0.27 tolerated(0.21) benign(0.288) TCGA-ZB-A96E-01 X 39911578 39911589 AAAATTGCAGCG C BCOR Frame_Shift_Del p.R1681Afs*35 0.32 TCGA-ZB-A96E-01 X 40996178 40996178 T - USP9X Frame_Shift_Del p.I186Tfs*36 0.26 TCGA-ZB-A96E-01 X 56590760 56590760 G C UBQLN2 Missense_Mutation p.A152P 0.17 tolerated(0.23) probably_damaging(0.942) TCGA-ZB-A96F-01 11 66329612 66329612 C T CTSF 3'Flank 0.16 TCGA-ZB-A96F-01 12 115109825 115109825 C T TBX3 Missense_Mutation p.A685T 0.12 tolerated(0.36) benign(0.007) TCGA-ZB-A96F-01 12 130935797 130935797 G A RIMBP2 Silent p.S132S 0.15 TCGA-ZB-A96F-01 13 32921032 32921032 C T BRCA2 Missense_Mutation p.R2336C 0.15 tolerated(1) benign(0) TCGA-ZB-A96F-01 15 74883596 74883596 C G ARID3B Missense_Mutation p.P329R 0.15 deleterious(0.01) probably_damaging(1) TCGA-ZB-A96F-01 16 56918063 56918063 T A SLC12A3 Missense_Mutation p.I591N 0.18 deleterious(0) probably_damaging(0.953) TCGA-ZB-A96F-01 16 712780 712780 C T WDR90 Missense_Mutation p.T1416M 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-ZB-A96F-01 16 87723875 87723875 C T JPH3 Missense_Mutation p.R637W 0.14 deleterious(0) benign(0.425) TCGA-ZB-A96F-01 17 7311935 7311935 G A NLGN2 Missense_Mutation p.V121M 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-ZB-A96F-01 17 79596825 79596825 G A NPLOC4 Missense_Mutation p.R8C 0.20 deleterious(0) probably_damaging(1) TCGA-ZB-A96F-01 19 41029463 41029463 C G SPTBN4 Silent p.A1258A 0.20 TCGA-ZB-A96F-01 19 58361288 58361288 T G ZNF587 5'UTR 0.07 TCGA-ZB-A96F-01 1 21042031 21042031 T C KIF17 Silent p.R111R 0.19 TCGA-ZB-A96F-01 1 248844765 248844765 G A OR14I1 Missense_Mutation p.P281S 0.16 deleterious(0.02) probably_damaging(0.99) TCGA-ZB-A96F-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.21 deleterious(0) probably_damaging(0.96) TCGA-ZB-A96F-01 3 123813741 123813741 G A KALRN Silent p.L19L 0.36 TCGA-ZB-A96F-01 3 52620451 52620451 T C PBRM1 Missense_Mutation p.N1101S 0.09 tolerated(0.41) possibly_damaging(0.486) TCGA-ZB-A96F-01 4 119606721 119606721 G A METTL14 Missense_Mutation p.R11Q 0.06 deleterious_low_confidence(0.05) unknown(0) TCGA-ZB-A96F-01 4 154217088 154217088 C T TRIM2 Silent p.S470S 0.08 TCGA-ZB-A96F-01 5 66458457 66458457 C T MAST4 Silent p.L1270L 0.15 TCGA-ZB-A96F-01 7 142659379 142659379 G A KEL 5'UTR 0.17 TCGA-ZB-A96F-01 7 149169983 149169983 C A ZNF746 3'UTR 0.15 TCGA-ZB-A96F-01 8 145663936 145663936 C T TONSL Missense_Mutation p.R524Q 0.14 tolerated(0.09) possibly_damaging(0.81) TCGA-ZB-A96F-01 8 38677775 38677775 C A TACC1 Missense_Mutation p.P338Q 0.09 deleterious(0) possibly_damaging(0.786) TCGA-ZB-A96F-01 9 116183409 116183409 G A C9orf43 Silent p.T124T 0.12 TCGA-ZB-A96F-01 X 48326271 48326271 G A SLC38A5 Missense_Mutation p.S14L 0.16 tolerated(0.06) benign(0.001) TCGA-ZB-A96G-01 11 57076782 57076782 C T TNKS1BP1 Missense_Mutation p.A1135T 0.12 tolerated(0.19) possibly_damaging(0.719) TCGA-ZB-A96G-01 12 54756503 54756503 C T GPR84 Missense_Mutation p.R378H 0.08 deleterious(0.04) probably_damaging(0.994) TCGA-ZB-A96G-01 14 64453318 64453318 A G SYNE2 Missense_Mutation p.M766V 0.07 benign(0.001) TCGA-ZB-A96G-01 19 18726791 18726791 G A TMEM59L Missense_Mutation p.V139I 0.08 tolerated(0.18) benign(0.034) TCGA-ZB-A96G-01 19 55998555 55998555 G A NAT14 3'UTR 0.24 TCGA-ZB-A96G-01 1 67896030 67896030 G A SERBP1 5'UTR 0.10 TCGA-ZB-A96G-01 21 45945637 45945637 T C TSPEAR Missense_Mutation p.K412R 0.09 tolerated(0.77) benign(0.02) TCGA-ZB-A96G-01 7 94953829 94953829 C T PON1 5'UTR 0.09 TCGA-ZB-A96G-01 9 116835250 116835250 C T AMBP Missense_Mutation p.G171S 0.14 tolerated(0.56) benign(0.078) TCGA-ZB-A96G-01 9 125621159 125621159 T C RC3H2 Missense_Mutation p.Y691C 0.08 deleterious(0) probably_damaging(0.993) TCGA-ZB-A96G-01 9 32633957 32633957 A T TAF1L Missense_Mutation p.S541T 0.09 tolerated(0.48) benign(0.005) TCGA-ZB-A96H-01 10 95097618 95097618 T C MYOF Missense_Mutation p.H1464R 0.08 tolerated(0.81) benign(0.017) TCGA-ZB-A96H-01 11 75279804 75279804 G T SERPINH1 Missense_Mutation p.K217N 0.14 tolerated(0.05) possibly_damaging(0.624) TCGA-ZB-A96H-01 11 75316660 75316660 C T MAP6 Intron 0.10 TCGA-ZB-A96H-01 12 109181353 109181353 C T SSH1 3'UTR 0.15 TCGA-ZB-A96H-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.43 deleterious(0) benign(0.361) TCGA-ZB-A96H-01 12 56386618 56386618 G C RAB5B 3'UTR 0.11 TCGA-ZB-A96H-01 14 39512039 39512039 C G SEC23A Missense_Mutation p.R646P 0.44 deleterious(0.02) probably_damaging(0.959) TCGA-ZB-A96H-01 14 91338017 91338017 G T RPS6KA5 3'UTR 0.19 TCGA-ZB-A96H-01 17 16706129 16706129 A G CCDC144A 3'UTR 0.20 TCGA-ZB-A96H-01 18 67563024 67563024 C G CD226 Missense_Mutation p.V214L 0.45 deleterious(0.04) benign(0.03) TCGA-ZB-A96H-01 1 19653802 19653802 G A PQLC2 Missense_Mutation p.V234M 0.32 deleterious(0) probably_damaging(0.989) TCGA-ZB-A96H-01 1 203013110 203013110 C T PPFIA4 Missense_Mutation p.R130W 0.08 deleterious(0) probably_damaging(1) TCGA-ZB-A96H-01 1 20518307 20518307 A T UBXN10 3'UTR 0.47 TCGA-ZB-A96H-01 1 226453952 226453952 G A LIN9 Missense_Mutation p.R316W 0.43 deleterious(0) possibly_damaging(0.899) TCGA-ZB-A96H-01 20 62730015 62730015 T C OPRL1 Missense_Mutation p.F326L 0.60 deleterious(0) probably_damaging(0.986) TCGA-ZB-A96H-01 22 39627692 39627692 A G PDGFB Missense_Mutation p.S131P 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZB-A96H-01 2 159530414 159530414 A G PKP4 Missense_Mutation p.H1010R 0.12 deleterious(0.05) probably_damaging(0.917) TCGA-ZB-A96H-01 2 32477618 32477618 C A NLRC4 Missense_Mutation p.E44D 0.35 deleterious(0.04) benign(0.346) TCGA-ZB-A96H-01 4 68488877 68488877 G - UBA6 Frame_Shift_Del p.L969Wfs*4 0.15 TCGA-ZB-A96H-01 5 110074966 110074966 T G SLC25A46 Missense_Mutation p.I49S 0.46 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-ZB-A96H-01 5 140537253 140537253 T G PCDHB17 Silent p.T559T 0.08 TCGA-ZB-A96H-01 5 169310184 169310184 C T FAM196B Missense_Mutation p.R240H 0.52 tolerated(0.6) benign(0.08) TCGA-ZB-A96H-01 5 178408674 178408674 G A GRM6 Missense_Mutation p.A873V 0.14 deleterious_low_confidence(0.04) benign(0.007) TCGA-ZB-A96H-01 6 75852973 75852973 T C COL12A1 Missense_Mutation p.K1608E 0.07 probably_damaging(0.998) TCGA-ZB-A96H-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.36 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96H-01 8 59058706 59058706 G A FAM110B 5'UTR 0.45 TCGA-ZB-A96H-01 9 129856079 129856079 C - ANGPTL2 Frame_Shift_Del p.G315Afs*43 0.10 TCGA-ZB-A96H-01 9 131761936 131761936 T C NUP188 Missense_Mutation p.L1232P 0.13 tolerated(0.14) possibly_damaging(0.534) TCGA-ZB-A96I-01 10 129869096 129869096 A T PTPRE Nonsense_Mutation p.K440* 0.39 TCGA-ZB-A96I-01 10 43976897 43976897 C G ZNF487 Missense_Mutation p.L52V 0.30 tolerated(0.27) benign(0.274) TCGA-ZB-A96I-01 10 47669104 47669104 C G ANTXRL Missense_Mutation p.A231G 0.42 tolerated(1) benign(0.053) TCGA-ZB-A96I-01 10 47945375 47945375 C T FAM21B Missense_Mutation p.R959W 0.09 deleterious(0) probably_damaging(0.988) TCGA-ZB-A96I-01 11 116747729 116747729 C G SIK3 Missense_Mutation p.V241L 0.45 deleterious(0.01) probably_damaging(0.948) TCGA-ZB-A96I-01 11 18633082 18633082 A - SPTY2D1 Frame_Shift_Del p.Y636Mfs*21 0.40 TCGA-ZB-A96I-01 11 47435021 47435021 C T SLC39A13 Missense_Mutation p.A203V 0.09 tolerated(0.15) benign(0.315) TCGA-ZB-A96I-01 11 63137596 63137596 T C SLC22A9 Missense_Mutation p.F23S 0.31 deleterious(0.03) benign(0.212) TCGA-ZB-A96I-01 11 66620022 66620022 C A PC Missense_Mutation p.R571S 0.16 deleterious(0) probably_damaging(1) TCGA-ZB-A96I-01 12 55420928 55420928 G A NEUROD4 Silent p.S235S 0.24 TCGA-ZB-A96I-01 12 65462615 65462615 A G WIF1 Missense_Mutation p.V156A 0.28 deleterious(0) possibly_damaging(0.714) TCGA-ZB-A96I-01 13 45983111 45983111 C T SLC25A30 Missense_Mutation p.A55T 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-ZB-A96I-01 14 106092333 106092333 G C IGHG4 Missense_Mutation p.A24G 0.12 deleterious(0.01) possibly_damaging(0.573) TCGA-ZB-A96I-01 14 64694374 64694374 G A SYNE2 3'Flank 0.39 TCGA-ZB-A96I-01 15 101971525 101971525 A G PCSK6 Silent p.Y218Y 0.38 TCGA-ZB-A96I-01 15 41991097 41991097 G T MGA Nonsense_Mutation p.E684* 0.26 TCGA-ZB-A96I-01 16 1817905 1817905 T C MAPK8IP3 Missense_Mutation p.I1169T 0.07 deleterious(0) probably_damaging(0.92) TCGA-ZB-A96I-01 16 2815546 2815546 A G SRRM2 Missense_Mutation p.R1673G 0.19 unknown(0) TCGA-ZB-A96I-01 17 18150244 18150244 G T FLII Nonsense_Mutation p.C933* 0.19 TCGA-ZB-A96I-01 19 21365735 21365735 G A ZNF431 Missense_Mutation p.G210D 0.30 tolerated(0.19) benign(0.001) TCGA-ZB-A96I-01 19 22363559 22363559 C G ZNF676 Missense_Mutation p.W320C 0.17 tolerated(0.21) probably_damaging(0.961) TCGA-ZB-A96I-01 19 41937234 41937234 G - ATP5SL 3'Flank 0.26 TCGA-ZB-A96I-01 1 110881992 110881992 T C RBM15 5'UTR 0.33 TCGA-ZB-A96I-01 1 119934843 119934843 T C HAO2 Silent p.A294A 0.34 TCGA-ZB-A96I-01 1 142713777 142713777 G C RP11-417J8.6 RNA 0.33 TCGA-ZB-A96I-01 1 211922025 211922025 A - LPGAT1 3'UTR 0.14 TCGA-ZB-A96I-01 1 214557515 214557515 G T PTPN14 Missense_Mutation p.N561K 0.17 tolerated(0.05) possibly_damaging(0.765) TCGA-ZB-A96I-01 1 23420652 23420652 T C LUZP1 Missense_Mutation p.K35E 0.41 deleterious(0.01) possibly_damaging(0.637) TCGA-ZB-A96I-01 21 46875783 46875783 G T COL18A1 Missense_Mutation p.E113D 0.22 unknown(0) TCGA-ZB-A96I-01 2 111419226 111419226 G A BUB1 Missense_Mutation p.P384S 0.23 tolerated(0.4) benign(0.118) TCGA-ZB-A96I-01 2 231121 231121 C A SH3YL1 Missense_Mutation p.D202Y 0.34 deleterious(0.01) possibly_damaging(0.908) TCGA-ZB-A96I-01 3 52524090 52524090 G T NISCH Splice_Site p.X1153_splice 0.53 TCGA-ZB-A96I-01 4 146791434 146791434 T G ZNF827 Silent p.S648S 0.11 TCGA-ZB-A96I-01 5 176637651 176637651 C T NSD1 Missense_Mutation p.L751F 0.23 tolerated_low_confidence(0.11) benign(0.049) TCGA-ZB-A96I-01 5 179069370 179069370 G A C5orf60 Silent p.S268S 0.33 TCGA-ZB-A96I-01 5 38407050 38407050 C A EGFLAM Missense_Mutation p.P317T 0.09 tolerated_low_confidence(0.33) benign(0.005) TCGA-ZB-A96I-01 5 67590497 67590497 A - PIK3R1 Frame_Shift_Del p.I521Yfs*11 0.19 TCGA-ZB-A96I-01 6 33257608 33257608 G A PFDN6 5'UTR 0.09 TCGA-ZB-A96I-01 7 134632438 134632438 A G CALD1 Missense_Mutation p.K571R 0.07 tolerated(0.19) unknown(0) TCGA-ZB-A96I-01 7 150778305 150778305 G A TMUB1 3'UTR 0.08 TCGA-ZB-A96I-01 7 20454122 20454122 C A ITGB8 3'UTR 0.35 TCGA-ZB-A96I-01 7 20825175 20825175 A T SP8 Silent p.A87A 0.50 TCGA-ZB-A96I-01 8 119122412 119122412 C T EXT1 Missense_Mutation p.V292I 0.09 tolerated(1) benign(0.028) TCGA-ZB-A96I-01 8 32621810 32621810 T G NRG1 Missense_Mutation p.F610V 0.27 deleterious(0.03) benign(0.356) TCGA-ZB-A96I-01 9 101914083 101914083 A G TGFBR1 3'UTR 0.09 TCGA-ZB-A96I-01 9 131857856 131857856 C T CRAT Silent p.G567G 0.10 TCGA-ZB-A96I-01 X 106793345 106793345 C T FRMPD3 Nonsense_Mutation p.Q190* 0.10 TCGA-ZB-A96I-01 X 107069627 107069627 C T MID2 5'UTR 0.27 TCGA-ZB-A96K-01 11 3848918 3848918 C A RHOG Missense_Mutation p.A151S 0.15 tolerated(0.1) possibly_damaging(0.731) TCGA-ZB-A96K-01 11 8728679 8728679 C T ST5 Missense_Mutation p.G842R 0.11 deleterious(0) probably_damaging(0.984) TCGA-ZB-A96K-01 12 49426277 49426277 C A KMT2D Missense_Mutation p.G4071W 0.33 unknown(0) TCGA-ZB-A96K-01 14 107218824 107218824 G A IGHV3-74 Missense_Mutation p.S68L 0.06 deleterious_low_confidence(0.01) benign(0.109) TCGA-ZB-A96K-01 14 67768124 67768124 C G MPP5 Missense_Mutation p.P199A 0.11 tolerated(0.73) benign(0.002) TCGA-ZB-A96K-01 14 73686118 73686118 G T PSEN1 3'UTR 0.31 TCGA-ZB-A96K-01 15 74335363 74335363 T C PML Missense_Mutation p.S582P 0.13 deleterious(0.01) probably_damaging(0.939) TCGA-ZB-A96K-01 16 56997022 56997022 G T CETP Missense_Mutation p.K73N 0.17 tolerated(0.48) benign(0.039) TCGA-ZB-A96K-01 16 67691319 67691319 T A RLTPR Silent p.L1402L 0.15 TCGA-ZB-A96K-01 17 17106004 17106004 G C PLD6 3'UTR 0.25 TCGA-ZB-A96K-01 17 2541571 2541571 A C PAFAH1B1 5'UTR 0.30 TCGA-ZB-A96K-01 17 75398454 75398454 C T SEPT9 Silent p.F130F 0.32 TCGA-ZB-A96K-01 19 16198893 16198893 G A TPM4 Silent p.A183A 0.24 TCGA-ZB-A96K-01 1 120437268 120437268 G T ADAM30 Silent p.T564T 0.19 TCGA-ZB-A96K-01 20 62848569 62848569 T - MYT1 Frame_Shift_Del p.F595Lfs*40 0.10 TCGA-ZB-A96K-01 22 30422945 30422945 C T MTMR3 3'UTR 0.14 TCGA-ZB-A96K-01 22 37452392 37452392 G A KCTD17 Missense_Mutation p.G118S 0.18 tolerated(0.06) benign(0.074) TCGA-ZB-A96K-01 2 100020920 100020920 G A REV1 Missense_Mutation p.P1011L 0.23 deleterious(0) probably_damaging(0.931) TCGA-ZB-A96K-01 2 46611675 46611675 C T EPAS1 Missense_Mutation p.S830L 0.30 deleterious(0) probably_damaging(0.96) TCGA-ZB-A96K-01 3 15710507 15710507 G A ANKRD28 3'UTR 0.11 TCGA-ZB-A96K-01 4 126370429 126370429 A T FAT4 Missense_Mutation p.Q2753L 0.12 benign(0.06) TCGA-ZB-A96K-01 5 65476531 65476531 C T SREK1 3'UTR 0.15 TCGA-ZB-A96K-01 5 92919559 92919559 C T NR2F1 5'UTR 0.09 TCGA-ZB-A96K-01 6 24466943 24466944 - T GPLD1 Nonsense_Mutation p.Y262* 0.23 TCGA-ZB-A96K-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.19 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96K-01 8 64124330 64124330 G T YTHDF3 3'UTR 0.20 TCGA-ZB-A96K-01 X 2832674 2832674 T C ARSD Intron 0.10 TCGA-ZB-A96L-01 10 101911756 101911756 C A ERLIN1 3'UTR 0.18 TCGA-ZB-A96L-01 10 103347536 103347536 C T POLL Intron 0.31 TCGA-ZB-A96L-01 11 133792535 133792535 G C IGSF9B Missense_Mutation p.A737G 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-ZB-A96L-01 11 65792733 65792733 C T CATSPER1 Missense_Mutation p.R373H 0.42 tolerated(1) benign(0.001) TCGA-ZB-A96L-01 11 6592511 6592511 G A DNHD1 Missense_Mutation p.R4590H 0.15 benign(0.175) TCGA-ZB-A96L-01 12 104341603 104341603 T - HSP90B1 3'UTR 0.18 TCGA-ZB-A96L-01 12 120575409 120575409 G T GCN1L1 Missense_Mutation p.F2201L 0.25 benign(0.012) TCGA-ZB-A96L-01 12 123187243 123187243 C G HCAR2 Missense_Mutation p.E196D 0.40 deleterious(0.03) probably_damaging(0.995) TCGA-ZB-A96L-01 12 32735171 32735171 G C FGD4 Missense_Mutation p.D124H 0.15 deleterious_low_confidence(0.04) benign(0.003) TCGA-ZB-A96L-01 12 57112668 57112668 G - NACA Intron 0.17 TCGA-ZB-A96L-01 15 56134159 56134159 T C NEDD4 Missense_Mutation p.Y951C 0.36 deleterious(0) probably_damaging(0.998) TCGA-ZB-A96L-01 15 58834137 58834137 G A LIPC Missense_Mutation p.E143K 0.37 deleterious(0.01) possibly_damaging(0.812) TCGA-ZB-A96L-01 16 30681874 30681874 G T FBRS 3'UTR 0.47 TCGA-ZB-A96L-01 16 31473623 31473623 C G ARMC5 Missense_Mutation p.A252G 0.55 tolerated(0.2) benign(0.117) TCGA-ZB-A96L-01 16 70284921 70284921 G T EXOSC6 3'UTR 0.29 TCGA-ZB-A96L-01 16 87743034 87743034 C T KLHDC4 Silent p.G428G 0.43 TCGA-ZB-A96L-01 17 3725337 3725337 T C C17orf85 Missense_Mutation p.K269R 0.06 deleterious(0) benign(0.202) TCGA-ZB-A96L-01 17 41004087 41004087 G A AOC3 Missense_Mutation p.V243M 0.17 deleterious(0.01) benign(0.355) TCGA-ZB-A96L-01 17 49302425 49302425 G C MBTD1 Missense_Mutation p.P33R 0.62 deleterious(0.01) possibly_damaging(0.713) TCGA-ZB-A96L-01 19 41510064 41510064 A - CYP2B6 Frame_Shift_Del p.Y111Mfs*3 0.33 TCGA-ZB-A96L-01 19 43965085 43965085 G T LYPD3 3'UTR 0.29 TCGA-ZB-A96L-01 19 58386226 58386226 C T ZNF814 Missense_Mutation p.D178N 0.48 tolerated(0.06) probably_damaging(0.971) TCGA-ZB-A96L-01 1 113456395 113456395 A G SLC16A1 3'UTR 0.45 TCGA-ZB-A96L-01 1 114308221 114308221 T C RSBN1 3'UTR 0.14 TCGA-ZB-A96L-01 1 153750309 153750309 C T SLC27A3 Missense_Mutation p.T417M 0.34 deleterious(0) probably_damaging(1) TCGA-ZB-A96L-01 1 154143134 154143134 T G TPM3 Missense_Mutation p.K232N 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-ZB-A96L-01 1 36921795 36921795 C T MRPS15 Missense_Mutation p.C210Y 0.09 deleterious(0) probably_damaging(0.987) TCGA-ZB-A96L-01 1 77095417 77095417 T C ST6GALNAC3 3'UTR 0.41 TCGA-ZB-A96L-01 20 23586453 23586453 G T CST9 Missense_Mutation p.L17I 0.25 deleterious(0.03) possibly_damaging(0.496) TCGA-ZB-A96L-01 20 47261018 47261018 C T PREX1 Missense_Mutation p.R1177Q 0.16 deleterious(0.01) possibly_damaging(0.621) TCGA-ZB-A96L-01 20 48760108 48760108 C T TMEM189-UBE2V1 Missense_Mutation p.A58T 0.17 tolerated_low_confidence(0.33) benign(0.018) TCGA-ZB-A96L-01 22 51041859 51041859 T C MAPK8IP2 Missense_Mutation p.S127P 0.20 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-ZB-A96L-01 2 159312934 159312934 A C CCDC148 Silent p.A6A 0.26 TCGA-ZB-A96L-01 2 179547466 179547466 G A TTN Missense_Mutation p.R11018W 0.37 TCGA-ZB-A96L-01 2 230223083 230223083 T A DNER 3'UTR 0.29 TCGA-ZB-A96L-01 2 97594940 97594940 C A FAM178B Intron 0.34 TCGA-ZB-A96L-01 3 109031471 109031471 G A DPPA2 Silent p.D34D 0.47 TCGA-ZB-A96L-01 3 111940004 111940004 T C SLC9C1 Silent p.A547A 0.61 TCGA-ZB-A96L-01 3 179316468 179316510 CTAACCGCTCTGGACTTGGCATTGGCAATCTCTGCCGCTTGGC - MRPL47 Frame_Shift_Del p.A119Ifs*3 0.45 TCGA-ZB-A96L-01 4 170911637 170911637 T C MFAP3L 3'UTR 0.38 TCGA-ZB-A96L-01 6 53767447 53767447 A G LRRC1 Missense_Mutation p.I270V 0.30 tolerated(0.09) probably_damaging(0.972) TCGA-ZB-A96L-01 7 17385327 17385327 A G AHR 3'UTR 0.44 TCGA-ZB-A96L-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.39 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96L-01 8 70405280 70405280 G A SULF1 Intron 0.08 TCGA-ZB-A96L-01 8 87226533 87226533 T G SLC7A13 3'UTR 0.53 TCGA-ZB-A96L-01 9 136080728 136080728 G A OBP2B 3'UTR 0.42 TCGA-ZB-A96L-01 9 34256485 34256485 C T KIF24 Silent p.T1040T 0.29 TCGA-ZB-A96L-01 9 91607822 91607822 G A C9orf47 3'UTR 0.25 TCGA-ZB-A96M-01 10 129905997 129905997 A G MKI67 Silent p.T1369T 0.13 TCGA-ZB-A96M-01 11 113848267 113848267 C T HTR3A Intron 0.10 TCGA-ZB-A96M-01 11 31810640 31810640 C T PAX6 3'UTR 0.24 TCGA-ZB-A96M-01 11 4510534 4510534 C T OR52K1 Missense_Mutation p.T135M 0.12 deleterious(0.02) benign(0.026) TCGA-ZB-A96M-01 11 61488195 61488195 C T DAGLA Missense_Mutation p.P47L 0.20 tolerated(0.41) benign(0.356) TCGA-ZB-A96M-01 12 130649201 130649201 G A FZD10 Missense_Mutation p.E572K 0.20 tolerated_low_confidence(0.07) benign(0.286) TCGA-ZB-A96M-01 12 68051696 68051696 G T DYRK2 Missense_Mutation p.D337Y 0.15 deleterious(0) probably_damaging(0.937) TCGA-ZB-A96M-01 14 102505407 102505407 G A DYNC1H1 Missense_Mutation p.R3759H 0.12 possibly_damaging(0.806) TCGA-ZB-A96M-01 14 34400407 34400407 G A EGLN3 Silent p.C124C 0.09 TCGA-ZB-A96M-01 16 22149814 22149814 T C VWA3A Missense_Mutation p.V758A 0.04 tolerated(1) benign(0) TCGA-ZB-A96M-01 16 2318009 2318009 G A RNPS1 5'Flank 0.11 TCGA-ZB-A96M-01 16 72830010 72830010 G T ZFHX3 Missense_Mutation p.H2191N 0.22 probably_damaging(0.985) TCGA-ZB-A96M-01 16 9857896 9857896 G A GRIN2A Missense_Mutation p.R1169W 0.06 deleterious(0.02) probably_damaging(0.978) TCGA-ZB-A96M-01 17 18967415 18967415 C T SNORD3B-2 RNA 0.25 TCGA-ZB-A96M-01 17 39927911 39927911 G A JUP Missense_Mutation p.P66S 0.18 tolerated(0.52) benign(0.002) TCGA-ZB-A96M-01 17 76456002 76456002 C T DNAH17 Missense_Mutation p.A3159T 0.10 benign(0.133) TCGA-ZB-A96M-01 19 42829036 42829036 C T TMEM145 3'UTR 0.29 TCGA-ZB-A96M-01 19 42863343 42863343 G T MEGF8 Missense_Mutation p.V1746F 0.15 deleterious(0) benign(0.385) TCGA-ZB-A96M-01 19 52393919 52393920 CA - ZNF649 Frame_Shift_Del p.V490Gfs*8 0.17 TCGA-ZB-A96M-01 19 58265229 58265229 T G ZNF776 Missense_Mutation p.F244C 0.10 tolerated(0.06) possibly_damaging(0.629) TCGA-ZB-A96M-01 1 183913443 183913443 C T COLGALT2 Silent p.E428E 0.20 TCGA-ZB-A96M-01 1 204410672 204410672 G A PIK3C2B Missense_Mutation p.S1059F 0.21 deleterious(0) probably_damaging(0.979) TCGA-ZB-A96M-01 1 214171100 214171100 C T PROX1 Missense_Mutation p.R408C 0.10 deleterious(0) probably_damaging(0.998) TCGA-ZB-A96M-01 1 237729877 237729877 C T RYR2 Silent p.A1075A 0.11 TCGA-ZB-A96M-01 2 202900305 202900305 G A FZD7 Missense_Mutation p.R312H 0.20 deleterious(0.04) possibly_damaging(0.671) TCGA-ZB-A96M-01 2 8871364 8871364 T C KIDINS220 Missense_Mutation p.N1601S 0.38 tolerated_low_confidence(0.27) benign(0.005) TCGA-ZB-A96M-01 5 149216549 149216549 C T PPARGC1B Missense_Mutation p.A844V 0.18 tolerated(0.05) possibly_damaging(0.834) TCGA-ZB-A96M-01 7 141419010 141419010 C A WEE2 Missense_Mutation p.R242S 0.05 deleterious(0) probably_damaging(0.988) TCGA-ZB-A96M-01 7 26240328 26240328 G A HNRNPA2B1 5'UTR 0.09 TCGA-ZB-A96M-01 7 72848545 72848545 G A FZD9 Missense_Mutation p.A70T 0.20 tolerated(0.12) benign(0.202) TCGA-ZB-A96M-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.14 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96M-01 7 82791768 82791768 C G PCLO Missense_Mutation p.Q47H 0.21 unknown(0) TCGA-ZB-A96M-01 8 139609209 139609209 T C COL22A1 Missense_Mutation p.E1457G 0.10 unknown(0) TCGA-ZB-A96M-01 9 2718310 2718310 C T KCNV2 Missense_Mutation p.R191W 0.09 deleterious(0) probably_damaging(0.993) TCGA-ZB-A96M-01 X 63409392 63409392 G A AMER1 3'UTR 0.20 TCGA-ZB-A96O-01 14 56233013 56233013 G A RP11-813I20.2 Intron 0.11 TCGA-ZB-A96O-01 19 15535043 15535043 G - WIZ Frame_Shift_Del p.Q726Rfs*44 0.11 TCGA-ZB-A96O-01 4 128754468 128754468 T - HSPA4L 3'UTR 0.10 TCGA-ZB-A96O-01 5 148747637 148747637 C - PCYOX1L Frame_Shift_Del p.L304Cfs*10 0.11 TCGA-ZB-A96O-01 6 152558014 152558014 G T SYNE1 Missense_Mutation p.P6713T 0.18 probably_damaging(0.963) TCGA-ZB-A96O-01 7 73818851 73818852 AC - CLIP2 3'UTR 0.35 TCGA-ZB-A96O-01 X 10588516 10588516 G A MID1 5'UTR 0.08 TCGA-ZB-A96P-01 11 82896654 82896654 A T PCF11 3'UTR 0.05 TCGA-ZB-A96P-01 13 51915403 51915403 T C SERPINE3 Missense_Mutation p.L59P 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-ZB-A96P-01 17 78252675 78252675 A G RNF213 Intron 0.22 TCGA-ZB-A96P-01 18 44140157 44140157 G A LOXHD1 5'Flank 0.09 TCGA-ZB-A96P-01 1 160456468 160456468 C T SLAMF6 3'UTR 0.15 TCGA-ZB-A96P-01 1 29189743 29189743 G T OPRD1 Missense_Mutation p.R356L 0.24 tolerated(0.73) benign(0.003) TCGA-ZB-A96P-01 1 8403969 8403969 G A SLC45A1 Missense_Mutation p.V715M 0.21 tolerated(0.32) benign(0.016) TCGA-ZB-A96P-01 2 27121371 27121371 C T DPYSL5 Missense_Mutation p.L2F 0.09 tolerated(0.22) benign(0.064) TCGA-ZB-A96P-01 3 137786461 137786461 G T DZIP1L Silent p.S638S 0.15 TCGA-ZB-A96P-01 3 46939881 46939881 G A PTH1R Missense_Mutation p.R186H 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-ZB-A96P-01 7 77408705 77408705 T A RSBN1L 3'UTR 0.05 TCGA-ZB-A96Q-01 10 101293172 101293172 C T NKX2-3 Missense_Mutation p.T95M 0.07 tolerated(0.11) benign(0.34) TCGA-ZB-A96Q-01 10 24883931 24883931 T ATC ARHGAP21 Frame_Shift_Ins p.K1275Rfs*8 0.22 TCGA-ZB-A96Q-01 15 42278052 42278052 A G PLA2G4E Silent p.A729A 0.14 TCGA-ZB-A96Q-01 16 57550255 57550255 G A CCDC102A Missense_Mutation p.R457W 0.12 deleterious(0) probably_damaging(1) TCGA-ZB-A96Q-01 16 84456271 84456271 G A ATP2C2 Missense_Mutation p.G271R 0.14 deleterious(0) probably_damaging(1) TCGA-ZB-A96Q-01 17 45893997 45893997 C T OSBPL7 Missense_Mutation p.G287D 0.21 tolerated(0.38) benign(0.101) TCGA-ZB-A96Q-01 19 49244634 49244634 C T IZUMO1 Missense_Mutation p.E286K 0.09 tolerated(0.11) benign(0.285) TCGA-ZB-A96Q-01 19 7927379 7927379 C T EVI5L Missense_Mutation p.L636F 0.21 deleterious(0.04) benign(0.441) TCGA-ZB-A96Q-01 1 12919987 12919987 C A PRAMEF2 Missense_Mutation p.H243N 0.09 tolerated(0.05) benign(0.275) TCGA-ZB-A96Q-01 1 155306189 155306189 T C ASH1L 3'UTR 0.11 TCGA-ZB-A96Q-01 22 44392308 44392308 G T SAMM50 3'UTR 0.29 TCGA-ZB-A96Q-01 2 166188030 166188030 C T SCN2A Silent p.H780H 0.15 TCGA-ZB-A96Q-01 3 64592729 64592729 G T ADAMTS9 Nonsense_Mutation p.Y1127* 0.18 TCGA-ZB-A96Q-01 4 155506807 155506807 C T FGA Missense_Mutation p.G592R 0.18 deleterious(0.02) benign(0.404) TCGA-ZB-A96Q-01 5 37059083 37059083 C T NIPBL Missense_Mutation p.R2501W 0.15 deleterious(0) possibly_damaging(0.727) TCGA-ZB-A96Q-01 6 30919631 30919631 T C DPCR1 Silent p.D1130D 0.14 TCGA-ZB-A96Q-01 6 32039803 32039803 T C TNXB Missense_Mutation p.K1652E 0.12 probably_damaging(0.981) TCGA-ZB-A96Q-01 6 90405582 90405582 C T MDN1 Silent p.Q3171Q 0.17 TCGA-ZB-A96Q-01 6 9977791 9977791 G A OFCC1 Missense_Mutation p.T4I 0.15 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-ZB-A96Q-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.15 deleterious(0.05) probably_damaging(0.992) TCGA-ZB-A96Q-01 8 27634549 27634549 G A ESCO2 Missense_Mutation p.E242K 0.22 tolerated(0.42) benign(0.001) TCGA-ZB-A96Q-01 8 67357602 67357602 T C ADHFE1 Missense_Mutation p.I168T 0.10 deleterious(0) benign(0.299) TCGA-ZB-A96Q-01 9 107588059 107588059 T G ABCA1 Missense_Mutation p.E816A 0.06 tolerated(0.13) benign(0.115) TCGA-ZB-A96Q-01 9 71509508 71509508 C T PIP5K1B Missense_Mutation p.T242M 0.09 deleterious(0.01) possibly_damaging(0.677) TCGA-ZB-A96Q-01 X 135427620 135427620 T C GPR112 Silent p.T585T 0.26 TCGA-ZB-A96R-01 10 3178647 3178647 G C PFKP Missense_Mutation p.R744T 0.14 deleterious(0) probably_damaging(0.982) TCGA-ZB-A96R-01 12 57432329 57432329 G T MYO1A Missense_Mutation p.L543I 0.19 tolerated(0.38) possibly_damaging(0.479) TCGA-ZB-A96R-01 14 65879748 65879748 C T FUT8 Intron 0.22 TCGA-ZB-A96R-01 16 25703804 25703804 G A HS3ST4 Silent p.P22P 0.22 TCGA-ZB-A96R-01 16 67563716 67563716 G A FAM65A 5'UTR 0.12 TCGA-ZB-A96R-01 16 70595653 70595653 G A SF3B3 Missense_Mutation p.E752K 0.13 deleterious(0) probably_damaging(0.984) TCGA-ZB-A96R-01 19 46190969 46190969 G T SNRPD2 Missense_Mutation p.L67M 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-ZB-A96R-01 1 150444238 150444238 C A RPRD2 Missense_Mutation p.F938L 0.09 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ZB-A96R-01 1 47746343 47746343 G A STIL Missense_Mutation p.S596F 0.09 deleterious(0.02) probably_damaging(0.91) TCGA-ZB-A96R-01 3 196664238 196664238 G A NCBP2 Intron 0.17 TCGA-ZB-A96V-01 10 134942643 134942643 C T GPR123 Silent p.A437A 0.40 TCGA-ZB-A96V-01 10 135341999 135341999 C T CYP2E1 Silent p.F64F 0.30 TCGA-ZB-A96V-01 10 71332555 71332555 C T NEUROG3 Missense_Mutation p.R82Q 0.25 deleterious(0.02) possibly_damaging(0.475) TCGA-ZB-A96V-01 10 90692534 90692534 C T ACTA2 3'Flank 0.17 TCGA-ZB-A96V-01 11 118657002 118657002 G C DDX6 5'UTR 0.15 TCGA-ZB-A96V-01 11 132307151 132307151 G C OPCML Missense_Mutation p.A210G 0.38 deleterious(0.04) benign(0.171) TCGA-ZB-A96V-01 11 16068114 16068114 G A SOX6 Silent p.D523D 0.27 TCGA-ZB-A96V-01 11 18554026 18554026 A T UEVLD Nonsense_Mutation p.Y419* 0.07 TCGA-ZB-A96V-01 11 47437189 47437189 C T SLC39A13 3'UTR 0.19 TCGA-ZB-A96V-01 11 64985064 64985064 G A SLC22A20 RNA 0.17 TCGA-ZB-A96V-01 12 102046903 102046903 G A MYBPC1 Silent p.K523K 0.24 TCGA-ZB-A96V-01 12 109927908 109927908 G A UBE3B Intron 0.29 TCGA-ZB-A96V-01 12 112717046 112717046 A - HECTD4 Frame_Shift_Del p.L414Cfs*4 0.19 TCGA-ZB-A96V-01 12 121013751 121013751 C G RNF10 Missense_Mutation p.S786C 0.27 deleterious(0.03) possibly_damaging(0.827) TCGA-ZB-A96V-01 12 21622850 21622850 T G PYROXD1 3'UTR 0.23 TCGA-ZB-A96V-01 12 89982637 89982637 C T ATP2B1 3'UTR 0.19 TCGA-ZB-A96V-01 12 99640643 99640643 C T ANKS1B Splice_Site p.X586_splice 0.12 TCGA-ZB-A96V-01 13 111164485 111164485 G A COL4A2 Missense_Mutation p.G1696S 0.18 unknown(0) TCGA-ZB-A96V-01 14 24567745 24567745 C T PCK2 Silent p.I174I 0.24 TCGA-ZB-A96V-01 14 66974456 66974456 C T GPHN 5'UTR 0.20 TCGA-ZB-A96V-01 14 93178266 93178266 C T LGMN Silent p.S215S 0.24 TCGA-ZB-A96V-01 15 41625118 41625118 G C NUSAP1 5'UTR 0.27 TCGA-ZB-A96V-01 15 59499262 59499262 C A LDHAL6B Silent p.T41T 0.20 TCGA-ZB-A96V-01 16 1497080 1497080 G A CLCN7 Missense_Mutation p.S753L 0.17 deleterious(0) probably_damaging(0.945) TCGA-ZB-A96V-01 16 15706472 15706472 G C KIAA0430 Nonsense_Mutation p.S1139* 0.15 TCGA-ZB-A96V-01 16 50811826 50811826 C A CYLD Nonsense_Mutation p.S371* 0.35 TCGA-ZB-A96V-01 17 19451348 19451348 T C SLC47A1 Silent p.S119S 0.19 TCGA-ZB-A96V-01 17 39680632 39680635 CGGC TGG KRT19 Frame_Shift_Del p.S273Tfs*6 0.12 TCGA-ZB-A96V-01 17 76523021 76523021 C T DNAH17 Missense_Mutation p.V1189M 0.12 benign(0.243) TCGA-ZB-A96V-01 17 7691535 7691535 C T DNAH2 Silent p.Y2291Y 0.19 TCGA-ZB-A96V-01 18 44595919 44595919 C T KATNAL2 Missense_Mutation p.S247F 0.11 deleterious(0) probably_damaging(0.997) TCGA-ZB-A96V-01 18 65181841 65181841 G A DSEL Missense_Mutation p.A12V 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.873) TCGA-ZB-A96V-01 18 67733068 67733068 G A RTTN Nonsense_Mutation p.Q1582* 0.22 TCGA-ZB-A96V-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.28 probably_damaging(0.99) TCGA-ZB-A96V-01 19 11141493 11141493 G A SMARCA4 Missense_Mutation p.R1157Q 0.21 probably_damaging(0.999) TCGA-ZB-A96V-01 19 45153101 45153101 G C PVR Missense_Mutation p.E150Q 0.21 deleterious(0) probably_damaging(0.965) TCGA-ZB-A96V-01 19 48832713 48832713 C T EMP3 Missense_Mutation p.L96F 0.24 tolerated(0.16) probably_damaging(0.999) TCGA-ZB-A96V-01 19 53269290 53269290 A C ZNF600 Silent p.R573R 0.22 TCGA-ZB-A96V-01 19 8615522 8615522 G A MYO1F Silent p.L276L 0.24 TCGA-ZB-A96V-01 1 115829263 115829263 G T NGF Missense_Mutation p.R52S 0.36 tolerated(0.36) benign(0.038) TCGA-ZB-A96V-01 1 12018611 12018611 C T PLOD1 Silent p.I294I 0.14 TCGA-ZB-A96V-01 1 155316166 155316166 C T ASH1L Intron 0.15 TCGA-ZB-A96V-01 1 212141959 212141959 A C INTS7 Missense_Mutation p.C636G 0.21 tolerated(0.32) benign(0.382) TCGA-ZB-A96V-01 1 235577839 235577839 G A TBCE Missense_Mutation p.D93N 0.13 tolerated(0.21) benign(0.077) TCGA-ZB-A96V-01 1 43201638 43201638 G A CLDN19 Silent p.G179G 0.12 TCGA-ZB-A96V-01 1 74665349 74665349 C T FPGT-TNNI3K Silent p.G41G 0.26 TCGA-ZB-A96V-01 20 2639397 2639397 C G IDH3B Nonstop_Mutation p.*386Yext*29 0.42 TCGA-ZB-A96V-01 21 30716674 30716674 G A BACH1 3'UTR 0.13 TCGA-ZB-A96V-01 22 18913231 18913231 A G PRODH Missense_Mutation p.C163R 0.14 deleterious(0.04) benign(0.047) TCGA-ZB-A96V-01 22 21403200 21403200 C A AC002472.13 Intron 0.23 TCGA-ZB-A96V-01 22 28501578 28501578 G A TTC28 Missense_Mutation p.A999V 0.17 deleterious(0.03) probably_damaging(1) TCGA-ZB-A96V-01 22 29090049 29090049 C A CHEK2 Nonsense_Mutation p.E521* 0.20 TCGA-ZB-A96V-01 22 29704683 29704683 C T GAS2L1 Silent p.R196R 0.30 TCGA-ZB-A96V-01 22 45278069 45278069 G A PHF21B 3'UTR 0.20 TCGA-ZB-A96V-01 2 112854654 112854654 C T TMEM87B Silent p.L380L 0.14 TCGA-ZB-A96V-01 2 120932475 120932475 G A EPB41L5 Missense_Mutation p.E732K 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ZB-A96V-01 2 189951463 189951463 G C COL5A2 Missense_Mutation p.Q227E 0.12 probably_damaging(0.926) TCGA-ZB-A96V-01 2 204599639 204599639 G A CD28 3'UTR 0.27 TCGA-ZB-A96V-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-ZB-A96V-01 3 111685490 111685490 A G PHLDB2 Silent p.E1036E 0.13 TCGA-ZB-A96V-01 3 132379501 132379501 C G UBA5 Missense_Mutation p.I40M 0.29 deleterious(0.02) possibly_damaging(0.809) TCGA-ZB-A96V-01 3 155200470 155200470 C A PLCH1 Missense_Mutation p.L1123F 0.22 tolerated_low_confidence(0.12) benign(0.013) TCGA-ZB-A96V-01 3 30733031 30733031 G A TGFBR2 Silent p.S573S 0.37 TCGA-ZB-A96V-01 3 50369585 50369585 C T RASSF1 Missense_Mutation p.D124N 0.16 deleterious(0.05) possibly_damaging(0.677) TCGA-ZB-A96V-01 3 52813020 52813020 A G ITIH1 Missense_Mutation p.Y123C 0.11 deleterious(0) probably_damaging(1) TCGA-ZB-A96V-01 4 158242692 158242692 G C GRIA2 Missense_Mutation p.E275Q 0.36 tolerated(1) benign(0) TCGA-ZB-A96V-01 4 22456539 22456539 T G GPR125 Silent p.I141I 0.25 TCGA-ZB-A96V-01 4 38696483 38696483 A G KLF3 Missense_Mutation p.Y271C 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZB-A96V-01 4 72434376 72434376 A T SLC4A4 3'UTR 0.05 TCGA-ZB-A96V-01 4 78079583 78079583 G A CCNG2 Intron 0.14 TCGA-ZB-A96V-01 5 140476031 140476031 G A PCDHB2 Missense_Mutation p.V553M 0.18 deleterious(0) probably_damaging(0.986) TCGA-ZB-A96V-01 5 175934515 175934516 - TA FAF2 3'UTR 0.19 TCGA-ZB-A96V-01 5 68662520 68662520 C T TAF9 Intron 0.25 TCGA-ZB-A96V-01 6 107003662 107003662 G A AIM1 Missense_Mutation p.E1461K 0.16 tolerated(0.09) probably_damaging(0.955) TCGA-ZB-A96V-01 6 26199368 26199368 A T HIST1H2AD Missense_Mutation p.L35H 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZB-A96V-01 6 27799296 27799296 G A HIST1H4K Missense_Mutation p.R4C 0.21 tolerated_low_confidence(0.06) benign(0.012) TCGA-ZB-A96V-01 6 31630408 31630408 G A GPANK1 Missense_Mutation p.H236Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-ZB-A96V-01 6 32820828 32820828 G A TAP1 Missense_Mutation p.L256F 0.32 deleterious(0.05) benign(0.232) TCGA-ZB-A96V-01 6 35260372 35260372 C T ZNF76 Missense_Mutation p.R325C 0.06 tolerated(0.07) benign(0.01) TCGA-ZB-A96V-01 7 139723557 139723557 A C PARP12 3'UTR 0.28 TCGA-ZB-A96V-01 7 150174507 150174507 C A GIMAP8 Missense_Mutation p.A546E 0.17 tolerated(1) benign(0.047) TCGA-ZB-A96V-01 7 29185997 29185997 C G CPVL Intron 0.40 TCGA-ZB-A96V-01 7 74149824 74149824 G A GTF2I Missense_Mutation p.R462K 0.10 tolerated(0.44) benign(0.022) TCGA-ZB-A96V-01 8 144995484 144995484 G A PLEC Silent p.F2972F 0.14 TCGA-ZB-A96V-01 8 17228600 17228600 G A MTMR7 Nonsense_Mutation p.Q86* 0.13 TCGA-ZB-A96V-01 8 67589949 67589949 G A C8orf44 Silent p.R2R 0.14 TCGA-ZB-A96V-01 9 139413084 139413084 C T NOTCH1 Missense_Mutation p.R353H 0.08 deleterious(0) probably_damaging(0.999) TCGA-ZB-A96V-01 9 88272475 88272475 G A AGTPBP1 Missense_Mutation p.R262W 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-ZB-A96V-01 X 111090622 111090622 G T TRPC5 Missense_Mutation p.P474T 0.17 deleterious(0) probably_damaging(1) TCGA-ZB-A96V-01 X 112048266 112048266 C T AMOT Missense_Mutation p.R562H 0.27 unknown(0) TCGA-ZB-A96V-01 X 153648515 153648515 C T TAZ Intron 0.12 TCGA-ZB-A96V-01 X 18631369 18631369 A - CDKL5 Frame_Shift_Del p.R752Dfs*32 0.08 TCGA-ZB-A96V-01 X 41082535 41082535 G A USP9X Missense_Mutation p.D2211N 0.55 deleterious(0) probably_damaging(0.98) TCGA-ZB-A96V-01 X 69670114 69670114 C G DLG3 Missense_Mutation p.Q267E 0.33 tolerated(0.2) benign(0.002) TCGA-ZB-A96V-01 X 73963428 73963428 G T KIAA2022 Silent p.R322R 0.40 TCGA-ZC-AAA7-01 10 115595039 115595039 C T DCLRE1A Missense_Mutation p.E999K 0.28 deleterious(0) probably_damaging(1) TCGA-ZC-AAA7-01 10 16957098 16957098 G A CUBN Silent p.V2428V 0.20 TCGA-ZC-AAA7-01 10 38241588 38241588 G A ZNF25 Missense_Mutation p.H280Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZC-AAA7-01 11 102818738 102818738 C A MMP13 Missense_Mutation p.G365C 0.28 deleterious(0) possibly_damaging(0.77) TCGA-ZC-AAA7-01 11 64031214 64031214 C T PLCB3 Missense_Mutation p.P836L 0.34 deleterious(0) probably_damaging(0.996) TCGA-ZC-AAA7-01 11 66358915 66358915 C T CCDC87 Silent p.S524S 0.22 TCGA-ZC-AAA7-01 11 74547372 74547372 C T RNF169 Missense_Mutation p.S575L 0.26 deleterious(0.02) possibly_damaging(0.873) TCGA-ZC-AAA7-01 12 109509448 109509448 C T USP30 Missense_Mutation p.S171L 0.22 deleterious(0) possibly_damaging(0.804) TCGA-ZC-AAA7-01 12 112704761 112704761 C T HECTD4 Missense_Mutation p.G639S 0.25 benign(0.115) TCGA-ZC-AAA7-01 12 122763584 122763584 C G CLIP1 Silent p.L1252L 0.17 TCGA-ZC-AAA7-01 12 53183665 53183665 G T KRT3 3'UTR 0.31 TCGA-ZC-AAA7-01 12 53700782 53700782 G A C12orf10 Missense_Mutation p.R327Q 0.46 deleterious(0) possibly_damaging(0.745) TCGA-ZC-AAA7-01 12 6730026 6730026 C T LPAR5 Missense_Mutation p.R130H 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZC-AAA7-01 12 7982501 7982501 C T SLC2A14 Missense_Mutation p.R148H 0.25 deleterious(0.02) probably_damaging(0.933) TCGA-ZC-AAA7-01 13 110830441 110830441 G T COL4A1 Missense_Mutation p.Q866K 0.28 benign(0.085) TCGA-ZC-AAA7-01 13 33685017 33685017 G C STARD13 Missense_Mutation p.R879G 0.13 tolerated(0.24) benign(0.153) TCGA-ZC-AAA7-01 13 41885703 41885703 C T NAA16 Silent p.L13L 0.25 TCGA-ZC-AAA7-01 13 95271505 95271505 C - GPR180 Frame_Shift_Del p.H203Tfs*2 0.21 TCGA-ZC-AAA7-01 14 104135927 104135927 C T KLC1 Missense_Mutation p.H293Y 0.13 deleterious(0) probably_damaging(0.954) TCGA-ZC-AAA7-01 14 20010528 20010528 G A POTEM Intron 0.13 TCGA-ZC-AAA7-01 14 23902825 23902825 C A MYH7 Silent p.V39V 0.20 TCGA-ZC-AAA7-01 14 50120764 50120764 G A POLE2 Silent p.I385I 0.19 TCGA-ZC-AAA7-01 14 64679552 64679552 A - SYNE2 Frame_Shift_Del p.N6296Ifs*15 0.23 TCGA-ZC-AAA7-01 15 20644361 20644361 C T HERC2P3 RNA 0.16 TCGA-ZC-AAA7-01 16 14989442 14989442 C T NOMO1 Silent p.D1203D 0.13 TCGA-ZC-AAA7-01 16 21136549 21136549 C G DNAH3 Missense_Mutation p.E451Q 0.30 tolerated(0.38) benign(0.002) TCGA-ZC-AAA7-01 16 27556751 27556751 C G GTF3C1 Missense_Mutation p.E105D 0.28 tolerated(0.44) benign(0.036) TCGA-ZC-AAA7-01 16 5057391 5057391 C G SEC14L5 Silent p.L492L 0.45 TCGA-ZC-AAA7-01 16 50820834 50820834 C T CYLD Missense_Mutation p.S673L 0.38 deleterious(0.02) possibly_damaging(0.882) TCGA-ZC-AAA7-01 16 71765679 71765679 G A AP1G1 3'Flank 0.39 TCGA-ZC-AAA7-01 16 81965142 81965142 C T PLCG2 Silent p.F874F 0.25 TCGA-ZC-AAA7-01 16 83984792 83984792 G T OSGIN1 Intron 0.22 TCGA-ZC-AAA7-01 17 10411812 10411812 C T MYH1 Missense_Mutation p.V589M 0.34 deleterious(0) probably_damaging(0.983) TCGA-ZC-AAA7-01 17 18036682 18036682 C T MYO15A Silent p.V1488V 0.33 TCGA-ZC-AAA7-01 17 4800968 4800968 G A MINK1 3'UTR 0.07 TCGA-ZC-AAA7-01 17 58275758 58275758 G C USP32 Missense_Mutation p.S1099R 0.07 deleterious(0) probably_damaging(0.993) TCGA-ZC-AAA7-01 17 61511941 61511941 G A CYB561 Missense_Mutation p.A193V 0.29 tolerated(0.27) benign(0.017) TCGA-ZC-AAA7-01 17 70643693 70643693 G A SLC39A11 3'UTR 0.07 TCGA-ZC-AAA7-01 17 78318573 78318573 G C RNF213 Silent p.L2146L 0.26 TCGA-ZC-AAA7-01 19 1799778 1799778 A T ATP8B3 Intron 0.21 TCGA-ZC-AAA7-01 19 24270002 24270002 G A ZNF254 5'UTR 0.18 TCGA-ZC-AAA7-01 19 3532524 3532524 C T FZR1 Missense_Mutation p.S373L 0.37 deleterious(0.02) probably_damaging(1) TCGA-ZC-AAA7-01 19 36558337 36558337 G A WDR62 Missense_Mutation p.E231K 0.25 tolerated(0.14) possibly_damaging(0.451) TCGA-ZC-AAA7-01 19 37619265 37619265 C T ZNF420 Missense_Mutation p.R458C 0.10 tolerated(0.24) possibly_damaging(0.737) TCGA-ZC-AAA7-01 19 4028760 4028760 C T PIAS4 Missense_Mutation p.P239S 0.38 deleterious(0.01) probably_damaging(1) TCGA-ZC-AAA7-01 19 49110924 49110924 G A SPACA4 3'UTR 0.27 TCGA-ZC-AAA7-01 19 54314512 54314512 C T NLRP12 Missense_Mutation p.R134H 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZC-AAA7-01 19 8191232 8191232 C G FBN3 Splice_Site p.X852_splice 0.10 TCGA-ZC-AAA7-01 1 108212015 108212015 C G VAV3 Intron 0.25 TCGA-ZC-AAA7-01 1 11008316 11008316 G A C1orf127 Missense_Mutation p.R626C 0.23 tolerated(0.07) possibly_damaging(0.55) TCGA-ZC-AAA7-01 1 150484110 150484110 G C ECM1 Missense_Mutation p.E323Q 0.13 tolerated(0.11) benign(0.082) TCGA-ZC-AAA7-01 1 166135246 166135246 G C FAM78B Missense_Mutation p.F80L 0.16 tolerated(0.35) benign(0.022) TCGA-ZC-AAA7-01 1 19071364 19071364 C T PAX7 Missense_Mutation p.L487F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.815) TCGA-ZC-AAA7-01 1 215916612 215916612 G A USH2A Silent p.L3819L 0.18 TCGA-ZC-AAA7-01 1 228645484 228645484 C T HIST3H2A Missense_Mutation p.R12H 0.23 tolerated_low_confidence(0.09) unknown(0) TCGA-ZC-AAA7-01 1 232600795 232600795 C T SIPA1L2 Missense_Mutation p.E871K 0.18 tolerated(0.06) benign(0.013) TCGA-ZC-AAA7-01 1 35657000 35657000 T C SFPQ Missense_Mutation p.Y320C 0.29 deleterious(0) probably_damaging(0.997) TCGA-ZC-AAA7-01 1 36389177 36389177 C T AGO1 3'UTR 0.28 TCGA-ZC-AAA7-01 1 907768 907768 G A PLEKHN1 Silent p.P322P 0.25 TCGA-ZC-AAA7-01 20 43535345 43535345 A G YWHAB 3'UTR 0.08 TCGA-ZC-AAA7-01 20 6758985 6758985 C T BMP2 Missense_Mutation p.S147L 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-ZC-AAA7-01 22 37397917 37397917 A T TEX33 Missense_Mutation p.F150L 0.37 deleterious(0) benign(0.294) TCGA-ZC-AAA7-01 22 40075830 40075830 C T CACNA1I Missense_Mutation p.S1833F 0.18 deleterious(0.02) possibly_damaging(0.608) TCGA-ZC-AAA7-01 2 174820297 174820297 G A SP3 Missense_Mutation p.R315W 0.19 deleterious(0.01) benign(0.165) TCGA-ZC-AAA7-01 2 179498642 179498642 G C TTN Missense_Mutation p.T14195S 0.12 TCGA-ZC-AAA7-01 2 187702282 187702282 C T ZSWIM2 Splice_Site p.X165_splice 0.06 TCGA-ZC-AAA7-01 3 100569540 100569540 T G ABI3BP Missense_Mutation p.T422P 0.31 tolerated(0.06) possibly_damaging(0.507) TCGA-ZC-AAA7-01 3 26752149 26752149 G A LRRC3B 3'UTR 0.10 TCGA-ZC-AAA7-01 3 33576832 33576832 C T CLASP2 Missense_Mutation p.R1235H 0.38 deleterious(0) probably_damaging(0.997) TCGA-ZC-AAA7-01 3 440069 440069 G C CHL1 Splice_Site p.X1085_splice 0.17 TCGA-ZC-AAA7-01 3 52433570 52433570 G C DNAH1 Missense_Mutation p.E4151Q 0.10 benign(0.009) TCGA-ZC-AAA7-01 4 102751113 102751113 G A BANK1 Silent p.L73L 0.22 TCGA-ZC-AAA7-01 4 103717443 103717443 A C UBE2D3 3'Flank 0.11 TCGA-ZC-AAA7-01 4 17616306 17616306 C T MED28 Missense_Mutation p.S10F 0.14 deleterious_low_confidence(0.01) benign(0.372) TCGA-ZC-AAA7-01 4 48114451 48114451 T A TXK Missense_Mutation p.I85F 0.36 tolerated(0.83) benign(0.209) TCGA-ZC-AAA7-01 4 56428640 56428640 T A PDCL2 Nonsense_Mutation p.K168* 0.39 TCGA-ZC-AAA7-01 4 62778447 62778447 G C LPHN3 Missense_Mutation p.R627T 0.09 deleterious(0) probably_damaging(0.967) TCGA-ZC-AAA7-01 5 140554630 140554630 C T PCDHB7 Silent p.S738S 0.16 TCGA-ZC-AAA7-01 6 117150093 117150093 C A GPRC6A Silent p.V28V 0.14 TCGA-ZC-AAA7-01 6 134491476 134491476 G A SGK1 Missense_Mutation p.A504V 0.29 tolerated(0.06) possibly_damaging(0.477) TCGA-ZC-AAA7-01 6 138192383 138192386 CCTC - TNFAIP3 Frame_Shift_Del p.P7Rfs*5 0.38 TCGA-ZC-AAA7-01 6 168319553 168319553 G A MLLT4 Missense_Mutation p.D943N 0.21 deleterious(0) probably_damaging(0.997) TCGA-ZC-AAA7-01 6 168376821 168376821 T C RP3-470B24.5 RNA 0.07 TCGA-ZC-AAA7-01 6 26043842 26043842 G A HIST1H2BB Missense_Mutation p.S15F 0.19 tolerated_low_confidence(0.19) probably_damaging(0.991) TCGA-ZC-AAA7-01 6 31926869 31926869 C T SKIV2L 5'UTR 0.19 TCGA-ZC-AAA7-01 6 7211152 7211152 G T RREB1 Nonsense_Mutation p.E181* 0.19 TCGA-ZC-AAA7-01 7 112127106 112127106 G T LSMEM1 Missense_Mutation p.V86F 0.34 tolerated(0.1) benign(0.006) TCGA-ZC-AAA7-01 7 136699906 136699906 T C CHRM2 Silent p.L98L 0.21 TCGA-ZC-AAA7-01 7 22852685 22852685 T C TOMM7 3'UTR 0.25 TCGA-ZC-AAA7-01 7 5570194 5570194 G A ACTB 5'UTR 0.40 TCGA-ZC-AAA7-01 7 6189291 6189291 C T USP42 Silent p.S488S 0.26 TCGA-ZC-AAA7-01 8 142222381 142222381 C T SLC45A4 Missense_Mutation p.R688K 0.30 tolerated_low_confidence(0.79) benign(0.002) TCGA-ZC-AAA7-01 8 143692564 143692564 C A ARC 3'UTR 0.24 TCGA-ZC-AAA7-01 8 99101420 99101420 C T C8orf47 Missense_Mutation p.R59C 0.16 deleterious(0.03) benign(0.043) TCGA-ZC-AAA7-01 9 115166314 115166314 C T HSDL2 Silent p.S19S 0.12 TCGA-ZC-AAA7-01 9 128083733 128083733 G A GAPVD1 Missense_Mutation p.D542N 0.17 tolerated(0.19) probably_damaging(0.917) TCGA-ZC-AAA7-01 9 77761689 77761689 C T OSTF1 3'UTR 0.24 TCGA-ZC-AAA7-01 9 8528717 8528717 G A PTPRD Missense_Mutation p.R139C 0.50 deleterious(0) probably_damaging(0.998) TCGA-ZC-AAA7-01 9 90219958 90219958 C T DAPK1 Missense_Mutation p.S51F 0.23 deleterious(0) probably_damaging(0.916) TCGA-ZC-AAA7-01 X 119077214 119077214 C G NKAP Missense_Mutation p.D119H 0.23 deleterious(0.01) probably_damaging(0.964) TCGA-ZC-AAA7-01 X 30848580 30848580 A G TAB3 3'UTR 0.08 TCGA-ZC-AAA7-01 X 73071116 73071116 T A XIST RNA 0.64 TCGA-ZC-AAAA-01 14 104026239 104026239 C T BAG5 Silent p.K462K 0.20 TCGA-ZC-AAAA-01 14 42373581 42373581 A T LRFN5 3'UTR 0.08 TCGA-ZC-AAAA-01 19 11358770 11358770 T C DOCK6 Missense_Mutation p.R260G 0.12 deleterious(0) probably_damaging(0.987) TCGA-ZC-AAAA-01 19 2223397 2223397 C T DOT1L Missense_Mutation p.R1170W 0.07 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ZC-AAAA-01 1 226924466 226924466 T C ITPKB Missense_Mutation p.K232E 0.14 tolerated_low_confidence(1) benign(0) TCGA-ZC-AAAA-01 1 238048084 238048084 A G ZP4 Missense_Mutation p.C459R 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZC-AAAA-01 1 24201095 24201095 G T CNR2 Missense_Mutation p.T338N 0.22 tolerated(0.15) benign(0.319) TCGA-ZC-AAAA-01 20 35467676 35467676 C T SOGA1 Missense_Mutation p.A286T 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZC-AAAA-01 20 44512151 44512151 C T ZSWIM1 Missense_Mutation p.A307V 0.16 tolerated(0.34) benign(0.001) TCGA-ZC-AAAA-01 22 19965598 19965598 C T ARVCF Silent p.R527R 0.20 TCGA-ZC-AAAA-01 3 14177323 14177323 G A TMEM43 Missense_Mutation p.R266Q 0.14 tolerated(0.35) benign(0.065) TCGA-ZC-AAAA-01 3 170150763 170150763 T - CLDN11 3'UTR 0.09 TCGA-ZC-AAAA-01 3 39126157 39126157 G A WDR48 Missense_Mutation p.E435K 0.09 deleterious(0) possibly_damaging(0.728) TCGA-ZC-AAAA-01 6 26124472 26124472 T C HIST1H2AC Silent p.R4R 0.07 TCGA-ZC-AAAA-01 7 73814739 73814739 C A CLIP2 Missense_Mutation p.L974I 0.07 deleterious(0.05) benign(0.407) TCGA-ZC-AAAA-01 8 41519005 41519005 G T ANK1 Intron 0.25 TCGA-ZC-AAAA-01 9 92020361 92020361 C T SEMA4D Missense_Mutation p.C4Y 0.29 tolerated_low_confidence(1) benign(0) TCGA-ZC-AAAA-01 X 73047593 73047593 C T XIST RNA 0.11 TCGA-ZC-AAAF-01 10 5499693 5499693 A G NET1 3'UTR 0.08 TCGA-ZC-AAAF-01 10 6277099 6277099 T - PFKFB3 3'UTR 0.08 TCGA-ZC-AAAF-01 11 102195457 102195457 C T BIRC3 Silent p.L73L 0.06 TCGA-ZC-AAAF-01 11 118766530 118766530 G A BCL9L 3'UTR 0.07 TCGA-ZC-AAAF-01 11 20177914 20177914 G A DBX1 Missense_Mutation p.A332V 0.20 tolerated(0.28) benign(0.009) TCGA-ZC-AAAF-01 11 30034742 30034742 C A KCNA4 5'UTR 0.10 TCGA-ZC-AAAF-01 11 73814214 73814214 C T C2CD3 Missense_Mutation p.A848T 0.05 tolerated(0.31) benign(0.103) TCGA-ZC-AAAF-01 12 102025390 102025390 C A MYBPC1 Missense_Mutation p.L86I 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-ZC-AAAF-01 12 45784258 45784258 T A ANO6 Missense_Mutation p.C476S 0.17 tolerated(1) benign(0.05) TCGA-ZC-AAAF-01 14 39703302 39703302 C G MIA2 5'UTR 0.11 TCGA-ZC-AAAF-01 15 81296303 81296303 C T MESDC1 3'UTR 0.16 TCGA-ZC-AAAF-01 16 67578871 67578871 C T FAM65A Missense_Mutation p.S981L 0.13 tolerated(1) benign(0.32) TCGA-ZC-AAAF-01 17 57654626 57654626 G A DHX40 Splice_Site p.X325_splice 0.11 TCGA-ZC-AAAF-01 18 9257210 9257210 C T ANKRD12 Silent p.V1315V 0.17 TCGA-ZC-AAAF-01 19 15806749 15806749 C T CYP4F12 Silent p.D373D 0.13 TCGA-ZC-AAAF-01 19 6919662 6919662 G A EMR1 Silent p.K508K 0.11 TCGA-ZC-AAAF-01 1 152192370 152192370 C T HRNR Missense_Mutation p.G579S 0.08 unknown(0) TCGA-ZC-AAAF-01 1 233489635 233489635 G A MLK4 Missense_Mutation p.A357T 0.13 deleterious(0) probably_damaging(1) TCGA-ZC-AAAF-01 1 3638592 3638592 C T TP73 Missense_Mutation p.P146L 0.19 deleterious(0.01) possibly_damaging(0.842) TCGA-ZC-AAAF-01 1 79095431 79095431 T C IFI44L Missense_Mutation p.I185T 0.19 deleterious(0) benign(0.32) TCGA-ZC-AAAF-01 21 47860018 47860018 A T PCNT Missense_Mutation p.K3099M 0.17 probably_damaging(0.926) TCGA-ZC-AAAF-01 22 37768971 37768971 C T ELFN2 3'UTR 0.09 TCGA-ZC-AAAF-01 22 42979870 42979870 C T POLDIP3 3'UTR 0.09 TCGA-ZC-AAAF-01 2 166848733 166848733 G A SCN1A Silent p.Y1684Y 0.15 TCGA-ZC-AAAF-01 2 189872842 189872842 G C COL3A1 Missense_Mutation p.G1167R 0.06 unknown(0) TCGA-ZC-AAAF-01 2 36780128 36780128 A G FEZ2 3'UTR 0.13 TCGA-ZC-AAAF-01 3 10400446 10400446 T C ATP2B2 Missense_Mutation p.N689D 0.21 tolerated(0.79) benign(0.003) TCGA-ZC-AAAF-01 5 140229689 140229689 G A PCDHA9 Missense_Mutation p.A537T 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ZC-AAAF-01 5 140237079 140237079 C T PCDHA10 Silent p.D482D 0.22 TCGA-ZC-AAAF-01 5 169720369 169720369 T C LCP2 Missense_Mutation p.Y29C 0.05 deleterious(0) probably_damaging(0.926) TCGA-ZC-AAAF-01 6 90347517 90347517 A G LYRM2 Missense_Mutation p.Y44H 0.05 tolerated(0.29) possibly_damaging(0.469) TCGA-ZC-AAAF-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.14 deleterious(0.05) probably_damaging(0.992) TCGA-ZC-AAAF-01 8 110451154 110451154 T C PKHD1L1 Silent p.Y1263Y 0.15 TCGA-ZC-AAAF-01 8 99076754 99076754 C T C8orf47 5'UTR 0.14 TCGA-ZC-AAAF-01 9 135779050 135779050 A G TSC1 Silent p.H732H 0.15 TCGA-ZC-AAAF-01 9 139379711 139379711 C T C9orf163 3'UTR 0.12 TCGA-ZC-AAAF-01 9 23690647 23690647 A C ELAVL2 3'UTR 0.10 TCGA-ZC-AAAF-01 X 24580544 24580548 GGGTT - PCYT1B Frame_Shift_Del p.T325Efs*40 0.15 TCGA-ZC-AAAH-01 11 129795080 129795080 A G PRDM10 Silent p.P529P 0.16 TCGA-ZC-AAAH-01 14 24737809 24737809 G A RABGGTA Missense_Mutation p.A306V 0.08 tolerated(0.12) benign(0.026) TCGA-ZC-AAAH-01 14 92958568 92958568 G A SLC24A4 Missense_Mutation p.G567D 0.10 deleterious(0) possibly_damaging(0.826) TCGA-ZC-AAAH-01 15 83499641 83499641 T A WHAMM Silent p.P644P 0.08 TCGA-ZC-AAAH-01 1 21502692 21502692 G T EIF4G3 5'UTR 0.15 TCGA-ZC-AAAH-01 2 131103792 131103792 G T IMP4 Missense_Mutation p.K236N 0.21 deleterious(0.03) benign(0.081) TCGA-ZC-AAAH-01 2 220342686 220342686 C T SPEG Missense_Mutation p.A1629V 0.10 probably_damaging(0.994) TCGA-ZC-AAAH-01 3 129267989 129267989 A G H1FOO Missense_Mutation p.K175R 0.09 tolerated(0.39) benign(0.024) TCGA-ZC-AAAH-01 4 77057479 77057479 T C NUP54 Missense_Mutation p.T128A 0.07 tolerated(0.24) benign(0.04) TCGA-ZC-AAAH-01 6 21595042 21595042 C T SOX4 Silent p.L93L 0.09 TCGA-ZC-AAAH-01 6 33272376 33272376 C A TAPBP Missense_Mutation p.R303L 0.05 tolerated(0.54) benign(0) TCGA-ZC-AAAH-01 9 32429449 32429449 G A ACO1 Missense_Mutation p.C506Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZC-AAAH-01 9 93637110 93637110 A G SYK Missense_Mutation p.K387R 0.07 tolerated(0.07) benign(0.111) TCGA-ZC-AAAH-01 X 47489178 47489178 C T CFP Silent p.L22L 0.25 TCGA-ZL-A9V6-01 10 135193684 135193684 C T PAOX Silent p.S121S 0.39 TCGA-ZL-A9V6-01 10 27434500 27434500 T A YME1L1 Missense_Mutation p.D120V 0.22 deleterious(0) possibly_damaging(0.821) TCGA-ZL-A9V6-01 11 533552 533552 C A HRAS Missense_Mutation p.K117N 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-ZL-A9V6-01 11 64522263 64522263 C T PYGM Missense_Mutation p.V301M 0.33 deleterious(0) possibly_damaging(0.858) TCGA-ZL-A9V6-01 14 106691816 106691816 T C IGHV3-21 Missense_Mutation p.I70V 0.30 deleterious_low_confidence(0.04) benign(0.11) TCGA-ZL-A9V6-01 14 25042983 25042983 C T CTSG Missense_Mutation p.V210M 0.30 tolerated(0.12) benign(0.348) TCGA-ZL-A9V6-01 14 95562455 95562455 T - DICER1 Frame_Shift_Del p.K1601Rfs*19 0.10 TCGA-ZL-A9V6-01 15 32460238 32460238 G A CHRNA7 Missense_Mutation p.R392H 0.13 tolerated(0.22) benign(0.023) TCGA-ZL-A9V6-01 15 91428299 91428299 C T FES Silent p.C8C 0.14 TCGA-ZL-A9V6-01 17 71165548 71165548 C A SSTR2 Silent p.T30T 0.12 TCGA-ZL-A9V6-01 18 19418334 19418334 G A MIB1 Missense_Mutation p.R613H 0.29 deleterious(0.02) possibly_damaging(0.841) TCGA-ZL-A9V6-01 19 1043091 1043091 C T ABCA7 Nonsense_Mutation p.R211* 0.18 TCGA-ZL-A9V6-01 19 50338429 50338429 C T MED25 Nonsense_Mutation p.R557* 0.17 TCGA-ZL-A9V6-01 1 151133022 151133022 G T LYSMD1 3'UTR 0.33 TCGA-ZL-A9V6-01 1 2337927 2337927 C T PEX10 Missense_Mutation p.S323N 0.42 tolerated(0.06) benign(0.067) TCGA-ZL-A9V6-01 2 202501474 202501474 G T TMEM237 Missense_Mutation p.L91I 0.24 tolerated(0.46) benign(0.009) TCGA-ZL-A9V6-01 2 224866430 224866430 C A SERPINE2 Missense_Mutation p.G75V 0.42 deleterious(0) probably_damaging(1) TCGA-ZL-A9V6-01 3 186795893 186795893 C T ST6GAL1 3'UTR 0.36 TCGA-ZL-A9V6-01 4 140477294 140477294 C T SETD7 5'UTR 0.15 TCGA-ZL-A9V6-01 4 177071055 177071055 A C WDR17 Silent p.V689V 0.31 TCGA-ZL-A9V6-01 4 183696284 183696284 A G TENM3 Missense_Mutation p.N1761S 0.19 tolerated(0.38) possibly_damaging(0.636) TCGA-ZL-A9V6-01 6 160485520 160485520 G A IGF2R Missense_Mutation p.R1325H 0.32 deleterious(0) probably_damaging(0.999) TCGA-ZL-A9V6-01 6 50011451 50011451 C T DEFB112 Missense_Mutation p.R60Q 0.45 tolerated(1) benign(0.001) TCGA-ZL-A9V6-01 7 6443266 6443266 T G RAC1 3'Flank 0.33 TCGA-ZL-A9V6-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.30 deleterious(0.05) probably_damaging(0.992) TCGA-ZL-A9V6-01 8 39587436 39587436 G T ADAM18 Nonsense_Mutation p.E733* 0.37 TCGA-ZL-A9V6-01 8 81411811 81411811 G A ZBTB10 Missense_Mutation p.R352Q 0.31 tolerated(1) benign(0.006) TCGA-ZL-A9V6-01 9 139997985 139997985 T G MAN1B1 Intron 0.11 TCGA-ZL-A9V6-01 9 35673942 35673942 C T CA9 5'UTR 0.20 TCGA-ZL-A9V6-01 X 105156725 105156725 T C NRK Missense_Mutation p.I777T 0.29 deleterious(0.02) benign(0.022) TCGA-ZL-A9V6-01 X 76761288 76761288 A C ATRX 3'UTR 0.72 TCGA-ZT-A8OM-01 10 11374575 11374610 TCCAGTCTTCCTCTTCGGCATGCCCTGGAAGCTTCT - CELF2 Splice_Site 0.55 TCGA-ZT-A8OM-01 11 125618729 125618729 A - PATE1 3'UTR 0.38 TCGA-ZT-A8OM-01 11 34118841 34118841 C T CAPRIN1 Missense_Mutation p.R667W 0.15 deleterious(0) possibly_damaging(0.565) TCGA-ZT-A8OM-01 11 626730 626730 G A SCT Missense_Mutation p.P78L 0.21 tolerated(1) benign(0.001) TCGA-ZT-A8OM-01 12 57499106 57499106 T G STAT6 Missense_Mutation p.K277Q 0.11 deleterious(0.01) probably_damaging(0.95) TCGA-ZT-A8OM-01 15 23445466 23445466 T C AC100757.1 3'Flank 0.03 TCGA-ZT-A8OM-01 15 33180420 33180420 A G FMN1 Missense_Mutation p.F1040S 0.04 deleterious(0) probably_damaging(0.999) TCGA-ZT-A8OM-01 16 30018353 30018353 T C DOC2A Missense_Mutation p.E238G 0.10 deleterious(0.04) benign(0.008) TCGA-ZT-A8OM-01 16 48175230 48175230 C T ABCC12 Missense_Mutation p.V104M 0.08 tolerated(0.24) benign(0.017) TCGA-ZT-A8OM-01 16 66956076 66956076 T C RRAD Missense_Mutation p.K277R 0.11 tolerated(0.43) benign(0.318) TCGA-ZT-A8OM-01 17 47484122 47484122 T - PHB Frame_Shift_Del p.K202Rfs*22 0.13 TCGA-ZT-A8OM-01 17 48460143 48460143 G C LRRC59 3'UTR 0.25 TCGA-ZT-A8OM-01 19 12739215 12739215 A C ZNF791 Missense_Mutation p.E291A 0.14 deleterious(0.02) benign(0.095) TCGA-ZT-A8OM-01 19 42311151 42311151 G A CEACAM3 Intron 0.07 TCGA-ZT-A8OM-01 1 170985470 170985470 T C MROH9 Missense_Mutation p.M634T 0.11 deleterious(0) probably_damaging(0.933) TCGA-ZT-A8OM-01 1 186313052 186313052 A T TPR Silent p.I1196I 0.11 TCGA-ZT-A8OM-01 1 6206315 6206315 T C CHD5 Missense_Mutation p.I587V 0.14 tolerated(0.29) benign(0.13) TCGA-ZT-A8OM-01 20 44162971 44162971 G A WFDC6 3'UTR 0.13 TCGA-ZT-A8OM-01 3 133191216 133191216 G A BFSP2 Missense_Mutation p.D351N 0.09 deleterious(0.04) possibly_damaging(0.668) TCGA-ZT-A8OM-01 3 154832820 154832820 G A MME Silent p.E78E 0.12 TCGA-ZT-A8OM-01 3 24018736 24018736 C A NR1D2 Silent p.V522V 0.09 TCGA-ZT-A8OM-01 3 63428971 63428971 C A SYNPR Intron 0.12 TCGA-ZT-A8OM-01 5 140482049 140482049 C T PCDHB3 Silent p.L606L 0.04 TCGA-ZT-A8OM-01 5 172395565 172395565 A G RPL26L1 Missense_Mutation p.N91S 0.09 tolerated(0.05) benign(0.009) TCGA-ZT-A8OM-01 5 176023008 176023008 C T GPRIN1 3'UTR 0.13 TCGA-ZT-A8OM-01 5 78426888 78426888 T A BHMT Silent p.T390T 0.08 TCGA-ZT-A8OM-01 6 160888623 160888623 C G LPAL2 RNA 0.10 TCGA-ZT-A8OM-01 6 53512906 53512906 C A KLHL31 3'UTR 0.06 TCGA-ZT-A8OM-01 7 100278476 100278476 G A GIGYF1 3'UTR 0.06 TCGA-ZT-A8OM-01 7 155567796 155567796 C T RBM33 3'UTR 0.07 TCGA-ZT-A8OM-01 X 22291397 22291397 C T ZNF645 Missense_Mutation p.R97C 0.09 deleterious(0.01) benign(0.069) TCGA-ZT-A8OM-01 X 80001189 80001189 C T BRWD3 Missense_Mutation p.R157H 0.06 deleterious(0.01) benign(0.032)