sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-N5-A4R8-01 10 115402734 115402734 G A NRAP Nonsense_Mutation p.Q392* 0.24 TCGA-N5-A4R8-01 10 123503221 123503236 CGGAGCACTTCTGCCC - ATE1 Frame_Shift_Del p.G506Sfs*36 0.25 TCGA-N5-A4R8-01 10 125506231 125506231 T C CPXM2 3'UTR 0.27 TCGA-N5-A4R8-01 11 18194709 18194709 C T MRGPRX4 5'UTR 0.97 TCGA-N5-A4R8-01 11 62293798 62293798 C A AHNAK Missense_Mutation p.M2697I 0.64 benign(0.051) TCGA-N5-A4R8-01 11 67164804 67164804 G C RAD9A Missense_Mutation p.E343Q 0.24 tolerated(0.07) benign(0.432) TCGA-N5-A4R8-01 12 101573838 101573838 G A SLC5A8 Missense_Mutation p.A401V 0.21 tolerated(0.32) benign(0.032) TCGA-N5-A4R8-01 12 4737296 4737296 C A AKAP3 Nonsense_Mutation p.G258* 0.15 TCGA-N5-A4R8-01 12 9760429 9760429 G T KLRB1 Missense_Mutation p.Q3K 0.33 tolerated(0.96) benign(0.001) TCGA-N5-A4R8-01 12 98987870 98987870 C G SLC25A3 Silent p.G38G 0.29 TCGA-N5-A4R8-01 13 72204835 72204835 C G DACH1 Missense_Mutation p.A329P 0.33 probably_damaging(0.998) TCGA-N5-A4R8-01 14 76091051 76091051 G A FLVCR2 Missense_Mutation p.R303Q 0.97 tolerated(0.13) benign(0.033) TCGA-N5-A4R8-01 16 1271916 1271916 G A TPSG1 Missense_Mutation p.P280S 0.49 tolerated(0.33) probably_damaging(0.932) TCGA-N5-A4R8-01 16 15978005 15978005 C T FOPNL Missense_Mutation p.R29Q 0.43 deleterious(0) probably_damaging(0.931) TCGA-N5-A4R8-01 16 48395912 48395912 G A SIAH1 Missense_Mutation p.A174V 0.07 tolerated(0.17) benign(0.121) TCGA-N5-A4R8-01 16 4944606 4944606 C T PPL Missense_Mutation p.R419Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-N5-A4R8-01 16 84801887 84801887 C T USP10 Missense_Mutation p.R641C 0.59 tolerated(0.07) benign(0.12) TCGA-N5-A4R8-01 17 39165215 39165215 G T KRTAP3-1 Missense_Mutation p.H38N 0.24 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-N5-A4R8-01 17 40990780 40990780 G C PSME3 Missense_Mutation p.R159S 0.51 deleterious(0) benign(0.295) TCGA-N5-A4R8-01 17 7578291 7578291 T G TP53 Splice_Site p.X187_splice 0.89 TCGA-N5-A4R8-01 17 7611523 7611523 C G EFNB3 Missense_Mutation p.L124V 0.27 deleterious(0.01) possibly_damaging(0.84) TCGA-N5-A4R8-01 17 7671536 7671536 A G DNAH2 Missense_Mutation p.R1298G 0.57 benign(0.278) TCGA-N5-A4R8-01 17 80141803 80141803 C T CCDC57 Missense_Mutation p.R353H 0.41 tolerated(0.11) benign(0.221) TCGA-N5-A4R8-01 19 13049506 13049506 G A CALR Missense_Mutation p.V5M 0.55 deleterious(0.05) unknown(0) TCGA-N5-A4R8-01 19 22785247 22785247 C T AC011467.1 5'Flank 0.50 TCGA-N5-A4R8-01 1 109793392 109793394 TTC - CELSR2 In_Frame_Del p.F232del 0.48 TCGA-N5-A4R8-01 1 151490983 151490983 A T CGN Intron 0.16 TCGA-N5-A4R8-01 1 154987608 154987608 C T ZBTB7B Nonsense_Mutation p.R192* 0.22 TCGA-N5-A4R8-01 1 161488758 161488758 C G FCGR2A 3'UTR 0.29 TCGA-N5-A4R8-01 1 1650844 1650844 C T CDK11A Missense_Mutation p.R93Q 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.785) TCGA-N5-A4R8-01 1 22161313 22161313 C T HSPG2 Missense_Mutation p.G3527R 0.44 probably_damaging(0.996) TCGA-N5-A4R8-01 1 35476601 35476601 C T ZMYM6 Missense_Mutation p.A367T 0.31 tolerated(0.07) benign(0.146) TCGA-N5-A4R8-01 1 41984100 41984100 C G HIVEP3 Missense_Mutation p.V1815L 0.36 benign(0.009) TCGA-N5-A4R8-01 1 43021941 43021941 A C CCDC30 Missense_Mutation p.K180N 0.62 tolerated(0.16) benign(0.02) TCGA-N5-A4R8-01 1 4772258 4772258 G A AJAP1 Missense_Mutation p.A110T 0.80 tolerated(0.48) benign(0.003) TCGA-N5-A4R8-01 1 67148015 67148015 C T SGIP1 Silent p.P426P 0.49 TCGA-N5-A4R8-01 20 60913126 60913126 C A LAMA5 Nonsense_Mutation p.G613* 0.76 TCGA-N5-A4R8-01 2 179597447 179597447 T G TTN Splice_Site p.X5448_splice 0.48 TCGA-N5-A4R8-01 2 227661386 227661386 G T IRS1 Missense_Mutation p.P690H 0.38 deleterious(0) benign(0.319) TCGA-N5-A4R8-01 3 119434647 119434647 C A MAATS1 Intron 0.10 TCGA-N5-A4R8-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.91 deleterious(0.02) probably_damaging(0.959) TCGA-N5-A4R8-01 3 183995214 183995214 C T ECE2 Silent p.S264S 0.27 TCGA-N5-A4R8-01 4 111436563 111436563 T C ENPEP Missense_Mutation p.W492R 0.58 deleterious(0) probably_damaging(0.957) TCGA-N5-A4R8-01 4 145580958 145580958 G T HHIP Missense_Mutation p.D267Y 0.51 deleterious(0) probably_damaging(0.986) TCGA-N5-A4R8-01 4 177190223 177190223 G T ASB5 Missense_Mutation p.Q13K 0.41 tolerated_low_confidence(0.23) benign(0.254) TCGA-N5-A4R8-01 5 140250487 140250487 C T PCDHA11 Missense_Mutation p.S600L 0.90 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-N5-A4R8-01 5 61733126 61733126 G T IPO11 Missense_Mutation p.S47I 0.84 tolerated(0.16) possibly_damaging(0.772) TCGA-N5-A4R8-01 6 121768821 121768821 T C GJA1 Silent p.A276A 0.24 TCGA-N5-A4R8-01 6 13977863 13977863 G T RNF182 Missense_Mutation p.W171C 0.26 deleterious(0.03) probably_damaging(0.922) TCGA-N5-A4R8-01 6 144093533 144093533 C T PHACTR2 Silent p.D457D 0.53 TCGA-N5-A4R8-01 6 146243850 146243850 A G SHPRH Missense_Mutation p.I1223T 0.70 deleterious(0) possibly_damaging(0.517) TCGA-N5-A4R8-01 6 27783220 27783220 C G HIST1H2BM 3'UTR 0.16 TCGA-N5-A4R8-01 6 28227369 28227369 C T NKAPL Missense_Mutation p.R74W 0.67 tolerated(0.06) unknown(0) TCGA-N5-A4R8-01 6 31669903 31669903 G C ABHD16A Missense_Mutation p.T46R 0.17 tolerated(0.78) benign(0.043) TCGA-N5-A4R8-01 6 31701648 31701648 A C CLIC1 Missense_Mutation p.I80M 0.65 tolerated(0.07) benign(0.152) TCGA-N5-A4R8-01 7 141736712 141736712 C T MGAM Silent p.Y722Y 0.67 TCGA-N5-A4R8-01 7 99631178 99631178 G C ZKSCAN1 Missense_Mutation p.K350N 0.38 tolerated(0.34) probably_damaging(0.994) TCGA-N5-A4R8-01 8 144681482 144681482 C T EEF1D 5'Flank 0.39 TCGA-N5-A4R8-01 8 2021507 2021507 C T MYOM2 Silent p.D349D 0.65 TCGA-N5-A4R8-01 8 87498823 87498824 - T RMDN1 Frame_Shift_Ins p.A129Sfs*4 0.27 TCGA-N5-A4R8-01 9 132576233 132576233 G A TOR1A 3'UTR 0.54 TCGA-N5-A4R8-01 9 14307309 14307309 G A NFIB Missense_Mutation p.R81C 0.82 deleterious(0) probably_damaging(0.997) TCGA-N5-A4R8-01 X 100278581 100278581 A G TRMT2B Missense_Mutation p.S212P 0.56 deleterious(0) probably_damaging(0.996) TCGA-N5-A4R8-01 X 105153215 105153215 G A NRK Missense_Mutation p.E529K 0.54 deleterious(0) possibly_damaging(0.668) TCGA-N5-A4R8-01 X 129263526 129263526 G C AIFM1 3'UTR 0.39 TCGA-N5-A4R8-01 X 48929638 48929638 G A PRAF2 Missense_Mutation p.R143C 0.38 deleterious(0) possibly_damaging(0.887) TCGA-N5-A4R8-01 X 65418862 65418862 G A HEPH Missense_Mutation p.R673Q 0.48 tolerated(0.16) benign(0.02) TCGA-N5-A4R8-01 X 70148385 70148385 C T SLC7A3 Missense_Mutation p.V210I 0.56 tolerated(1) benign(0.004) TCGA-N5-A4RA-01 10 62631181 62631181 A G RHOBTB1 3'UTR 0.24 TCGA-N5-A4RA-01 10 81050918 81050918 G A ZMIZ1 Missense_Mutation p.G248E 0.13 probably_damaging(1) TCGA-N5-A4RA-01 11 4944753 4944753 C T OR51G1 Missense_Mutation p.V273I 0.04 tolerated(0.38) benign(0.002) TCGA-N5-A4RA-01 12 11036812 11036812 A G PRH1 Missense_Mutation p.L2P 0.25 deleterious_low_confidence(0) unknown(0) TCGA-N5-A4RA-01 12 52865910 52865910 C T KRT6C Missense_Mutation p.R232Q 0.78 tolerated(0.06) probably_damaging(0.936) TCGA-N5-A4RA-01 12 89742948 89742948 C T DUSP6 3'UTR 0.25 TCGA-N5-A4RA-01 13 38237782 38237782 A C TRPC4 Missense_Mutation p.F487V 0.28 deleterious(0) possibly_damaging(0.69) TCGA-N5-A4RA-01 14 58795010 58795010 T G ARID4A Missense_Mutation p.V213G 0.43 deleterious(0) probably_damaging(0.919) TCGA-N5-A4RA-01 14 59793305 59793305 A T DAAM1 Nonsense_Mutation p.K418* 0.50 TCGA-N5-A4RA-01 14 65253730 65253730 G A SPTB Missense_Mutation p.R985W 0.39 deleterious(0) possibly_damaging(0.766) TCGA-N5-A4RA-01 14 74036425 74036425 C G ACOT2 Missense_Mutation p.R161G 0.19 tolerated(0.13) benign(0.366) TCGA-N5-A4RA-01 15 101098883 101098883 G A RNU6-181P 3'Flank 0.21 TCGA-N5-A4RA-01 15 22709987 22709987 C G AC116165.1 5'Flank 0.11 TCGA-N5-A4RA-01 15 42109861 42109861 C T MAPKBP1 Missense_Mutation p.T617M 0.56 deleterious(0) probably_damaging(0.962) TCGA-N5-A4RA-01 16 3613764 3613764 C A NLRC3 Missense_Mutation p.G439C 0.40 deleterious(0.03) possibly_damaging(0.469) TCGA-N5-A4RA-01 17 7579718 7579718 A - TP53 Frame_Shift_Del p.P27Lfs*17 0.47 TCGA-N5-A4RA-01 18 14543050 14543050 G A POTEC Silent p.F32F 0.50 TCGA-N5-A4RA-01 18 54385303 54385303 A G WDR7 Missense_Mutation p.I563V 0.26 tolerated(0.97) possibly_damaging(0.487) TCGA-N5-A4RA-01 19 22785204 22785204 C A AC011467.1 5'Flank 0.60 TCGA-N5-A4RA-01 19 24309473 24309473 C T ZNF254 Missense_Mutation p.T224I 0.30 tolerated(0.21) benign(0.008) TCGA-N5-A4RA-01 19 49468686 49468686 G T FTL 5'UTR 0.26 TCGA-N5-A4RA-01 1 154987765 154987765 A - ZBTB7B Frame_Shift_Del p.T245Pfs*9 0.34 TCGA-N5-A4RA-01 1 16342195 16342195 G A HSPB7 Silent p.D131D 0.60 TCGA-N5-A4RA-01 1 17046475 17046475 C A ESPNP RNA 0.09 TCGA-N5-A4RA-01 1 182993005 182993018 CCCGAGTTCGTCAA - LAMC1 Frame_Shift_Del p.P52Rfs*88 0.29 TCGA-N5-A4RA-01 1 216595499 216595499 G A USH2A Silent p.L60L 0.56 TCGA-N5-A4RA-01 20 57766698 57766698 C A ZNF831 Silent p.G208G 0.27 TCGA-N5-A4RA-01 20 57766724 57766724 G T ZNF831 Missense_Mutation p.G217V 0.22 deleterious(0.05) probably_damaging(0.957) TCGA-N5-A4RA-01 21 10944711 10944711 C T TPTE Missense_Mutation p.V175I 0.21 tolerated(1) benign(0.01) TCGA-N5-A4RA-01 21 45844759 45844759 C T TRPM2 Missense_Mutation p.H1192Y 0.59 tolerated(0.1) benign(0.042) TCGA-N5-A4RA-01 22 19709220 19709220 C T SEPT5 Missense_Mutation p.R259W 0.21 deleterious(0) probably_damaging(0.959) TCGA-N5-A4RA-01 22 50716562 50716562 C T PLXNB2 Missense_Mutation p.R1624Q 0.76 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RA-01 2 166908389 166908389 C T SCN1A Silent p.L268L 0.25 TCGA-N5-A4RA-01 2 174081932 174081932 G T MLTK Missense_Mutation p.R314L 0.12 tolerated(0.18) probably_damaging(0.912) TCGA-N5-A4RA-01 2 176964703 176964703 C T HOXD12 Silent p.C58C 0.21 TCGA-N5-A4RA-01 2 24438918 24438918 C T ITSN2 Silent p.K1330K 0.57 TCGA-N5-A4RA-01 2 88390583 88390583 G A SMYD1 Missense_Mutation p.G194D 0.27 deleterious(0) probably_damaging(0.995) TCGA-N5-A4RA-01 3 121825307 121825307 A C CD86 Missense_Mutation p.E221D 0.22 tolerated(0.07) possibly_damaging(0.593) TCGA-N5-A4RA-01 3 12531391 12531391 A G TSEN2 Missense_Mutation p.H31R 0.29 tolerated(0.41) benign(0) TCGA-N5-A4RA-01 3 127358250 127358250 G T PODXL2 Missense_Mutation p.G78V 0.39 deleterious(0) probably_damaging(0.92) TCGA-N5-A4RA-01 3 184073266 184073266 G A CLCN2 Missense_Mutation p.R408C 0.41 deleterious(0) possibly_damaging(0.832) TCGA-N5-A4RA-01 3 42299578 42299578 C T CCK 3'UTR 0.83 TCGA-N5-A4RA-01 4 153250873 153250873 C T FBXW7 Missense_Mutation p.S396N 0.85 deleterious(0) probably_damaging(0.985) TCGA-N5-A4RA-01 5 149226881 149226881 C T PPARGC1B Intron 0.45 TCGA-N5-A4RA-01 5 54619970 54619970 C A SKIV2L2 Missense_Mutation p.L95M 0.24 deleterious(0.04) benign(0.027) TCGA-N5-A4RA-01 5 80626633 80626633 G T ACOT12 Silent p.I506I 0.38 TCGA-N5-A4RA-01 6 138584324 138584324 G T KIAA1244 Silent p.T568T 0.08 TCGA-N5-A4RA-01 7 106508394 106508394 C T PIK3CG Missense_Mutation p.R130W 0.46 deleterious(0.03) benign(0.339) TCGA-N5-A4RA-01 7 128630096 128630096 C T TNPO3 Missense_Mutation p.V473I 0.45 tolerated(0.1) benign(0.018) TCGA-N5-A4RA-01 7 44608737 44608737 G T DDX56 Missense_Mutation p.R429S 0.20 deleterious(0) possibly_damaging(0.856) TCGA-N5-A4RA-01 8 125711778 125711778 G T MTSS1 Missense_Mutation p.T66N 0.52 deleterious(0) benign(0.072) TCGA-N5-A4RA-01 8 70541903 70541903 C G SULF1 Missense_Mutation p.P758R 0.04 deleterious(0) probably_damaging(0.989) TCGA-N5-A4RA-01 9 20862655 20862655 C T FOCAD Silent p.L667L 0.89 TCGA-N5-A4RA-01 9 69117826 69117826 A G PGM5P2 RNA 0.82 TCGA-N5-A4RA-01 X 107374496 107374496 C T ATG4A Missense_Mutation p.T67M 0.30 deleterious(0) probably_damaging(1) TCGA-N5-A4RA-01 X 229480 229480 G A GTPBP6 Missense_Mutation p.T61M 0.75 deleterious(0.03) benign(0.026) TCGA-N5-A4RA-01 X 35993823 35993823 G A CXorf22 Missense_Mutation p.G836R 0.41 deleterious(0.01) probably_damaging(1) TCGA-N5-A4RD-01 10 121337193 121337194 - T TIAL1 Frame_Shift_Ins p.N221Kfs*48 0.30 TCGA-N5-A4RD-01 11 134179592 134179592 C G GLB1L3 Missense_Mutation p.T345S 0.56 tolerated(0.06) probably_damaging(0.979) TCGA-N5-A4RD-01 11 62445085 62445085 G C UBXN1 Missense_Mutation p.Q186E 0.47 tolerated(0.62) benign(0.005) TCGA-N5-A4RD-01 11 68854003 68854003 C T TPCN2 Silent p.I672I 0.78 TCGA-N5-A4RD-01 11 93800731 93800731 A T HEPHL1 Missense_Mutation p.H293L 0.83 deleterious(0) probably_damaging(0.982) TCGA-N5-A4RD-01 12 49434535 49434535 G A KMT2D Missense_Mutation p.P2340S 0.44 probably_damaging(0.998) TCGA-N5-A4RD-01 12 54333359 54333359 G C HOXC13 Missense_Mutation p.W223C 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-N5-A4RD-01 12 66725099 66725099 C T HELB Missense_Mutation p.R946C 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-N5-A4RD-01 12 6700659 6700659 G A CHD4 Missense_Mutation p.R1105W 0.46 deleterious(0) probably_damaging(0.965) TCGA-N5-A4RD-01 13 70314570 70314570 C A KLHL1 Missense_Mutation p.M586I 0.17 deleterious(0) probably_damaging(0.991) TCGA-N5-A4RD-01 15 44048891 44048891 C T PDIA3 Silent p.V97V 0.37 TCGA-N5-A4RD-01 16 1544439 1544439 G A TELO2 Missense_Mutation p.E53K 0.53 deleterious(0) probably_damaging(0.987) TCGA-N5-A4RD-01 16 69373664 69373664 A C NIP7 5'UTR 0.53 TCGA-N5-A4RD-01 16 72992232 72992232 G T ZFHX3 Missense_Mutation p.P605T 0.27 probably_damaging(0.996) TCGA-N5-A4RD-01 16 85721095 85721095 C T GINS2 Missense_Mutation p.R59H 0.52 tolerated(0.06) benign(0.212) TCGA-N5-A4RD-01 16 88677691 88677691 C T ZC3H18 Nonsense_Mutation p.R408* 0.60 TCGA-N5-A4RD-01 17 32964455 32964455 G A TMEM132E Missense_Mutation p.R720Q 0.84 tolerated(0.06) benign(0.074) TCGA-N5-A4RD-01 17 67193233 67193233 T C ABCA10 Silent p.G402G 0.33 TCGA-N5-A4RD-01 17 73661200 73661200 G A RECQL5 Silent p.C61C 0.46 TCGA-N5-A4RD-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.86 deleterious(0) probably_damaging(1) TCGA-N5-A4RD-01 18 76756943 76756943 G A SALL3 Missense_Mutation p.R1175H 0.45 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RD-01 19 14817512 14817512 T A ZNF333 Silent p.A146A 0.84 TCGA-N5-A4RD-01 19 39262551 39262551 C T LGALS7 Missense_Mutation p.R72H 0.46 tolerated(0.16) benign(0.009) TCGA-N5-A4RD-01 19 5680226 5680226 G A C19orf70 Intron 0.88 TCGA-N5-A4RD-01 19 6230661 6230661 C T MLLT1 Missense_Mutation p.V114M 0.87 deleterious(0.02) probably_damaging(0.966) TCGA-N5-A4RD-01 1 145109631 145109631 A C SEC22B RNA 0.10 TCGA-N5-A4RD-01 1 149858535 149858535 G A HIST2H2AC Missense_Mutation p.R4H 0.31 tolerated_low_confidence(0.07) benign(0.006) TCGA-N5-A4RD-01 1 149858536 149858536 T G HIST2H2AC Silent p.R4R 0.32 TCGA-N5-A4RD-01 1 149858537 149858537 G T HIST2H2AC Missense_Mutation p.G5C 0.34 deleterious_low_confidence(0) unknown(0) TCGA-N5-A4RD-01 1 150443187 150443187 A G RPRD2 Missense_Mutation p.K588R 0.30 tolerated_low_confidence(0.08) benign(0.036) TCGA-N5-A4RD-01 1 155629403 155629403 G A YY1AP1 3'UTR 0.27 TCGA-N5-A4RD-01 1 186121933 186121933 C T HMCN1 Missense_Mutation p.S4983F 0.18 benign(0.097) TCGA-N5-A4RD-01 1 62237128 62237128 C T INADL Nonsense_Mutation p.Q184* 0.47 TCGA-N5-A4RD-01 20 62329741 62329741 G A TNFRSF6B Missense_Mutation p.G243D 0.62 tolerated(0.61) benign(0.038) TCGA-N5-A4RD-01 2 113736846 113736846 G T IL36G Missense_Mutation p.W35L 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-N5-A4RD-01 2 119914536 119914536 G T C1QL2 Missense_Mutation p.Q236K 0.46 deleterious(0.01) benign(0.348) TCGA-N5-A4RD-01 2 1906908 1906908 C T MYT1L Missense_Mutation p.R657Q 0.07 tolerated(0.08) possibly_damaging(0.852) TCGA-N5-A4RD-01 2 54853210 54853210 G A SPTBN1 Missense_Mutation p.D495N 0.43 deleterious(0) probably_damaging(0.969) TCGA-N5-A4RD-01 3 134670683 134670683 C A EPHB1 Missense_Mutation p.S198R 0.48 tolerated(0.53) benign(0.005) TCGA-N5-A4RD-01 3 142523431 142523431 C T TRPC1 Missense_Mutation p.H705Y 0.16 tolerated(0.39) benign(0.133) TCGA-N5-A4RD-01 3 173998971 173998971 A T NLGN1 Missense_Mutation p.I784F 0.10 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-N5-A4RD-01 3 194386954 194386954 C G LSG1 Missense_Mutation p.E138Q 0.27 tolerated(0.12) benign(0.126) TCGA-N5-A4RD-01 3 52454935 52454935 C T PHF7 Missense_Mutation p.H144Y 0.82 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RD-01 3 62259445 62259445 C T PTPRG Nonsense_Mutation p.Q1131* 0.74 TCGA-N5-A4RD-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.24 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RD-01 4 154237041 154237042 - GGCAGCTGC TRIM2 In_Frame_Ins p.L560_Q561insRQL 0.19 TCGA-N5-A4RD-01 4 16900019 16900019 G A LDB2 Silent p.Y30Y 0.12 TCGA-N5-A4RD-01 4 186263243 186263243 T C SNX25 Silent p.F556F 0.06 TCGA-N5-A4RD-01 5 140237391 140237391 G A PCDHA10 Silent p.A586A 0.54 TCGA-N5-A4RD-01 5 158140122 158140122 C T EBF1 Missense_Mutation p.E409K 0.17 deleterious_low_confidence(0.01) benign(0.391) TCGA-N5-A4RD-01 5 179998267 179998268 AA - CNOT6 Frame_Shift_Del p.N433Sfs*5 0.34 TCGA-N5-A4RD-01 5 67589138 67589138 G A PIK3R1 Missense_Mutation p.G376R 0.38 deleterious(0) probably_damaging(1) TCGA-N5-A4RD-01 5 67592085 67592086 - T PIK3R1 Frame_Shift_Ins p.E635* 0.28 TCGA-N5-A4RD-01 6 133834153 133834153 A G EYA4 Missense_Mutation p.N493S 0.43 tolerated(0.16) benign(0.001) TCGA-N5-A4RD-01 6 26225539 26225539 C T HIST1H3E Missense_Mutation p.R53C 0.43 deleterious_low_confidence(0) benign(0.261) TCGA-N5-A4RD-01 6 31639652 31639652 C T CSNK2B-LY6G5B-1181 3'UTR 0.40 TCGA-N5-A4RD-01 6 33541652 33541652 G A BAK1 Silent p.I188I 0.52 TCGA-N5-A4RD-01 6 35278356 35278356 C T DEF6 Missense_Mutation p.R120C 0.39 deleterious(0) probably_damaging(0.927) TCGA-N5-A4RD-01 7 124386977 124386977 G A GPR37 Missense_Mutation p.R482W 0.48 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RD-01 7 82579349 82579349 G C PCLO Missense_Mutation p.Q3519E 0.35 unknown(0) TCGA-N5-A4RD-01 7 92905543 92905543 C T CCDC132 Missense_Mutation p.L290F 0.35 tolerated(0.52) probably_damaging(0.972) TCGA-N5-A4RD-01 8 104412603 104412603 C T SLC25A32 3'UTR 0.16 TCGA-N5-A4RD-01 8 113697868 113697868 G A CSMD3 Missense_Mutation p.T750M 0.44 deleterious(0.01) probably_damaging(0.952) TCGA-N5-A4RD-01 8 125989122 125989122 T G ZNF572 Missense_Mutation p.I204M 0.09 deleterious(0) possibly_damaging(0.886) TCGA-N5-A4RD-01 8 26627664 26627664 T C ADRA1A Intron 0.43 TCGA-N5-A4RD-01 9 23692552 23692552 T C ELAVL2 3'UTR 0.37 TCGA-N5-A4RD-01 9 37745609 37745609 C T FRMPD1 Nonsense_Mutation p.Q1194* 0.24 TCGA-N5-A4RD-01 X 152226673 152226673 G A PNMA3 Missense_Mutation p.G421S 0.39 tolerated(0.26) probably_damaging(0.993) TCGA-N5-A4RD-01 X 49032095 49032095 G T PRICKLE3 Missense_Mutation p.S592Y 0.37 tolerated_low_confidence(0.12) benign(0.133) TCGA-N5-A4RD-01 X 49032106 49032106 G T PRICKLE3 Missense_Mutation p.F588L 0.36 tolerated_low_confidence(0.66) benign(0) TCGA-N5-A4RD-01 X 49033341 49033341 G T PRICKLE3 Missense_Mutation p.A389D 0.41 tolerated(0.55) benign(0.066) TCGA-N5-A4RD-01 X 64196270 64196270 C T ZC4H2 5'UTR 0.36 TCGA-N5-A4RD-01 X 86887422 86887422 C T KLHL4 Missense_Mutation p.R513W 0.25 deleterious(0) probably_damaging(1) TCGA-N5-A4RF-01 10 113928673 113928673 G A GPAM Nonsense_Mutation p.R278* 0.67 TCGA-N5-A4RF-01 10 71007270 71007270 C T HKDC1 Missense_Mutation p.R396C 0.15 deleterious(0.01) benign(0.25) TCGA-N5-A4RF-01 10 89720877 89720877 T G PTEN Splice_Site p.X342_splice 0.19 TCGA-N5-A4RF-01 11 113222820 113222820 C T TTC12 Missense_Mutation p.S446L 0.39 tolerated(0.05) benign(0.014) TCGA-N5-A4RF-01 11 62009833 62009833 G T SCGB1D2 Missense_Mutation p.Q18H 0.36 deleterious(0.01) probably_damaging(0.936) TCGA-N5-A4RF-01 11 64513977 64513977 G A PYGM 3'UTR 0.56 TCGA-N5-A4RF-01 12 132625180 132625180 C T DDX51 Missense_Mutation p.R514Q 0.18 deleterious(0.02) possibly_damaging(0.902) TCGA-N5-A4RF-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.93 deleterious(0) possibly_damaging(0.479) TCGA-N5-A4RF-01 12 52501366 52501366 C T AC078864.1 3'Flank 0.42 TCGA-N5-A4RF-01 12 57032079 57032079 G C ATP5B 3'UTR 0.39 TCGA-N5-A4RF-01 12 6700637 6700637 A G CHD4 Missense_Mutation p.F1112S 0.73 deleterious(0) possibly_damaging(0.887) TCGA-N5-A4RF-01 12 971300 971300 G A WNK1 Missense_Mutation p.R668Q 0.65 tolerated(0.44) unknown(0) TCGA-N5-A4RF-01 13 49037935 49037943 AACAGCATA - RB1 In_Frame_Del p.T726_Y728del 0.92 TCGA-N5-A4RF-01 14 102807718 102807718 G - ZNF839 Frame_Shift_Del p.T663Rfs*22 0.22 TCGA-N5-A4RF-01 14 65008092 65008092 C T HSPA2 Silent p.N175N 0.37 TCGA-N5-A4RF-01 15 91795210 91795210 C T SV2B Nonsense_Mutation p.R205* 0.61 TCGA-N5-A4RF-01 16 4165230 4165230 G A ADCY9 Missense_Mutation p.R72W 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.724) TCGA-N5-A4RF-01 16 67645112 67645115 TTGC - CTCF Frame_Shift_Del p.A127Pfs*4 0.44 TCGA-N5-A4RF-01 16 69778900 69778900 C T NOB1 Missense_Mutation p.R282Q 0.23 deleterious(0.02) possibly_damaging(0.783) TCGA-N5-A4RF-01 16 90094129 90094129 A G GAS8 Missense_Mutation p.Q30R 0.51 deleterious(0.01) possibly_damaging(0.703) TCGA-N5-A4RF-01 17 2228662 2228662 C T TSR1 Silent p.A652A 0.16 TCGA-N5-A4RF-01 17 46700472 46700472 G A HOXB9 Silent p.H181H 0.20 TCGA-N5-A4RF-01 17 48184459 48184459 G C PDK2 Missense_Mutation p.K209N 0.13 deleterious(0.01) possibly_damaging(0.89) TCGA-N5-A4RF-01 17 53392710 53392710 A C HLF Missense_Mutation p.M192L 0.69 tolerated(1) benign(0.018) TCGA-N5-A4RF-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.83 deleterious(0) probably_damaging(1) TCGA-N5-A4RF-01 17 79563195 79563195 C T NPLOC4 Missense_Mutation p.R356Q 0.74 deleterious(0.02) probably_damaging(0.968) TCGA-N5-A4RF-01 18 61310414 61310414 T C SERPINB4 Missense_Mutation p.E68G 0.39 tolerated(0.38) benign(0.001) TCGA-N5-A4RF-01 19 10781246 10781246 A G ILF3 5'UTR 0.31 TCGA-N5-A4RF-01 19 12060050 12060050 C A ZNF700 Missense_Mutation p.S404Y 0.16 tolerated(0.09) benign(0.304) TCGA-N5-A4RF-01 19 15067364 15067364 C T SLC1A6 Missense_Mutation p.V365I 0.40 tolerated(1) benign(0) TCGA-N5-A4RF-01 19 22364200 22364200 T A ZNF676 Missense_Mutation p.T107S 0.38 tolerated(0.06) benign(0.122) TCGA-N5-A4RF-01 19 2717146 2717146 G A DIRAS1 3'UTR 0.62 TCGA-N5-A4RF-01 19 35657174 35657174 C T FXYD5 Missense_Mutation p.R145W 0.33 deleterious(0) probably_damaging(0.996) TCGA-N5-A4RF-01 19 36221463 36221463 G A KMT2B Missense_Mutation p.G1741D 0.44 probably_damaging(0.998) TCGA-N5-A4RF-01 19 36222829 36222829 C T KMT2B Missense_Mutation p.P1820S 0.22 benign(0.018) TCGA-N5-A4RF-01 19 46314094 46314094 C T RSPH6A Missense_Mutation p.E219K 0.32 deleterious(0) possibly_damaging(0.627) TCGA-N5-A4RF-01 19 52716323 52716323 C A PPP2R1A Missense_Mutation p.S256Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RF-01 19 56658404 56658404 C T ZNF444 Missense_Mutation p.R42C 0.55 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RF-01 1 112319736 112319736 A G KCND3 Missense_Mutation p.S560P 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.637) TCGA-N5-A4RF-01 1 167400923 167400923 G A CD247 Missense_Mutation p.R164C 0.14 deleterious(0) probably_damaging(1) TCGA-N5-A4RF-01 1 173810047 173810047 T G DARS2 Missense_Mutation p.F355C 0.18 deleterious(0.05) possibly_damaging(0.84) TCGA-N5-A4RF-01 1 212798594 212798594 G A FAM71A Silent p.R125R 0.14 TCGA-N5-A4RF-01 1 241094033 241094033 C T RGS7 Silent p.P123P 0.74 TCGA-N5-A4RF-01 1 27057894 27057894 C G ARID1A Nonsense_Mutation p.Y534* 0.42 TCGA-N5-A4RF-01 1 53416540 53416540 C G SCP2 Missense_Mutation p.R105G 0.65 deleterious(0.01) possibly_damaging(0.713) TCGA-N5-A4RF-01 20 13763375 13763375 T A ESF1 Nonsense_Mutation p.K138* 0.25 TCGA-N5-A4RF-01 21 31654815 31654815 G A KRTAP24-1 Missense_Mutation p.R146C 0.29 tolerated(0.2) benign(0) TCGA-N5-A4RF-01 21 38600596 38600596 C T DSCR3 Missense_Mutation p.E196K 0.33 tolerated(0.08) benign(0.12) TCGA-N5-A4RF-01 21 39580563 39580563 C A DSCR10 RNA 0.42 TCGA-N5-A4RF-01 22 19750852 19750852 G A TBX1 Missense_Mutation p.D167N 0.46 tolerated(0.16) probably_damaging(0.998) TCGA-N5-A4RF-01 22 41489056 41489057 - A EP300 Frame_Shift_Ins p.L18Tfs*21 0.31 TCGA-N5-A4RF-01 2 187702052 187702052 T C ZSWIM2 Missense_Mutation p.I242V 0.79 tolerated(0.07) benign(0.058) TCGA-N5-A4RF-01 2 196851841 196851841 C G DNAH7 Missense_Mutation p.C568S 0.12 tolerated(0.65) benign(0.002) TCGA-N5-A4RF-01 2 29084138 29084138 C T TRMT61B Missense_Mutation p.R280Q 0.21 deleterious(0) probably_damaging(0.986) TCGA-N5-A4RF-01 3 105258906 105258906 A G ALCAM Missense_Mutation p.N273S 0.83 deleterious(0.03) possibly_damaging(0.464) TCGA-N5-A4RF-01 3 120320280 120320280 A T NDUFB4 Intron 0.54 TCGA-N5-A4RF-01 3 170802094 170802094 G T TNIK Missense_Mutation p.L1007I 0.81 tolerated(0.4) possibly_damaging(0.628) TCGA-N5-A4RF-01 3 178916930 178916930 G T PIK3CA Missense_Mutation p.G106V 0.76 deleterious(0.01) probably_damaging(1) TCGA-N5-A4RF-01 3 39150702 39150702 G T TTC21A Nonsense_Mutation p.E52* 0.88 TCGA-N5-A4RF-01 3 77542517 77542517 G C ROBO2 Missense_Mutation p.D280H 0.88 deleterious(0) probably_damaging(0.961) TCGA-N5-A4RF-01 4 100470301 100470301 C G TRMT10A Missense_Mutation p.E322Q 0.12 tolerated_low_confidence(0.2) benign(0.074) TCGA-N5-A4RF-01 4 1379768 1379768 C T UVSSA 3'UTR 0.18 TCGA-N5-A4RF-01 5 140176607 140176607 C T PCDHA2 Silent p.A686A 0.36 TCGA-N5-A4RF-01 5 140216127 140216127 C T PCDHA7 Missense_Mutation p.A720V 0.61 tolerated_low_confidence(0.19) benign(0.043) TCGA-N5-A4RF-01 5 140593933 140593933 C A PCDHB13 Missense_Mutation p.Q80K 0.15 tolerated_low_confidence(0.29) benign(0.002) TCGA-N5-A4RF-01 5 153149914 153149914 G A GRIA1 Missense_Mutation p.V747M 0.35 deleterious(0) probably_damaging(1) TCGA-N5-A4RF-01 5 7727300 7727300 G A ADCY2 Silent p.A599A 0.36 TCGA-N5-A4RF-01 5 79025483 79025483 G T CMYA5 Missense_Mutation p.V299F 0.28 benign(0.008) TCGA-N5-A4RF-01 5 9052093 9052093 C T SEMA5A Missense_Mutation p.V913I 0.23 tolerated(0.57) benign(0.002) TCGA-N5-A4RF-01 5 9202131 9202131 C T SEMA5A Missense_Mutation p.E290K 0.32 deleterious(0.02) benign(0.125) TCGA-N5-A4RF-01 6 121769161 121769161 C G GJA1 3'UTR 0.57 TCGA-N5-A4RF-01 6 152706811 152706812 - A SYNE1 Frame_Shift_Ins p.K2884* 0.27 TCGA-N5-A4RF-01 6 26156600 26156600 G T HIST1H1E 5'UTR 0.43 TCGA-N5-A4RF-01 6 39883911 39883911 G A MOCS1 Missense_Mutation p.R162W 0.33 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RF-01 6 52318996 52318996 G A EFHC1 Missense_Mutation p.R276Q 0.22 tolerated(0.06) benign(0.273) TCGA-N5-A4RF-01 6 72892710 72892710 C A RIMS1 Silent p.S512S 0.45 TCGA-N5-A4RF-01 7 100815486 100815486 G A NAT16 Silent p.N328N 0.28 TCGA-N5-A4RF-01 7 100849443 100849443 G A PLOD3 3'UTR 0.31 TCGA-N5-A4RF-01 7 103281026 103281026 C A RELN Missense_Mutation p.C678F 0.62 deleterious(0.03) probably_damaging(0.996) TCGA-N5-A4RF-01 7 103301887 103301887 C A RELN Missense_Mutation p.R459S 0.22 deleterious(0) probably_damaging(0.983) TCGA-N5-A4RF-01 7 134853626 134853626 G A C7orf49 Silent p.L17L 0.42 TCGA-N5-A4RF-01 7 135323338 135323338 C T NUP205 Missense_Mutation p.L1767F 0.27 deleterious(0.01) benign(0.03) TCGA-N5-A4RF-01 7 149518605 149518605 G A SSPO RNA 0.40 TCGA-N5-A4RF-01 7 1527374 1527374 C T INTS1 Intron 0.62 TCGA-N5-A4RF-01 7 8258022 8258022 C T ICA1 Silent p.T164T 0.36 TCGA-N5-A4RF-01 8 144999757 144999757 C T PLEC Missense_Mutation p.R1584Q 0.92 unknown(0) TCGA-N5-A4RF-01 8 73479903 73479903 G C KCNB2 5'UTR 0.88 TCGA-N5-A4RF-01 9 23762158 23762158 A C ELAVL2 Missense_Mutation p.C25W 0.04 tolerated_low_confidence(0.16) possibly_damaging(0.57) TCGA-N5-A4RF-01 X 107976125 107976125 G A IRS4 Silent p.A1150A 0.13 TCGA-N5-A4RF-01 X 123538968 123538968 G A TENM1 Silent p.P1768P 0.35 TCGA-N5-A4RF-01 X 134948067 134948067 C A CT45A5 Missense_Mutation p.Q86H 0.46 tolerated(1) benign(0.002) TCGA-N5-A4RF-01 X 138724667 138724667 G C MCF2 Intron 0.44 TCGA-N5-A4RF-01 X 153295805 153295805 G A MECP2 3'UTR 0.41 TCGA-N5-A4RF-01 X 153581770 153581770 G T FLNA Silent p.P1972P 0.31 TCGA-N5-A4RF-01 X 154490295 154490295 G A RAB39B Silent p.Y145Y 0.45 TCGA-N5-A4RF-01 X 16870879 16870879 G A RBBP7 Missense_Mutation p.A337V 0.61 deleterious(0) probably_damaging(0.994) TCGA-N5-A4RF-01 X 24549846 24549846 T A PDK3 Missense_Mutation p.S346T 0.39 deleterious(0.01) probably_damaging(0.928) TCGA-N5-A4RF-01 X 32305742 32305742 C A DMD Missense_Mutation p.S2065I 0.30 possibly_damaging(0.607) TCGA-N5-A4RF-01 X 69699084 69699084 G A DLG3 Missense_Mutation p.R497Q 0.38 tolerated(0.06) benign(0.002) TCGA-N5-A4RJ-01 10 6506275 6506275 G A PRKCQ Missense_Mutation p.T482M 0.44 tolerated(0.07) benign(0.247) TCGA-N5-A4RJ-01 10 7214029 7214029 G A SFMBT2 Missense_Mutation p.S748L 0.17 tolerated(0.15) probably_damaging(0.996) TCGA-N5-A4RJ-01 11 60541407 60541407 A T MS4A15 Missense_Mutation p.H199L 0.91 tolerated(0.47) benign(0.002) TCGA-N5-A4RJ-01 11 66082813 66082813 A G CD248 Silent p.G562G 0.48 TCGA-N5-A4RJ-01 12 16704161 16704161 G A LMO3 Missense_Mutation p.R167C 0.68 deleterious(0) possibly_damaging(0.886) TCGA-N5-A4RJ-01 12 65857094 65857094 G A MSRB3 Missense_Mutation p.E191K 0.37 deleterious_low_confidence(0) possibly_damaging(0.524) TCGA-N5-A4RJ-01 13 28009312 28009312 A T GTF3A Nonsense_Mutation p.K306* 0.56 TCGA-N5-A4RJ-01 13 41768108 41768108 A C KBTBD7 Missense_Mutation p.F96V 0.43 deleterious(0.02) probably_damaging(1) TCGA-N5-A4RJ-01 13 48654103 48654103 G A MED4 Missense_Mutation p.R173W 0.31 deleterious(0) probably_damaging(1) TCGA-N5-A4RJ-01 16 29821543 29821543 A T MAZ 3'UTR 0.70 TCGA-N5-A4RJ-01 17 19642904 19642904 C T ALDH3A1 Missense_Mutation p.V345M 0.31 deleterious(0.01) benign(0.333) TCGA-N5-A4RJ-01 17 32687649 32687649 C T CCL1 Missense_Mutation p.A74T 0.38 deleterious(0.02) probably_damaging(0.971) TCGA-N5-A4RJ-01 17 34062267 34062267 C T RASL10B Missense_Mutation p.R22C 0.41 deleterious(0) possibly_damaging(0.568) TCGA-N5-A4RJ-01 17 37881332 37881332 G A ERBB2 Missense_Mutation p.V842I 0.42 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RJ-01 17 40253875 40253875 G C DHX58 Missense_Mutation p.I647M 0.16 tolerated(0.24) benign(0.039) TCGA-N5-A4RJ-01 17 556625 556625 C T VPS53 Missense_Mutation p.G172R 0.44 tolerated(0.09) benign(0.077) TCGA-N5-A4RJ-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.84 tolerated(0.11) benign(0.308) TCGA-N5-A4RJ-01 17 78346514 78346514 C T RNF213 Missense_Mutation p.S4244L 0.45 benign(0.006) TCGA-N5-A4RJ-01 17 9676126 9676126 C T DHRS7C Missense_Mutation p.V230M 0.82 tolerated(0.08) benign(0.011) TCGA-N5-A4RJ-01 19 11170774 11170774 C T SMARCA4 Missense_Mutation p.R1608W 0.30 possibly_damaging(0.908) TCGA-N5-A4RJ-01 19 41265493 41265493 G A SNRPA Missense_Mutation p.G135E 0.54 tolerated(0.23) benign(0.023) TCGA-N5-A4RJ-01 19 41450388 41450388 C G AC092071.1 5'Flank 0.44 TCGA-N5-A4RJ-01 19 46329516 46329516 G A SYMPK Missense_Mutation p.P766L 0.26 deleterious(0.03) benign(0.317) TCGA-N5-A4RJ-01 19 59074376 59074376 C A MZF1 Missense_Mutation p.R423L 0.28 deleterious(0.05) probably_damaging(0.997) TCGA-N5-A4RJ-01 19 59074528 59074528 C T MZF1 Silent p.L372L 0.32 TCGA-N5-A4RJ-01 1 161495873 161495873 G C HSPA6 Missense_Mutation p.Q475H 0.24 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-N5-A4RJ-01 1 167381351 167381351 A C POU2F1 Missense_Mutation p.T571P 0.21 deleterious(0.03) unknown(0) TCGA-N5-A4RJ-01 1 242042601 242042601 G C EXO1 Missense_Mutation p.A689P 0.47 tolerated(0.13) benign(0.221) TCGA-N5-A4RJ-01 1 2540796 2540796 G A MMEL1 Missense_Mutation p.R173C 0.41 deleterious(0) probably_damaging(0.96) TCGA-N5-A4RJ-01 1 94528265 94528265 C T ABCA4 Missense_Mutation p.R602Q 0.50 deleterious(0) probably_damaging(1) TCGA-N5-A4RJ-01 20 62331872 62331872 G A ARFRP1 Missense_Mutation p.R177C 0.06 deleterious(0.03) possibly_damaging(0.67) TCGA-N5-A4RJ-01 22 17488843 17488843 C T GAB4 Silent p.K54K 0.38 TCGA-N5-A4RJ-01 22 29879422 29879422 G A NEFH Silent p.A314A 0.25 TCGA-N5-A4RJ-01 22 32784075 32784075 G T RTCB Silent p.S474S 0.14 TCGA-N5-A4RJ-01 2 101648744 101648744 T C TBC1D8 Missense_Mutation p.N626S 0.38 deleterious(0.01) benign(0.323) TCGA-N5-A4RJ-01 2 112686937 112686937 G T MERTK Missense_Mutation p.G101V 0.34 deleterious(0.01) probably_damaging(0.988) TCGA-N5-A4RJ-01 2 128757879 128757879 A C SAP130 Splice_Site p.X365_splice 0.20 TCGA-N5-A4RJ-01 3 119276562 119276562 C T CD80 Missense_Mutation p.R5Q 0.32 tolerated(0.28) benign(0.062) TCGA-N5-A4RJ-01 3 138038355 138038355 T A NME9 Missense_Mutation p.I32F 0.22 tolerated(0.07) benign(0.187) TCGA-N5-A4RJ-01 3 178952084 178952084 C T PIK3CA Missense_Mutation p.H1047Y 0.49 tolerated(1) benign(0.008) TCGA-N5-A4RJ-01 3 48603954 48603954 C G COL7A1 Missense_Mutation p.A2783P 0.06 benign(0.307) TCGA-N5-A4RJ-01 3 49764567 49764567 G C IP6K1 Missense_Mutation p.D438E 0.52 tolerated(1) benign(0.002) TCGA-N5-A4RJ-01 3 7188289 7188289 C A GRM7 Missense_Mutation p.L224I 0.14 tolerated(0.21) benign(0.011) TCGA-N5-A4RJ-01 3 72799764 72799764 C G SHQ1 Missense_Mutation p.E469Q 0.46 tolerated_low_confidence(0.19) benign(0.053) TCGA-N5-A4RJ-01 4 153251907 153251907 G A FBXW7 Nonsense_Mutation p.R367* 0.34 TCGA-N5-A4RJ-01 4 83826061 83826061 G A THAP9 Missense_Mutation p.V85M 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-N5-A4RJ-01 5 179195869 179195869 G A MAML1 Missense_Mutation p.V584I 0.31 tolerated(0.35) benign(0.005) TCGA-N5-A4RJ-01 5 37049341 37049341 C T NIPBL Missense_Mutation p.R2298C 0.13 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RJ-01 5 74137476 74137476 T C FAM169A Missense_Mutation p.E9G 0.21 tolerated(0.2) benign(0.039) TCGA-N5-A4RJ-01 6 152554983 152554983 G A SYNE1 Missense_Mutation p.S6882L 0.37 benign(0.047) TCGA-N5-A4RJ-01 6 161530808 161530808 G T MAP3K4 Nonsense_Mutation p.E1420* 0.50 TCGA-N5-A4RJ-01 6 24596359 24596359 C T KIAA0319 Silent p.E181E 0.50 TCGA-N5-A4RJ-01 6 43155158 43155159 TT - CUL9 Frame_Shift_Del p.W522Efs*5 0.37 TCGA-N5-A4RJ-01 7 14741318 14741318 G A DGKB Silent p.F168F 0.26 TCGA-N5-A4RJ-01 7 150269569 150269569 C A GIMAP4 Silent p.I137I 0.28 TCGA-N5-A4RJ-01 7 71743757 71743757 A G CALN1 Missense_Mutation p.L53S 0.30 tolerated(0.1) probably_damaging(0.996) TCGA-N5-A4RJ-01 8 20107496 20107496 C T LZTS1 Missense_Mutation p.E510K 0.73 deleterious(0.01) probably_damaging(0.997) TCGA-N5-A4RJ-01 X 139865785 139865785 G A CDR1 Silent p.T249T 0.89 TCGA-N5-A4RJ-01 X 70607151 70607151 A G TAF1 Missense_Mutation p.H776R 0.84 deleterious(0) possibly_damaging(0.51) TCGA-N5-A4RJ-01 X 75004287 75004287 C A MAGEE2 Missense_Mutation p.W200C 0.38 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RM-01 10 49395266 49395266 G A FRMPD2 Silent p.L745L 0.28 TCGA-N5-A4RM-01 10 50959892 50959892 G A OGDHL Missense_Mutation p.R244W 0.52 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RM-01 10 86001097 86001097 G C LRIT1 Missense_Mutation p.I33M 0.10 tolerated(0.17) benign(0.005) TCGA-N5-A4RM-01 11 110327746 110327746 G A FDX1 Missense_Mutation p.D139N 0.11 deleterious(0) probably_damaging(1) TCGA-N5-A4RM-01 11 55595238 55595238 C - OR5L2 Frame_Shift_Del p.P183Lfs*3 0.29 TCGA-N5-A4RM-01 11 63764986 63764986 C T OTUB1 Missense_Mutation p.R262W 0.36 deleterious(0) probably_damaging(1) TCGA-N5-A4RM-01 11 64112227 64112227 G A CCDC88B Silent p.R738R 0.10 TCGA-N5-A4RM-01 12 132633385 132633385 G A NOC4L Silent p.P282P 0.55 TCGA-N5-A4RM-01 12 52985408 52985408 A C KRT72 Missense_Mutation p.I268S 0.14 tolerated(0.06) possibly_damaging(0.903) TCGA-N5-A4RM-01 12 55846759 55846759 C G OR6C2 Missense_Mutation p.I254M 0.26 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-N5-A4RM-01 12 57589461 57589461 G A LRP1 Missense_Mutation p.D2820N 0.48 benign(0.059) TCGA-N5-A4RM-01 15 25304703 25304703 C G SNORD116-3 3'Flank 0.77 TCGA-N5-A4RM-01 15 75654730 75654730 G A MAN2C1 Missense_Mutation p.A321V 0.11 tolerated(1) benign(0.03) TCGA-N5-A4RM-01 16 3063348 3063348 C G CLDN9 5'UTR 0.30 TCGA-N5-A4RM-01 16 9934842 9934842 C A GRIN2A Missense_Mutation p.G483V 0.25 deleterious(0.01) probably_damaging(1) TCGA-N5-A4RM-01 17 10433198 10433198 T G MYH2 Missense_Mutation p.E964A 0.07 deleterious(0) possibly_damaging(0.839) TCGA-N5-A4RM-01 17 3627230 3627230 A G GSG2 Translation_Start_Site p.M1? 0.89 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-N5-A4RM-01 17 3638132 3638132 C T ITGAE Silent p.L878L 0.87 TCGA-N5-A4RM-01 17 7577550 7577550 C T TP53 Missense_Mutation p.G244D 0.97 deleterious(0) probably_damaging(1) TCGA-N5-A4RM-01 17 79278424 79278424 A G LINC00482 RNA 0.08 TCGA-N5-A4RM-01 19 12975741 12975743 CCG - MAST1 In_Frame_Del p.R496del 0.85 TCGA-N5-A4RM-01 19 37367691 37367691 T G ZNF345 5'UTR 0.36 TCGA-N5-A4RM-01 19 43343784 43343784 A T PSG10P 3'Flank 0.44 TCGA-N5-A4RM-01 19 44515243 44515243 T - ZNF230 Frame_Shift_Del p.L352* 0.24 TCGA-N5-A4RM-01 1 1248278 1248278 C T CPSF3L Missense_Mutation p.A401T 0.50 deleterious(0.02) probably_damaging(0.97) TCGA-N5-A4RM-01 1 154318722 154318722 C T ATP8B2 Missense_Mutation p.R965W 0.49 tolerated(0.25) probably_damaging(0.964) TCGA-N5-A4RM-01 1 157660318 157660318 C G FCRL3 Missense_Mutation p.V473L 0.08 deleterious(0.01) possibly_damaging(0.459) TCGA-N5-A4RM-01 1 159002348 159002348 C T IFI16 Missense_Mutation p.P399L 0.43 deleterious(0.04) probably_damaging(0.967) TCGA-N5-A4RM-01 1 16202965 16202978 ACCCGGGAGGTACG - SPEN Frame_Shift_Del p.T225Rfs*22 0.33 TCGA-N5-A4RM-01 1 17570857 17570857 C T PADI1 3'UTR 0.31 TCGA-N5-A4RM-01 1 36558695 36558695 C T ADPRHL2 Intron 0.43 TCGA-N5-A4RM-01 20 3128656 3128656 C A FASTKD5 Missense_Mutation p.R354L 0.09 deleterious(0.01) benign(0) TCGA-N5-A4RM-01 20 40730876 40730876 C T PTPRT Missense_Mutation p.R1201Q 0.30 deleterious(0) probably_damaging(0.978) TCGA-N5-A4RM-01 20 52612494 52612494 G A BCAS1 Silent p.D273D 0.34 TCGA-N5-A4RM-01 21 31914007 31914007 C T KRTAP19-6 Missense_Mutation p.R49H 0.44 tolerated_low_confidence(0.59) unknown(0) TCGA-N5-A4RM-01 22 21084273 21084273 C A PI4KA Missense_Mutation p.D1439Y 0.44 tolerated(0.07) possibly_damaging(0.492) TCGA-N5-A4RM-01 2 136575373 136575373 C T LCT Silent p.R415R 0.39 TCGA-N5-A4RM-01 2 166165867 166165867 T A SCN2A Intron 0.60 TCGA-N5-A4RM-01 2 3341870 3341870 G T TSSC1 Silent p.V59V 0.95 TCGA-N5-A4RM-01 2 43452192 43452192 G A ZFP36L2 Missense_Mutation p.R251W 0.57 deleterious(0) possibly_damaging(0.876) TCGA-N5-A4RM-01 3 185643403 185643403 C G TRA2B Missense_Mutation p.R61T 0.12 tolerated_low_confidence(0.05) unknown(0) TCGA-N5-A4RM-01 3 42448441 42448441 G A LYZL4 Silent p.Y63Y 0.38 TCGA-N5-A4RM-01 3 52324395 52324395 C T GLYCTK Nonsense_Mutation p.R13* 0.88 TCGA-N5-A4RM-01 4 119473413 119473413 A G CEP170P1 RNA 0.41 TCGA-N5-A4RM-01 4 189068532 189068532 G A TRIML1 3'UTR 0.62 TCGA-N5-A4RM-01 4 7725547 7725547 G A SORCS2 Missense_Mutation p.V850M 0.52 deleterious(0) probably_damaging(0.994) TCGA-N5-A4RM-01 5 112198213 112198213 G T SRP19 Missense_Mutation p.C17F 0.12 deleterious(0) benign(0.136) TCGA-N5-A4RM-01 5 140242134 140242134 C A AC005609.1 3'UTR 0.58 TCGA-N5-A4RM-01 5 140615827 140615827 C T PCDHB18 RNA 0.44 TCGA-N5-A4RM-01 5 140793312 140793312 C T PCDHGA10 Silent p.A190A 0.34 TCGA-N5-A4RM-01 5 141044588 141044588 C T ARAP3 Missense_Mutation p.A901T 0.53 deleterious(0) probably_damaging(0.917) TCGA-N5-A4RM-01 5 149500558 149500558 G C PDGFRB Missense_Mutation p.L827V 0.43 deleterious(0.05) possibly_damaging(0.634) TCGA-N5-A4RM-01 5 78280984 78280984 G A ARSB Silent p.L30L 0.14 TCGA-N5-A4RM-01 6 160999636 160999636 G A LPA Nonsense_Mutation p.R1464* 0.48 TCGA-N5-A4RM-01 7 151845550 151845550 C T KMT2C Missense_Mutation p.A4488T 0.47 probably_damaging(1) TCGA-N5-A4RM-01 7 48494835 48494835 T G ABCA13 Missense_Mutation p.L4256R 0.10 probably_damaging(1) TCGA-N5-A4RM-01 7 5752492 5752492 C A RNF216 Missense_Mutation p.L612F 0.10 deleterious(0.01) benign(0.215) TCGA-N5-A4RM-01 7 87811399 87811399 A G ADAM22 Intron 0.36 TCGA-N5-A4RM-01 8 21931326 21931326 A C DMTN Missense_Mutation p.D272A 0.28 tolerated(0.27) possibly_damaging(0.902) TCGA-N5-A4RM-01 8 26627888 26627888 G A ADRA1A Silent p.G393G 0.50 TCGA-N5-A4RM-01 8 68084769 68084769 T G CSPP1 Missense_Mutation p.F978V 0.32 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RM-01 9 35906682 35906682 C G HRCT1 3'UTR 0.29 TCGA-N5-A4RM-01 9 35906730 35906730 C A HRCT1 3'UTR 0.27 TCGA-N5-A4RM-01 X 53432009 53432009 G A SMC1A Missense_Mutation p.R711W 0.83 deleterious(0) probably_damaging(1) TCGA-N5-A4RN-01 10 102748377 102748377 G T C10orf2 Missense_Mutation p.R137M 0.06 tolerated(0.12) benign(0.114) TCGA-N5-A4RN-01 10 107007067 107007067 T A SORCS3 Missense_Mutation p.V1028D 0.20 deleterious(0) probably_damaging(0.973) TCGA-N5-A4RN-01 10 121668600 121668601 AG - SEC23IP Frame_Shift_Del p.E384Vfs*26 0.15 TCGA-N5-A4RN-01 10 43088129 43088129 T G ZNF33B Missense_Mutation p.T757P 0.18 deleterious(0.01) possibly_damaging(0.873) TCGA-N5-A4RN-01 10 69918245 69918245 G T MYPN Missense_Mutation p.M440I 0.09 tolerated(0.18) benign(0.008) TCGA-N5-A4RN-01 10 75554072 75554072 C T ZSWIM8 Silent p.D931D 0.72 TCGA-N5-A4RN-01 10 96495297 96495297 T G CYP2C18 3'UTR 0.52 TCGA-N5-A4RN-01 11 113933967 113933967 C T ZBTB16 5'UTR 0.31 TCGA-N5-A4RN-01 11 117969704 117969704 C G TMPRSS4 Silent p.V16V 0.27 TCGA-N5-A4RN-01 11 118178014 118178014 G A CD3E Missense_Mutation p.G21R 0.61 tolerated(0.05) probably_damaging(0.979) TCGA-N5-A4RN-01 11 47282969 47282969 G A NR1H3 Missense_Mutation p.R226Q 0.27 tolerated(1) benign(0) TCGA-N5-A4RN-01 11 5443752 5443752 G T OR51Q1 Nonsense_Mutation p.G108* 0.60 TCGA-N5-A4RN-01 11 56468604 56468604 C A OR9G1 Silent p.V247V 0.14 TCGA-N5-A4RN-01 12 104492131 104492131 C T HCFC2 Missense_Mutation p.P584L 0.22 tolerated(0.12) benign(0.053) TCGA-N5-A4RN-01 12 132489700 132489700 C T EP400 Missense_Mutation p.P969L 0.46 unknown(0) TCGA-N5-A4RN-01 12 49054403 49054403 C A KANSL2 Splice_Site p.X325_splice 0.20 TCGA-N5-A4RN-01 12 57924490 57924490 C T DCTN2 Missense_Mutation p.M401I 0.60 tolerated(1) benign(0.003) TCGA-N5-A4RN-01 12 58177020 58177020 T C TSFM Missense_Mutation p.V62A 0.35 tolerated(0.49) benign(0.126) TCGA-N5-A4RN-01 12 66152702 66152702 C T RPSAP52 RNA 0.27 TCGA-N5-A4RN-01 13 48881414 48881414 A G RB1 Splice_Site p.X46_splice 0.91 TCGA-N5-A4RN-01 13 95114274 95114274 A T DCT Missense_Mutation p.F345I 0.29 tolerated(0.17) possibly_damaging(0.752) TCGA-N5-A4RN-01 14 101349485 101349485 G C RTL1 Missense_Mutation p.H547Q 0.89 tolerated(0.34) benign(0.009) TCGA-N5-A4RN-01 14 24679649 24679649 T A CHMP4A Missense_Mutation p.E215V 0.41 deleterious(0.04) benign(0.101) TCGA-N5-A4RN-01 14 50249133 50249133 T G KLHDC2 Silent p.V334V 0.27 TCGA-N5-A4RN-01 14 63858584 63858584 A G PPP2R5E Missense_Mutation p.V302A 0.23 deleterious(0) probably_damaging(0.994) TCGA-N5-A4RN-01 14 94770860 94770860 C T SERPINA6 Silent p.T371T 0.66 TCGA-N5-A4RN-01 15 72608246 72608246 G A CELF6 Silent p.C95C 0.13 TCGA-N5-A4RN-01 16 27503992 27503992 G A GTF3C1 Silent p.C973C 0.50 TCGA-N5-A4RN-01 16 3778746 3778746 A G CREBBP Missense_Mutation p.I2101T 0.90 unknown(0) TCGA-N5-A4RN-01 16 67579900 67579900 C T FAM65A Nonsense_Mutation p.R1166* 0.61 TCGA-N5-A4RN-01 16 71701133 71701133 G A PHLPP2 Nonsense_Mutation p.Q578* 0.36 TCGA-N5-A4RN-01 16 76587181 76587181 A G CNTNAP4 Silent p.E1075E 0.47 TCGA-N5-A4RN-01 16 85135890 85135890 G A FAM92B Missense_Mutation p.A194V 0.24 deleterious(0) probably_damaging(0.968) TCGA-N5-A4RN-01 17 33521054 33521054 G A SLC35G3 Silent p.G91G 0.91 TCGA-N5-A4RN-01 17 39872040 39872040 G C GAST Missense_Mutation p.K74N 0.16 deleterious_low_confidence(0.04) probably_damaging(0.937) TCGA-N5-A4RN-01 17 7577097 7577097 C T TP53 Missense_Mutation p.D281N 0.78 deleterious(0.01) probably_damaging(0.996) TCGA-N5-A4RN-01 18 10487757 10487757 G A APCDD1 Missense_Mutation p.E423K 0.14 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RN-01 18 29850241 29850241 G A GAREM Missense_Mutation p.R558W 0.19 tolerated(0.08) possibly_damaging(0.556) TCGA-N5-A4RN-01 18 43248429 43248429 A T SLC14A2 Missense_Mutation p.M675L 0.16 tolerated(0.19) benign(0.033) TCGA-N5-A4RN-01 18 8380347 8380347 A C PTPRM Silent p.T1280T 0.16 TCGA-N5-A4RN-01 19 39962347 39962347 C T SUPT5H Silent p.L643L 0.22 TCGA-N5-A4RN-01 19 41072112 41072112 T C SPTBN4 Silent p.D2061D 0.50 TCGA-N5-A4RN-01 19 55045110 55045110 A G KIR3DX1 Missense_Mutation p.N77S 0.16 tolerated(0.17) probably_damaging(0.964) TCGA-N5-A4RN-01 19 9073782 9073782 A G MUC16 Missense_Mutation p.L4555P 0.42 unknown(0) TCGA-N5-A4RN-01 1 100613620 100613620 A G TRMT13 Missense_Mutation p.I330V 0.31 tolerated(0.18) benign(0.042) TCGA-N5-A4RN-01 1 151774911 151774911 G T LINGO4 Missense_Mutation p.D90E 0.12 tolerated(0.14) probably_damaging(0.987) TCGA-N5-A4RN-01 1 166962019 166962019 G A MAEL Missense_Mutation p.C141Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-N5-A4RN-01 1 167663457 167663457 G A RCSD1 Missense_Mutation p.R131Q 0.09 tolerated(0.62) benign(0.067) TCGA-N5-A4RN-01 1 200584490 200584491 - T KIF14 Frame_Shift_Ins p.S454Ifs*8 0.31 TCGA-N5-A4RN-01 1 245775144 245775144 T G KIF26B Missense_Mutation p.F655C 0.25 deleterious(0) unknown(0) TCGA-N5-A4RN-01 1 46714224 46714224 C A RAD54L Missense_Mutation p.P15H 0.31 tolerated_low_confidence(0.17) benign(0.001) TCGA-N5-A4RN-01 1 54605311 54605311 C T CDCP2 Missense_Mutation p.G411D 0.68 deleterious_low_confidence(0.01) unknown(0) TCGA-N5-A4RN-01 1 62582864 62582864 G A INADL Missense_Mutation p.A1622T 0.08 tolerated(0.39) benign(0.069) TCGA-N5-A4RN-01 20 411089 411089 G T RBCK1 3'UTR 0.14 TCGA-N5-A4RN-01 20 44856148 44856148 G T CDH22 Silent p.T223T 0.22 TCGA-N5-A4RN-01 20 57564966 57564966 C T NELFCD Silent p.S255S 0.19 TCGA-N5-A4RN-01 20 61598623 61598623 C A SLC17A9 Intron 0.18 TCGA-N5-A4RN-01 22 32232998 32232998 T C DEPDC5 Silent p.C728C 0.46 TCGA-N5-A4RN-01 2 1652752 1652752 C T PXDN Missense_Mutation p.G934S 0.38 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RN-01 2 172822005 172822007 AGG - HAT1 In_Frame_Del p.G154del 0.31 TCGA-N5-A4RN-01 2 198949947 198949947 C T PLCL1 Missense_Mutation p.S569L 0.30 tolerated(0.13) benign(0.107) TCGA-N5-A4RN-01 2 55463904 55463904 C A MTIF2 Silent p.T688T 0.23 TCGA-N5-A4RN-01 2 60773229 60773229 A G BCL11A Missense_Mutation p.S88P 0.30 tolerated(0.12) benign(0.057) TCGA-N5-A4RN-01 2 89976340 89976340 C T IGKV2D-30 Missense_Mutation p.R71C 0.79 deleterious(0.04) benign(0.011) TCGA-N5-A4RN-01 3 101395550 101395550 C T ZBTB11 Missense_Mutation p.R70Q 0.93 deleterious_low_confidence(0) possibly_damaging(0.508) TCGA-N5-A4RN-01 3 180337633 180337633 A T CCDC39 Missense_Mutation p.N708K 0.19 tolerated(0.15) benign(0.002) TCGA-N5-A4RN-01 3 183818130 183818131 AT - HTR3E 5'Flank 0.23 TCGA-N5-A4RN-01 3 78683127 78683127 C T ROBO1 Missense_Mutation p.G1147R 0.29 deleterious(0.01) possibly_damaging(0.796) TCGA-N5-A4RN-01 3 98304286 98304286 G C CPOX Missense_Mutation p.R391G 0.25 deleterious(0) probably_damaging(1) TCGA-N5-A4RN-01 4 106157271 106157271 T - TET2 Frame_Shift_Del p.H724Qfs*27 0.26 TCGA-N5-A4RN-01 4 128878655 128878655 C A MFSD8 Splice_Site p.X52_splice 0.28 TCGA-N5-A4RN-01 4 144445586 144445586 C T SMARCA5 Silent p.T162T 0.30 TCGA-N5-A4RN-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.55 deleterious(0.03) probably_damaging(1) TCGA-N5-A4RN-01 4 73188778 73188778 G A ADAMTS3 Missense_Mutation p.H300Y 0.21 deleterious(0) possibly_damaging(0.866) TCGA-N5-A4RN-01 5 2749656 2749656 G C IRX2 Missense_Mutation p.F165L 0.05 deleterious(0) probably_damaging(0.992) TCGA-N5-A4RN-01 5 35954581 35954581 C T UGT3A1 Splice_Site p.X432_splice 0.20 TCGA-N5-A4RN-01 6 152823805 152823805 T A SYNE1 Missense_Mutation p.D284V 0.17 possibly_damaging(0.771) TCGA-N5-A4RN-01 6 15523076 15523076 G C DTNBP1 3'UTR 0.31 TCGA-N5-A4RN-01 6 32169084 32169084 G A NOTCH4 Missense_Mutation p.R1317W 0.16 deleterious(0.01) probably_damaging(0.932) TCGA-N5-A4RN-01 6 33391325 33391325 C T SYNGAP1 Missense_Mutation p.R47W 0.19 deleterious(0) possibly_damaging(0.824) TCGA-N5-A4RN-01 6 38645050 38645050 C T GLO1 3'UTR 0.22 TCGA-N5-A4RN-01 6 39162482 39162482 T C KCNK5 Missense_Mutation p.Y118C 0.18 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RN-01 6 52143605 52143605 C A MCM3 Missense_Mutation p.A317S 0.08 tolerated(0.28) benign(0.002) TCGA-N5-A4RN-01 6 76715225 76715225 G A IMPG1 Missense_Mutation p.T305M 0.16 tolerated(0.64) benign(0.023) TCGA-N5-A4RN-01 6 83846928 83846928 G T DOPEY1 Missense_Mutation p.G1056V 0.16 tolerated(0.08) benign(0.04) TCGA-N5-A4RN-01 7 136849062 136849062 C T hsa-mir-490 Intron 0.25 TCGA-N5-A4RN-01 7 15405139 15405139 C A AGMO Missense_Mutation p.E421D 0.47 deleterious(0.01) possibly_damaging(0.672) TCGA-N5-A4RN-01 7 63981662 63981662 G A ZNF680 Silent p.Y490Y 0.05 TCGA-N5-A4RN-01 7 96339192 96339192 T C SHFM1 5'UTR 0.95 TCGA-N5-A4RN-01 8 139144822 139144822 C T FAM135B 3'UTR 0.61 TCGA-N5-A4RN-01 8 59728107 59728107 C A TOX Missense_Mutation p.R394S 0.32 tolerated(0.2) probably_damaging(0.942) TCGA-N5-A4RN-01 8 86038971 86038971 T G LRRCC1 Silent p.A440A 0.35 TCGA-N5-A4RN-01 8 95403998 95403998 G A RAD54B Nonsense_Mutation p.R550* 0.30 TCGA-N5-A4RN-01 9 125315642 125315642 C A OR1N2 Missense_Mutation p.A65D 0.52 deleterious(0) possibly_damaging(0.844) TCGA-N5-A4RN-01 X 129306073 129306073 C A RAB33A Missense_Mutation p.P13T 0.50 tolerated_low_confidence(0.1) benign(0) TCGA-N5-A4RN-01 X 83403058 83403058 G A RPS6KA6 Missense_Mutation p.S111F 0.38 deleterious(0) possibly_damaging(0.467) TCGA-N5-A4RO-01 10 14939228 14939228 T C SUV39H2 Silent p.A187A 0.43 TCGA-N5-A4RO-01 10 16882377 16882377 G C CUBN Silent p.T3328T 0.42 TCGA-N5-A4RO-01 11 105483157 105483157 C T GRIA4 Silent p.N81N 0.69 TCGA-N5-A4RO-01 11 57335061 57335061 C A UBE2L6 Silent p.V8V 0.33 TCGA-N5-A4RO-01 12 10194101 10194101 C A CLEC9A 5'UTR 0.41 TCGA-N5-A4RO-01 12 57327822 57327822 G T SDR9C7 Missense_Mutation p.T75N 0.62 deleterious(0) probably_damaging(0.93) TCGA-N5-A4RO-01 13 100634935 100634935 C A ZIC2 Nonsense_Mutation p.S206* 0.10 TCGA-N5-A4RO-01 14 20612258 20612258 C A OR4N5 Missense_Mutation p.R122S 0.38 deleterious(0) possibly_damaging(0.454) TCGA-N5-A4RO-01 15 38811527 38811527 C T RASGRP1 Silent p.K124K 0.46 TCGA-N5-A4RO-01 15 41689306 41689306 A G NDUFAF1 5'UTR 0.25 TCGA-N5-A4RO-01 15 45365863 45365863 T G SORD 3'UTR 0.27 TCGA-N5-A4RO-01 15 52356849 52356849 C G MAPK6 Missense_Mutation p.F606L 0.43 tolerated_low_confidence(1) benign(0) TCGA-N5-A4RO-01 15 54003562 54003562 A G WDR72 Silent p.G276G 0.11 TCGA-N5-A4RO-01 16 71509657 71509657 T C ZNF19 Missense_Mutation p.R265G 0.41 deleterious(0) probably_damaging(0.988) TCGA-N5-A4RO-01 16 89620289 89620289 C T SPG7 Missense_Mutation p.S675F 0.46 deleterious(0) probably_damaging(0.982) TCGA-N5-A4RO-01 17 18060487 18060487 G A MYO15A Missense_Mutation p.V2911M 0.29 unknown(0) TCGA-N5-A4RO-01 17 39092918 39092920 GCC - KRT23 5'UTR 0.90 TCGA-N5-A4RO-01 17 44952563 44952563 C G WNT9B Missense_Mutation p.T144S 0.93 tolerated(0.13) probably_damaging(0.998) TCGA-N5-A4RO-01 17 47696730 47696730 G C SPOP Missense_Mutation p.P73R 0.93 deleterious(0) probably_damaging(1) TCGA-N5-A4RO-01 17 51900315 51900315 G A KIF2B 5'UTR 0.50 TCGA-N5-A4RO-01 17 5338195 5338195 C T C1QBP Missense_Mutation p.E159K 0.08 deleterious(0) possibly_damaging(0.525) TCGA-N5-A4RO-01 17 7579575 7579575 G - TP53 Frame_Shift_Del p.Q38Kfs*6 0.48 TCGA-N5-A4RO-01 19 30935256 30935256 G C ZNF536 Missense_Mutation p.V263L 0.05 tolerated(0.5) benign(0.001) TCGA-N5-A4RO-01 19 33639792 33639792 A G WDR88 Missense_Mutation p.I219V 0.18 tolerated(0.09) benign(0.004) TCGA-N5-A4RO-01 19 37644265 37644265 G C ZNF585A Missense_Mutation p.T124S 0.17 tolerated(0.08) benign(0.001) TCGA-N5-A4RO-01 19 55331226 55331226 G C KIR3DL1 Missense_Mutation p.E138D 0.26 tolerated(0.14) benign(0.431) TCGA-N5-A4RO-01 1 10699459 10699459 C T CASZ1 Missense_Mutation p.G1607D 0.36 tolerated_low_confidence(0.43) benign(0.117) TCGA-N5-A4RO-01 1 150933333 150933333 G A SETDB1 Missense_Mutation p.R932Q 0.39 deleterious(0.01) probably_damaging(0.916) TCGA-N5-A4RO-01 1 151789213 151789213 G A RORC Silent p.I75I 0.57 TCGA-N5-A4RO-01 1 152732884 152732884 C T KPRP Missense_Mutation p.R274C 0.62 tolerated(0.1) benign(0.051) TCGA-N5-A4RO-01 1 181702035 181702035 G A CACNA1E Missense_Mutation p.R938Q 0.33 tolerated(0.2) benign(0) TCGA-N5-A4RO-01 1 220936325 220936325 A G MARC2 Missense_Mutation p.E228G 0.34 deleterious(0.03) benign(0.125) TCGA-N5-A4RO-01 1 59004951 59004951 C T OMA1 Missense_Mutation p.G6R 0.32 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-N5-A4RO-01 20 43933030 43933030 C T MATN4 Missense_Mutation p.A161T 0.09 possibly_damaging(0.801) TCGA-N5-A4RO-01 20 54824467 54824467 G A MC3R Missense_Mutation p.V190M 0.54 tolerated(0.08) probably_damaging(0.98) TCGA-N5-A4RO-01 21 32624411 32624411 G C TIAM1 Missense_Mutation p.T353S 0.30 tolerated(0.65) benign(0.009) TCGA-N5-A4RO-01 2 175624069 175624069 C A CHRNA1 Missense_Mutation p.R75L 0.09 deleterious(0.02) probably_damaging(0.949) TCGA-N5-A4RO-01 2 179594664 179594664 G C TTN Missense_Mutation p.Q6106E 0.33 TCGA-N5-A4RO-01 2 206921004 206921004 G C INO80D Missense_Mutation p.F294L 0.29 tolerated(0.68) benign(0) TCGA-N5-A4RO-01 2 207569605 207569605 G A DYTN Nonsense_Mutation p.R149* 0.57 TCGA-N5-A4RO-01 2 29293880 29293880 G A C2orf71 Missense_Mutation p.P1083L 0.31 deleterious(0.03) benign(0.024) TCGA-N5-A4RO-01 3 118931403 118931403 C G B4GALT4 Missense_Mutation p.G343A 0.26 tolerated_low_confidence(0.33) benign(0.003) TCGA-N5-A4RO-01 3 178952119 178952119 C G PIK3CA Missense_Mutation p.I1058M 0.40 tolerated(0.33) benign(0.035) TCGA-N5-A4RO-01 3 179332847 179332847 G A NDUFB5 Silent p.L71L 0.27 TCGA-N5-A4RO-01 3 33592874 33592874 A G CLASP2 Missense_Mutation p.I1016T 0.11 tolerated(0.18) benign(0.06) TCGA-N5-A4RO-01 3 48637920 48637920 A T UQCRC1 Missense_Mutation p.L403Q 0.95 deleterious(0.01) probably_damaging(0.995) TCGA-N5-A4RO-01 4 153249510 153249510 C A FBXW7 Missense_Mutation p.G423V 0.42 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RO-01 4 1944151 1944151 C T WHSC1 Intron 0.10 TCGA-N5-A4RO-01 4 93225746 93225746 C T GRID2 5'UTR 0.50 TCGA-N5-A4RO-01 5 156712414 156712414 G A CYFIP2 Missense_Mutation p.D15N 0.60 tolerated(0.13) benign(0.045) TCGA-N5-A4RO-01 5 176793982 176793982 G A RGS14 Missense_Mutation p.E144K 0.38 deleterious(0) probably_damaging(1) TCGA-N5-A4RO-01 5 205319 205319 C T CCDC127 3'UTR 0.54 TCGA-N5-A4RO-01 6 26250542 26250542 C G HIST1H3F Missense_Mutation p.E98Q 0.66 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-N5-A4RO-01 6 56357765 56357765 C A DST Missense_Mutation p.L4216F 0.29 probably_damaging(1) TCGA-N5-A4RO-01 6 57512489 57512489 T C PRIM2 3'UTR 0.07 TCGA-N5-A4RO-01 7 100683707 100683707 G T MUC17 Missense_Mutation p.A3004S 0.26 probably_damaging(0.98) TCGA-N5-A4RO-01 7 11871427 11871427 G A THSD7A Missense_Mutation p.A49V 0.50 tolerated(0.07) benign(0.021) TCGA-N5-A4RO-01 7 127235409 127235409 C T FSCN3 Nonsense_Mutation p.R65* 0.25 TCGA-N5-A4RO-01 7 141800609 141800609 A G MGAM Missense_Mutation p.K1732E 0.45 deleterious(0.02) benign(0.003) TCGA-N5-A4RO-01 7 150094611 150094611 C T ZNF775 Nonsense_Mutation p.Q348* 0.25 TCGA-N5-A4RO-01 7 76054351 76054351 C A ZP3 Missense_Mutation p.P24T 0.22 tolerated(0.14) benign(0.01) TCGA-N5-A4RO-01 8 139164617 139164617 G A FAM135B Nonsense_Mutation p.R701* 0.33 TCGA-N5-A4RO-01 9 109765634 109765634 G A ZNF462 Silent p.K2372K 0.05 TCGA-N5-A4RO-01 9 18775890 18775890 T C ADAMTSL1 Silent p.C849C 0.50 TCGA-N5-A4RO-01 X 105876451 105876451 G A CXorf57 Silent p.S424S 0.80 TCGA-N5-A4RO-01 X 17762205 17762205 C A SCML1 5'UTR 0.36 TCGA-N5-A4RO-01 X 65242162 65242162 C A VSIG4 Silent p.L381L 0.22 TCGA-N5-A4RO-01 X 65242163 65242163 A G VSIG4 Missense_Mutation p.L381P 0.21 deleterious(0) possibly_damaging(0.87) TCGA-N5-A4RO-01 X 71350557 71350557 T A RGAG4 Missense_Mutation p.K278N 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-N5-A4RS-01 10 105139460 105139460 G T TAF5 Missense_Mutation p.K403N 0.40 deleterious(0.03) probably_damaging(0.991) TCGA-N5-A4RS-01 10 5144364 5144364 T C AKR1C3 Silent p.V214V 0.40 TCGA-N5-A4RS-01 11 1155683 1155683 G A MUC5AC Missense_Mutation p.R124H 0.93 deleterious(0.03) benign(0.062) TCGA-N5-A4RS-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.75 deleterious(0.04) probably_damaging(0.993) TCGA-N5-A4RS-01 12 9075367 9075367 C G PHC1 Missense_Mutation p.H199D 0.47 tolerated(0.43) possibly_damaging(0.875) TCGA-N5-A4RS-01 14 74951225 74951225 G A NPC2 Missense_Mutation p.P86S 0.41 deleterious(0.02) benign(0.213) TCGA-N5-A4RS-01 15 40398008 40398008 G A BMF Nonsense_Mutation p.R94* 0.40 TCGA-N5-A4RS-01 15 73616239 73616239 C T HCN4 Missense_Mutation p.G732D 0.43 deleterious(0.01) unknown(0) TCGA-N5-A4RS-01 15 89021195 89021195 G A MRPS11 Silent p.K190K 0.54 TCGA-N5-A4RS-01 17 33289163 33289164 CA - ZNF830 Frame_Shift_Del p.S193Cfs*10 0.36 TCGA-N5-A4RS-01 17 7578556 7578556 T G TP53 Splice_Site p.X126_splice 0.88 TCGA-N5-A4RS-01 18 61570285 61570285 G A SERPINB2 Missense_Mutation p.A332T 0.41 deleterious(0) probably_damaging(1) TCGA-N5-A4RS-01 19 54973222 54973222 C G LENG9 3'UTR 0.37 TCGA-N5-A4RS-01 1 110596559 110596559 G A STRIP1 3'UTR 0.27 TCGA-N5-A4RS-01 1 150933180 150933181 GT - SETDB1 Frame_Shift_Del p.S881Rfs*18 0.22 TCGA-N5-A4RS-01 1 160168791 160168791 C A CASQ1 Missense_Mutation p.T311N 0.37 deleterious(0.03) benign(0.441) TCGA-N5-A4RS-01 1 206331351 206331351 C T CTSE 3'UTR 0.12 TCGA-N5-A4RS-01 1 206331355 206331355 T C CTSE 3'UTR 0.13 TCGA-N5-A4RS-01 1 22986093 22986093 C T C1QB Silent p.G48G 0.36 TCGA-N5-A4RS-01 1 231487057 231487057 A - SPRTN Frame_Shift_Del p.H153Lfs*58 0.16 TCGA-N5-A4RS-01 20 10653632 10653635 AACT - JAG1 Frame_Shift_Del p.Q34Pfs*11 0.23 TCGA-N5-A4RS-01 20 35061024 35061024 G A DLGAP4 Missense_Mutation p.A302T 0.17 deleterious(0.03) benign(0.023) TCGA-N5-A4RS-01 21 14982927 14982927 C T POTED Silent p.S126S 0.36 TCGA-N5-A4RS-01 21 9907290 9907290 C T TEKT4P2 RNA 0.17 TCGA-N5-A4RS-01 2 219249939 219249939 G A SLC11A1 Missense_Mutation p.V115M 0.26 deleterious(0.01) probably_damaging(0.973) TCGA-N5-A4RS-01 2 71582903 71582903 C A ZNF638 Missense_Mutation p.R458S 0.30 deleterious(0) probably_damaging(0.954) TCGA-N5-A4RS-01 3 178921552 178921552 A C PIK3CA Missense_Mutation p.N345T 0.53 deleterious(0.05) probably_damaging(1) TCGA-N5-A4RS-01 3 9874913 9874913 G T TTLL3 Missense_Mutation p.Q703H 0.31 deleterious(0.01) possibly_damaging(0.807) TCGA-N5-A4RS-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.39 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RS-01 4 184606530 184606530 T G TRAPPC11 Missense_Mutation p.I579R 0.51 deleterious(0) possibly_damaging(0.712) TCGA-N5-A4RS-01 4 66218763 66218763 C A EPHA5 Missense_Mutation p.L765F 0.38 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RS-01 5 67576381 67576382 - C PIK3R1 Frame_Shift_Ins p.Q221Pfs*8 0.38 TCGA-N5-A4RS-01 6 169626326 169626326 G A THBS2 Silent p.D829D 0.49 TCGA-N5-A4RS-01 6 90276788 90276788 C G ANKRD6 Missense_Mutation p.N31K 0.44 tolerated(0.07) possibly_damaging(0.78) TCGA-N5-A4RS-01 8 142441037 142441037 G A PTP4A3 Missense_Mutation p.G139R 0.44 deleterious(0.03) probably_damaging(1) TCGA-N5-A4RS-01 8 145661426 145661426 C T TONSL Missense_Mutation p.R797Q 0.79 tolerated(0.22) benign(0.04) TCGA-N5-A4RS-01 X 112022454 112022454 C T AMOT Silent p.P976P 0.53 TCGA-N5-A4RS-01 X 119513578 119513578 G T ATP1B4 3'UTR 0.45 TCGA-N5-A4RS-01 X 153131272 153131272 G A L1CAM Missense_Mutation p.P812S 0.47 deleterious(0.01) probably_damaging(1) TCGA-N5-A4RT-01 10 103547200 103547200 C G MGEA5 Missense_Mutation p.M845I 0.90 tolerated(0.52) benign(0) TCGA-N5-A4RT-01 10 134671120 134671120 C A TTC40 Missense_Mutation p.V1850F 0.54 deleterious(0.01) benign(0.006) TCGA-N5-A4RT-01 10 16882348 16882348 T G CUBN Missense_Mutation p.Q3338P 0.35 deleterious(0) benign(0.351) TCGA-N5-A4RT-01 11 119182524 119182524 T G MCAM Missense_Mutation p.I427L 0.93 deleterious(0.01) benign(0.213) TCGA-N5-A4RT-01 11 32460592 32460592 C A WT1 5'Flank 0.37 TCGA-N5-A4RT-01 11 47182920 47182920 C A C11orf49 Intron 0.10 TCGA-N5-A4RT-01 11 47360082 47360082 A T MYBPC3 Missense_Mutation p.V766D 0.14 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 11 6129437 6129437 T G OR56B4 Silent p.T143T 0.31 TCGA-N5-A4RT-01 11 621243 621243 G A CDHR5 Missense_Mutation p.P209L 0.32 tolerated(0.32) benign(0.209) TCGA-N5-A4RT-01 11 62559825 62559825 C T NXF1 3'UTR 0.54 TCGA-N5-A4RT-01 11 64563758 64563758 G A MAP4K2 Missense_Mutation p.R580C 0.19 deleterious(0) probably_damaging(0.997) TCGA-N5-A4RT-01 11 64662330 64662330 C G ATG2A 3'UTR 0.26 TCGA-N5-A4RT-01 11 65480118 65480118 T G KAT5 Intron 0.25 TCGA-N5-A4RT-01 11 68305235 68305235 C G PPP6R3 Missense_Mutation p.Q35E 0.28 deleterious(0) probably_damaging(0.924) TCGA-N5-A4RT-01 12 112622580 112622580 C T HECTD4 Missense_Mutation p.R3251H 0.17 probably_damaging(0.998) TCGA-N5-A4RT-01 12 49999203 49999203 G A FAM186B Silent p.L20L 0.31 TCGA-N5-A4RT-01 12 53433961 53433961 C G EIF4B Missense_Mutation p.S597C 0.26 tolerated_low_confidence(0.12) benign(0.004) TCGA-N5-A4RT-01 12 56705098 56705098 C T CNPY2 Missense_Mutation p.R102H 0.51 tolerated(0.13) probably_damaging(0.993) TCGA-N5-A4RT-01 12 5941713 5941713 C G ANO2 Missense_Mutation p.Q226H 0.27 tolerated(0.23) benign(0.001) TCGA-N5-A4RT-01 12 6692406 6692406 G A CHD4 Missense_Mutation p.R1340C 0.38 deleterious(0.02) probably_damaging(0.965) TCGA-N5-A4RT-01 12 72956730 72956730 C G TRHDE Missense_Mutation p.T606R 0.46 tolerated(0.07) benign(0.013) TCGA-N5-A4RT-01 14 64694247 64694247 A C SYNE2 3'Flank 0.46 TCGA-N5-A4RT-01 15 34018592 34018592 C A RYR3 Silent p.I2306I 0.50 TCGA-N5-A4RT-01 15 96880650 96880650 C T NR2F2 Silent p.Y348Y 0.70 TCGA-N5-A4RT-01 16 50745263 50745263 G C NOD2 Missense_Mutation p.G481R 0.39 deleterious(0) probably_damaging(0.97) TCGA-N5-A4RT-01 17 10404746 10404746 C T MYH1 Missense_Mutation p.R1140H 0.85 deleterious(0.01) probably_damaging(1) TCGA-N5-A4RT-01 17 14673498 14673498 T A AC005863.1 RNA 0.50 TCGA-N5-A4RT-01 17 21075510 21075510 G T DHRS7B Splice_Site p.X67_splice 0.94 TCGA-N5-A4RT-01 17 30594827 30594827 C G RHBDL3 Intron 0.59 TCGA-N5-A4RT-01 17 45689855 45689855 G T NPEPPS Missense_Mutation p.V709F 0.41 deleterious(0) possibly_damaging(0.802) TCGA-N5-A4RT-01 17 54558122 54558122 C G ANKFN1 Nonsense_Mutation p.Y681* 0.35 TCGA-N5-A4RT-01 17 7011223 7011223 C T ASGR2 Missense_Mutation p.G119D 0.96 tolerated(0.24) benign(0.327) TCGA-N5-A4RT-01 17 74722601 74722601 C T JMJD6 5'UTR 0.23 TCGA-N5-A4RT-01 17 7577559 7577559 G T TP53 Missense_Mutation p.S241Y 0.91 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 18 74700335 74700335 C T RP11-862L9.3 3'Flank 0.38 TCGA-N5-A4RT-01 19 41707232 41707232 G T CYP2S1 Missense_Mutation p.V311F 0.28 deleterious(0) benign(0.043) TCGA-N5-A4RT-01 19 44660704 44660704 G A ZNF234 Missense_Mutation p.D179N 0.29 tolerated(0.5) benign(0.008) TCGA-N5-A4RT-01 19 49228098 49228098 G A RASIP1 Silent p.G749G 0.30 TCGA-N5-A4RT-01 19 9058814 9058814 T A MUC16 Missense_Mutation p.K9544N 0.51 unknown(0) TCGA-N5-A4RT-01 1 153312868 153312868 G T PGLYRP4 Missense_Mutation p.D271E 0.36 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RT-01 1 154988736 154988736 G C ZBTB7B Missense_Mutation p.E433Q 0.39 deleterious(0) probably_damaging(0.979) TCGA-N5-A4RT-01 1 155013892 155013892 G A DCST1 Missense_Mutation p.R184K 0.09 tolerated(1) benign(0) TCGA-N5-A4RT-01 1 182850453 182850453 C T DHX9 Silent p.F893F 0.53 TCGA-N5-A4RT-01 1 19200974 19200974 C A ALDH4A1 Missense_Mutation p.G521V 0.07 deleterious(0) probably_damaging(0.989) TCGA-N5-A4RT-01 1 19200975 19200975 C A ALDH4A1 Missense_Mutation p.G521W 0.08 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RT-01 1 205053392 205053392 C G TMEM81 Silent p.L19L 0.46 TCGA-N5-A4RT-01 1 237957189 237957189 G C RYR2 Missense_Mutation p.R4602P 0.59 probably_damaging(0.936) TCGA-N5-A4RT-01 1 237957190 237957190 A G RYR2 Silent p.R4602R 0.59 TCGA-N5-A4RT-01 1 24121215 24121218 CTGT - LYPLA2 Frame_Shift_Del p.V231N 0.31 TCGA-N5-A4RT-01 1 26691433 26691433 G T ZNF683 Missense_Mutation p.P202T 0.26 tolerated(0.06) possibly_damaging(0.869) TCGA-N5-A4RT-01 1 35652661 35652661 C T SFPQ Missense_Mutation p.E643K 0.16 deleterious(0.02) possibly_damaging(0.636) TCGA-N5-A4RT-01 21 32513671 32513671 C T TIAM1 Silent p.A1209A 0.25 TCGA-N5-A4RT-01 21 44840174 44840174 G A SIK1 Silent p.Y304Y 0.56 TCGA-N5-A4RT-01 22 46657752 46657752 A C PKDREJ Missense_Mutation p.F490V 0.46 tolerated(1) benign(0.001) TCGA-N5-A4RT-01 22 46804949 46804949 C G CELSR1 Missense_Mutation p.E1724Q 0.94 tolerated(0.47) benign(0.425) TCGA-N5-A4RT-01 22 50686488 50686488 C A HDAC10 Missense_Mutation p.A390S 0.09 tolerated(0.39) benign(0.04) TCGA-N5-A4RT-01 2 114195425 114195425 A G CBWD2 5'UTR 0.75 TCGA-N5-A4RT-01 2 179639016 179639016 G C TTN Silent p.V2325V 0.26 TCGA-N5-A4RT-01 2 198285262 198285262 T G SF3B1 Missense_Mutation p.D102A 0.68 deleterious(0.01) possibly_damaging(0.743) TCGA-N5-A4RT-01 2 226378110 226378110 G T NYAP2 Missense_Mutation p.G82V 0.32 tolerated(0.78) benign(0.025) TCGA-N5-A4RT-01 2 45812822 45812822 C G SRBD1 Missense_Mutation p.R247P 0.15 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 2 46602865 46602865 G A EPAS1 Missense_Mutation p.R308Q 0.32 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 2 64780209 64780209 G T AFTPH Missense_Mutation p.G534V 0.22 deleterious(0.02) possibly_damaging(0.599) TCGA-N5-A4RT-01 2 70096956 70096956 G A GMCL1 Missense_Mutation p.G442R 0.26 tolerated(0.16) benign(0.001) TCGA-N5-A4RT-01 2 74491273 74491273 C T SLC4A5 Splice_Site p.X239_splice 0.25 TCGA-N5-A4RT-01 2 85577956 85577956 C A RETSAT Nonsense_Mutation p.E182* 0.08 TCGA-N5-A4RT-01 2 85768241 85768241 G C MAT2A Missense_Mutation p.D43H 0.19 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 2 86274381 86274381 G T POLR1A Nonsense_Mutation p.C880* 0.14 TCGA-N5-A4RT-01 2 97274353 97274353 C T KANSL3 Missense_Mutation p.V545M 0.18 tolerated_low_confidence(0.5) benign(0.009) TCGA-N5-A4RT-01 3 101535731 101535731 C T NXPE3 Missense_Mutation p.R339C 0.50 deleterious(0.01) possibly_damaging(0.724) TCGA-N5-A4RT-01 3 131404727 131404727 G A CPNE4 Nonsense_Mutation p.R195* 0.40 TCGA-N5-A4RT-01 3 141163673 141163673 A G ZBTB38 Missense_Mutation p.I815V 0.07 tolerated(0.19) benign(0.055) TCGA-N5-A4RT-01 3 165547849 165547849 C A BCHE Missense_Mutation p.D325Y 0.97 tolerated(0.06) probably_damaging(0.963) TCGA-N5-A4RT-01 3 178921552 178921552 A T PIK3CA Missense_Mutation p.N345I 0.97 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 4 10445496 10445496 C T ZNF518B Silent p.A819A 0.20 TCGA-N5-A4RT-01 4 121739545 121739545 C A PRDM5 Missense_Mutation p.G205W 0.32 deleterious(0) probably_damaging(0.996) TCGA-N5-A4RT-01 4 121958225 121958225 C T NDNF Missense_Mutation p.V301I 0.49 tolerated(0.11) benign(0.003) TCGA-N5-A4RT-01 4 141578966 141578966 C T TBC1D9 Missense_Mutation p.G641D 0.35 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 4 153250906 153250906 G A FBXW7 Missense_Mutation p.T385I 0.57 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 4 23886369 23886369 C G PPARGC1A Intron 0.32 TCGA-N5-A4RT-01 4 982659 982659 G A SLC26A1 Missense_Mutation p.R690C 0.09 tolerated(0.21) benign(0.017) TCGA-N5-A4RT-01 5 1318557 1318557 A C CLPTM1L Missense_Mutation p.V515G 0.10 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RT-01 5 23526781 23526781 G A PRDM9 Silent p.E528E 0.46 TCGA-N5-A4RT-01 5 26881282 26881282 G A CDH9 Missense_Mutation p.A778V 0.65 deleterious(0.01) probably_damaging(0.996) TCGA-N5-A4RT-01 5 45396744 45396744 C A HCN1 Silent p.G360G 0.22 TCGA-N5-A4RT-01 6 111650901 111650901 T G REV3L Missense_Mutation p.E2692A 0.48 deleterious(0) probably_damaging(0.923) TCGA-N5-A4RT-01 6 55142223 55142223 C A HCRTR2 Missense_Mutation p.Q270K 0.20 tolerated(0.36) benign(0.006) TCGA-N5-A4RT-01 6 70646733 70646733 C A COL19A1 Silent p.A268A 0.07 TCGA-N5-A4RT-01 6 74363526 74363526 C A SLC17A5 Silent p.R28R 0.33 TCGA-N5-A4RT-01 6 7581043 7581043 C - DSP Frame_Shift_Del p.I1540Mfs*12 0.20 TCGA-N5-A4RT-01 7 100677014 100677014 G A MUC17 Missense_Mutation p.D773N 0.29 unknown(0) TCGA-N5-A4RT-01 7 100730756 100730756 C T TRIM56 Missense_Mutation p.R55C 0.26 tolerated(0.12) benign(0.091) TCGA-N5-A4RT-01 7 142378879 142378879 C A MTRNR2L6 3'Flank 0.44 TCGA-N5-A4RT-01 7 1997278 1997278 G C MAD1L1 Missense_Mutation p.R528G 0.10 deleterious(0) benign(0.426) TCGA-N5-A4RT-01 7 27169062 27169062 C T HOXA4 Missense_Mutation p.A249T 0.49 deleterious(0) possibly_damaging(0.901) TCGA-N5-A4RT-01 7 44574199 44574199 G T NPC1L1 Silent p.G671G 0.21 TCGA-N5-A4RT-01 7 63796701 63796701 C T ZNF736 Missense_Mutation p.S23F 0.64 deleterious(0.05) possibly_damaging(0.676) TCGA-N5-A4RT-01 8 113318340 113318340 T C CSMD3 Missense_Mutation p.Y2656C 0.35 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RT-01 8 120599309 120599309 G C ENPP2 Missense_Mutation p.P457R 0.26 tolerated(0.22) probably_damaging(0.991) TCGA-N5-A4RT-01 8 37985968 37985968 A T ASH2L Missense_Mutation p.Q442L 0.58 deleterious(0.04) benign(0.032) TCGA-N5-A4RT-01 8 38260158 38260158 C A LETM2 Missense_Mutation p.T320K 0.32 tolerated(0.98) benign(0.022) TCGA-N5-A4RT-01 8 55533846 55533846 C A RP1 Missense_Mutation p.S107Y 0.08 deleterious(0) probably_damaging(1) TCGA-N5-A4RT-01 9 101832029 101832029 G T COL15A1 Missense_Mutation p.R1343L 0.11 deleterious(0) probably_damaging(0.973) TCGA-N5-A4RT-01 9 104086318 104086318 G A LPPR1 Silent p.A319A 0.32 TCGA-N5-A4RT-01 9 134379641 134379641 G C POMT1 Silent p.T12T 0.90 TCGA-N5-A4RT-01 9 140772533 140772533 G A CACNA1B Missense_Mutation p.A50T 0.33 deleterious(0) benign(0.068) TCGA-N5-A4RT-01 9 15000321 15000321 G A RP11-54D18.3 RNA 0.50 TCGA-N5-A4RT-01 9 35957351 35957351 C G OR2S2 Missense_Mutation p.V249L 0.55 deleterious(0) possibly_damaging(0.562) TCGA-N5-A4RT-01 X 129630083 129630083 A C RP1-274L7.1 Intron 0.26 TCGA-N5-A4RT-01 X 15864064 15864064 G T AP1S2 Missense_Mutation p.H84N 0.35 deleterious(0) probably_damaging(0.999) TCGA-N5-A4RT-01 X 215882 215882 C T PLCXD1 Silent p.V284V 0.10 TCGA-N5-A4RT-01 X 39931673 39931673 G A BCOR Nonsense_Mutation p.R976* 0.21 TCGA-N5-A4RT-01 X 48933595 48933595 T A WDR45 Missense_Mutation p.D150V 0.24 tolerated(0.21) benign(0.026) TCGA-N5-A4RT-01 X 51487066 51487066 A G GSPT2 Missense_Mutation p.E115G 0.18 tolerated(0.16) benign(0.002) TCGA-N5-A4RT-01 X 54587084 54587084 C G GNL3L 3'UTR 0.29 TCGA-N5-A4RT-01 X 70350051 70350051 A C MED12 Missense_Mutation p.K1345T 0.19 benign(0.035) TCGA-N5-A4RT-01 X 70356869 70356869 A G MED12 Silent p.P1847P 0.36 TCGA-N5-A4RT-01 X 85211373 85211373 C T CHM Silent p.E317E 0.22 TCGA-N5-A4RU-01 10 102689755 102689755 G A FAM178A Splice_Site p.X778_splice 0.37 TCGA-N5-A4RU-01 10 116606948 116606948 C G FAM160B1 Missense_Mutation p.H556Q 0.12 tolerated(0.59) benign(0.05) TCGA-N5-A4RU-01 10 30984944 30984944 C T SVILP1 RNA 0.11 TCGA-N5-A4RU-01 10 38344803 38344803 A T ZNF33A Missense_Mutation p.H584L 0.32 deleterious(0.01) benign(0.274) TCGA-N5-A4RU-01 10 55568610 55568610 T C PCDH15 Missense_Mutation p.S668G 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-N5-A4RU-01 10 91162764 91162764 A G IFIT1 Silent p.L244L 0.62 TCGA-N5-A4RU-01 10 93389631 93389631 A G PPP1R3C 3'UTR 0.69 TCGA-N5-A4RU-01 11 118107897 118107897 A G MPZL3 Missense_Mutation p.Y107H 0.45 tolerated(0.2) probably_damaging(0.968) TCGA-N5-A4RU-01 11 65729347 65729347 C T SART1 Silent p.H32H 0.25 TCGA-N5-A4RU-01 11 88924523 88924523 A G TYR Missense_Mutation p.T325A 0.28 tolerated(0.75) benign(0.026) TCGA-N5-A4RU-01 11 99932018 99932018 C T CNTN5 Missense_Mutation p.A352V 0.49 deleterious(0.03) probably_damaging(0.976) TCGA-N5-A4RU-01 12 118469095 118469095 G A RFC5 3'UTR 0.26 TCGA-N5-A4RU-01 12 32135825 32135825 G A KIAA1551 Missense_Mutation p.D646N 0.15 tolerated(0.22) benign(0.018) TCGA-N5-A4RU-01 12 57571295 57571295 C T LRP1 Missense_Mutation p.R1428W 0.40 possibly_damaging(0.901) TCGA-N5-A4RU-01 13 107165066 107165066 A C EFNB2 Missense_Mutation p.Y73D 0.13 deleterious(0.01) possibly_damaging(0.879) TCGA-N5-A4RU-01 13 47262018 47262018 A C LRCH1 Missense_Mutation p.K285T 0.19 deleterious(0) probably_damaging(1) TCGA-N5-A4RU-01 15 41192287 41192287 C G VPS18 Missense_Mutation p.T424R 0.09 tolerated(0.71) benign(0.069) TCGA-N5-A4RU-01 15 63084975 63084975 G A TLN2 Missense_Mutation p.V1958I 0.30 deleterious(0.04) benign(0.041) TCGA-N5-A4RU-01 15 77473103 77473103 C G PEAK1 Missense_Mutation p.S389T 0.24 tolerated(0.37) benign(0.05) TCGA-N5-A4RU-01 15 91447499 91447499 C G MAN2A2 Missense_Mutation p.S21W 0.35 deleterious(0) probably_damaging(0.973) TCGA-N5-A4RU-01 16 31404660 31404660 C A ITGAD 5'UTR 0.74 TCGA-N5-A4RU-01 16 3613453 3613453 G A NLRC3 Silent p.F542F 0.56 TCGA-N5-A4RU-01 16 55523609 55523609 C A MMP2 Missense_Mutation p.F351L 0.35 deleterious(0) possibly_damaging(0.649) TCGA-N5-A4RU-01 16 89762026 89762026 A C CDK10 Missense_Mutation p.T337P 0.36 deleterious(0) possibly_damaging(0.797) TCGA-N5-A4RU-01 17 42478776 42478776 T C GPATCH8 Silent p.V223V 0.26 TCGA-N5-A4RU-01 17 6482943 6482943 T A KIAA0753 3'UTR 0.21 TCGA-N5-A4RU-01 17 6482944 6482944 C T KIAA0753 3'UTR 0.21 TCGA-N5-A4RU-01 17 75471732 75471732 G A SEPT9 Intron 0.29 TCGA-N5-A4RU-01 17 7578395 7578395 G C TP53 Missense_Mutation p.H179D 0.81 deleterious(0) probably_damaging(1) TCGA-N5-A4RU-01 18 32459673 32459673 C T DTNA Missense_Mutation p.R631C 0.14 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-N5-A4RU-01 18 47796419 47796419 C A MBD1 Intron 0.07 TCGA-N5-A4RU-01 19 16870140 16870140 G A NWD1 Missense_Mutation p.R625H 0.23 deleterious(0.03) possibly_damaging(0.855) TCGA-N5-A4RU-01 19 37647149 37647149 T C CTC-454I21.3 Missense_Mutation p.S49G 0.24 tolerated(0.13) possibly_damaging(0.574) TCGA-N5-A4RU-01 19 39868449 39868449 C T SAMD4B Missense_Mutation p.R477W 0.08 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RU-01 19 40580527 40580527 T G ZNF780A Missense_Mutation p.T609P 0.08 deleterious(0) possibly_damaging(0.826) TCGA-N5-A4RU-01 19 42223865 42223865 C G CEACAM5 Silent p.P503P 0.15 TCGA-N5-A4RU-01 19 50154615 50154615 C T SCAF1 Silent p.D323D 0.55 TCGA-N5-A4RU-01 19 52715971 52715971 C T PPP2R1A Missense_Mutation p.P179L 0.86 deleterious(0.02) probably_damaging(0.928) TCGA-N5-A4RU-01 19 52719088 52719088 G T PPP2R1A Missense_Mutation p.Q288H 0.20 tolerated(0.09) benign(0.023) TCGA-N5-A4RU-01 19 55221397 55221397 G C AC098784.2 3'Flank 0.36 TCGA-N5-A4RU-01 19 5679659 5679659 G T C19orf70 Missense_Mutation p.P49T 0.30 deleterious(0.02) benign(0.394) TCGA-N5-A4RU-01 19 8386953 8386953 G C RPS28 Missense_Mutation p.L68F 0.29 deleterious(0.01) unknown(0) TCGA-N5-A4RU-01 1 157771352 157771352 C T FCRL1 Missense_Mutation p.R301K 0.18 tolerated(0.11) benign(0.11) TCGA-N5-A4RU-01 1 1580603 1580603 T C CDK11B Missense_Mutation p.E175G 0.10 probably_damaging(0.932) TCGA-N5-A4RU-01 21 19685352 19685352 C T TMPRSS15 Missense_Mutation p.R692Q 0.17 tolerated(1) benign(0) TCGA-N5-A4RU-01 21 41033136 41033136 C G B3GALT5 Missense_Mutation p.T217S 0.46 deleterious(0.04) probably_damaging(0.986) TCGA-N5-A4RU-01 22 32480588 32480588 G T SLC5A1 Missense_Mutation p.W276L 0.08 deleterious(0) probably_damaging(1) TCGA-N5-A4RU-01 22 35481698 35481698 G A ISX 3'UTR 0.28 TCGA-N5-A4RU-01 22 38245398 38245398 G A EIF3L 5'UTR 0.14 TCGA-N5-A4RU-01 2 106761661 106761661 G C UXS1 Missense_Mutation p.P153A 0.24 deleterious(0) possibly_damaging(0.668) TCGA-N5-A4RU-01 2 111921771 111921772 - A BCL2L11 Frame_Shift_Ins p.R188Tfs*77 0.26 TCGA-N5-A4RU-01 2 166615897 166615897 G C GALNT3 Missense_Mutation p.S341W 0.12 deleterious(0.02) probably_damaging(0.933) TCGA-N5-A4RU-01 2 179635252 179635252 G C TTN Missense_Mutation p.S2756C 0.14 TCGA-N5-A4RU-01 2 202483678 202483678 G T ALS2CR11 Missense_Mutation p.T59K 0.26 tolerated(1) benign(0.001) TCGA-N5-A4RU-01 2 242021733 242021733 G A SNED1 Missense_Mutation p.E1359K 0.37 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RU-01 2 55872564 55872564 G A PNPT1 Missense_Mutation p.A581V 0.27 deleterious(0) probably_damaging(0.968) TCGA-N5-A4RU-01 3 126132950 126132950 G A CCDC37 Silent p.A51A 0.33 TCGA-N5-A4RU-01 3 156181519 156181519 C T KCNAB1 Missense_Mutation p.L171F 0.20 deleterious(0) probably_damaging(0.948) TCGA-N5-A4RU-01 3 55038789 55038789 G C CACNA2D3 Splice_Site p.X897_splice 0.21 TCGA-N5-A4RU-01 4 106863781 106863781 G T NPNT Missense_Mutation p.A391S 0.13 tolerated(0.45) benign(0.002) TCGA-N5-A4RU-01 4 140272382 140272382 C T NAA15 Silent p.A283A 0.71 TCGA-N5-A4RU-01 4 187179284 187179284 C A KLKB1 Missense_Mutation p.T612N 0.39 deleterious(0.01) probably_damaging(1) TCGA-N5-A4RU-01 4 55981195 55981195 C A KDR Missense_Mutation p.K168N 0.17 tolerated(0.07) possibly_damaging(0.69) TCGA-N5-A4RU-01 4 79362391 79362391 G C FRAS1 Missense_Mutation p.D1869H 0.31 possibly_damaging(0.67) TCGA-N5-A4RU-01 5 150405020 150405020 G A GPX3 Silent p.V69V 0.12 TCGA-N5-A4RU-01 5 178413522 178413522 C T GRM6 Missense_Mutation p.R578H 0.74 tolerated(0.42) benign(0.004) TCGA-N5-A4RU-01 5 31424571 31424571 C T DROSHA Missense_Mutation p.R1075H 0.28 tolerated(0.65) benign(0.003) TCGA-N5-A4RU-01 5 73932112 73932112 A G ENC1 Missense_Mutation p.C67R 0.67 deleterious(0.01) probably_damaging(0.998) TCGA-N5-A4RU-01 6 132910256 132910256 G T TAAR5 Silent p.G190G 0.08 TCGA-N5-A4RU-01 6 157528639 157528639 C T ARID1B Missense_Mutation p.R2122C 0.18 probably_damaging(0.997) TCGA-N5-A4RU-01 6 7585361 7585361 C T DSP Silent p.I2622I 0.20 TCGA-N5-A4RU-01 6 79918282 79918282 C G HMGN3 Silent p.R26R 0.21 TCGA-N5-A4RU-01 6 83839206 83839206 C A DOPEY1 Missense_Mutation p.R774S 0.26 tolerated(0.9) benign(0.001) TCGA-N5-A4RU-01 6 88854544 88854544 C G CNR1 Missense_Mutation p.R150S 0.10 deleterious(0) probably_damaging(0.965) TCGA-N5-A4RU-01 7 155301672 155301672 C A CNPY1 Missense_Mutation p.A21S 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-N5-A4RU-01 7 44924851 44924851 C G PURB Missense_Mutation p.E33Q 0.12 deleterious(0) possibly_damaging(0.843) TCGA-N5-A4RU-01 9 35736739 35736739 G T CREB3 3'UTR 0.08 TCGA-N5-A4RU-01 X 12809549 12809549 G A PRPS2 5'UTR 0.90 TCGA-N5-A4RU-01 X 132888171 132888171 T C GPC3 Missense_Mutation p.N124D 0.37 deleterious(0.04) possibly_damaging(0.688) TCGA-N5-A4RU-01 X 153692521 153692521 G A PLXNA3 Missense_Mutation p.V565M 0.59 deleterious(0) possibly_damaging(0.804) TCGA-N5-A4RU-01 X 154185347 154185347 C T F8 Missense_Mutation p.R546Q 0.44 tolerated(0.05) benign(0.354) TCGA-N5-A4RU-01 X 154305493 154305493 C T BRCC3 Missense_Mutation p.R82C 0.56 deleterious(0.02) benign(0.344) TCGA-N5-A4RU-01 X 48458098 48458098 T A WDR13 Missense_Mutation p.D172E 0.35 tolerated(0.14) benign(0.07) TCGA-N5-A4RU-01 X 55033376 55033379 GACG - APEX2 Frame_Shift_Del p.T356Cfs*37 0.22 TCGA-N5-A4RV-01 10 102108089 102108089 A T SCD Missense_Mutation p.Y99F 0.58 tolerated(0.34) possibly_damaging(0.819) TCGA-N5-A4RV-01 10 29769363 29769363 G C SVIL Intron 0.50 TCGA-N5-A4RV-01 11 103182702 103182702 T C DYNC2H1 Silent p.A3870A 0.92 TCGA-N5-A4RV-01 11 119057301 119057301 G A PDZD3 Missense_Mutation p.V78M 0.98 deleterious(0) probably_damaging(0.997) TCGA-N5-A4RV-01 11 64111265 64111265 C T CCDC88B Missense_Mutation p.A445V 0.35 tolerated(0.36) benign(0.006) TCGA-N5-A4RV-01 11 65784607 65784607 G T CATSPER1 Missense_Mutation p.A747E 0.45 tolerated(0.07) possibly_damaging(0.685) TCGA-N5-A4RV-01 12 109696795 109696795 A G ACACB Silent p.G2126G 0.18 TCGA-N5-A4RV-01 12 49415614 49415614 G C KMT2D Missense_Mutation p.H5521Q 0.21 unknown(0) TCGA-N5-A4RV-01 12 6700933 6700933 C T CHD4 Missense_Mutation p.G1050E 0.96 deleterious(0) probably_damaging(0.972) TCGA-N5-A4RV-01 13 49033926 49033926 T G RB1 Missense_Mutation p.L688R 0.97 deleterious(0) probably_damaging(1) TCGA-N5-A4RV-01 15 42693949 42693949 C G CAPN3 Missense_Mutation p.R489G 0.20 deleterious(0) probably_damaging(1) TCGA-N5-A4RV-01 15 70959158 70959158 G C UACA Missense_Mutation p.Q1289E 0.12 tolerated(0.11) benign(0.103) TCGA-N5-A4RV-01 16 67214278 67214278 C T KIAA0895L Missense_Mutation p.R79H 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-N5-A4RV-01 16 76555943 76555943 A T CNTNAP4 Silent p.T775T 0.31 TCGA-N5-A4RV-01 16 84792334 84792334 A G USP10 Missense_Mutation p.N402S 0.30 tolerated(0.14) benign(0.005) TCGA-N5-A4RV-01 17 26715423 26715423 G C SARM1 Missense_Mutation p.E562D 0.41 tolerated(0.25) probably_damaging(0.948) TCGA-N5-A4RV-01 17 42398463 42398463 G A SLC25A39 Silent p.G218G 0.21 TCGA-N5-A4RV-01 17 42636744 42636744 C T FZD2 Missense_Mutation p.T563I 0.61 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-N5-A4RV-01 17 56386693 56386693 C T BZRAP1 Missense_Mutation p.E1314K 0.47 deleterious(0) possibly_damaging(0.67) TCGA-N5-A4RV-01 17 7578502 7578502 A C TP53 Missense_Mutation p.V143G 0.97 deleterious(0) probably_damaging(1) TCGA-N5-A4RV-01 17 76490708 76490708 G A DNAH17 Silent p.D2065D 0.19 TCGA-N5-A4RV-01 19 22363519 22363519 C G ZNF676 Missense_Mutation p.E334Q 0.48 deleterious(0.01) possibly_damaging(0.737) TCGA-N5-A4RV-01 19 35941555 35941555 C T FFAR2 Silent p.D313D 0.21 TCGA-N5-A4RV-01 1 150921998 150921998 A G SETDB1 Missense_Mutation p.Y526C 0.23 tolerated(0.13) benign(0.161) TCGA-N5-A4RV-01 1 209956665 209956665 C G C1orf74 Missense_Mutation p.E105D 0.25 deleterious(0.02) benign(0.443) TCGA-N5-A4RV-01 1 211652494 211652494 G A RD3 Missense_Mutation p.R158C 0.21 deleterious(0) probably_damaging(0.993) TCGA-N5-A4RV-01 1 78044547 78044547 C A ZZZ3 Missense_Mutation p.S697I 0.33 deleterious(0) possibly_damaging(0.876) TCGA-N5-A4RV-01 1 99764627 99764627 T A LPPR4 Missense_Mutation p.I192N 0.41 deleterious(0) probably_damaging(0.984) TCGA-N5-A4RV-01 20 40113160 40113161 TC - CHD6 Frame_Shift_Del p.E696Dfs*4 0.37 TCGA-N5-A4RV-01 20 61951483 61951483 C T COL20A1 Silent p.P1003P 0.69 TCGA-N5-A4RV-01 21 42775253 42775253 C G MX2 Missense_Mutation p.L545V 0.54 deleterious(0) possibly_damaging(0.894) TCGA-N5-A4RV-01 22 18185097 18185097 G C BCL2L13 Missense_Mutation p.G182A 0.42 deleterious(0.04) probably_damaging(1) TCGA-N5-A4RV-01 22 50297568 50297568 A C ALG12 Missense_Mutation p.L462R 0.18 possibly_damaging(0.617) TCGA-N5-A4RV-01 2 141108430 141108430 G A LRP1B Missense_Mutation p.P3943L 0.65 possibly_damaging(0.713) TCGA-N5-A4RV-01 2 153415331 153415331 C - FMNL2 Frame_Shift_Del p.A146Gfs*2 0.29 TCGA-N5-A4RV-01 2 162865080 162865089 TCCCACCGGG - DPP4 Frame_Shift_Del p.S657Cfs*30 0.46 TCGA-N5-A4RV-01 2 241713633 241713633 T A KIF1A Missense_Mutation p.D335V 0.76 deleterious(0) probably_damaging(0.998) TCGA-N5-A4RV-01 2 70165331 70165331 G C MXD1 Missense_Mutation p.S194T 0.29 deleterious(0.05) probably_damaging(0.993) TCGA-N5-A4RV-01 3 133664065 133664065 G T SLCO2A1 Silent p.R445R 0.16 TCGA-N5-A4RV-01 3 164704992 164704992 T G SI Missense_Mutation p.I1711L 0.29 tolerated(0.21) benign(0.318) TCGA-N5-A4RV-01 3 164908297 164908297 G T SLITRK3 Missense_Mutation p.L108I 0.70 deleterious(0) probably_damaging(0.996) TCGA-N5-A4RV-01 3 196736583 196736583 G A MFI2 Silent p.H477H 0.64 TCGA-N5-A4RV-01 3 40231702 40231702 A G MYRIP Silent p.R471R 0.34 TCGA-N5-A4RV-01 3 52431061 52431061 G A DNAH1 Splice_Site p.X3929_splice 0.41 TCGA-N5-A4RV-01 4 159140504 159140504 G A TMEM144 Silent p.P125P 0.28 TCGA-N5-A4RV-01 4 57843764 57843764 C A NOA1 5'UTR 0.29 TCGA-N5-A4RV-01 5 150512081 150512081 C G ANXA6 Missense_Mutation p.R231P 0.31 deleterious(0.03) benign(0.031) TCGA-N5-A4RV-01 5 41904475 41904475 G C C5orf51 Silent p.A2A 0.37 TCGA-N5-A4RV-01 5 55265552 55265552 C T IL6ST Missense_Mutation p.V66I 0.27 tolerated(1) benign(0) TCGA-N5-A4RV-01 5 76115089 76115089 G T F2RL1 Nonsense_Mutation p.G28* 0.36 TCGA-N5-A4RV-01 6 106552814 106552814 C A PRDM1 Missense_Mutation p.P260H 0.47 tolerated(0.21) benign(0.001) TCGA-N5-A4RV-01 6 132792624 132792624 A C STX7 Missense_Mutation p.V122G 0.41 deleterious(0) possibly_damaging(0.905) TCGA-N5-A4RV-01 6 160517488 160517488 G C IGF2R Missense_Mutation p.V2225L 0.09 tolerated(0.23) possibly_damaging(0.837) TCGA-N5-A4RV-01 6 31848029 31848029 G A EHMT2 Silent p.G1155G 0.10 TCGA-N5-A4RV-01 6 41162265 41162265 A C TREML2 Missense_Mutation p.I228S 0.54 tolerated(0.13) benign(0.021) TCGA-N5-A4RV-01 7 123302950 123302950 G T LMOD2 Missense_Mutation p.R437M 0.78 tolerated(0.09) benign(0.002) TCGA-N5-A4RV-01 7 143792722 143792722 C T OR2A12 Silent p.N174N 0.31 TCGA-N5-A4RV-01 7 150715385 150715385 C T ATG9B Missense_Mutation p.R623Q 0.28 deleterious(0.01) possibly_damaging(0.667) TCGA-N5-A4RV-01 8 113358408 113358408 A C CSMD3 Silent p.G2120G 0.59 TCGA-N5-A4RV-01 8 113585824 113585824 G A CSMD3 Silent p.R1316R 0.16 TCGA-N5-A4RV-01 8 124250155 124250155 G T C8orf76 Silent p.I80I 0.43 TCGA-N5-A4RV-01 8 72756427 72756427 T A MSC 5'UTR 0.60 TCGA-N5-A4RV-01 9 139400313 139400313 A T NOTCH1 Nonsense_Mutation p.C1345* 0.85 TCGA-N5-A4RV-01 9 93375839 93375839 G A DIRAS2 Nonsense_Mutation p.R91* 0.96 TCGA-N5-A4RV-01 X 106796138 106796138 C A FRMPD3 Missense_Mutation p.D241E 0.42 tolerated(0.8) benign(0.406) TCGA-N5-A4RV-01 X 122387246 122387246 C A GRIA3 Missense_Mutation p.H121N 0.24 deleterious(0.03) probably_damaging(1) TCGA-N5-A4RV-01 X 132161820 132161820 A T USP26 Silent p.S143S 0.30 TCGA-N5-A4RV-01 X 55515333 55515333 C T USP51 Missense_Mutation p.G14R 0.30 tolerated_low_confidence(0.17) unknown(0) TCGA-N5-A59E-01 10 134628401 134628401 C G TTC40 Missense_Mutation p.E2379Q 0.05 tolerated(0.13) possibly_damaging(0.776) TCGA-N5-A59E-01 10 75457378 75457378 C T AGAP5 Missense_Mutation p.A46T 0.19 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-N5-A59E-01 11 10625994 10625996 CTC - MRVI1 In_Frame_Del p.E567del 0.80 TCGA-N5-A59E-01 11 1651251 1651251 G A KRTAP5-5 Missense_Mutation p.G61S 0.73 tolerated_low_confidence(0.31) unknown(0) TCGA-N5-A59E-01 11 45203391 45203391 C G PRDM11 Missense_Mutation p.T25R 0.82 tolerated_low_confidence(0.16) possibly_damaging(0.552) TCGA-N5-A59E-01 11 50003362 50003362 T G OR4C12 Missense_Mutation p.N226H 0.12 tolerated_low_confidence(1) benign(0.002) TCGA-N5-A59E-01 11 62520200 62520200 C G ZBTB3 Missense_Mutation p.D363H 0.42 deleterious(0) probably_damaging(0.997) TCGA-N5-A59E-01 12 121947777 121947777 C T KDM2B Missense_Mutation p.A414T 0.88 tolerated(0.34) benign(0.003) TCGA-N5-A59E-01 12 13061636 13061636 A G GPRC5A Silent p.E151E 0.61 TCGA-N5-A59E-01 12 30834617 30834617 A T IPO8 Missense_Mutation p.L153Q 0.13 deleterious(0) probably_damaging(0.954) TCGA-N5-A59E-01 12 40012651 40012651 G T ABCD2 Missense_Mutation p.P256H 0.51 deleterious(0) probably_damaging(0.999) TCGA-N5-A59E-01 12 56490829 56490829 C T ERBB3 Missense_Mutation p.H759Y 0.47 deleterious(0.04) possibly_damaging(0.849) TCGA-N5-A59E-01 12 5708651 5708651 C G ANO2 Missense_Mutation p.M744I 0.08 deleterious(0.01) benign(0.034) TCGA-N5-A59E-01 12 81239693 81239693 C A LIN7A Missense_Mutation p.S100I 1.00 deleterious(0.02) possibly_damaging(0.766) TCGA-N5-A59E-01 12 8211663 8211663 G - C3AR1 Frame_Shift_Del p.S373Rfs*41 0.38 TCGA-N5-A59E-01 13 101266664 101266664 G A TMTC4 Silent p.H619H 0.09 TCGA-N5-A59E-01 13 113748841 113748841 G T MCF2L Silent p.T989T 0.11 TCGA-N5-A59E-01 14 67671330 67671330 G C FAM71D Missense_Mutation p.G146R 0.19 deleterious(0.03) probably_damaging(0.967) TCGA-N5-A59E-01 15 75042815 75042815 C T CYP1A2 Missense_Mutation p.P246S 0.22 deleterious(0) probably_damaging(0.999) TCGA-N5-A59E-01 16 31434762 31434762 C A ITGAD Silent p.V983V 0.70 TCGA-N5-A59E-01 16 56792513 56792513 G T NUP93 Silent p.L81L 0.20 TCGA-N5-A59E-01 17 7578190 7578190 T G TP53 Missense_Mutation p.Y220S 0.88 deleterious(0) probably_damaging(1) TCGA-N5-A59E-01 17 79180597 79180597 C T AZI1 Silent p.P154P 0.11 TCGA-N5-A59E-01 17 80445875 80445875 G A NARF Missense_Mutation p.A405T 0.16 tolerated(0.45) benign(0.027) TCGA-N5-A59E-01 18 39573236 39573236 C G PIK3C3 Missense_Mutation p.D239E 0.16 tolerated(0.28) benign(0.423) TCGA-N5-A59E-01 19 36233468 36233468 G A U2AF1L4 3'UTR 0.57 TCGA-N5-A59E-01 19 50964799 50964799 G A MYBPC2 Missense_Mutation p.E978K 0.17 deleterious(0) possibly_damaging(0.657) TCGA-N5-A59E-01 19 51381707 51381707 C G KLK2 Missense_Mutation p.I226M 0.34 deleterious(0) probably_damaging(0.982) TCGA-N5-A59E-01 19 52272749 52272749 A T FPR2 Missense_Mutation p.I280F 0.22 tolerated(0.1) benign(0.008) TCGA-N5-A59E-01 19 52715971 52715971 C G PPP2R1A Missense_Mutation p.P179R 0.23 deleterious(0) probably_damaging(0.997) TCGA-N5-A59E-01 1 115006917 115006917 C G TRIM33 Missense_Mutation p.S207T 0.31 deleterious(0) benign(0.115) TCGA-N5-A59E-01 1 152277984 152277984 G A FLG Silent p.H3126H 0.05 TCGA-N5-A59E-01 1 153925843 153925843 G A CRTC2 Missense_Mutation p.T169I 0.08 deleterious(0) probably_damaging(0.998) TCGA-N5-A59E-01 1 160466086 160466088 CTT - SLAMF6 In_Frame_Del p.K49del 0.38 TCGA-N5-A59E-01 1 196397292 196397292 C T KCNT2 Silent p.L309L 0.10 TCGA-N5-A59E-01 1 19712043 19712043 C T CAPZB Silent p.K57K 0.44 TCGA-N5-A59E-01 1 206318413 206318414 - GA CTSE Frame_Shift_Ins p.C60Pfs*100 0.26 TCGA-N5-A59E-01 1 223396671 223396671 G - SUSD4 Frame_Shift_Del p.P455Lfs*8 0.10 TCGA-N5-A59E-01 1 2492102 2492102 C T TNFRSF14 Missense_Mutation p.P167L 0.57 tolerated(0.56) benign(0.083) TCGA-N5-A59E-01 1 2537800 2537800 C G MMEL1 Missense_Mutation p.E213Q 0.33 tolerated(0.29) benign(0.016) TCGA-N5-A59E-01 1 33999485 33999485 C T CSMD2 Missense_Mutation p.R3157H 0.62 tolerated(0.16) benign(0.021) TCGA-N5-A59E-01 1 44075093 44075093 G C PTPRF Silent p.S1299S 0.11 TCGA-N5-A59E-01 20 23016960 23016960 G C SSTR4 Silent p.L280L 0.13 TCGA-N5-A59E-01 20 35545400 35545400 G C SAMHD1 Missense_Mutation p.S302C 0.42 deleterious(0) benign(0.188) TCGA-N5-A59E-01 20 44592260 44592260 A - ZNF335 Frame_Shift_Del p.L462* 0.09 TCGA-N5-A59E-01 22 31658195 31658195 G A LIMK2 Silent p.G188G 0.22 TCGA-N5-A59E-01 22 32843231 32843231 G C BPIFC Missense_Mutation p.I114M 0.08 deleterious(0) possibly_damaging(0.879) TCGA-N5-A59E-01 22 39414400 39414400 C T APOBEC3C 3'UTR 0.11 TCGA-N5-A59E-01 22 50216636 50216636 G A BRD1 Silent p.L444L 0.31 TCGA-N5-A59E-01 22 50216637 50216637 G T BRD1 Silent p.V443V 0.31 TCGA-N5-A59E-01 2 109398713 109398713 A G RANBP2 Missense_Mutation p.T2964A 0.43 tolerated(0.54) possibly_damaging(0.906) TCGA-N5-A59E-01 2 120980196 120980196 G C TMEM185B Silent p.L119L 0.54 TCGA-N5-A59E-01 2 131099731 131099731 C T CCDC115 5'UTR 0.33 TCGA-N5-A59E-01 2 160031574 160031598 CAGAGACCTTCTGATAAAGGAGCCC - TANC1 Frame_Shift_Del p.R539Nfs*6 0.30 TCGA-N5-A59E-01 2 234847659 234847659 C A TRPM8 Nonsense_Mutation p.C122* 0.65 TCGA-N5-A59E-01 2 40656143 40656143 G A SLC8A1 Silent p.A426A 0.09 TCGA-N5-A59E-01 3 194181555 194181555 A G ATP13A3 Silent p.I19I 0.11 TCGA-N5-A59E-01 3 53321609 53321609 G T DCP1A Missense_Mutation p.H582N 0.35 deleterious(0.02) benign(0.247) TCGA-N5-A59E-01 3 56647723 56647723 G T CCDC66 Missense_Mutation p.R504L 0.47 deleterious(0) probably_damaging(0.917) TCGA-N5-A59E-01 3 7456839 7456839 G A GRM7 Missense_Mutation p.R388H 0.47 deleterious(0.04) possibly_damaging(0.782) TCGA-N5-A59E-01 3 98251260 98251260 G A GPR15 Missense_Mutation p.S128N 0.33 deleterious(0) probably_damaging(1) TCGA-N5-A59E-01 4 114899926 114899926 C A ARSJ Missense_Mutation p.G22V 0.90 deleterious_low_confidence(0) benign(0.278) TCGA-N5-A59E-01 4 166254533 166254533 A G MSMO1 Missense_Mutation p.N4S 0.16 tolerated(0.23) benign(0.043) TCGA-N5-A59E-01 4 75065519 75065519 G C MTHFD2L Missense_Mutation p.D154H 0.32 deleterious(0.01) probably_damaging(0.909) TCGA-N5-A59E-01 5 180687887 180687887 T A TRIM52 5'UTR 0.30 TCGA-N5-A59E-01 6 137243603 137243603 T G SLC35D3 Missense_Mutation p.S13A 0.21 tolerated(0.68) benign(0.001) TCGA-N5-A59E-01 6 26033563 26033563 G A HIST1H2AB Silent p.R78R 0.24 TCGA-N5-A59E-01 6 51889956 51889956 G T PKHD1 Nonsense_Mutation p.S1551* 0.16 TCGA-N5-A59E-01 8 118147537 118147537 C A SLC30A8 5'Flank 0.20 TCGA-N5-A59E-01 8 22106726 22106726 C G POLR3D Silent p.L275L 0.16 TCGA-N5-A59E-01 8 52320720 52320720 T A PXDNL Missense_Mutation p.D1155V 0.21 tolerated(0.13) probably_damaging(0.991) TCGA-N5-A59E-01 8 9588536 9588536 A C TNKS Missense_Mutation p.K713T 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-N5-A59E-01 9 139565135 139565135 G C EGFL7 Intron 0.28 TCGA-N5-A59E-01 9 85924485 85924485 A - FRMD3 Frame_Shift_Del p.W298Gfs*72 0.47 TCGA-N5-A59E-01 X 135475715 135475715 G A GPR112 Missense_Mutation p.A2686T 0.27 deleterious(0.01) possibly_damaging(0.788) TCGA-N5-A59E-01 X 49022525 49022525 G C MAGIX Missense_Mutation p.K264N 0.13 deleterious(0.05) benign(0.039) TCGA-N5-A59E-01 X 57619818 57619818 G A ZXDB Missense_Mutation p.R446Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-N5-A59E-01 X 73811853 73811853 A C RLIM Missense_Mutation p.S433A 0.67 tolerated(0.15) unknown(0) TCGA-N5-A59F-01 10 134040384 134040384 G T STK32C Missense_Mutation p.Q187K 0.51 tolerated(0.29) benign(0.017) TCGA-N5-A59F-01 10 8097749 8097749 C T GATA3 Missense_Mutation p.P44L 0.35 deleterious(0.01) benign(0.2) TCGA-N5-A59F-01 11 60161317 60161317 T A MS4A7 Missense_Mutation p.S236T 0.09 tolerated(0.1) possibly_damaging(0.629) TCGA-N5-A59F-01 11 60637224 60637224 C T ZP1 Missense_Mutation p.A178V 0.88 tolerated(0.18) benign(0.003) TCGA-N5-A59F-01 11 7083561 7083561 C A NLRP14 Intron 0.77 TCGA-N5-A59F-01 11 71847090 71847090 C T FOLR3 Missense_Mutation p.T31M 0.15 tolerated(0.07) possibly_damaging(0.791) TCGA-N5-A59F-01 12 120637130 120637130 G A RPLP0 Silent p.N71N 0.32 TCGA-N5-A59F-01 12 54963370 54963370 T G PDE1B Missense_Mutation p.S151A 0.26 deleterious(0) benign(0.039) TCGA-N5-A59F-01 12 56477655 56477655 C T ERBB3 Missense_Mutation p.T68M 0.37 tolerated(0.54) benign(0.022) TCGA-N5-A59F-01 13 32913905 32913905 A G BRCA2 Missense_Mutation p.N1805D 0.14 tolerated(0.18) benign(0.059) TCGA-N5-A59F-01 13 45148061 45148061 G T TSC22D1 Missense_Mutation p.P717Q 0.07 tolerated(0.42) benign(0.002) TCGA-N5-A59F-01 15 24921045 24921045 G A NPAP1 Missense_Mutation p.G11R 0.47 tolerated_low_confidence(0.6) probably_damaging(0.98) TCGA-N5-A59F-01 15 28474383 28474383 G A HERC2 Nonsense_Mutation p.R1744* 0.07 TCGA-N5-A59F-01 15 41772461 41772461 C T RTF1 Missense_Mutation p.S655L 0.42 deleterious(0.02) possibly_damaging(0.474) TCGA-N5-A59F-01 15 68643609 68643609 C G ITGA11 Missense_Mutation p.R294T 0.19 deleterious(0.02) probably_damaging(0.981) TCGA-N5-A59F-01 17 73258657 73258657 G C MRPS7 Missense_Mutation p.V55L 0.05 tolerated(1) benign(0.001) TCGA-N5-A59F-01 17 7578478 7578478 G C TP53 Missense_Mutation p.P151R 0.75 deleterious(0) probably_damaging(0.997) TCGA-N5-A59F-01 18 31325498 31325498 C A ASXL3 Missense_Mutation p.Q1896K 0.06 benign(0.159) TCGA-N5-A59F-01 19 15756607 15756607 G T CYP4F3 Missense_Mutation p.G93W 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-N5-A59F-01 19 31768484 31768484 G T TSHZ3 Missense_Mutation p.P739T 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-N5-A59F-01 19 41386411 41386411 G T CYP2A7 Missense_Mutation p.L156I 0.09 deleterious(0.01) possibly_damaging(0.689) TCGA-N5-A59F-01 19 47572491 47572491 C A ZC3H4 Silent p.P752P 0.09 TCGA-N5-A59F-01 19 50837596 50837596 A G KCNC3 5'Flank 0.48 TCGA-N5-A59F-01 19 58991357 58991357 G A ZNF446 Missense_Mutation p.G258E 0.61 deleterious(0.05) possibly_damaging(0.654) TCGA-N5-A59F-01 1 104122106 104122106 C A AMY2B Missense_Mutation p.A507D 0.08 deleterious(0.01) benign(0.185) TCGA-N5-A59F-01 1 156815523 156815523 A G INSRR Missense_Mutation p.C688R 0.20 deleterious(0) benign(0.426) TCGA-N5-A59F-01 1 157739929 157739929 G A FCRL2 Missense_Mutation p.R108C 0.56 tolerated(0.19) probably_damaging(0.915) TCGA-N5-A59F-01 1 197060125 197060125 T A ASPM Missense_Mutation p.Y3164F 0.11 tolerated(0.4) benign(0.022) TCGA-N5-A59F-01 1 245027733 245027733 G A HNRNPU 5'UTR 0.43 TCGA-N5-A59F-01 1 248202541 248202541 G T OR2L2 3'UTR 0.09 TCGA-N5-A59F-01 1 248813672 248813672 G C OR2T27 Missense_Mutation p.R172G 0.10 deleterious(0.01) possibly_damaging(0.767) TCGA-N5-A59F-01 1 34180304 34180304 C T CSMD2 Missense_Mutation p.V1057M 0.66 deleterious(0) probably_damaging(0.992) TCGA-N5-A59F-01 1 985881 985881 C G AGRN Missense_Mutation p.T1684R 0.08 deleterious(0) probably_damaging(0.995) TCGA-N5-A59F-01 20 37634873 37634873 C A DHX35 Silent p.R366R 0.15 TCGA-N5-A59F-01 2 152311546 152311546 T C RIF1 Missense_Mutation p.F828L 0.38 tolerated(1) benign(0) TCGA-N5-A59F-01 2 179569235 179569235 A G TTN Splice_Site p.X9988_splice 0.42 TCGA-N5-A59F-01 2 242371190 242371193 GTAA - FARP2 Splice_Site p.X289_splice 0.17 TCGA-N5-A59F-01 2 9519169 9519169 G C ASAP2 Silent p.G643G 0.20 TCGA-N5-A59F-01 3 10142903 10142903 A G FANCD2 3'Flank 0.10 TCGA-N5-A59F-01 3 42827564 42827564 A G HIGD1A Missense_Mutation p.M77T 0.41 tolerated(0.35) benign(0.331) TCGA-N5-A59F-01 4 153244092 153244092 G A FBXW7 Missense_Mutation p.R689W 0.38 deleterious(0) probably_damaging(0.999) TCGA-N5-A59F-01 4 153245518 153245518 G A FBXW7 Missense_Mutation p.S558F 0.39 deleterious(0.01) probably_damaging(0.931) TCGA-N5-A59F-01 4 517577 517577 C A PIGG Silent p.G648G 0.39 TCGA-N5-A59F-01 5 140572948 140572948 G A PCDHB10 Missense_Mutation p.A275T 0.45 deleterious_low_confidence(0) benign(0.185) TCGA-N5-A59F-01 5 153149777 153149777 C A GRIA1 Missense_Mutation p.A701E 0.24 deleterious(0.03) probably_damaging(1) TCGA-N5-A59F-01 5 167689260 167689260 C G TENM2 Missense_Mutation p.S2590R 0.38 deleterious(0) benign(0.233) TCGA-N5-A59F-01 5 180048621 180048621 G A FLT4 Silent p.H647H 0.44 TCGA-N5-A59F-01 5 38406264 38406264 G A EGFLAM Missense_Mutation p.R250H 0.38 tolerated_low_confidence(0.48) benign(0.001) TCGA-N5-A59F-01 5 5262848 5262848 G A ADAMTS16 Missense_Mutation p.R914Q 0.44 deleterious(0.05) benign(0.109) TCGA-N5-A59F-01 6 43023723 43023723 C T MRPL2 Silent p.A181A 0.20 TCGA-N5-A59F-01 7 15601455 15601455 C T AGMO Missense_Mutation p.A6T 0.10 tolerated(0.29) benign(0.007) TCGA-N5-A59F-01 7 70853251 70853251 G A WBSCR17 Silent p.L151L 0.08 TCGA-N5-A59F-01 7 77797376 77797376 C T MAGI2 Missense_Mutation p.R818H 0.24 deleterious(0) probably_damaging(0.976) TCGA-N5-A59F-01 7 86415593 86415593 G A GRM3 Missense_Mutation p.R162Q 0.81 deleterious(0) probably_damaging(1) TCGA-N5-A59F-01 7 97922672 97922692 CAACTACGTGAAACAGAGAAG - BAIAP2L1 3'UTR 0.67 TCGA-N5-A59F-01 8 12285188 12285188 G A FAM86B2 Silent p.C290C 0.14 TCGA-N5-A59F-01 8 22428688 22428688 G A SORBS3 Missense_Mutation p.R566H 0.39 tolerated(0.18) benign(0.022) TCGA-N5-A59F-01 9 135985085 135985085 G A RALGDS Missense_Mutation p.T171M 0.07 tolerated(0.1) possibly_damaging(0.907) TCGA-N5-A59F-01 9 22006054 22006054 C T CDKN2B Missense_Mutation p.V117M 0.40 deleterious(0) probably_damaging(0.98) TCGA-N5-A59F-01 9 35664430 35664430 C T ARHGEF39 Missense_Mutation p.R98H 0.42 tolerated(0.16) benign(0.001) TCGA-N5-A59F-01 X 152853666 152853666 C T FAM58A 3'UTR 0.69 TCGA-N5-A59F-01 X 90690676 90690676 C T PABPC5 Missense_Mutation p.L34F 0.52 deleterious(0) probably_damaging(1) TCGA-N6-A4V9-01 10 30901770 30901770 T C LYZL2 Missense_Mutation p.T166A 0.12 tolerated(0.08) probably_damaging(0.995) TCGA-N6-A4V9-01 10 98761065 98761065 A G SLIT1 Missense_Mutation p.V1470A 0.70 tolerated(0.72) probably_damaging(0.99) TCGA-N6-A4V9-01 11 118038953 118038953 C T SCN2B Missense_Mutation p.V99M 0.88 deleterious(0) probably_damaging(0.991) TCGA-N6-A4V9-01 11 16340073 16340073 G A SOX6 Missense_Mutation p.R122C 0.94 deleterious(0) probably_damaging(0.999) TCGA-N6-A4V9-01 11 314121 314121 A T IFITM1 5'UTR 0.44 TCGA-N6-A4V9-01 11 66191699 66191699 C G NPAS4 Silent p.T446T 0.09 TCGA-N6-A4V9-01 11 66204693 66204693 C T MRPL11 Missense_Mutation p.E119K 1.00 deleterious(0) probably_damaging(0.982) TCGA-N6-A4V9-01 12 110246256 110246256 G A TRPV4 Missense_Mutation p.P135L 0.61 tolerated(0.11) benign(0.006) TCGA-N6-A4V9-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.64 deleterious(0) benign(0.361) TCGA-N6-A4V9-01 12 64173847 64173847 C G TMEM5 Missense_Mutation p.P36R 0.37 tolerated(0.67) benign(0.091) TCGA-N6-A4V9-01 12 71918248 71918250 TTA AT LGR5 Frame_Shift_Del p.L116Hfs*11 0.14 TCGA-N6-A4V9-01 16 85143873 85143873 C G FAM92B Missense_Mutation p.A72P 0.55 deleterious(0) probably_damaging(0.999) TCGA-N6-A4V9-01 17 40489876 40489876 C - STAT3 Splice_Site p.X184_splice 0.53 TCGA-N6-A4V9-01 17 4058097 4058097 C T CYB5D2 Missense_Mutation p.P174L 0.95 deleterious(0.02) benign(0.286) TCGA-N6-A4V9-01 17 40839788 40839788 C T CNTNAP1 Silent p.F365F 0.93 TCGA-N6-A4V9-01 17 49237345 49237345 C T NME1 Missense_Mutation p.S69F 0.27 deleterious(0) probably_damaging(0.914) TCGA-N6-A4V9-01 17 57721745 57721745 G A CLTC Missense_Mutation p.V51I 0.16 tolerated(0.14) benign(0.181) TCGA-N6-A4V9-01 17 72473654 72473654 C T CD300A Nonsense_Mutation p.Q205* 0.28 TCGA-N6-A4V9-01 17 7578443 7578443 A G TP53 Missense_Mutation p.Y163H 0.96 deleterious(0) probably_damaging(0.999) TCGA-N6-A4V9-01 17 80040213 80040213 G T FASN Silent p.T1999T 0.22 TCGA-N6-A4V9-01 19 34936017 34936017 T C UBA2 Silent p.L254L 0.51 TCGA-N6-A4V9-01 19 36259088 36259088 C G C19orf55 Missense_Mutation p.R418G 0.10 unknown(0) TCGA-N6-A4V9-01 1 109171385 109171385 T A FAM102B Missense_Mutation p.I310K 0.34 deleterious(0) probably_damaging(0.994) TCGA-N6-A4V9-01 1 36023792 36023792 A G NCDN Translation_Start_Site p.M1? 0.94 deleterious_low_confidence(0) benign(0.019) TCGA-N6-A4V9-01 2 165969452 165969452 A T SCN3A Nonsense_Mutation p.Y1262* 0.50 TCGA-N6-A4V9-01 3 112564673 112564673 C G CD200R1L 5'UTR 0.22 TCGA-N6-A4V9-01 3 138290180 138290180 C A CEP70 Nonsense_Mutation p.E30* 0.10 TCGA-N6-A4V9-01 3 17051510 17051510 G T PLCL2 Missense_Mutation p.E98D 0.15 tolerated(1) benign(0.006) TCGA-N6-A4V9-01 3 45583357 45583357 A T LARS2 Missense_Mutation p.Y814F 0.07 tolerated(0.16) possibly_damaging(0.497) TCGA-N6-A4V9-01 4 75312484 75312484 G C AREG Missense_Mutation p.D99H 0.22 deleterious(0) probably_damaging(0.999) TCGA-N6-A4V9-01 5 132150842 132150842 C A SOWAHA Missense_Mutation p.P510H 0.18 deleterious(0) probably_damaging(0.999) TCGA-N6-A4V9-01 5 161128593 161128593 G T GABRA6 Silent p.T392T 0.10 TCGA-N6-A4V9-01 5 39377323 39377323 A G DAB2 Silent p.N522N 0.46 TCGA-N6-A4V9-01 5 41382479 41382479 C A PLCXD3 Missense_Mutation p.Q87H 0.21 deleterious(0) probably_damaging(0.999) TCGA-N6-A4V9-01 5 80390692 80390693 GT - RASGRF2 Frame_Shift_Del p.F547Wfs*6 0.32 TCGA-N6-A4V9-01 6 146127324 146127324 C T FBXO30 Missense_Mutation p.R73Q 0.50 deleterious(0) probably_damaging(1) TCGA-N6-A4V9-01 6 158923393 158923393 G T TULP4 Missense_Mutation p.V900L 0.10 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-N6-A4V9-01 6 31606852 31606852 G A BAG6 3'UTR 0.33 TCGA-N6-A4V9-01 7 48411971 48411971 A G ABCA13 Silent p.A3670A 0.47 TCGA-N6-A4V9-01 7 86468807 86468807 G A GRM3 Silent p.L659L 0.52 TCGA-N6-A4V9-01 8 1626408 1626408 G A DLGAP2 Missense_Mutation p.V693I 0.23 deleterious(0) probably_damaging(0.999) TCGA-N6-A4V9-01 8 22550540 22550540 C T EGR3 5'UTR 0.27 TCGA-N6-A4V9-01 8 37993284 37993284 G A ASH2L Silent p.T573T 0.30 TCGA-N6-A4V9-01 8 41530024 41530024 C A ANK1 Missense_Mutation p.E1689D 0.03 tolerated_low_confidence(0.36) benign(0.185) TCGA-N6-A4V9-01 8 43147752 43147752 A T POTEA RNA 0.06 TCGA-N6-A4V9-01 8 82606828 82606828 T C SLC10A5 Missense_Mutation p.K127R 0.39 tolerated(0.39) benign(0.003) TCGA-N6-A4V9-01 X 148627068 148627068 T C CXorf40A Intron 0.12 TCGA-N6-A4V9-01 X 16170867 16170867 C T GRPR 3'UTR 0.81 TCGA-N6-A4V9-01 X 99852508 99852508 A G TNMD Missense_Mutation p.E144G 0.51 tolerated(0.27) possibly_damaging(0.492) TCGA-N6-A4VC-01 10 115663478 115663478 A G NHLRC2 Missense_Mutation p.T563A 0.53 tolerated(0.18) benign(0.005) TCGA-N6-A4VC-01 11 17794223 17794223 A G KCNC1 Intron 0.57 TCGA-N6-A4VC-01 11 66002813 66002813 G A PACS1 Missense_Mutation p.G716R 0.85 deleterious(0.01) probably_damaging(0.918) TCGA-N6-A4VC-01 12 21032378 21032378 A C SLCO1B3 Missense_Mutation p.T382P 0.11 deleterious(0.02) possibly_damaging(0.811) TCGA-N6-A4VC-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.21 deleterious(0) benign(0.361) TCGA-N6-A4VC-01 12 56563467 56563467 T C SMARCC2 Missense_Mutation p.K823R 0.34 tolerated(0.08) benign(0.292) TCGA-N6-A4VC-01 12 72030371 72030371 T A ZFC3H1 Nonsense_Mutation p.R667* 0.16 TCGA-N6-A4VC-01 14 45623210 45623210 A C FANCM Silent p.R380R 0.81 TCGA-N6-A4VC-01 16 2522127 2522127 G A NTN3 Missense_Mutation p.R142H 0.07 tolerated(0.08) benign(0.037) TCGA-N6-A4VC-01 16 29917116 29917116 C T ASPHD1 Silent p.P357P 0.25 TCGA-N6-A4VC-01 16 55362678 55362678 A G IRX6 Missense_Mutation p.E263G 0.45 deleterious(0.04) benign(0.221) TCGA-N6-A4VC-01 16 75149480 75149480 G C LDHD Missense_Mutation p.R51G 0.18 deleterious(0) possibly_damaging(0.809) TCGA-N6-A4VC-01 17 44953961 44953961 G A WNT9B Silent p.G317G 0.87 TCGA-N6-A4VC-01 17 47696408 47696408 T C SPOP Missense_Mutation p.R139G 0.84 deleterious(0.01) probably_damaging(1) TCGA-N6-A4VC-01 17 47699375 47699375 G A SPOP Missense_Mutation p.R45W 0.83 tolerated(0.11) probably_damaging(0.998) TCGA-N6-A4VC-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.87 deleterious(0) probably_damaging(1) TCGA-N6-A4VC-01 17 7689631 7689631 G A DNAH2 Missense_Mutation p.A2107T 0.24 benign(0.322) TCGA-N6-A4VC-01 18 76752234 76752234 C G SALL3 Missense_Mutation p.I81M 0.21 deleterious(0) unknown(0) TCGA-N6-A4VC-01 19 11327692 11327692 G A DOCK6 Silent p.T1264T 0.28 TCGA-N6-A4VC-01 19 22939890 22939890 G A ZNF99 3'Flank 0.48 TCGA-N6-A4VC-01 19 53762414 53762414 T A VN1R2 Nonsense_Mutation p.Y262* 0.77 TCGA-N6-A4VC-01 1 111490764 111490764 A T LRIF1 Missense_Mutation p.N709K 0.25 tolerated(0.81) possibly_damaging(0.859) TCGA-N6-A4VC-01 1 156213861 156213861 C T PAQR6 Missense_Mutation p.E283K 0.40 deleterious_low_confidence(0) unknown(0) TCGA-N6-A4VC-01 1 184765126 184765126 C G FAM129A Missense_Mutation p.G591A 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-N6-A4VC-01 1 236906280 236906280 C T ACTN2 Missense_Mutation p.R398C 0.34 deleterious(0) probably_damaging(0.999) TCGA-N6-A4VC-01 1 248637452 248637452 G A OR2T3 Silent p.P267P 0.19 TCGA-N6-A4VC-01 1 51826976 51826976 T C EPS15 Missense_Mutation p.D804G 0.10 tolerated(0.2) benign(0.185) TCGA-N6-A4VC-01 1 82416095 82416095 C G LPHN2 Missense_Mutation p.S474C 0.58 tolerated(0.06) benign(0.013) TCGA-N6-A4VC-01 1 89279373 89279373 A G PKN2 Missense_Mutation p.M746V 0.28 deleterious(0.02) possibly_damaging(0.589) TCGA-N6-A4VC-01 20 22563665 22563665 G T FOXA2 Nonsense_Mutation p.S72* 0.60 TCGA-N6-A4VC-01 21 41648105 41648105 C A DSCAM Nonsense_Mutation p.E759* 0.49 TCGA-N6-A4VC-01 22 50988123 50988123 C T KLHDC7B Missense_Mutation p.R510C 0.12 deleterious(0) probably_damaging(0.994) TCGA-N6-A4VC-01 2 179449409 179449409 C A TTN Silent p.A21653A 0.22 TCGA-N6-A4VC-01 2 48018140 48018140 A G MSH6 Missense_Mutation p.N112S 0.40 tolerated(0.65) probably_damaging(0.991) TCGA-N6-A4VC-01 2 65299631 65299631 G - CEP68 Frame_Shift_Del p.E467Dfs*23 0.20 TCGA-N6-A4VC-01 3 151166217 151166217 T C IGSF10 Missense_Mutation p.R518G 0.17 deleterious(0) probably_damaging(0.932) TCGA-N6-A4VC-01 3 42956577 42956577 G A ZNF662 Missense_Mutation p.G364R 0.76 deleterious(0) probably_damaging(0.98) TCGA-N6-A4VC-01 4 153247303 153247303 T C FBXW7 Missense_Mutation p.H500R 0.51 deleterious(0) probably_damaging(1) TCGA-N6-A4VC-01 4 48492843 48492843 G A ZAR1 Missense_Mutation p.V179I 0.82 tolerated(0.28) benign(0.082) TCGA-N6-A4VC-01 4 56847395 56847395 T C CEP135 Silent p.A543A 0.42 TCGA-N6-A4VC-01 5 135276381 135276381 T C FBXL21 RNA 0.27 TCGA-N6-A4VC-01 5 160721270 160721270 G A GABRB2 Nonsense_Mutation p.R453* 0.49 TCGA-N6-A4VC-01 6 160977179 160977179 G A LPA Silent p.Y1617Y 0.31 TCGA-N6-A4VC-01 6 31526160 31526160 G A NFKBIL1 Silent p.G306G 0.40 TCGA-N6-A4VC-01 6 47847369 47847369 A T PTCHD4 Missense_Mutation p.I404N 0.12 deleterious(0.01) possibly_damaging(0.678) TCGA-N6-A4VC-01 6 7585589 7585589 C T DSP Silent p.F2698F 0.21 TCGA-N6-A4VC-01 7 11676068 11676068 C G THSD7A Missense_Mutation p.E237D 0.43 tolerated(0.08) benign(0.05) TCGA-N6-A4VC-01 7 91851246 91851246 A T KRIT1 Missense_Mutation p.D511E 0.12 deleterious(0.02) benign(0.374) TCGA-N6-A4VC-01 9 37785000 37785000 G A EXOSC3 Silent p.G14G 0.94 TCGA-N6-A4VC-01 X 10417566 10417566 C T MID1 Missense_Mutation p.A616T 0.51 tolerated(0.6) benign(0.016) TCGA-N6-A4VC-01 X 105011735 105011735 G T IL1RAPL2 3'UTR 0.30 TCGA-N6-A4VC-01 X 37028481 37028481 C A FAM47C Silent p.L666L 0.10 TCGA-N6-A4VC-01 X 63410192 63410192 G A AMER1 Missense_Mutation p.A992V 0.20 deleterious(0.03) benign(0.169) TCGA-N6-A4VC-01 X 68049609 68049609 C A EFNB1 5'UTR 0.60 TCGA-N6-A4VC-01 X 70607293 70607293 T C TAF1 Silent p.H823H 0.10 TCGA-N6-A4VC-01 X 74334628 74334628 C A ABCB7 Missense_Mutation p.L70F 0.15 tolerated(0.38) benign(0.005) TCGA-N6-A4VC-01 X 86888868 86888868 T G KLHL4 Missense_Mutation p.S557A 0.08 tolerated(0.16) benign(0.045) TCGA-N6-A4VD-01 10 115540379 115540379 G A PLEKHS1 3'Flank 0.38 TCGA-N6-A4VD-01 10 124389946 124389946 C T DMBT1 Nonsense_Mutation p.R1860* 0.85 TCGA-N6-A4VD-01 10 127724804 127724804 G A ADAM12 Nonsense_Mutation p.R817* 0.44 TCGA-N6-A4VD-01 10 24810839 24810839 G A KIAA1217 Missense_Mutation p.V813I 0.45 tolerated(0.31) benign(0.008) TCGA-N6-A4VD-01 10 27537159 27537159 C T RP11-85G18.6 Intron 0.43 TCGA-N6-A4VD-01 10 5496339 5496341 CTC - NET1 In_Frame_Del p.L294del 0.49 TCGA-N6-A4VD-01 10 88705137 88705137 G A MMRN2 Silent p.C130C 0.75 TCGA-N6-A4VD-01 10 89692980 89692980 A G PTEN Missense_Mutation p.Y155C 0.93 deleterious(0) probably_damaging(1) TCGA-N6-A4VD-01 11 126306737 126306737 G A KIRREL3 Silent p.S507S 0.39 TCGA-N6-A4VD-01 11 134179612 134179612 G A GLB1L3 Missense_Mutation p.G352R 0.20 deleterious(0) probably_damaging(0.998) TCGA-N6-A4VD-01 11 14891208 14891208 G A PDE3B 3'UTR 0.43 TCGA-N6-A4VD-01 11 18159005 18159005 C T MRGPRX3 Missense_Mutation p.R86C 0.40 tolerated(0.18) benign(0.004) TCGA-N6-A4VD-01 11 4608812 4608812 G A OR52I2 Missense_Mutation p.G257D 0.38 tolerated(0.33) benign(0.049) TCGA-N6-A4VD-01 11 46388900 46388900 C - DGKZ Frame_Shift_Del p.P264Rfs*44 0.24 TCGA-N6-A4VD-01 11 55432696 55432696 C G OR4C6 Missense_Mutation p.N18K 0.39 deleterious_low_confidence(0.03) benign(0.424) TCGA-N6-A4VD-01 11 61732251 61732259 GCCAAGCCA - FTH1 In_Frame_Del p.G165_A167del 0.29 TCGA-N6-A4VD-01 11 65088659 65088659 C T CDC42EP2 Missense_Mutation p.P97L 0.39 tolerated(0.4) benign(0.015) TCGA-N6-A4VD-01 12 2062350 2062351 - TGG DCP1B In_Frame_Ins p.H251dup 0.31 TCGA-N6-A4VD-01 12 49169177 49169177 C T ADCY6 Missense_Mutation p.R630H 0.47 deleterious(0.03) probably_damaging(0.995) TCGA-N6-A4VD-01 12 58009072 58009072 C T ARHGEF25 Missense_Mutation p.T377M 0.35 deleterious(0.01) possibly_damaging(0.865) TCGA-N6-A4VD-01 12 95531317 95531317 G A FGD6 Missense_Mutation p.A992V 0.39 deleterious(0.01) benign(0.314) TCGA-N6-A4VD-01 13 26594146 26594146 C - ATP8A2 3'UTR 0.20 TCGA-N6-A4VD-01 13 28537414 28537414 C T CDX2 Silent p.P260P 0.50 TCGA-N6-A4VD-01 13 28896990 28896990 C T FLT1 Missense_Mutation p.E964K 0.35 tolerated(0.15) probably_damaging(0.995) TCGA-N6-A4VD-01 14 106092291 106092291 G A IGHG4 Missense_Mutation p.T38M 0.44 deleterious(0.03) probably_damaging(0.913) TCGA-N6-A4VD-01 14 70346406 70346406 C A SMOC1 Missense_Mutation p.A4E 0.67 tolerated_low_confidence(0.08) benign(0.018) TCGA-N6-A4VD-01 14 76175603 76175603 G T TTLL5 Intron 0.45 TCGA-N6-A4VD-01 15 43441229 43441229 C T TMEM62 Missense_Mutation p.S249L 0.47 deleterious(0.01) benign(0.329) TCGA-N6-A4VD-01 15 66797660 66797660 T C RPL4 5'Flank 0.44 TCGA-N6-A4VD-01 16 14743799 14743799 G A BFAR Missense_Mutation p.E203K 0.33 tolerated(0.13) benign(0.011) TCGA-N6-A4VD-01 16 67219060 67219060 G A EXOC3L1 Silent p.R576R 0.49 TCGA-N6-A4VD-01 16 75258810 75258810 C T CTRB1 3'UTR 0.42 TCGA-N6-A4VD-01 16 89167646 89167646 C T ACSF3 Missense_Mutation p.P186L 0.53 tolerated(0.36) benign(0.004) TCGA-N6-A4VD-01 16 89922602 89922602 C A SPIRE2 Silent p.R354R 0.39 TCGA-N6-A4VD-01 17 17078626 17078626 C T MPRIP Missense_Mutation p.A870V 0.13 deleterious(0.05) possibly_damaging(0.757) TCGA-N6-A4VD-01 17 30611720 30611720 C T RHBDL3 Missense_Mutation p.R60W 0.40 tolerated(0.19) probably_damaging(0.93) TCGA-N6-A4VD-01 17 40481653 40481653 A C STAT3 Missense_Mutation p.F384L 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-N6-A4VD-01 17 44782178 44782178 G A NSF Silent p.T476T 0.35 TCGA-N6-A4VD-01 17 76395556 76395556 C T PGS1 Silent p.N213N 0.38 TCGA-N6-A4VD-01 18 43437926 43437926 C T EPG5 Missense_Mutation p.R2445Q 0.37 tolerated(0.09) benign(0.002) TCGA-N6-A4VD-01 19 17338751 17338751 T C OCEL1 Silent p.C185C 0.35 TCGA-N6-A4VD-01 19 1912242 1912242 G A ADAT3 Missense_Mutation p.V66I 0.53 tolerated(1) benign(0.004) TCGA-N6-A4VD-01 19 41743930 41743930 G A AXL Missense_Mutation p.V289M 0.40 deleterious(0.02) probably_damaging(0.937) TCGA-N6-A4VD-01 19 42794634 42794634 C T CIC Missense_Mutation p.R572W 0.40 probably_damaging(0.973) TCGA-N6-A4VD-01 19 52716212 52716212 C T PPP2R1A Missense_Mutation p.S219L 0.46 deleterious(0) probably_damaging(0.928) TCGA-N6-A4VD-01 19 55593930 55593930 G A EPS8L1 Missense_Mutation p.E392K 0.35 tolerated(0.16) benign(0.009) TCGA-N6-A4VD-01 19 56569658 56569658 C T NLRP5 Missense_Mutation p.L1118F 0.42 deleterious(0.01) probably_damaging(0.953) TCGA-N6-A4VD-01 1 144902945 144902945 T C PDE4DIP Intron 0.47 TCGA-N6-A4VD-01 1 157551320 157551320 C T FCRL4 Splice_Site p.X417_splice 0.45 TCGA-N6-A4VD-01 1 158618428 158618428 C T SPTA1 Silent p.T1195T 0.47 TCGA-N6-A4VD-01 1 213302876 213302876 C T RPS6KC1 Missense_Mutation p.S160F 0.34 deleterious(0) probably_damaging(0.993) TCGA-N6-A4VD-01 1 220287663 220287664 - A IARS2 Frame_Shift_Ins p.V499Gfs*14 0.23 TCGA-N6-A4VD-01 1 240371620 240371620 G A FMN2 Missense_Mutation p.G1170R 0.30 unknown(0) TCGA-N6-A4VD-01 1 44474144 44474144 G A SLC6A9 Silent p.A230A 0.37 TCGA-N6-A4VD-01 1 45268952 45268952 G A PLK3 Missense_Mutation p.D321N 0.38 deleterious(0.01) benign(0.262) TCGA-N6-A4VD-01 1 57206384 57206384 C T C1orf168 Silent p.S563S 0.33 TCGA-N6-A4VD-01 20 58569315 58569315 G T CDH26 Silent p.P479P 0.41 TCGA-N6-A4VD-01 22 50728775 50728775 G A PLXNB2 Missense_Mutation p.P80L 0.75 deleterious(0) probably_damaging(1) TCGA-N6-A4VD-01 2 100266099 100266099 A T AFF3 Silent p.A416A 0.23 TCGA-N6-A4VD-01 2 100266101 100266101 C T AFF3 Missense_Mutation p.A416T 0.21 tolerated(0.87) benign(0.002) TCGA-N6-A4VD-01 2 1457506 1457506 C T TPO Nonsense_Mutation p.R175* 0.45 TCGA-N6-A4VD-01 2 158958519 158958519 C G UPP2 Intron 0.47 TCGA-N6-A4VD-01 2 159215037 159215037 T C CCDC148 Missense_Mutation p.Y24C 0.39 deleterious(0) probably_damaging(0.966) TCGA-N6-A4VD-01 2 170557640 170557640 G A PHOSPHO2 Silent p.K53K 0.47 TCGA-N6-A4VD-01 2 204571286 204571286 G A CD28 5'UTR 0.25 TCGA-N6-A4VD-01 2 21245884 21245884 C T APOB Missense_Mutation p.V879M 0.36 benign(0.195) TCGA-N6-A4VD-01 2 21256329 21256329 G A APOB Silent p.A322A 0.42 TCGA-N6-A4VD-01 2 220112473 220112473 T A STK16 Missense_Mutation p.D217E 0.56 deleterious(0) probably_damaging(0.977) TCGA-N6-A4VD-01 2 220370460 220370460 G A GMPPA Missense_Mutation p.A293T 0.40 deleterious(0) probably_damaging(1) TCGA-N6-A4VD-01 2 241829466 241829466 G A C2orf54 Missense_Mutation p.R284C 0.36 tolerated(0.05) benign(0.027) TCGA-N6-A4VD-01 2 79254978 79254978 G A REG3G Missense_Mutation p.V127M 0.38 tolerated(0.12) benign(0.306) TCGA-N6-A4VD-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.83 tolerated(0.11) possibly_damaging(0.529) TCGA-N6-A4VD-01 3 38592976 38592977 TC CCATCAGTCTGAGGAT SCN5A Frame_Shift_Ins p.R1629Hfs*7 0.22 TCGA-N6-A4VD-01 3 46713390 46713390 C T ALS2CL Missense_Mutation p.V890M 0.38 deleterious(0) probably_damaging(0.981) TCGA-N6-A4VD-01 3 52833799 52833799 G A ITIH3 Missense_Mutation p.D313N 0.25 deleterious(0) probably_damaging(1) TCGA-N6-A4VD-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.42 deleterious(0.03) probably_damaging(1) TCGA-N6-A4VD-01 4 38138875 38138875 G A TBC1D1 Silent p.T1142T 0.50 TCGA-N6-A4VD-01 4 47033587 47033587 C T GABRB1 5'UTR 0.47 TCGA-N6-A4VD-01 5 112312615 112312615 G A DCP2 5'UTR 0.37 TCGA-N6-A4VD-01 5 140176114 140176114 C T PCDHA2 Missense_Mutation p.P522L 0.56 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-N6-A4VD-01 5 140515028 140515028 G A PCDHB5 Silent p.A4A 0.29 TCGA-N6-A4VD-01 5 149497300 149497300 G A PDGFRB Silent p.S1006S 0.33 TCGA-N6-A4VD-01 5 164028103 164028103 C T CTC-340A15.2 RNA 0.29 TCGA-N6-A4VD-01 5 171509417 171509417 G A STK10 Silent p.R634R 0.32 TCGA-N6-A4VD-01 6 116833488 116833488 G T TRAPPC3L Intron 0.33 TCGA-N6-A4VD-01 6 127836020 127836021 TG - SOGA3 Frame_Shift_Del p.Q425Dfs*29 0.27 TCGA-N6-A4VD-01 6 167550589 167550589 G A CCR6 Missense_Mutation p.E291K 0.32 tolerated(0.08) benign(0.067) TCGA-N6-A4VD-01 6 22290511 22290511 C T PRL Silent p.T128T 0.42 TCGA-N6-A4VD-01 6 27833147 27833147 C T HIST1H2AL Silent p.G5G 0.38 TCGA-N6-A4VD-01 6 52762720 52762720 C A GSTA3 Missense_Mutation p.G150V 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-N6-A4VD-01 7 100187923 100187923 C T FBXO24 Missense_Mutation p.R127C 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.689) TCGA-N6-A4VD-01 7 133692545 133692545 A G EXOC4 Missense_Mutation p.T882A 0.34 deleterious(0.01) possibly_damaging(0.849) TCGA-N6-A4VD-01 7 2473140 2473140 G A CHST12 Missense_Mutation p.R289H 0.42 tolerated(0.14) benign(0.001) TCGA-N6-A4VD-01 7 35674870 35674870 G T HERPUD2 Missense_Mutation p.F272L 0.43 tolerated(1) benign(0) TCGA-N6-A4VD-01 7 80290415 80290415 C T CD36 Silent p.D106D 0.32 TCGA-N6-A4VD-01 7 86542401 86542401 C T KIAA1324L Silent p.S617S 0.34 TCGA-N6-A4VD-01 7 93065414 93065414 C T CALCR Silent p.A367A 0.31 TCGA-N6-A4VD-01 7 99171161 99171161 C T ZNF655 Missense_Mutation p.A512V 0.40 deleterious(0.03) possibly_damaging(0.682) TCGA-N6-A4VD-01 8 10467031 10467031 G A RP1L1 Missense_Mutation p.T1526M 0.40 unknown(0) TCGA-N6-A4VD-01 8 113254010 113254010 A G CSMD3 Silent p.G3469G 0.35 TCGA-N6-A4VD-01 8 32505335 32505335 G A NRG1 Intron 0.34 TCGA-N6-A4VD-01 8 38775463 38775463 C T PLEKHA2 Missense_Mutation p.R6W 0.48 deleterious(0) probably_damaging(1) TCGA-N6-A4VD-01 8 77766792 77766792 G A ZFHX4 Silent p.P2545P 0.36 TCGA-N6-A4VD-01 8 99441462 99441462 C T KCNS2 Missense_Mutation p.R419C 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-N6-A4VD-01 9 86894919 86894919 A G SLC28A3 Missense_Mutation p.V600A 0.31 tolerated(0.07) benign(0.032) TCGA-N6-A4VD-01 9 97847760 97847760 G A C9orf3 Intron 0.33 TCGA-N6-A4VD-01 X 105281162 105281162 T C SERPINA7 5'UTR 0.50 TCGA-N6-A4VD-01 X 119249405 119249405 C T RHOXF1 Missense_Mutation p.R123Q 0.43 tolerated(1) benign(0) TCGA-N6-A4VD-01 X 129149592 129149592 G - BCORL1 Frame_Shift_Del p.P950Lfs*25 0.25 TCGA-N6-A4VD-01 X 129190033 129190034 TG - BCORL1 Frame_Shift_Del p.V1687Gfs*57 0.27 TCGA-N6-A4VD-01 X 142967368 142967368 G C UBE2NL Missense_Mutation p.E56Q 0.38 deleterious(0.04) possibly_damaging(0.843) TCGA-N6-A4VD-01 X 147924917 147924917 C A AFF2 Missense_Mutation p.P408T 0.39 tolerated(0.16) probably_damaging(0.998) TCGA-N6-A4VD-01 X 153039479 153039479 C T PLXNB3 Missense_Mutation p.R1172C 0.29 tolerated(0.12) possibly_damaging(0.764) TCGA-N6-A4VD-01 X 153581007 153581007 C T FLNA Missense_Mutation p.R2139Q 0.38 deleterious(0.04) benign(0.075) TCGA-N6-A4VD-01 X 26212339 26212339 G A MAGEB6 Missense_Mutation p.V126M 0.40 tolerated(0.17) benign(0.001) TCGA-N6-A4VD-01 X 30872877 30872877 G A TAB3 Missense_Mutation p.S302L 0.51 tolerated(0.08) probably_damaging(0.983) TCGA-N6-A4VD-01 X 48558921 48558921 A C SUV39H1 Missense_Mutation p.K202T 0.33 tolerated(0.58) benign(0.008) TCGA-N6-A4VD-01 X 48762195 48762195 C T SLC35A2 Missense_Mutation p.V331I 0.30 deleterious(0.03) probably_damaging(0.949) TCGA-N6-A4VD-01 X 55757849 55757849 C T RRAGB Nonsense_Mutation p.R144* 0.33 TCGA-N6-A4VD-01 X 73744511 73744511 C A SLC16A2 Missense_Mutation p.T298N 0.44 tolerated(0.34) benign(0.005) TCGA-N6-A4VD-01 X 83128836 83128836 T A CYLC1 Missense_Mutation p.S374T 0.52 deleterious(0.04) unknown(0) TCGA-N6-A4VD-01 X 85218875 85218875 G A CHM Missense_Mutation p.A166V 0.37 tolerated(0.26) benign(0.032) TCGA-N6-A4VE-01 10 102300458 102300458 A C HIF1AN Missense_Mutation p.N166H 0.83 deleterious(0.01) probably_damaging(0.998) TCGA-N6-A4VE-01 10 44873206 44873206 C A CXCL12 Silent p.G138G 0.55 TCGA-N6-A4VE-01 11 102496054 102496054 C G MMP20 5'UTR 0.13 TCGA-N6-A4VE-01 11 118506246 118506246 C G PHLDB1 Missense_Mutation p.R839G 0.22 tolerated(0.08) benign(0.006) TCGA-N6-A4VE-01 11 48347056 48347056 C A OR4C3 Silent p.V188V 0.14 TCGA-N6-A4VE-01 11 68326128 68326128 C T PPP6R3 Missense_Mutation p.L276F 0.24 tolerated(0.09) benign(0.315) TCGA-N6-A4VE-01 11 71712330 71712332 ATT - IL18BP In_Frame_Del p.I107del 0.56 TCGA-N6-A4VE-01 12 11286029 11286029 G A TAS2R30 Missense_Mutation p.P272L 0.56 deleterious(0.05) benign(0.105) TCGA-N6-A4VE-01 12 11286045 11286045 T C TAS2R30 Missense_Mutation p.I267V 0.55 tolerated(0.3) benign(0.005) TCGA-N6-A4VE-01 12 124008056 124008056 A T RILPL1 Missense_Mutation p.F149Y 0.21 tolerated(0.77) benign(0.384) TCGA-N6-A4VE-01 12 42745780 42745780 G A PPHLN1 Missense_Mutation p.V56I 0.34 tolerated(0.14) benign(0.057) TCGA-N6-A4VE-01 12 44148360 44148360 T G PUS7L Missense_Mutation p.K230T 0.11 tolerated(1) benign(0.004) TCGA-N6-A4VE-01 12 52387803 52387803 G T ACVR1B Missense_Mutation p.C517F 0.54 deleterious(0) probably_damaging(0.999) TCGA-N6-A4VE-01 12 52448894 52448894 G A NR4A1 Missense_Mutation p.G274D 0.48 tolerated(0.12) benign(0.182) TCGA-N6-A4VE-01 12 53038709 53038709 A G KRT2 3'UTR 0.50 TCGA-N6-A4VE-01 12 56109922 56109922 G A BLOC1S1 Missense_Mutation p.M29I 0.48 deleterious(0) probably_damaging(0.989) TCGA-N6-A4VE-01 12 6696569 6696569 A C CHD4 Missense_Mutation p.V1287G 0.34 deleterious(0.01) possibly_damaging(0.713) TCGA-N6-A4VE-01 12 8995770 8995770 A C A2ML1 Missense_Mutation p.Q430P 0.54 tolerated(0.18) benign(0.162) TCGA-N6-A4VE-01 13 41507845 41507845 G C ELF1 Missense_Mutation p.P526A 0.92 tolerated(0.28) benign(0.287) TCGA-N6-A4VE-01 14 20528715 20528715 A G OR4L1 Missense_Mutation p.H171R 0.48 deleterious(0) benign(0.21) TCGA-N6-A4VE-01 14 47324352 47324352 A C MDGA2 Missense_Mutation p.L920V 0.17 deleterious(0) probably_damaging(0.996) TCGA-N6-A4VE-01 14 92506029 92506029 T C TRIP11 Translation_Start_Site p.M1? 0.75 deleterious(0.01) unknown(0) TCGA-N6-A4VE-01 14 95557638 95557638 T A DICER1 Missense_Mutation p.D1810V 0.48 deleterious(0) probably_damaging(1) TCGA-N6-A4VE-01 15 36872095 36872095 G T C15orf41 Missense_Mutation p.A12S 0.42 tolerated(0.08) benign(0.048) TCGA-N6-A4VE-01 15 42178339 42178339 G A SPTBN5 Missense_Mutation p.R372W 0.92 possibly_damaging(0.899) TCGA-N6-A4VE-01 16 2042103 2042103 C G SYNGR3 Silent p.L76L 0.69 TCGA-N6-A4VE-01 17 4071081 4071086 CCCCAC - ANKFY1 In_Frame_Del p.G1208_G1209del 0.96 TCGA-N6-A4VE-01 17 55062742 55062742 G T SCPEP1 Missense_Mutation p.G77C 0.22 deleterious(0) probably_damaging(1) TCGA-N6-A4VE-01 17 7577134 7577134 G - TP53 Frame_Shift_Del p.N268Kfs*77 0.48 TCGA-N6-A4VE-01 17 7577552 7577552 C A TP53 Missense_Mutation p.M243I 0.94 deleterious(0) probably_damaging(0.997) TCGA-N6-A4VE-01 19 10221193 10221193 C A PPAN Missense_Mutation p.L312M 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-N6-A4VE-01 19 33604672 33604672 G T GPATCH1 Splice_Site p.X631_splice 0.36 TCGA-N6-A4VE-01 19 36229558 36229558 C T KMT2B 3'UTR 0.44 TCGA-N6-A4VE-01 19 38713335 38713335 A C DPF1 Missense_Mutation p.F42V 0.38 deleterious(0.05) possibly_damaging(0.786) TCGA-N6-A4VE-01 19 45024554 45024554 G C CEACAM20 RNA 0.54 TCGA-N6-A4VE-01 19 53058029 53058029 G A ZNF808 Silent p.E620E 0.51 TCGA-N6-A4VE-01 19 55653236 55653236 C T TNNT1 Missense_Mutation p.V61I 0.13 deleterious(0.03) probably_damaging(0.993) TCGA-N6-A4VE-01 19 58438844 58438844 A G ZNF418 Silent p.C235C 0.15 TCGA-N6-A4VE-01 1 103470202 103470202 G T COL11A1 Missense_Mutation p.Q621K 0.22 unknown(0) TCGA-N6-A4VE-01 1 209957017 209957017 C T C1orf74 5'UTR 0.61 TCGA-N6-A4VE-01 1 235972583 235972583 T C LYST Missense_Mutation p.H512R 0.65 deleterious(0) probably_damaging(0.985) TCGA-N6-A4VE-01 1 33245110 33245110 C T YARS Missense_Mutation p.R450H 0.39 deleterious_low_confidence(0.02) benign(0.013) TCGA-N6-A4VE-01 1 45809441 45809441 C G TOE1 3'UTR 0.35 TCGA-N6-A4VE-01 1 47284343 47284343 G C CYP4B1 Missense_Mutation p.V466L 0.57 deleterious(0.01) possibly_damaging(0.768) TCGA-N6-A4VE-01 1 90484253 90484253 G A ZNF326 Missense_Mutation p.V362M 0.50 deleterious(0) probably_damaging(0.992) TCGA-N6-A4VE-01 20 59829994 59829994 G T CDH4 Splice_Site p.X57_splice 0.37 TCGA-N6-A4VE-01 21 27277388 27277388 A T APP Silent p.V637V 0.42 TCGA-N6-A4VE-01 22 41739574 41739574 T A ZC3H7B Missense_Mutation p.C485S 0.48 deleterious(0) probably_damaging(0.994) TCGA-N6-A4VE-01 22 45914649 45914649 C T FBLN1 Missense_Mutation p.T56M 1.00 deleterious(0.01) benign(0.161) TCGA-N6-A4VE-01 2 109513391 109513391 G C EDAR Missense_Mutation p.P440R 0.54 tolerated_low_confidence(0.4) benign(0.07) TCGA-N6-A4VE-01 2 152711818 152711818 C A CACNB4 Missense_Mutation p.D314Y 0.13 deleterious(0.01) probably_damaging(1) TCGA-N6-A4VE-01 2 1652949 1652949 C T PXDN Missense_Mutation p.R868Q 0.33 deleterious(0) probably_damaging(0.96) TCGA-N6-A4VE-01 2 167289081 167289081 T A SCN7A Missense_Mutation p.H780L 0.42 tolerated(0.3) benign(0.079) TCGA-N6-A4VE-01 2 238999914 238999914 G C SCLY Intron 0.20 TCGA-N6-A4VE-01 2 31605884 31605884 G C XDH Missense_Mutation p.Q341E 0.59 deleterious(0) probably_damaging(0.999) TCGA-N6-A4VE-01 2 89999462 89999462 T A IGKV2D-28 Missense_Mutation p.S88R 0.56 deleterious(0.01) probably_damaging(0.923) TCGA-N6-A4VE-01 2 9663433 9663433 C T ADAM17 Missense_Mutation p.R263Q 0.54 tolerated(0.12) possibly_damaging(0.619) TCGA-N6-A4VE-01 3 10146462 10146462 C T FANCD2OS 5'UTR 0.49 TCGA-N6-A4VE-01 3 115805175 115805175 T C LSAMP Silent p.V128V 0.18 TCGA-N6-A4VE-01 3 127439984 127439984 G C MGLL Missense_Mutation p.T141R 0.28 deleterious(0) possibly_damaging(0.843) TCGA-N6-A4VE-01 3 154056029 154056029 C A GPR149 Missense_Mutation p.C552F 0.31 deleterious(0) probably_damaging(0.999) TCGA-N6-A4VE-01 3 39185088 39185088 C G CSRNP1 Missense_Mutation p.E410Q 0.18 tolerated(0.26) possibly_damaging(0.67) TCGA-N6-A4VE-01 4 140278710 140278710 G A NAA15 Splice_Site p.X419_splice 0.60 TCGA-N6-A4VE-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.21 deleterious(0.03) probably_damaging(1) TCGA-N6-A4VE-01 4 39230233 39230233 T C WDR19 Silent p.H635H 0.51 TCGA-N6-A4VE-01 4 87696407 87696407 T A PTPN13 Silent p.V1869V 0.15 TCGA-N6-A4VE-01 5 138282944 138282944 G C SIL1 Silent p.P416P 0.59 TCGA-N6-A4VE-01 5 40691917 40691917 T C PTGER4 Silent p.L302L 0.18 TCGA-N6-A4VE-01 6 29323301 29323301 G T OR5V1 Silent p.T224T 0.15 TCGA-N6-A4VE-01 6 31922417 31922417 A T NELFE Missense_Mutation p.D219E 0.22 tolerated(0.84) unknown(0) TCGA-N6-A4VE-01 6 42689572 42689572 G T PRPH2 Silent p.G167G 0.08 TCGA-N6-A4VE-01 6 90024791 90024791 C A GABRR2 Missense_Mutation p.V32L 0.04 tolerated(0.84) benign(0) TCGA-N6-A4VE-01 7 82764634 82764634 C T PCLO Silent p.Q744Q 0.25 TCGA-N6-A4VE-01 7 86416020 86416020 C T GRM3 Silent p.G304G 0.28 TCGA-N6-A4VE-01 7 87780297 87780297 G A ADAM22 Missense_Mutation p.C523Y 0.63 deleterious(0) probably_damaging(1) TCGA-N6-A4VE-01 7 98457843 98457843 G C TMEM130 Silent p.L170L 0.33 TCGA-N6-A4VE-01 8 100733115 100733115 A G VPS13B Missense_Mutation p.Y2322C 0.38 tolerated(0.14) benign(0.206) TCGA-N6-A4VE-01 9 136915512 136915512 G T BRD3 Missense_Mutation p.T233K 0.95 deleterious(0.04) possibly_damaging(0.504) TCGA-N6-A4VE-01 9 139981513 139981513 C G MAN1B1 Missense_Mutation p.T21R 0.29 deleterious_low_confidence(0) possibly_damaging(0.484) TCGA-N6-A4VE-01 9 21481699 21481699 A G IFNE 5'UTR 0.26 TCGA-N6-A4VE-01 9 33295250 33295250 C T NFX1 Silent p.L286L 0.59 TCGA-N6-A4VE-01 X 101912011 101912011 G - GPRASP1 Frame_Shift_Del p.G1058Vfs*8 0.31 TCGA-N6-A4VE-01 X 18622158 18622158 G A CDKL5 Missense_Mutation p.A372T 0.21 tolerated_low_confidence(0.09) possibly_damaging(0.483) TCGA-N6-A4VE-01 X 53611281 53611281 G A HUWE1 Missense_Mutation p.R1676C 0.09 probably_damaging(1) TCGA-N6-A4VF-01 10 27538420 27538420 G C RP11-85G18.6 Intron 0.47 TCGA-N6-A4VF-01 10 89692904 89692904 C G PTEN Missense_Mutation p.R130G 0.46 deleterious(0) probably_damaging(0.999) TCGA-N6-A4VF-01 11 117391968 117391968 G A DSCAML1 Missense_Mutation p.R424C 0.35 deleterious(0.04) possibly_damaging(0.764) TCGA-N6-A4VF-01 11 124440650 124440650 C A OR8A1 Missense_Mutation p.T229K 0.31 deleterious(0.01) benign(0.049) TCGA-N6-A4VF-01 11 18755102 18755102 C T PTPN5 Splice_Site p.X360_splice 0.37 TCGA-N6-A4VF-01 11 30034018 30034018 C T KCNA4 Missense_Mutation p.A70T 0.16 tolerated_low_confidence(0.11) unknown(0) TCGA-N6-A4VF-01 11 40137424 40137424 G A LRRC4C Missense_Mutation p.P140L 0.28 deleterious(0) probably_damaging(1) TCGA-N6-A4VF-01 11 95718733 95718733 C T MAML2 Missense_Mutation p.R806K 0.24 unknown(0) TCGA-N6-A4VF-01 12 107236410 107236410 G C RIC8B Missense_Mutation p.D294H 0.21 deleterious(0) probably_damaging(1) TCGA-N6-A4VF-01 12 56515410 56515410 C T ZC3H10 Missense_Mutation p.P355L 0.34 tolerated(0.65) possibly_damaging(0.766) TCGA-N6-A4VF-01 12 57871401 57871401 G T ARHGAP9 Silent p.R199R 0.28 TCGA-N6-A4VF-01 12 78400511 78400511 G A NAV3 Missense_Mutation p.R398H 0.38 deleterious(0) probably_damaging(0.977) TCGA-N6-A4VF-01 13 113803456 113803456 C T F10 Silent p.F364F 0.57 TCGA-N6-A4VF-01 14 36780847 36780847 C T MBIP Missense_Mutation p.R241Q 0.31 tolerated(0.29) possibly_damaging(0.631) TCGA-N6-A4VF-01 14 57736076 57736076 C A AP5M1 Missense_Mutation p.T15N 0.12 tolerated(0.35) benign(0.005) TCGA-N6-A4VF-01 15 63449445 63449445 T C RPS27L Intron 0.36 TCGA-N6-A4VF-01 15 88679256 88679256 T A NTRK3 Missense_Mutation p.T261S 0.09 tolerated(0.81) benign(0.088) TCGA-N6-A4VF-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.34 deleterious(0) probably_damaging(1) TCGA-N6-A4VF-01 18 31324283 31324283 G A ASXL3 Missense_Mutation p.V1491I 0.31 benign(0.001) TCGA-N6-A4VF-01 18 5428407 5428407 G A EPB41L3 Missense_Mutation p.R324C 0.29 deleterious(0) probably_damaging(0.999) TCGA-N6-A4VF-01 18 76754280 76754280 C T SALL3 Silent p.G763G 0.38 TCGA-N6-A4VF-01 19 10781723 10781723 A T ILF3 Missense_Mutation p.E26V 0.23 deleterious(0) probably_damaging(0.999) TCGA-N6-A4VF-01 19 46289098 46289102 ACCCC CT DMWD In_Frame_Del p.R551_G552delinsQ 0.49 TCGA-N6-A4VF-01 19 49469955 49469955 A C FTL Missense_Mutation p.E164A 0.10 deleterious(0) possibly_damaging(0.669) TCGA-N6-A4VF-01 1 10715751 10715751 G A CASZ1 Silent p.H540H 0.37 TCGA-N6-A4VF-01 1 160054319 160054319 C T KCNJ9 Missense_Mutation p.R167C 0.50 deleterious(0.01) probably_damaging(1) TCGA-N6-A4VF-01 1 170967557 170967557 G A MROH9 Intron 0.19 TCGA-N6-A4VF-01 1 22161368 22161368 G A HSPG2 Silent p.F3508F 0.33 TCGA-N6-A4VF-01 1 66081728 66081728 G A LEPR Missense_Mutation p.R678K 0.33 tolerated(0.17) benign(0.005) TCGA-N6-A4VF-01 1 985167 985168 - C AGRN Frame_Shift_Ins p.R1580Pfs*9 0.27 TCGA-N6-A4VF-01 20 30155955 30155955 C G HM13 Missense_Mutation p.A370G 0.12 tolerated_low_confidence(0.06) benign(0.302) TCGA-N6-A4VF-01 20 30919224 30919224 C T KIF3B 3'UTR 0.33 TCGA-N6-A4VF-01 20 33572744 33572744 C T MYH7B Missense_Mutation p.R288C 0.32 probably_damaging(1) TCGA-N6-A4VF-01 20 6022239 6022239 G A LRRN4 Missense_Mutation p.P551L 0.25 deleterious(0) possibly_damaging(0.664) TCGA-N6-A4VF-01 2 132266164 132266164 C T AC093838.4 RNA 0.48 TCGA-N6-A4VF-01 2 234601884 234601884 T G UGT1A6 Nonsense_Mutation p.Y78* 0.37 TCGA-N6-A4VF-01 3 108836924 108836924 G A MORC1 5'UTR 0.50 TCGA-N6-A4VF-01 3 134670597 134670597 C T EPHB1 Missense_Mutation p.R170W 0.44 deleterious(0.02) probably_damaging(0.968) TCGA-N6-A4VF-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.35 deleterious(0.02) probably_damaging(0.959) TCGA-N6-A4VF-01 3 52858518 52858518 C T ITIH4 Missense_Mutation p.V314I 0.15 tolerated(0.3) benign(0.025) TCGA-N6-A4VF-01 5 140183011 140183011 C T PCDHA3 Silent p.S743S 0.34 TCGA-N6-A4VF-01 5 140751623 140751623 C T PCDHGB3 Silent p.D554D 0.27 TCGA-N6-A4VF-01 5 176899273 176899273 C T DBN1 5'UTR 0.12 TCGA-N6-A4VF-01 6 111631214 111631214 G A REV3L Missense_Mutation p.L2962F 0.29 deleterious(0) probably_damaging(1) TCGA-N6-A4VF-01 6 134491532 134491532 G C SGK1 Silent p.T485T 0.39 TCGA-N6-A4VF-01 6 136710584 136710584 G A MAP7 Missense_Mutation p.R128W 0.35 deleterious(0) probably_damaging(1) TCGA-N6-A4VF-01 6 21596141 21596141 C G SOX4 Missense_Mutation p.S459W 0.20 deleterious(0) unknown(0) TCGA-N6-A4VF-01 6 29760284 29760284 C T HLA-V RNA 0.29 TCGA-N6-A4VF-01 6 7845380 7845380 C T BMP6 Silent p.Y224Y 0.41 TCGA-N6-A4VF-01 7 100348502 100348502 C T ZAN Missense_Mutation p.H502Y 0.40 possibly_damaging(0.609) TCGA-N6-A4VF-01 7 150094403 150094403 G A ZNF775 Silent p.P278P 0.34 TCGA-N6-A4VF-01 7 73731941 73731941 G A CLIP2 Missense_Mutation p.R22Q 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-N6-A4VF-01 8 144892705 144892705 G A SCRIB Missense_Mutation p.R492W 0.11 probably_damaging(1) TCGA-N6-A4VF-01 9 32784834 32784834 A G TMEM215 Missense_Mutation p.Y218C 0.21 deleterious(0) probably_damaging(0.998) TCGA-N6-A4VF-01 X 103498922 103498922 C T ESX1 Missense_Mutation p.R140H 0.23 tolerated(0.06) probably_damaging(0.954) TCGA-N6-A4VF-01 X 122599593 122599593 G A GRIA3 Nonsense_Mutation p.W798* 0.30 TCGA-N6-A4VF-01 X 31284961 31284961 C T DMD Intron 0.47 TCGA-N6-A4VG-01 11 55761779 55761779 G A OR5F1 Missense_Mutation p.A108V 0.58 tolerated(0.54) benign(0.317) TCGA-N6-A4VG-01 11 6452620 6452620 C T HPX Missense_Mutation p.D404N 0.83 deleterious(0.03) probably_damaging(0.954) TCGA-N6-A4VG-01 12 109526301 109526301 C G ALKBH2 Missense_Mutation p.D166H 0.10 deleterious(0) probably_damaging(0.981) TCGA-N6-A4VG-01 12 7982369 7982369 A C SLC2A14 Missense_Mutation p.V192G 0.39 deleterious(0) probably_damaging(0.976) TCGA-N6-A4VG-01 13 32335879 32335879 C T RXFP2 Missense_Mutation p.A87V 0.47 tolerated(0.24) benign(0.022) TCGA-N6-A4VG-01 13 39451347 39451347 T C FREM2 Missense_Mutation p.F2880L 0.46 deleterious(0.01) benign(0.112) TCGA-N6-A4VG-01 17 26976153 26976153 C T SDF2 Missense_Mutation p.E164K 0.25 deleterious(0.04) probably_damaging(0.996) TCGA-N6-A4VG-01 17 40847636 40847636 G A CNTNAP1 Silent p.R1030R 0.09 TCGA-N6-A4VG-01 17 56382951 56382951 C T BZRAP1 Missense_Mutation p.A1771T 0.56 deleterious(0.01) probably_damaging(1) TCGA-N6-A4VG-01 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.88 TCGA-N6-A4VG-01 17 7702525 7702525 C T DNAH2 Silent p.I2888I 0.93 TCGA-N6-A4VG-01 19 1828425 1828425 G A REXO1 Silent p.S121S 0.90 TCGA-N6-A4VG-01 19 33696691 33696691 G A LRP3 Missense_Mutation p.A339T 0.18 tolerated(0.34) probably_damaging(0.949) TCGA-N6-A4VG-01 19 41808612 41808612 T G HNRNPUL1 Missense_Mutation p.V577G 0.40 deleterious(0) unknown(0) TCGA-N6-A4VG-01 19 44377285 44377285 C T ZNF404 Missense_Mutation p.G361R 0.55 deleterious(0.01) probably_damaging(1) TCGA-N6-A4VG-01 19 47935656 47935656 C T SLC8A2 Silent p.P719P 0.35 TCGA-N6-A4VG-01 1 110950343 110950343 G T LAMTOR5 Missense_Mutation p.P49Q 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-N6-A4VG-01 1 150480639 150480639 G T ECM1 5'UTR 0.07 TCGA-N6-A4VG-01 1 154987459 154987459 C A ZBTB7B Missense_Mutation p.T142K 0.24 deleterious(0) possibly_damaging(0.731) TCGA-N6-A4VG-01 1 1650881 1650881 C G CDK11A Missense_Mutation p.D81H 0.15 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-N6-A4VG-01 1 1650883 1650883 T C CDK11A Missense_Mutation p.D80G 0.15 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-N6-A4VG-01 1 34192255 34192255 G A CSMD2 Silent p.S760S 0.48 TCGA-N6-A4VG-01 20 22563198 22563198 G A FOXA2 Missense_Mutation p.R228C 0.60 deleterious(0) probably_damaging(1) TCGA-N6-A4VG-01 20 3127481 3127481 G C FASTKD5 Missense_Mutation p.R746G 0.30 deleterious(0.01) probably_damaging(0.962) TCGA-N6-A4VG-01 20 35207242 35207242 G C TGIF2 Missense_Mutation p.R22T 0.29 deleterious(0) possibly_damaging(0.798) TCGA-N6-A4VG-01 20 35862430 35862430 G T RPN2 Missense_Mutation p.R562L 0.10 deleterious(0.01) possibly_damaging(0.737) TCGA-N6-A4VG-01 20 44682317 44682317 G A SLC12A5 Missense_Mutation p.R906H 0.34 deleterious(0.01) benign(0.077) TCGA-N6-A4VG-01 20 61835075 61835075 C - YTHDF1 Frame_Shift_Del p.A73Lfs*108 0.23 TCGA-N6-A4VG-01 20 62598842 62598842 G A ZNF512B Silent p.P52P 0.53 TCGA-N6-A4VG-01 21 10969073 10969073 A T TPTE Splice_Site p.X58_splice 0.16 TCGA-N6-A4VG-01 21 31045468 31045468 T C GRIK1 Silent p.Q187Q 0.30 TCGA-N6-A4VG-01 22 25251535 25251535 G T SGSM1 Missense_Mutation p.S230I 0.08 deleterious(0.03) probably_damaging(0.934) TCGA-N6-A4VG-01 22 42128268 42128268 G A MEI1 Silent p.R372R 0.92 TCGA-N6-A4VG-01 2 152321302 152321302 C T RIF1 Silent p.D1756D 0.20 TCGA-N6-A4VG-01 2 234590591 234590591 G A UGT1A7 Missense_Mutation p.R3H 0.50 tolerated(0.29) benign(0.146) TCGA-N6-A4VG-01 2 242380727 242380727 A C FARP2 Silent p.S389S 0.42 TCGA-N6-A4VG-01 2 89416874 89416874 C A IGKV1-17 Missense_Mutation p.D104Y 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-N6-A4VG-01 3 180688077 180688077 G A FXR1 Missense_Mutation p.D512N 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-N6-A4VG-01 3 40251350 40251350 G A MYRIP Silent p.S557S 0.30 TCGA-N6-A4VG-01 3 44763991 44763991 A - ZNF502 3'UTR 0.20 TCGA-N6-A4VG-01 3 50355733 50355733 C T HYAL2 Missense_Mutation p.D417N 0.09 deleterious(0.05) probably_damaging(0.936) TCGA-N6-A4VG-01 4 129886450 129886450 A T SCLT1 Missense_Mutation p.H267Q 0.33 tolerated(1) benign(0) TCGA-N6-A4VG-01 4 147204390 147204390 G A SLC10A7 Silent p.D267D 0.56 TCGA-N6-A4VG-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.59 deleterious(0) probably_damaging(1) TCGA-N6-A4VG-01 5 130764852 130764852 G T CTC-432M15.3 Missense_Mutation p.P1558H 0.91 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-N6-A4VG-01 5 33658404 33658404 C T ADAMTS12 Missense_Mutation p.E359K 0.14 deleterious(0) probably_damaging(0.986) TCGA-N6-A4VG-01 5 9043072 9043072 A G SEMA5A Silent p.H1054H 0.50 TCGA-N6-A4VG-01 6 106553302 106553302 A C PRDM1 Missense_Mutation p.N423H 0.16 tolerated(0.28) benign(0.016) TCGA-N6-A4VG-01 6 1961068 1961068 C G GMDS Missense_Mutation p.G160R 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-N6-A4VG-01 6 42986290 42986290 G C KLHDC3 Silent p.S243S 0.14 TCGA-N6-A4VG-01 7 124386910 124386910 C T GPR37 Missense_Mutation p.C504Y 0.38 deleterious(0) probably_damaging(1) TCGA-N6-A4VG-01 7 21940750 21940750 G A DNAH11 Missense_Mutation p.E4484K 0.45 benign(0.029) TCGA-N6-A4VG-01 8 124243797 124243797 C T C8orf76 Silent p.A186A 0.12 TCGA-N6-A4VG-01 8 128753004 128753004 T C MYC Missense_Mutation p.F389L 0.48 deleterious(0) probably_damaging(0.99) TCGA-N6-A4VG-01 8 86193464 86193464 C G CA13 Silent p.A225A 0.06 TCGA-N6-A4VG-01 9 123628012 123628012 G T PHF19 Missense_Mutation p.H292Q 0.27 deleterious(0.01) possibly_damaging(0.467) TCGA-N6-A4VG-01 9 87635192 87635192 G A NTRK2 Silent p.T748T 0.36 TCGA-N6-A4VG-01 X 52677447 52677447 C G SSX7 Splice_Site p.X111_splice 0.66 TCGA-N6-A4VG-01 X 70621556 70621556 C A TAF1 Missense_Mutation p.T1342N 0.66 deleterious(0.01) probably_damaging(0.999) TCGA-N7-A4Y0-01 10 101163312 101163312 G A GOT1 Silent p.I291I 0.59 TCGA-N7-A4Y0-01 10 102672744 102672744 A G FAM178A 5'UTR 0.60 TCGA-N7-A4Y0-01 10 104241927 104241927 A G ACTR1A Silent p.G252G 0.25 TCGA-N7-A4Y0-01 10 104262459 104262459 G A ACTR1A 5'UTR 0.17 TCGA-N7-A4Y0-01 10 105957717 105957717 G A WDR96 Missense_Mutation p.A392V 0.56 deleterious(0.02) probably_damaging(0.944) TCGA-N7-A4Y0-01 10 105965735 105965735 G T WDR96 Missense_Mutation p.L317M 0.74 tolerated(0.07) possibly_damaging(0.73) TCGA-N7-A4Y0-01 10 106121801 106121801 G T CCDC147 Missense_Mutation p.K104N 0.61 deleterious(0) probably_damaging(0.991) TCGA-N7-A4Y0-01 10 106976790 106976790 G - SORCS3 Frame_Shift_Del p.V882Cfs*10 0.24 TCGA-N7-A4Y0-01 10 107023205 107023205 A - SORCS3 3'UTR 0.15 TCGA-N7-A4Y0-01 10 112837856 112837856 G - ADRA2A Frame_Shift_Del p.G36Afs*12 0.33 TCGA-N7-A4Y0-01 10 114900983 114900984 - C TCF7L2 Frame_Shift_Ins p.L200Pfs*10 0.26 TCGA-N7-A4Y0-01 10 115348178 115348178 C T HABP2 3'UTR 0.59 TCGA-N7-A4Y0-01 10 115410306 115410306 T C NRAP Splice_Site p.X226_splice 0.32 TCGA-N7-A4Y0-01 10 12214859 12214859 C T NUDT5 Missense_Mutation p.C131Y 0.40 deleterious(0.02) probably_damaging(0.941) TCGA-N7-A4Y0-01 10 123279677 123279677 G C FGFR2 Missense_Mutation p.S252W 0.31 deleterious(0.01) probably_damaging(0.973) TCGA-N7-A4Y0-01 10 123325123 123325123 C T FGFR2 Missense_Mutation p.V69M 0.33 tolerated(0.15) benign(0.002) TCGA-N7-A4Y0-01 10 126311887 126311887 C A FAM53B Missense_Mutation p.R398L 0.59 deleterious(0.01) benign(0.007) TCGA-N7-A4Y0-01 10 126312029 126312029 C T FAM53B Missense_Mutation p.A351T 0.19 tolerated(0.09) benign(0.387) TCGA-N7-A4Y0-01 10 126694501 126694501 C T CTBP2 Intron 0.38 TCGA-N7-A4Y0-01 10 133958682 133958682 G A JAKMIP3 Silent p.A558A 0.27 TCGA-N7-A4Y0-01 10 134218255 134218255 C - PWWP2B Frame_Shift_Del p.P86Lfs*100 0.10 TCGA-N7-A4Y0-01 10 134941910 134941910 A G GPR123 Missense_Mutation p.Y193C 0.48 deleterious(0) probably_damaging(0.996) TCGA-N7-A4Y0-01 10 17126304 17126304 T C CUBN Missense_Mutation p.Q756R 0.48 deleterious(0) benign(0.102) TCGA-N7-A4Y0-01 10 18787305 18787305 G A CACNB2 Missense_Mutation p.V119I 0.38 tolerated(0.06) probably_damaging(0.989) TCGA-N7-A4Y0-01 10 24831988 24831988 G A KIAA1217 Silent p.V1263V 0.57 TCGA-N7-A4Y0-01 10 24832391 24832391 G - KIAA1217 Frame_Shift_Del p.E1399Rfs*24 0.31 TCGA-N7-A4Y0-01 10 24874838 24874838 T - ARHGAP21 Frame_Shift_Del p.E1461Kfs*33 0.31 TCGA-N7-A4Y0-01 10 25464418 25464418 C T GPR158 Silent p.G23G 0.27 TCGA-N7-A4Y0-01 10 25861746 25861746 G - GPR158 Frame_Shift_Del p.T564Hfs*18 0.28 TCGA-N7-A4Y0-01 10 26436415 26436415 C T MYO3A Silent p.D854D 0.32 TCGA-N7-A4Y0-01 10 27494154 27494154 C T ACBD5 Silent p.L476L 0.34 TCGA-N7-A4Y0-01 10 29812587 29812587 C A SVIL Missense_Mutation p.D986Y 0.39 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-N7-A4Y0-01 10 29822253 29822253 G A SVIL Missense_Mutation p.A348V 0.54 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-N7-A4Y0-01 10 38651194 38651194 T C HSD17B7P2 RNA 0.32 TCGA-N7-A4Y0-01 10 45499133 45499133 C T ZNF22 Missense_Mutation p.T106M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-N7-A4Y0-01 10 51069693 51069693 T C PARG Missense_Mutation p.T231A 0.50 tolerated(0.14) possibly_damaging(0.877) TCGA-N7-A4Y0-01 10 5204938 5204938 C T AKR1CL1 Missense_Mutation p.V47I 0.45 tolerated(0.12) benign(0.055) TCGA-N7-A4Y0-01 10 5494824 5494824 A G NET1 Missense_Mutation p.I179V 0.10 deleterious(0.02) possibly_damaging(0.573) TCGA-N7-A4Y0-01 10 55581598 55581600 CTA TT PCDH15 3'UTR 0.20 TCGA-N7-A4Y0-01 10 6139070 6139070 A - RBM17 Frame_Shift_Del p.T16Qfs*17 0.25 TCGA-N7-A4Y0-01 10 61832912 61832912 C A ANK3 Missense_Mutation p.R2576M 0.26 probably_damaging(0.984) TCGA-N7-A4Y0-01 10 63995969 63995969 G A RTKN2 Missense_Mutation p.T181I 0.28 tolerated(0.22) benign(0.021) TCGA-N7-A4Y0-01 10 68686815 68686815 T C LRRTM3 Silent p.C47C 0.22 TCGA-N7-A4Y0-01 10 70706511 70706512 - T DDX50 3'UTR 0.18 TCGA-N7-A4Y0-01 10 73511467 73511467 G - C10orf54 Frame_Shift_Del p.L286Cfs*51 0.28 TCGA-N7-A4Y0-01 10 73856994 73856994 T C ASCC1 3'UTR 0.36 TCGA-N7-A4Y0-01 10 75393728 75393728 T - MYOZ1 Frame_Shift_Del p.M200Wfs*39 0.28 TCGA-N7-A4Y0-01 10 75550867 75550867 A G ZSWIM8 Missense_Mutation p.K359R 0.24 tolerated(0.51) probably_damaging(0.979) TCGA-N7-A4Y0-01 10 79552204 79552204 C T DLG5 Silent p.P1918P 0.31 TCGA-N7-A4Y0-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.36 TCGA-N7-A4Y0-01 10 89692910 89692910 G A PTEN Missense_Mutation p.G132S 0.60 deleterious(0) probably_damaging(0.994) TCGA-N7-A4Y0-01 10 89717674 89717675 - C PTEN Frame_Shift_Ins p.R234Pfs*9 0.24 TCGA-N7-A4Y0-01 10 91163163 91163163 G A IFIT1 Missense_Mutation p.M377I 0.64 tolerated(0.08) benign(0.01) TCGA-N7-A4Y0-01 10 93221892 93221892 G T HECTD2 Missense_Mutation p.G184V 0.20 deleterious(0.02) possibly_damaging(0.544) TCGA-N7-A4Y0-01 10 94408154 94408154 C T KIF11 Silent p.C911C 0.24 TCGA-N7-A4Y0-01 10 95661270 95661270 T - SLC35G1 3'UTR 0.48 TCGA-N7-A4Y0-01 10 96162514 96162514 G A TBC1D12 Silent p.P48P 0.31 TCGA-N7-A4Y0-01 10 97951722 97951722 T C BLNK 3'UTR 0.60 TCGA-N7-A4Y0-01 11 108165727 108165727 T G ATM Missense_Mutation p.L1617R 0.39 deleterious(0) probably_damaging(0.921) TCGA-N7-A4Y0-01 11 10825100 10825100 A G EIF4G2 Missense_Mutation p.M247T 0.34 tolerated(0.46) benign(0.412) TCGA-N7-A4Y0-01 11 108332220 108332220 A G C11orf65 Missense_Mutation p.W23R 0.42 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 11 113660947 113660947 C T ATF4P4 RNA 0.31 TCGA-N7-A4Y0-01 11 116661100 116661100 C T APOA5 Missense_Mutation p.R282H 0.39 deleterious(0.05) benign(0.046) TCGA-N7-A4Y0-01 11 117779388 117779388 G A TMPRSS13 Silent p.T407T 0.71 TCGA-N7-A4Y0-01 11 119044561 119044561 C T NLRX1 Silent p.D201D 0.36 TCGA-N7-A4Y0-01 11 120097673 120097673 G A OAF Missense_Mutation p.R172H 0.47 deleterious(0.02) probably_damaging(0.995) TCGA-N7-A4Y0-01 11 120983885 120983885 C - TECTA Frame_Shift_Del p.L199* 0.35 TCGA-N7-A4Y0-01 11 12246317 12246317 C T MICAL2 Silent p.R546R 0.56 TCGA-N7-A4Y0-01 11 125453541 125453541 C T EI24 Missense_Mutation p.P328L 0.60 deleterious_low_confidence(0.02) benign(0.034) TCGA-N7-A4Y0-01 11 1265997 1265997 G A MUC5B Silent p.T2629T 0.42 TCGA-N7-A4Y0-01 11 1269170 1269170 C T MUC5B Missense_Mutation p.P3687L 0.43 unknown(0) TCGA-N7-A4Y0-01 11 128843210 128843210 G A ARHGAP32 Missense_Mutation p.S1050F 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 11 132306088 132306088 G A OPCML Missense_Mutation p.R277C 0.32 tolerated(0.1) possibly_damaging(0.717) TCGA-N7-A4Y0-01 11 18301454 18301454 C T HPS5 Missense_Mutation p.R1122Q 0.36 deleterious(0.05) benign(0.441) TCGA-N7-A4Y0-01 11 19255993 19255993 G A E2F8 Missense_Mutation p.T281M 0.43 deleterious(0) probably_damaging(0.986) TCGA-N7-A4Y0-01 11 209143 209143 C T RIC8A Intron 0.42 TCGA-N7-A4Y0-01 11 214328 214328 A G RIC8A Missense_Mutation p.D531G 0.29 tolerated(0.05) unknown(0) TCGA-N7-A4Y0-01 11 27406980 27406980 T C LGR4 Missense_Mutation p.E146G 0.44 tolerated(0.09) benign(0.375) TCGA-N7-A4Y0-01 11 2950201 2950201 C T PHLDA2 Missense_Mutation p.A132T 0.58 tolerated(0.8) unknown(0) TCGA-N7-A4Y0-01 11 30354531 30354531 G A ARL14EP Missense_Mutation p.G182D 0.42 tolerated(0.61) benign(0.003) TCGA-N7-A4Y0-01 11 33581397 33581397 C T KIAA1549L Nonsense_Mutation p.Q1023* 0.37 TCGA-N7-A4Y0-01 11 34668216 34668216 C T EHF Missense_Mutation p.H132Y 0.41 deleterious(0.01) possibly_damaging(0.749) TCGA-N7-A4Y0-01 11 45924624 45924624 C T MAPK8IP1 Missense_Mutation p.R436W 0.35 deleterious(0.01) possibly_damaging(0.65) TCGA-N7-A4Y0-01 11 46667538 46667538 A G ATG13 Missense_Mutation p.E90G 0.41 deleterious(0.02) benign(0.233) TCGA-N7-A4Y0-01 11 46724534 46724534 C T ZNF408 Silent p.S131S 0.44 TCGA-N7-A4Y0-01 11 46912011 46912011 G - LRP4 Frame_Shift_Del p.R578Vfs*233 0.27 TCGA-N7-A4Y0-01 11 47200457 47200457 G - PACSIN3 Frame_Shift_Del p.P342Rfs*27 0.27 TCGA-N7-A4Y0-01 11 47436291 47436291 G A SLC39A13 Intron 0.35 TCGA-N7-A4Y0-01 11 4928979 4928979 A G OR51A7 Missense_Mutation p.H127R 0.42 tolerated(0.4) benign(0.002) TCGA-N7-A4Y0-01 11 55432816 55432816 T - OR4C6 Frame_Shift_Del p.T62Pfs*18 0.34 TCGA-N7-A4Y0-01 11 55890694 55890694 T C OR8H3 Silent p.I282I 0.40 TCGA-N7-A4Y0-01 11 563280 563280 C A RASSF7 Missense_Mutation p.P305Q 0.33 tolerated(0.06) benign(0.371) TCGA-N7-A4Y0-01 11 59523030 59523030 C A STX3 5'UTR 0.47 TCGA-N7-A4Y0-01 11 62297595 62297595 C T AHNAK Missense_Mutation p.A1432T 0.38 benign(0.064) TCGA-N7-A4Y0-01 11 6238902 6238902 C T FAM160A2 Silent p.V652V 0.34 TCGA-N7-A4Y0-01 11 63884829 63884829 C T FLRT1 Missense_Mutation p.R364W 0.45 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 11 6478961 6478961 C T TRIM3 Silent p.A160A 0.38 TCGA-N7-A4Y0-01 11 6503065 6503065 G T TIMM10B Missense_Mutation p.A40S 0.39 tolerated(0.81) benign(0.02) TCGA-N7-A4Y0-01 11 65351790 65351790 C T EHBP1L1 Missense_Mutation p.R1058C 0.42 tolerated(0.15) benign(0.038) TCGA-N7-A4Y0-01 11 65402797 65402797 C T PCNXL3 Missense_Mutation p.R1688C 0.60 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 11 65486479 65486479 G A RNASEH2C 3'UTR 0.37 TCGA-N7-A4Y0-01 11 66114163 66114163 C A B3GNT1 Missense_Mutation p.R285L 0.46 deleterious(0) possibly_damaging(0.758) TCGA-N7-A4Y0-01 11 66241352 66241352 T C PELI3 Missense_Mutation p.Y266H 0.07 deleterious(0) possibly_damaging(0.876) TCGA-N7-A4Y0-01 11 66298469 66298469 G A BBS1 Silent p.A526A 0.41 TCGA-N7-A4Y0-01 11 67261432 67261432 G A PITPNM1 Missense_Mutation p.A990V 0.55 tolerated(0.05) benign(0.001) TCGA-N7-A4Y0-01 11 67790205 67790205 G A ALDH3B1 Silent p.L362L 0.50 TCGA-N7-A4Y0-01 11 69466022 69466022 C T CCND1 Missense_Mutation p.P287L 0.46 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 11 71948748 71948748 C - INPPL1 Frame_Shift_Del p.R1156Gfs*46 0.30 TCGA-N7-A4Y0-01 11 73681322 73681322 C A DNAJB13 3'UTR 0.53 TCGA-N7-A4Y0-01 11 74547475 74547475 C G RNF169 Missense_Mutation p.S609R 0.34 tolerated(0.13) benign(0.209) TCGA-N7-A4Y0-01 11 74554923 74554923 G - XRRA1 Frame_Shift_Del p.R701Gfs*8 0.31 TCGA-N7-A4Y0-01 11 8190572 8190572 C T RIC3 5'Flank 0.45 TCGA-N7-A4Y0-01 11 8720914 8720914 G A ST5 Missense_Mutation p.A915V 0.57 deleterious(0.01) probably_damaging(0.985) TCGA-N7-A4Y0-01 11 88386450 88386450 G A GRM5 Missense_Mutation p.R345W 0.49 deleterious(0) possibly_damaging(0.87) TCGA-N7-A4Y0-01 11 92624210 92624210 C T FAT3 Silent p.S4567S 0.33 TCGA-N7-A4Y0-01 11 9452491 9452491 G A IPO7 Missense_Mutation p.A608T 0.46 deleterious(0) probably_damaging(0.927) TCGA-N7-A4Y0-01 11 95552024 95552026 GAA - CEP57 In_Frame_Del p.E221del 0.44 TCGA-N7-A4Y0-01 12 100709497 100709497 G A SCYL2 Silent p.Q419Q 0.46 TCGA-N7-A4Y0-01 12 101437381 101437381 A G ANO4 Missense_Mutation p.M372V 0.30 deleterious(0.01) benign(0.062) TCGA-N7-A4Y0-01 12 101768587 101768587 G A UTP20 Missense_Mutation p.R2378H 0.30 tolerated(0.11) benign(0.001) TCGA-N7-A4Y0-01 12 102468812 102468812 G A NUP37 Silent p.S278S 0.45 TCGA-N7-A4Y0-01 12 105282851 105282851 A G SLC41A2 Silent p.S280S 0.44 TCGA-N7-A4Y0-01 12 112621993 112621993 C T HECTD4 Missense_Mutation p.E3447K 0.42 probably_damaging(0.917) TCGA-N7-A4Y0-01 12 118454616 118454616 A G RFC5 5'UTR 0.37 TCGA-N7-A4Y0-01 12 118463610 118463610 C T RFC5 Missense_Mutation p.R214C 0.41 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 12 118814517 118814522 GGCCCC - SUDS3 In_Frame_Del p.P11_A12del 0.36 TCGA-N7-A4Y0-01 12 119592107 119592107 G A SRRM4 Missense_Mutation p.R484H 0.29 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-N7-A4Y0-01 12 120190012 120190012 C T CIT Missense_Mutation p.R916H 0.53 tolerated(0.08) probably_damaging(0.991) TCGA-N7-A4Y0-01 12 120654670 120654670 G A PXN Intron 0.54 TCGA-N7-A4Y0-01 12 120878307 120878307 G A COX6A1 Silent p.V99V 0.39 TCGA-N7-A4Y0-01 12 121441903 121441903 G - C12orf43 3'UTR 0.31 TCGA-N7-A4Y0-01 12 12334194 12334194 G A LRP6 Missense_Mutation p.R386C 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-N7-A4Y0-01 12 124228411 124228411 A G ATP6V0A2 Missense_Mutation p.N373S 0.08 deleterious(0.01) possibly_damaging(0.462) TCGA-N7-A4Y0-01 12 124418011 124418011 T C DNAH10 Missense_Mutation p.V4359A 0.50 probably_damaging(0.932) TCGA-N7-A4Y0-01 12 124848228 124848228 G - NCOR2 Frame_Shift_Del p.I976Sfs*87 0.36 TCGA-N7-A4Y0-01 12 125397363 125397363 G A UBC Missense_Mutation p.L319F 0.26 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 12 125450264 125450265 - C DHX37 Frame_Shift_Ins p.A562Gfs*19 0.30 TCGA-N7-A4Y0-01 12 13061187 13061187 G A GPRC5A Missense_Mutation p.A2T 0.47 tolerated(0.83) benign(0.001) TCGA-N7-A4Y0-01 12 130926863 130926863 G A RIMBP2 Missense_Mutation p.T328M 0.44 deleterious(0.04) benign(0.042) TCGA-N7-A4Y0-01 12 133196264 133196264 G - P2RX2 Splice_Site p.X105_splice 0.32 TCGA-N7-A4Y0-01 12 1748922 1748922 G A WNT5B Missense_Mutation p.R134H 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-N7-A4Y0-01 12 18499635 18499635 A G PIK3C2G Missense_Mutation p.Y497C 0.34 deleterious(0) probably_damaging(0.954) TCGA-N7-A4Y0-01 12 19427544 19427545 - A PLEKHA5 Frame_Shift_Ins p.N316Kfs*8 0.45 TCGA-N7-A4Y0-01 12 20864412 20864412 T C SLCO1C1 Missense_Mutation p.V166A 0.37 tolerated(0.55) benign(0.008) TCGA-N7-A4Y0-01 12 2614074 2614074 T - CACNA1C Frame_Shift_Del p.F395Lfs*36 0.36 TCGA-N7-A4Y0-01 12 39745622 39745623 - T KIF21A Frame_Shift_Ins p.D544Rfs*20 0.42 TCGA-N7-A4Y0-01 12 44139886 44139886 A G PUS7L Missense_Mutation p.L409P 0.25 deleterious(0.02) probably_damaging(0.92) TCGA-N7-A4Y0-01 12 45568424 45568424 C A PLEKHA8P1 Intron 0.51 TCGA-N7-A4Y0-01 12 48181527 48181527 G - HDAC7 Frame_Shift_Del p.M808Wfs*12 0.38 TCGA-N7-A4Y0-01 12 49176478 49176478 T C ADCY6 Missense_Mutation p.Y247C 0.28 deleterious(0) probably_damaging(0.979) TCGA-N7-A4Y0-01 12 4920822 4920822 G - KCNA6 3'UTR 0.28 TCGA-N7-A4Y0-01 12 49392006 49392006 C T DDN Missense_Mutation p.R218Q 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-N7-A4Y0-01 12 49421827 49421827 C T KMT2D Missense_Mutation p.G4827D 0.43 unknown(0) TCGA-N7-A4Y0-01 12 49440431 49440431 G - KMT2D Frame_Shift_Del p.P1460Hfs*46 0.30 TCGA-N7-A4Y0-01 12 52200125 52200125 A G SCN8A Missense_Mutation p.I1619V 0.43 tolerated(0.05) benign(0.401) TCGA-N7-A4Y0-01 12 52451181 52451181 G A NR4A1 Silent p.V482V 0.38 TCGA-N7-A4Y0-01 12 53162616 53162616 A T KRT76 Missense_Mutation p.S600T 0.33 tolerated_low_confidence(0.22) unknown(0) TCGA-N7-A4Y0-01 12 53202570 53202570 C T KRT4 Missense_Mutation p.R300H 0.39 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 12 56600292 56600293 - C RNF41 Frame_Shift_Ins p.D298Gfs*2 0.38 TCGA-N7-A4Y0-01 12 58139606 58139606 G A TSPAN31 Missense_Mutation p.G48R 0.25 deleterious(0.01) probably_damaging(1) TCGA-N7-A4Y0-01 12 6703716 6703716 C T CHD4 Nonsense_Mutation p.W741* 0.43 TCGA-N7-A4Y0-01 12 68724964 68724964 T - MDM1 Frame_Shift_Del p.K19Sfs*26 0.33 TCGA-N7-A4Y0-01 12 7090985 7090985 A T LPCAT3 Silent p.T149T 0.05 TCGA-N7-A4Y0-01 12 72666576 72666576 C T TRHDE Silent p.A6A 0.50 TCGA-N7-A4Y0-01 12 7301617 7301617 G A CLSTN3 Missense_Mutation p.V633M 0.35 deleterious(0) possibly_damaging(0.803) TCGA-N7-A4Y0-01 12 81102659 81102659 C T MYF6 Nonsense_Mutation p.R217* 0.53 TCGA-N7-A4Y0-01 12 99145154 99145154 G A ANKS1B Silent p.R1217R 0.34 TCGA-N7-A4Y0-01 13 111117897 111117897 C A COL4A2 Missense_Mutation p.P641H 0.51 possibly_damaging(0.857) TCGA-N7-A4Y0-01 13 113729502 113729502 C T MCF2L Missense_Mutation p.T436M 0.44 deleterious(0.05) benign(0.017) TCGA-N7-A4Y0-01 13 23914022 23914022 A G SACS Silent p.H1331H 0.49 TCGA-N7-A4Y0-01 13 23915781 23915781 C T SACS Missense_Mutation p.R745H 0.38 probably_damaging(0.994) TCGA-N7-A4Y0-01 13 24860369 24860369 C T SPATA13 Silent p.N773N 0.41 TCGA-N7-A4Y0-01 13 26116151 26116151 A G ATP8A2 Missense_Mutation p.D249G 0.46 tolerated(0.05) benign(0.281) TCGA-N7-A4Y0-01 13 32351561 32351561 G A RXFP2 Silent p.T230T 0.30 TCGA-N7-A4Y0-01 13 35624439 35624439 T A NBEA Silent p.A293A 0.47 TCGA-N7-A4Y0-01 13 38144790 38144790 T - POSTN Frame_Shift_Del p.K732Nfs*13 0.34 TCGA-N7-A4Y0-01 13 45148705 45148705 T C TSC22D1 Silent p.Q502Q 0.33 TCGA-N7-A4Y0-01 13 46543691 46543691 T - ZC3H13 Frame_Shift_Del p.G997Dfs*40 0.14 TCGA-N7-A4Y0-01 13 52365373 52365373 C A DHRS12 Silent p.V98V 0.26 TCGA-N7-A4Y0-01 13 52439515 52439515 A G CCDC70 Translation_Start_Site p.M1? 0.58 tolerated_low_confidence(0.09) benign(0.025) TCGA-N7-A4Y0-01 13 52676360 52676360 C T NEK5 Silent p.P226P 0.42 TCGA-N7-A4Y0-01 13 77844149 77844149 T - MYCBP2 Frame_Shift_Del p.K375Sfs*4 0.30 TCGA-N7-A4Y0-01 14 101004877 101004877 G A BEGAIN Missense_Mutation p.P404L 0.53 tolerated(0.08) benign(0.422) TCGA-N7-A4Y0-01 14 101442876 101442876 C G SNORD114-19 RNA 0.38 TCGA-N7-A4Y0-01 14 102506038 102506038 C T DYNC1H1 Silent p.L3887L 0.45 TCGA-N7-A4Y0-01 14 102699102 102699102 G A MOK Intron 0.56 TCGA-N7-A4Y0-01 14 103447224 103447224 A - CDC42BPB Frame_Shift_Del p.F342Lfs*4 0.33 TCGA-N7-A4Y0-01 14 103465909 103465909 C T CDC42BPB Missense_Mutation p.V197M 0.33 deleterious(0) possibly_damaging(0.83) TCGA-N7-A4Y0-01 14 104642560 104642560 C - KIF26A Frame_Shift_Del p.P1147Lfs*101 0.39 TCGA-N7-A4Y0-01 14 105518408 105518408 C T GPR132 Silent p.P22P 0.49 TCGA-N7-A4Y0-01 14 105643364 105643364 G A NUDT14 Silent p.S42S 0.42 TCGA-N7-A4Y0-01 14 20502375 20502375 A - OR4K13 Frame_Shift_Del p.V184* 0.25 TCGA-N7-A4Y0-01 14 20502395 20502395 C A OR4K13 Missense_Mutation p.D175Y 0.39 deleterious(0) probably_damaging(0.996) TCGA-N7-A4Y0-01 14 22539003 22539003 C T TRAV22 Silent p.C17C 0.29 TCGA-N7-A4Y0-01 14 23495175 23495175 A - PSMB5 3'UTR 0.35 TCGA-N7-A4Y0-01 14 23887559 23887559 C T MYH7 Silent p.L1343L 0.40 TCGA-N7-A4Y0-01 14 24033540 24033540 A G AP1G2 Splice_Site p.X326_splice 0.41 TCGA-N7-A4Y0-01 14 24734837 24734837 C T RABGGTA Missense_Mutation p.S563N 0.60 tolerated(0.48) benign(0) TCGA-N7-A4Y0-01 14 24884026 24884026 C T NYNRIN Missense_Mutation p.A1024V 0.47 tolerated_low_confidence(0.19) benign(0.01) TCGA-N7-A4Y0-01 14 29237048 29237048 C T FOXG1 Missense_Mutation p.A188V 0.35 deleterious(0.03) probably_damaging(1) TCGA-N7-A4Y0-01 14 36987157 36987157 C - NKX2-1 Frame_Shift_Del p.D178Tfs*2 0.27 TCGA-N7-A4Y0-01 14 60194232 60194232 G A RTN1 Silent p.S390S 0.38 TCGA-N7-A4Y0-01 14 62207260 62207260 G T HIF1A Missense_Mutation p.S549I 0.46 deleterious(0.01) benign(0.052) TCGA-N7-A4Y0-01 14 62242911 62242911 T - SNAPC1 Frame_Shift_Del p.F213Lfs*7 0.31 TCGA-N7-A4Y0-01 14 64988802 64988802 A - ZBTB1 Frame_Shift_Del p.S196Vfs*36 0.35 TCGA-N7-A4Y0-01 14 68215288 68215288 T C ZFYVE26 Silent p.S2495S 0.39 TCGA-N7-A4Y0-01 14 69925096 69925096 T A SLC39A9 Missense_Mutation p.L237H 0.51 deleterious(0) benign(0.178) TCGA-N7-A4Y0-01 14 70235387 70235387 G A SRSF5 Missense_Mutation p.E65K 0.41 deleterious(0.02) possibly_damaging(0.845) TCGA-N7-A4Y0-01 14 73577560 73577560 C T RBM25 Missense_Mutation p.R572C 0.27 possibly_damaging(0.689) TCGA-N7-A4Y0-01 14 73637521 73637521 G A PSEN1 Missense_Mutation p.R35Q 0.23 tolerated(0.57) benign(0.001) TCGA-N7-A4Y0-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.33 TCGA-N7-A4Y0-01 14 75248388 75248388 C - YLPM1 Frame_Shift_Del p.P549Lfs*98 0.11 TCGA-N7-A4Y0-01 14 75388084 75388084 G A RPS6KL1 Missense_Mutation p.A54V 0.36 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 14 77920439 77920439 G A VIPAS39 Missense_Mutation p.R3W 0.50 deleterious_low_confidence(0.03) probably_damaging(0.924) TCGA-N7-A4Y0-01 14 92604647 92604647 C T CPSF2 Missense_Mutation p.T206I 0.05 tolerated(0.2) benign(0.148) TCGA-N7-A4Y0-01 14 99876403 99876403 G A SETD3 Intron 0.61 TCGA-N7-A4Y0-01 15 22382751 22382751 C A OR4N4 Silent p.S93S 0.41 TCGA-N7-A4Y0-01 15 23889906 23889906 T C MAGEL2 Missense_Mutation p.E392G 0.55 tolerated(0.07) possibly_damaging(0.722) TCGA-N7-A4Y0-01 15 25310193 25310193 A - SNORD116-6 RNA 0.36 TCGA-N7-A4Y0-01 15 28387443 28387443 A G HERC2 Missense_Mutation p.S3881P 0.39 possibly_damaging(0.658) TCGA-N7-A4Y0-01 15 32916446 32916446 T - ARHGAP11A Frame_Shift_Del p.F125Lfs*18 0.53 TCGA-N7-A4Y0-01 15 34546772 34546772 C A SLC12A6 Missense_Mutation p.A299S 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-N7-A4Y0-01 15 35530093 35530093 G C ANP32AP1 RNA 0.53 TCGA-N7-A4Y0-01 15 38795505 38795505 T - RASGRP1 Frame_Shift_Del p.T466Pfs*43 0.35 TCGA-N7-A4Y0-01 15 40502378 40502378 G A BUB1B Silent p.A784A 0.49 TCGA-N7-A4Y0-01 15 40861959 40861959 G T RPUSD2 Missense_Mutation p.K141N 0.14 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 15 41099853 41099853 C G ZFYVE19 Silent p.S22S 0.41 TCGA-N7-A4Y0-01 15 42162110 42162110 G A SPTBN5 Silent p.L1928L 0.60 TCGA-N7-A4Y0-01 15 43873201 43873201 C T PPIP5K1 Missense_Mutation p.G354R 0.50 tolerated(0.15) probably_damaging(0.952) TCGA-N7-A4Y0-01 15 50152666 50152666 G T ATP8B4 Silent p.R1102R 0.39 TCGA-N7-A4Y0-01 15 52905907 52905907 A T FAM214A Missense_Mutation p.V55E 0.39 tolerated(1) benign(0.365) TCGA-N7-A4Y0-01 15 54625988 54625988 T C UNC13C Silent p.T1506T 0.33 TCGA-N7-A4Y0-01 15 56970921 56970921 G T ZNF280D Missense_Mutation p.P368H 0.40 deleterious(0) probably_damaging(0.912) TCGA-N7-A4Y0-01 15 60747588 60747588 C A NARG2 Missense_Mutation p.Q240H 0.48 tolerated(0.08) benign(0.007) TCGA-N7-A4Y0-01 15 62174867 62174868 - A VPS13C Frame_Shift_Ins p.L3184Ffs*7 0.36 TCGA-N7-A4Y0-01 15 62201259 62201259 G A VPS13C Silent p.Y2970Y 0.41 TCGA-N7-A4Y0-01 15 63829242 63829242 A - USP3 Frame_Shift_Del p.K59Nfs*10 0.27 TCGA-N7-A4Y0-01 15 65110488 65110488 C A PIF1 Missense_Mutation p.G499V 0.32 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 15 65312544 65312544 C - MTFMT Frame_Shift_Del p.A238Rfs*14 0.31 TCGA-N7-A4Y0-01 15 66170108 66170108 G A RAB11A Missense_Mutation p.R82H 0.26 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-N7-A4Y0-01 15 68486389 68486389 A - CALML4 Frame_Shift_Del p.F185Lfs*24 0.40 TCGA-N7-A4Y0-01 15 70959372 70959372 T - UACA Frame_Shift_Del p.K1217Nfs*2 0.27 TCGA-N7-A4Y0-01 15 74425609 74425609 G A ISLR2 Missense_Mutation p.A172T 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-N7-A4Y0-01 15 75042527 75042527 G A CYP1A2 Missense_Mutation p.A150T 0.39 tolerated(0.11) possibly_damaging(0.895) TCGA-N7-A4Y0-01 15 75498963 75498963 C T C15orf39 Missense_Mutation p.R192W 0.44 deleterious(0.02) possibly_damaging(0.835) TCGA-N7-A4Y0-01 15 76072999 76072999 T C RN7SL319P 5'Flank 0.55 TCGA-N7-A4Y0-01 15 79058095 79058095 G A ADAMTS7 Silent p.H1386H 0.39 TCGA-N7-A4Y0-01 15 80137473 80137473 T - MTHFS 3'UTR 0.27 TCGA-N7-A4Y0-01 15 85383002 85383002 A G ALPK3 Silent p.S366S 0.40 TCGA-N7-A4Y0-01 15 86312497 86312497 C T KLHL25 Missense_Mutation p.S182N 0.46 tolerated(0.71) benign(0.174) TCGA-N7-A4Y0-01 16 10863050 10863050 G A NUBP1 3'UTR 0.39 TCGA-N7-A4Y0-01 16 14355246 14355246 G A MKL2 Missense_Mutation p.S1032N 0.44 deleterious(0.03) possibly_damaging(0.742) TCGA-N7-A4Y0-01 16 17228506 17228506 G A XYLT1 Silent p.Y617Y 0.43 TCGA-N7-A4Y0-01 16 1891830 1891830 C T MEIOB Missense_Mutation p.R342Q 0.50 tolerated(0.05) possibly_damaging(0.739) TCGA-N7-A4Y0-01 16 19710892 19710894 CAA - C16orf62 In_Frame_Del p.N996del 0.42 TCGA-N7-A4Y0-01 16 2030447 2030447 G A NOXO1 Missense_Mutation p.R113C 0.40 deleterious(0) probably_damaging(0.947) TCGA-N7-A4Y0-01 16 20335435 20335435 C T GP2 Missense_Mutation p.A80T 0.45 tolerated(0.43) benign(0.004) TCGA-N7-A4Y0-01 16 20974801 20974801 C A DNAH3 Nonsense_Mutation p.G3469* 0.38 TCGA-N7-A4Y0-01 16 2160364 2160364 G A PKD1 Missense_Mutation p.R1602C 0.44 probably_damaging(0.998) TCGA-N7-A4Y0-01 16 2163181 2163181 G A PKD1 Missense_Mutation p.A989V 0.46 possibly_damaging(0.842) TCGA-N7-A4Y0-01 16 2282537 2282537 C T E4F1 Silent p.R230R 0.28 TCGA-N7-A4Y0-01 16 23711986 23711986 G - ERN2 Frame_Shift_Del p.L515Wfs*48 0.34 TCGA-N7-A4Y0-01 16 2511156 2511156 T G C16orf59 Missense_Mutation p.L179R 0.37 tolerated(0.11) probably_damaging(0.925) TCGA-N7-A4Y0-01 16 2522735 2522735 G A NTN3 Missense_Mutation p.R321H 0.41 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 16 27475772 27475772 G - GTF3C1 Frame_Shift_Del p.P1914Qfs*30 0.32 TCGA-N7-A4Y0-01 16 27475972 27475972 G - GTF3C1 Frame_Shift_Del p.E1848Rfs*33 0.33 TCGA-N7-A4Y0-01 16 29912571 29912571 G A ASPHD1 Nonsense_Mutation p.W93* 0.40 TCGA-N7-A4Y0-01 16 3016379 3016379 G A KREMEN2 Missense_Mutation p.G139S 0.38 deleterious(0) probably_damaging(0.982) TCGA-N7-A4Y0-01 16 30364763 30364763 G - CD2BP2 Frame_Shift_Del p.P245Hfs*37 0.29 TCGA-N7-A4Y0-01 16 30535778 30535778 C A ZNF768 3'UTR 0.35 TCGA-N7-A4Y0-01 16 30594122 30594122 A G ZNF785 Missense_Mutation p.L326P 0.40 tolerated(0.25) possibly_damaging(0.902) TCGA-N7-A4Y0-01 16 31382762 31382762 T C ITGAX Missense_Mutation p.V650A 0.52 tolerated(0.19) benign(0) TCGA-N7-A4Y0-01 16 4848176 4848176 C T ROGDI Missense_Mutation p.A181T 0.24 tolerated(1) benign(0.009) TCGA-N7-A4Y0-01 16 67212216 67212216 G A KIAA0895L Missense_Mutation p.R347C 0.62 tolerated(0.21) benign(0.009) TCGA-N7-A4Y0-01 16 67650654 67650654 G A CTCF Missense_Mutation p.R320H 0.46 deleterious(0) possibly_damaging(0.821) TCGA-N7-A4Y0-01 16 67709560 67709560 C T GFOD2 Missense_Mutation p.S219N 0.50 deleterious(0) probably_damaging(0.947) TCGA-N7-A4Y0-01 16 67863714 67863714 G A CENPT Silent p.D380D 0.46 TCGA-N7-A4Y0-01 16 67985067 67985067 C T SLC12A4 Missense_Mutation p.G427S 0.40 deleterious(0.02) probably_damaging(1) TCGA-N7-A4Y0-01 16 69726657 69726657 C T NFAT5 Missense_Mutation p.P977S 0.41 benign(0.009) TCGA-N7-A4Y0-01 16 70288530 70288530 A - AARS Frame_Shift_Del p.G799Efs*24 0.27 TCGA-N7-A4Y0-01 16 70698625 70698625 C A MTSS1L Missense_Mutation p.M449I 0.34 deleterious(0.02) benign(0.304) TCGA-N7-A4Y0-01 16 72822572 72822572 C T ZFHX3 Silent p.Q3201Q 0.43 TCGA-N7-A4Y0-01 16 75258615 75258615 G A CTRB1 Missense_Mutation p.G215S 0.41 tolerated(0.05) possibly_damaging(0.857) TCGA-N7-A4Y0-01 16 76528916 76528916 C T CNTNAP4 Silent p.C657C 0.36 TCGA-N7-A4Y0-01 16 78458772 78458772 T G WWOX Missense_Mutation p.L204R 0.08 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 16 85015539 85015539 C A ZDHHC7 Missense_Mutation p.G163V 0.45 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 16 85682261 85682261 C - GSE1 Frame_Shift_Del p.P112Lfs*13 0.38 TCGA-N7-A4Y0-01 16 87445609 87445609 A C ZCCHC14 Missense_Mutation p.H769Q 0.44 tolerated_low_confidence(0.82) unknown(0) TCGA-N7-A4Y0-01 16 87445612 87445612 G A ZCCHC14 Silent p.H768H 0.45 TCGA-N7-A4Y0-01 16 87788830 87788830 G - KLHDC4 Frame_Shift_Del p.S114Vfs*13 0.33 TCGA-N7-A4Y0-01 16 88643557 88643557 G A ZC3H18 Missense_Mutation p.R9Q 0.34 tolerated_low_confidence(0.25) unknown(0) TCGA-N7-A4Y0-01 16 89598886 89598886 G - SPG7 Frame_Shift_Del p.R389Lfs*50 0.32 TCGA-N7-A4Y0-01 16 89617001 89617001 C T SPG7 Missense_Mutation p.T588M 0.50 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 16 89985820 89985820 A G MC1R Missense_Mutation p.S52G 0.42 tolerated(0.22) probably_damaging(0.913) TCGA-N7-A4Y0-01 17 10555851 10555851 G A MYH3 Silent p.Y78Y 0.46 TCGA-N7-A4Y0-01 17 11725897 11725897 A C DNAH9 Missense_Mutation p.Q2998P 0.42 benign(0.393) TCGA-N7-A4Y0-01 17 12897743 12897744 TG - ELAC2 Frame_Shift_Del p.H702Qfs*46 0.35 TCGA-N7-A4Y0-01 17 16593988 16593988 G A CCDC144A Missense_Mutation p.D92N 0.39 tolerated_low_confidence(0.1) benign(0.029) TCGA-N7-A4Y0-01 17 17698653 17698653 C - RAI1 Frame_Shift_Del p.P799Lfs*20 0.34 TCGA-N7-A4Y0-01 17 25748146 25748146 G A TBC1D3P5 RNA 0.50 TCGA-N7-A4Y0-01 17 25976006 25976006 T C LGALS9 Nonstop_Mutation p.*356Qext*183 0.35 TCGA-N7-A4Y0-01 17 26519194 26519195 CT - NLK Frame_Shift_Del p.C497Hfs*9 0.42 TCGA-N7-A4Y0-01 17 27031790 27031790 C T PROCA1 Missense_Mutation p.A55T 0.42 tolerated(1) benign(0.007) TCGA-N7-A4Y0-01 17 30694992 30694992 G A ZNF207 Missense_Mutation p.A375T 0.36 tolerated(0.06) benign(0.26) TCGA-N7-A4Y0-01 17 3119791 3119791 C T OR1A1 Missense_Mutation p.R293W 0.37 deleterious(0.01) benign(0.014) TCGA-N7-A4Y0-01 17 31323957 31323957 G A SPACA3 Missense_Mutation p.S147N 0.45 deleterious(0.04) probably_damaging(1) TCGA-N7-A4Y0-01 17 32483140 32483140 G A ASIC2 Missense_Mutation p.R138W 0.40 deleterious(0.02) possibly_damaging(0.67) TCGA-N7-A4Y0-01 17 34074161 34074161 G T GAS2L2 Missense_Mutation p.P320H 0.41 deleterious(0) probably_damaging(0.914) TCGA-N7-A4Y0-01 17 34171886 34171886 G - TAF15 Frame_Shift_Del p.G530Afs*116 0.36 TCGA-N7-A4Y0-01 17 3438974 3438974 C T TRPV3 Missense_Mutation p.R226Q 0.36 deleterious(0) probably_damaging(0.945) TCGA-N7-A4Y0-01 17 37899524 37899524 C T GRB7 Silent p.F208F 0.47 TCGA-N7-A4Y0-01 17 38818272 38818272 T - KRT222 Frame_Shift_Del p.M41Wfs*8 0.36 TCGA-N7-A4Y0-01 17 38991616 38991616 T C TMEM99 3'UTR 0.49 TCGA-N7-A4Y0-01 17 39023275 39023275 C - KRT12 Frame_Shift_Del p.G55Efs*56 0.35 TCGA-N7-A4Y0-01 17 39334432 39334432 A G KRTAP4-2 5'UTR 0.47 TCGA-N7-A4Y0-01 17 40914372 40914372 G - RAMP2 Splice_Site p.X56_splice 0.36 TCGA-N7-A4Y0-01 17 41369782 41369782 G A TMEM106A Missense_Mutation p.A251T 0.41 tolerated(1) benign(0.016) TCGA-N7-A4Y0-01 17 4200057 4200057 G A UBE2G1 Nonsense_Mutation p.R68* 0.36 TCGA-N7-A4Y0-01 17 42272160 42272160 C T ATXN7L3 Missense_Mutation p.R245Q 0.35 deleterious(0.04) possibly_damaging(0.85) TCGA-N7-A4Y0-01 17 43473179 43473179 C A ARHGAP27 Missense_Mutation p.R467L 0.43 deleterious(0.01) possibly_damaging(0.564) TCGA-N7-A4Y0-01 17 43474152 43474152 C T ARHGAP27 Silent p.A311A 0.26 TCGA-N7-A4Y0-01 17 4534907 4534907 A G ALOX15 Silent p.S659S 0.40 TCGA-N7-A4Y0-01 17 46607839 46607839 G - HOXB1 Frame_Shift_Del p.P143Lfs*41 0.36 TCGA-N7-A4Y0-01 17 47243577 47243577 G T B4GALNT2 Missense_Mutation p.E412D 0.43 deleterious(0.03) possibly_damaging(0.866) TCGA-N7-A4Y0-01 17 4798393 4798393 C T MINK1 Missense_Mutation p.R981W 0.38 deleterious(0) probably_damaging(0.993) TCGA-N7-A4Y0-01 17 4836674 4836674 G A GP1BA Missense_Mutation p.V259M 0.44 deleterious(0) probably_damaging(0.93) TCGA-N7-A4Y0-01 17 48433967 48433968 CC - XYLT2 Frame_Shift_Del p.P528Rfs*17 0.40 TCGA-N7-A4Y0-01 17 4875738 4875738 G - CAMTA2 Frame_Shift_Del p.P889Lfs*9 0.46 TCGA-N7-A4Y0-01 17 53345077 53345077 T - HLF Intron 0.46 TCGA-N7-A4Y0-01 17 55028016 55028016 T - COIL Frame_Shift_Del p.K196Rfs*13 0.37 TCGA-N7-A4Y0-01 17 58767096 58767096 T C BCAS3 Missense_Mutation p.V63A 0.39 tolerated(0.64) benign(0.047) TCGA-N7-A4Y0-01 17 60059865 60059865 T C MED13 Missense_Mutation p.R1167G 0.43 tolerated(0.06) probably_damaging(0.996) TCGA-N7-A4Y0-01 17 67081776 67081776 G A ABCA6 Missense_Mutation p.T1340I 0.47 deleterious(0) possibly_damaging(0.859) TCGA-N7-A4Y0-01 17 6946780 6946780 G A SLC16A11 Missense_Mutation p.A42V 0.58 tolerated(1) benign(0.001) TCGA-N7-A4Y0-01 17 72368690 72368690 C T GPR142 Missense_Mutation p.A447V 0.35 tolerated_low_confidence(0.59) benign(0.001) TCGA-N7-A4Y0-01 17 72470735 72470735 T C CD300A Silent p.F148F 0.41 TCGA-N7-A4Y0-01 17 7294059 7294059 C - TMEM256-PLSCR3 Frame_Shift_Del p.G242Afs*23 0.34 TCGA-N7-A4Y0-01 17 7339922 7339922 A C TMEM102 Missense_Mutation p.K208N 0.43 tolerated_low_confidence(0.08) benign(0.004) TCGA-N7-A4Y0-01 17 74469406 74469406 A G RHBDF2 Silent p.C608C 0.57 TCGA-N7-A4Y0-01 17 76425217 76425217 G - DNAH17 Frame_Shift_Del p.N4125Tfs*34 0.22 TCGA-N7-A4Y0-01 17 76870097 76870097 G - TIMP2 Intron 0.27 TCGA-N7-A4Y0-01 17 76989847 76989847 C T CANT1 Missense_Mutation p.A331T 0.40 tolerated(0.43) benign(0.001) TCGA-N7-A4Y0-01 17 77756070 77756070 C T CBX2 Intron 0.27 TCGA-N7-A4Y0-01 17 77984212 77984212 C T TBC1D16 Missense_Mutation p.A176T 0.14 tolerated(0.39) benign(0.011) TCGA-N7-A4Y0-01 17 79650090 79650090 T C ARL16 Missense_Mutation p.M87V 0.10 deleterious(0) probably_damaging(0.989) TCGA-N7-A4Y0-01 17 79991680 79991680 C T RAC3 Missense_Mutation p.P185L 0.71 tolerated_low_confidence(0.06) benign(0.007) TCGA-N7-A4Y0-01 17 80049428 80049428 C T FASN Missense_Mutation p.V388M 0.48 deleterious(0) probably_damaging(0.978) TCGA-N7-A4Y0-01 17 80356186 80356186 C T OGFOD3 Missense_Mutation p.G237S 0.33 tolerated(0.1) probably_damaging(0.982) TCGA-N7-A4Y0-01 17 8448900 8448900 C T MYH10 Missense_Mutation p.A433T 0.41 possibly_damaging(0.87) TCGA-N7-A4Y0-01 17 9763352 9763352 A G GLP2R Missense_Mutation p.T287A 0.30 tolerated(0.23) benign(0.12) TCGA-N7-A4Y0-01 18 13885199 13885199 C T MC2R Missense_Mutation p.D107N 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-N7-A4Y0-01 18 21484616 21484616 C T LAMA3 Silent p.D2191D 0.44 TCGA-N7-A4Y0-01 18 22057624 22057624 G A HRH4 3'UTR 0.38 TCGA-N7-A4Y0-01 18 32720278 32720278 C T MAPRE2 Missense_Mutation p.P310L 0.38 tolerated(0.52) unknown(0) TCGA-N7-A4Y0-01 18 33800116 33800116 C T MOCOS Silent p.P632P 0.33 TCGA-N7-A4Y0-01 18 39575909 39575909 C A PIK3C3 Missense_Mutation p.P281H 0.42 tolerated(0.36) benign(0.017) TCGA-N7-A4Y0-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.36 TCGA-N7-A4Y0-01 18 44036491 44036491 C A RNF165 Silent p.P311P 0.40 TCGA-N7-A4Y0-01 18 44336542 44336543 - A ST8SIA5 5'UTR 0.60 TCGA-N7-A4Y0-01 18 47811722 47811722 C A CXXC1 Splice_Site p.X214_splice 0.35 TCGA-N7-A4Y0-01 18 52896149 52896149 T G TCF4 Missense_Mutation p.K705T 0.34 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 18 5290969 5290969 C T ZBTB14 Missense_Mutation p.S413N 0.36 tolerated(0.25) benign(0.005) TCGA-N7-A4Y0-01 18 59221723 59221723 A G CDH20 Missense_Mutation p.D734G 0.45 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 18 63525089 63525089 T G CDH7 Missense_Mutation p.F425V 0.04 deleterious(0) probably_damaging(0.973) TCGA-N7-A4Y0-01 18 63547798 63547798 G A CDH7 Missense_Mutation p.V676I 0.44 tolerated(0.25) benign(0.003) TCGA-N7-A4Y0-01 18 67697249 67697249 T - RTTN Frame_Shift_Del p.K1915Rfs*9 0.45 TCGA-N7-A4Y0-01 18 74536184 74536184 T C ZNF236 5'UTR 0.46 TCGA-N7-A4Y0-01 18 77703350 77703350 C T PQLC1 Missense_Mutation p.A106T 0.45 tolerated(0.74) benign(0.001) TCGA-N7-A4Y0-01 18 8114820 8114820 C T PTPRM Missense_Mutation p.T721I 0.53 tolerated(0.19) probably_damaging(0.937) TCGA-N7-A4Y0-01 19 10078753 10078753 A G COL5A3 Silent p.G1439G 0.40 TCGA-N7-A4Y0-01 19 10335188 10335188 C T S1PR2 Missense_Mutation p.V132M 0.41 tolerated(0.24) possibly_damaging(0.59) TCGA-N7-A4Y0-01 19 11409591 11409591 C T TSPAN16 Missense_Mutation p.A104V 0.31 tolerated(0.39) benign(0.026) TCGA-N7-A4Y0-01 19 12127235 12127235 T - ZNF433 Frame_Shift_Del p.K149Nfs*42 0.33 TCGA-N7-A4Y0-01 19 12825886 12825886 A G TNPO2 Missense_Mutation p.I249T 0.46 tolerated(0.08) benign(0.004) TCGA-N7-A4Y0-01 19 13879657 13879657 C T MRI1 Silent p.D248D 0.25 TCGA-N7-A4Y0-01 19 15052829 15052829 T - OR7C2 Frame_Shift_Del p.C179Vfs*7 0.42 TCGA-N7-A4Y0-01 19 15295220 15295220 C T NOTCH3 Missense_Mutation p.A818T 0.32 deleterious(0.05) benign(0.164) TCGA-N7-A4Y0-01 19 15572069 15572069 C A RASAL3 Missense_Mutation p.E168D 0.35 tolerated(0.18) possibly_damaging(0.622) TCGA-N7-A4Y0-01 19 16528892 16528892 G A EPS15L1 Missense_Mutation p.T325M 0.37 tolerated(0.28) benign(0.024) TCGA-N7-A4Y0-01 19 17039883 17039884 - C CPAMD8 Frame_Shift_Ins p.H1052Afs*30 0.42 TCGA-N7-A4Y0-01 19 17108016 17108016 C T CPAMD8 Missense_Mutation p.D381N 0.37 tolerated(0.08) probably_damaging(0.998) TCGA-N7-A4Y0-01 19 17691986 17691986 G A COLGALT1 Silent p.V534V 0.38 TCGA-N7-A4Y0-01 19 17836817 17836817 C T MAP1S Silent p.C208C 0.46 TCGA-N7-A4Y0-01 19 17955064 17955064 C T JAK3 Missense_Mutation p.V55M 0.40 deleterious(0.04) probably_damaging(0.967) TCGA-N7-A4Y0-01 19 18378026 18378026 C T KIAA1683 Silent p.T108T 0.44 TCGA-N7-A4Y0-01 19 1854672 1854672 G A KLF16 Missense_Mutation p.T182M 0.44 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 19 18569071 18569073 CTT - ELL In_Frame_Del p.K271del 0.39 TCGA-N7-A4Y0-01 19 19218753 19218753 T C SLC25A42 Missense_Mutation p.L183P 0.58 tolerated(0.31) benign(0.02) TCGA-N7-A4Y0-01 19 33095253 33095253 G A ANKRD27 Silent p.F857F 0.46 TCGA-N7-A4Y0-01 19 35500223 35500223 G A GRAMD1A Missense_Mutation p.R70H 0.38 deleterious(0) benign(0.256) TCGA-N7-A4Y0-01 19 36036905 36036905 A G TMEM147 Intron 0.62 TCGA-N7-A4Y0-01 19 36229400 36229400 C - KMT2B Frame_Shift_Del p.S2698Afs*40 0.31 TCGA-N7-A4Y0-01 19 36365461 36365461 G A APLP1 Missense_Mutation p.R371H 0.46 deleterious(0) probably_damaging(0.987) TCGA-N7-A4Y0-01 19 36574054 36574054 A G WDR62 Silent p.T487T 0.22 TCGA-N7-A4Y0-01 19 37005246 37005246 T C ZNF260 Missense_Mutation p.T299A 0.51 deleterious(0.01) probably_damaging(0.992) TCGA-N7-A4Y0-01 19 38056224 38056224 C A ZNF571 Missense_Mutation p.G369V 0.31 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 19 39664268 39664269 - C PAK4 Frame_Shift_Ins p.Q241Pfs*62 0.41 TCGA-N7-A4Y0-01 19 39963560 39963560 C T SUPT5H Missense_Mutation p.P716S 0.34 deleterious(0.03) benign(0.279) TCGA-N7-A4Y0-01 19 40316673 40316673 C T DYRK1B Silent p.K524K 0.36 TCGA-N7-A4Y0-01 19 40331278 40331278 C T FBL Missense_Mutation p.G54S 0.51 tolerated(0.38) unknown(0) TCGA-N7-A4Y0-01 19 41000844 41000844 C T SPTBN4 Missense_Mutation p.R210W 0.36 deleterious(0) possibly_damaging(0.902) TCGA-N7-A4Y0-01 19 42351810 42351810 C T DMRTC2 Silent p.R77R 0.30 TCGA-N7-A4Y0-01 19 44057626 44057626 C A XRCC1 Missense_Mutation p.K176N 0.43 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 19 45260667 45260667 G A BCL3 Missense_Mutation p.A270T 0.27 tolerated(0.05) benign(0.253) TCGA-N7-A4Y0-01 19 45655971 45655971 G A NKPD1 Missense_Mutation p.A575V 0.36 tolerated(0.29) benign(0.004) TCGA-N7-A4Y0-01 19 46283185 46283185 G - DMPK Frame_Shift_Del p.V46Sfs*24 0.29 TCGA-N7-A4Y0-01 19 46815488 46815488 C T HIF3A Silent p.L281L 0.40 TCGA-N7-A4Y0-01 19 47260141 47260141 C T FKRP Silent p.I478I 0.45 TCGA-N7-A4Y0-01 19 47424741 47424741 T - ARHGAP35 Frame_Shift_Del p.F938Lfs*10 0.34 TCGA-N7-A4Y0-01 19 4770703 4770703 A G MIR7-3 RNA 0.36 TCGA-N7-A4Y0-01 19 47856557 47856557 C A DHX34 Silent p.I90I 0.34 TCGA-N7-A4Y0-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.43 TCGA-N7-A4Y0-01 19 48848477 48848477 C T TMEM143 Silent p.P168P 0.41 TCGA-N7-A4Y0-01 19 49841230 49841230 G A CD37 Missense_Mutation p.G131S 0.39 tolerated(0.53) benign(0.169) TCGA-N7-A4Y0-01 19 49845739 49845739 G A TEAD2 Nonsense_Mutation p.R400* 0.43 TCGA-N7-A4Y0-01 19 49982287 49982287 A T FLT3LG Missense_Mutation p.E155V 0.43 tolerated(0.09) possibly_damaging(0.584) TCGA-N7-A4Y0-01 19 50381767 50381767 C A TBC1D17 Missense_Mutation p.L45I 0.48 tolerated(1) benign(0.012) TCGA-N7-A4Y0-01 19 50393104 50393104 C - IL4I1 Frame_Shift_Del p.P532Lfs*? 0.42 TCGA-N7-A4Y0-01 19 50979571 50979571 G T FAM71E1 Silent p.L25L 0.37 TCGA-N7-A4Y0-01 19 51217078 51217078 C T SHANK1 Missense_Mutation p.A257T 0.42 benign(0.388) TCGA-N7-A4Y0-01 19 5131092 5131092 G A KDM4B Missense_Mutation p.G441R 0.43 benign(0.428) TCGA-N7-A4Y0-01 19 54684567 54684567 G A MBOAT7 Silent p.A259A 0.43 TCGA-N7-A4Y0-01 19 55497518 55497518 G T NLRP2 Splice_Site p.X734_splice 0.33 TCGA-N7-A4Y0-01 19 56185489 56185490 - C U2AF2 3'UTR 0.37 TCGA-N7-A4Y0-01 19 56249561 56249561 G A NLRP9 Silent p.D60D 0.43 TCGA-N7-A4Y0-01 19 5661692 5661692 G A SAFB Missense_Mutation p.V676M 0.39 deleterious(0.03) unknown(0) TCGA-N7-A4Y0-01 19 58232447 58232447 G A ZNF671 Missense_Mutation p.T336I 0.27 deleterious(0) possibly_damaging(0.859) TCGA-N7-A4Y0-01 19 58427894 58427895 - C ZNF417 5'UTR 0.54 TCGA-N7-A4Y0-01 19 58596656 58596656 G - ZSCAN18 Frame_Shift_Del p.P366Lfs*119 0.39 TCGA-N7-A4Y0-01 19 58640477 58640477 A G ZNF329 Missense_Mutation p.S132P 0.52 deleterious(0.01) possibly_damaging(0.811) TCGA-N7-A4Y0-01 19 58850389 58850389 G A ZSCAN22 Silent p.Q391Q 0.41 TCGA-N7-A4Y0-01 19 58850783 58850783 G T ZSCAN22 3'UTR 0.45 TCGA-N7-A4Y0-01 19 6417016 6417016 G A KHSRP Silent p.D388D 0.07 TCGA-N7-A4Y0-01 19 7623913 7623913 G A PNPLA6 Missense_Mutation p.R1202H 0.44 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 19 9062393 9062394 TG - MUC16 Frame_Shift_Del p.T8351Sfs*13 0.40 TCGA-N7-A4Y0-01 1 10364532 10364532 C T KIF1B Intron 0.40 TCGA-N7-A4Y0-01 1 109493059 109493059 T C CLCC1 Translation_Start_Site p.M1? 0.44 deleterious(0) unknown(0) TCGA-N7-A4Y0-01 1 110086356 110086356 G T GPR61 Missense_Mutation p.A238S 0.38 deleterious(0) probably_damaging(0.992) TCGA-N7-A4Y0-01 1 111217016 111217016 T C KCNA3 Missense_Mutation p.Y139C 0.46 deleterious(0) probably_damaging(0.995) TCGA-N7-A4Y0-01 1 117484351 117484351 C T PTGFRN Missense_Mutation p.R22C 0.45 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 1 148009407 148009407 G A NBPF14 Missense_Mutation p.P640S 0.04 tolerated(0.42) possibly_damaging(0.803) TCGA-N7-A4Y0-01 1 150531877 150531877 C T ADAMTSL4 Missense_Mutation p.P960S 0.38 tolerated(0.15) probably_damaging(0.999) TCGA-N7-A4Y0-01 1 151261869 151261869 C T ZNF687 Silent p.C829C 0.42 TCGA-N7-A4Y0-01 1 151265430 151265432 CTC - PI4KB In_Frame_Del p.E795del 0.46 TCGA-N7-A4Y0-01 1 152188528 152188528 G A HRNR Silent p.G1859G 0.08 TCGA-N7-A4Y0-01 1 152281526 152281526 C T FLG Missense_Mutation p.A1946T 0.35 possibly_damaging(0.483) TCGA-N7-A4Y0-01 1 152384693 152384693 T C CRNN Missense_Mutation p.Q6R 0.44 tolerated(1) benign(0.001) TCGA-N7-A4Y0-01 1 152784988 152784988 C A LCE1B Silent p.P22P 0.39 TCGA-N7-A4Y0-01 1 153591516 153591516 T C S100A13 Splice_Site p.X52_splice 0.48 TCGA-N7-A4Y0-01 1 153923897 153923898 - G CRTC2 Frame_Shift_Ins p.S415Lfs*62 0.31 TCGA-N7-A4Y0-01 1 153932984 153932984 G T SLC39A1 Missense_Mutation p.L189I 0.49 deleterious(0.01) benign(0.154) TCGA-N7-A4Y0-01 1 155717654 155717654 T C GON4L 3'Flank 0.23 TCGA-N7-A4Y0-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.38 TCGA-N7-A4Y0-01 1 15873320 15873321 AT - DNAJC16 Frame_Shift_Del p.H273Rfs*5 0.32 TCGA-N7-A4Y0-01 1 160141103 160141103 G A ATP1A4 Silent p.P518P 0.46 TCGA-N7-A4Y0-01 1 16456084 16456084 G A EPHA2 Silent p.R890R 0.27 TCGA-N7-A4Y0-01 1 166890248 166890248 G A ILDR2 Missense_Mutation p.S527L 0.27 deleterious(0.02) benign(0.079) TCGA-N7-A4Y0-01 1 167095958 167095958 C A DUSP27 Missense_Mutation p.F530L 0.44 tolerated(0.19) benign(0.012) TCGA-N7-A4Y0-01 1 16767164 16767164 G A SPATA21 5'Flank 0.32 TCGA-N7-A4Y0-01 1 170705450 170705450 A G PRRX1 3'UTR 0.45 TCGA-N7-A4Y0-01 1 17292527 17292527 C T CROCC Missense_Mutation p.R1537C 0.40 possibly_damaging(0.835) TCGA-N7-A4Y0-01 1 17727969 17727969 G A PADI6 RNA 0.12 TCGA-N7-A4Y0-01 1 179078368 179078368 C T ABL2 Silent p.Q678Q 0.32 TCGA-N7-A4Y0-01 1 196799690 196799690 C T CFHR1 Missense_Mutation p.P223L 0.84 tolerated(0.14) probably_damaging(0.999) TCGA-N7-A4Y0-01 1 20141295 20141295 G A RNF186 Silent p.R100R 0.40 TCGA-N7-A4Y0-01 1 201789085 201789085 C T NAV1 3'UTR 0.44 TCGA-N7-A4Y0-01 1 203025953 203025953 G A PPFIA4 Missense_Mutation p.S255N 0.46 tolerated(0.05) benign(0.023) TCGA-N7-A4Y0-01 1 203819736 203819736 C T ZC3H11A Missense_Mutation p.A678V 0.42 tolerated(0.05) benign(0.255) TCGA-N7-A4Y0-01 1 205290640 205290640 C T NUAK2 Silent p.A39A 0.06 TCGA-N7-A4Y0-01 1 21183946 21183946 C - EIF4G3 Frame_Shift_Del p.A1047Pfs*13 0.34 TCGA-N7-A4Y0-01 1 215256668 215256668 T C KCNK2 5'UTR 0.40 TCGA-N7-A4Y0-01 1 215853543 215853543 C T USH2A Missense_Mutation p.R4081Q 0.39 benign(0.135) TCGA-N7-A4Y0-01 1 226453981 226453981 C A LIN9 Missense_Mutation p.R306L 0.54 deleterious(0) probably_damaging(0.96) TCGA-N7-A4Y0-01 1 227171773 227171773 G A ADCK3 Intron 0.50 TCGA-N7-A4Y0-01 1 227922791 227922791 T C JMJD4 Missense_Mutation p.T108A 0.20 deleterious(0.03) possibly_damaging(0.562) TCGA-N7-A4Y0-01 1 228474715 228474715 C T OBSCN Silent p.C3602C 0.25 TCGA-N7-A4Y0-01 1 230907846 230907846 G A CAPN9 Splice_Site p.X292_splice 0.39 TCGA-N7-A4Y0-01 1 233515338 233515338 A G MLK4 Silent p.S862S 0.10 TCGA-N7-A4Y0-01 1 23767955 23767955 G T ASAP3 Silent p.A253A 0.28 TCGA-N7-A4Y0-01 1 240601375 240601375 C T FMN2 Missense_Mutation p.T1642M 0.32 benign(0.293) TCGA-N7-A4Y0-01 1 241033369 241033369 C T RGS7 Missense_Mutation p.A146T 0.39 deleterious(0.04) probably_damaging(0.994) TCGA-N7-A4Y0-01 1 247004058 247004058 C G AHCTF1 3'UTR 0.40 TCGA-N7-A4Y0-01 1 248201969 248201969 C T OR2L2 Missense_Mutation p.R134C 0.42 tolerated(0.1) benign(0.009) TCGA-N7-A4Y0-01 1 26527326 26527326 C T CATSPER4 Silent p.G331G 0.33 TCGA-N7-A4Y0-01 1 27057936 27057937 - C ARID1A Frame_Shift_Ins p.Y551Lfs*72 0.37 TCGA-N7-A4Y0-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.32 TCGA-N7-A4Y0-01 1 27877512 27877512 C G AHDC1 Missense_Mutation p.G372A 0.41 tolerated_low_confidence(0.34) possibly_damaging(0.899) TCGA-N7-A4Y0-01 1 29189255 29189255 C T OPRD1 Silent p.D193D 0.49 TCGA-N7-A4Y0-01 1 33625365 33625365 C A TRIM62 Missense_Mutation p.A229S 0.41 tolerated(0.37) benign(0.001) TCGA-N7-A4Y0-01 1 36788049 36788049 C A EVA1B Silent p.S115S 0.45 TCGA-N7-A4Y0-01 1 41284281 41284281 C T KCNQ4 Missense_Mutation p.R213C 0.47 deleterious(0) probably_damaging(0.984) TCGA-N7-A4Y0-01 1 43909340 43909340 C - SZT2 Frame_Shift_Del p.P2844Rfs*9 0.35 TCGA-N7-A4Y0-01 1 47728788 47728788 G A STIL Silent p.N872N 0.37 TCGA-N7-A4Y0-01 1 52498467 52498467 G A KTI12 Missense_Mutation p.R323C 0.50 deleterious(0.02) benign(0.168) TCGA-N7-A4Y0-01 1 53543382 53543382 C G PODN Missense_Mutation p.P303R 0.28 tolerated(1) benign(0.312) TCGA-N7-A4Y0-01 1 55266305 55266305 C T TTC22 Missense_Mutation p.A178T 0.52 tolerated(0.74) benign(0.003) TCGA-N7-A4Y0-01 1 57373743 57373743 G - C8A Frame_Shift_Del p.R448Gfs*3 0.39 TCGA-N7-A4Y0-01 1 57537235 57537235 T - DAB1 Frame_Shift_Del p.K173Rfs*68 0.29 TCGA-N7-A4Y0-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.41 TCGA-N7-A4Y0-01 1 76262890 76262890 G A MSH4 Missense_Mutation p.A74T 0.53 tolerated_low_confidence(0.64) benign(0.001) TCGA-N7-A4Y0-01 1 78408251 78408251 A - NEXN Frame_Shift_Del p.N590Tfs*5 0.31 TCGA-N7-A4Y0-01 1 8074168 8074169 AG - ERRFI1 Frame_Shift_Del p.L164Gfs*2 0.35 TCGA-N7-A4Y0-01 1 8416169 8416169 G A RERE Missense_Mutation p.P1493S 0.42 unknown(0) TCGA-N7-A4Y0-01 1 84880445 84880445 G A DNASE2B Missense_Mutation p.R327Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 1 84963196 84963196 C G RPF1 3'UTR 0.48 TCGA-N7-A4Y0-01 1 892379 892379 C T NOC2L Silent p.A127A 0.43 TCGA-N7-A4Y0-01 1 9416315 9416315 C - SPSB1 Frame_Shift_Del p.L124Cfs*56 0.31 TCGA-N7-A4Y0-01 1 94650983 94650983 G C ARHGAP29 Missense_Mutation p.T612R 0.38 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 1 97235320 97235320 T C PTBP2 Silent p.R59R 0.39 TCGA-N7-A4Y0-01 20 14306108 14306108 T - FLRT3 3'UTR 0.28 TCGA-N7-A4Y0-01 20 30253853 30253853 C T BCL2L1 Missense_Mutation p.A201T 0.26 tolerated(0.06) benign(0.003) TCGA-N7-A4Y0-01 20 31395884 31395884 T C DNMT3B 3'UTR 0.67 TCGA-N7-A4Y0-01 20 32267721 32267721 G A E2F1 Missense_Mutation p.R138C 0.35 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 20 33515207 33515207 C T ACSS2 3'UTR 0.69 TCGA-N7-A4Y0-01 20 33590825 33590825 C A TRPC4AP 3'UTR 0.31 TCGA-N7-A4Y0-01 20 35444375 35444376 - C SOGA1 Frame_Shift_Ins p.P491Sfs*2 0.34 TCGA-N7-A4Y0-01 20 37546949 37546949 T C PPP1R16B Silent p.H448H 0.03 TCGA-N7-A4Y0-01 20 398171 398171 C G RBCK1 Missense_Mutation p.L57V 0.21 tolerated(0.07) possibly_damaging(0.562) TCGA-N7-A4Y0-01 20 40084461 40084461 C - CHD6 Frame_Shift_Del p.S999Pfs*19 0.26 TCGA-N7-A4Y0-01 20 40980772 40980772 T C PTPRT Missense_Mutation p.K572E 0.32 deleterious(0) benign(0.262) TCGA-N7-A4Y0-01 20 42333926 42333926 T C MYBL2 Missense_Mutation p.V478A 0.29 deleterious(0) possibly_damaging(0.816) TCGA-N7-A4Y0-01 20 43837242 43837242 A G SEMG1 Missense_Mutation p.D435G 0.58 tolerated(0.47) benign(0.024) TCGA-N7-A4Y0-01 20 43933378 43933378 C T MATN4 Missense_Mutation p.V45M 0.32 probably_damaging(1) TCGA-N7-A4Y0-01 20 4680506 4680506 T G PRNP Missense_Mutation p.C214G 0.64 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 20 47892343 47892343 G A ZNFX1 Missense_Mutation p.P12S 0.27 tolerated_low_confidence(0.06) benign(0.007) TCGA-N7-A4Y0-01 20 50255979 50255979 A G ATP9A Missense_Mutation p.M524T 0.31 deleterious(0) possibly_damaging(0.673) TCGA-N7-A4Y0-01 20 57428472 57428472 C T GNAS Missense_Mutation p.T51I 0.79 deleterious_low_confidence(0) unknown(0) TCGA-N7-A4Y0-01 20 57767907 57767907 G A ZNF831 Silent p.R611R 0.23 TCGA-N7-A4Y0-01 20 60927343 60927343 G A LAMA5 Silent p.I214I 0.25 TCGA-N7-A4Y0-01 20 61431073 61431073 C - MRGBP 3'UTR 0.27 TCGA-N7-A4Y0-01 20 62190582 62190582 C T HELZ2 3'UTR 0.33 TCGA-N7-A4Y0-01 20 62201882 62201882 C T HELZ2 Missense_Mutation p.S182N 0.62 tolerated(0.27) benign(0.01) TCGA-N7-A4Y0-01 20 62236098 62236098 A G GMEB2 Missense_Mutation p.L76S 0.15 tolerated(0.06) possibly_damaging(0.854) TCGA-N7-A4Y0-01 20 62328274 62328274 T A TNFRSF6B Missense_Mutation p.C52S 0.59 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 20 62839359 62839359 G A MYT1 Silent p.E270E 0.41 TCGA-N7-A4Y0-01 21 19629084 19629084 G A CHODL Missense_Mutation p.G113D 0.40 tolerated(0.35) possibly_damaging(0.524) TCGA-N7-A4Y0-01 21 31802764 31802764 G T KRTAP13-4 Missense_Mutation p.E57D 0.51 deleterious(0.04) benign(0.33) TCGA-N7-A4Y0-01 21 33068894 33068896 GGA - SCAF4 In_Frame_Del p.P316del 0.35 TCGA-N7-A4Y0-01 21 40574467 40574467 G T BRWD1 Missense_Mutation p.L1457I 0.39 tolerated(0.74) benign(0) TCGA-N7-A4Y0-01 21 43771119 43771119 C T TFF2 5'UTR 0.28 TCGA-N7-A4Y0-01 21 45810891 45810891 G A TRPM2 Missense_Mutation p.D475N 0.49 deleterious(0.04) possibly_damaging(0.833) TCGA-N7-A4Y0-01 21 45994016 45994016 C A KRTAP10-4 Silent p.P127P 0.08 TCGA-N7-A4Y0-01 21 47662805 47662805 A - MCM3AP Frame_Shift_Del p.F1779Lfs*5 0.33 TCGA-N7-A4Y0-01 22 18364029 18364029 A T MICAL3 Intron 0.45 TCGA-N7-A4Y0-01 22 18609160 18609161 CA - TUBA8 Frame_Shift_Del p.H139Qfs*72 0.29 TCGA-N7-A4Y0-01 22 19511475 19511475 C T CLDN5 Missense_Mutation p.A187T 0.50 deleterious(0) probably_damaging(0.98) TCGA-N7-A4Y0-01 22 19776481 19776481 C G GNB1L Silent p.V245V 0.29 TCGA-N7-A4Y0-01 22 19959451 19959451 G A ARVCF Silent p.G913G 0.34 TCGA-N7-A4Y0-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.41 TCGA-N7-A4Y0-01 22 26688852 26688852 C T SEZ6L Missense_Mutation p.A192V 0.49 tolerated(0.19) benign(0.004) TCGA-N7-A4Y0-01 22 30771603 30771603 A G CCDC157 Missense_Mutation p.Q603R 0.42 tolerated(1) probably_damaging(0.979) TCGA-N7-A4Y0-01 22 31836101 31836101 T C EIF4ENIF1 Missense_Mutation p.H908R 0.41 tolerated(0.2) benign(0.026) TCGA-N7-A4Y0-01 22 31838994 31838994 T - EIF4ENIF1 Frame_Shift_Del p.A721Qfs*139 0.38 TCGA-N7-A4Y0-01 22 32330115 32330117 AGA - C22orf24 In_Frame_Del p.F157del 0.47 TCGA-N7-A4Y0-01 22 38051313 38051313 G A SH3BP1 Silent p.P576P 0.45 TCGA-N7-A4Y0-01 22 38087403 38087403 G A NOL12 3'UTR 0.64 TCGA-N7-A4Y0-01 22 39222592 39222592 G - NPTXR Frame_Shift_Del p.F338Sfs*15 0.33 TCGA-N7-A4Y0-01 22 39441204 39441204 G A APOBEC3F Missense_Mutation p.V144M 0.39 tolerated(0.44) probably_damaging(0.999) TCGA-N7-A4Y0-01 22 39883622 39883622 C T MGAT3 Silent p.A90A 0.36 TCGA-N7-A4Y0-01 22 41612173 41612173 C A L3MBTL2 Missense_Mutation p.L143M 0.32 deleterious(0) possibly_damaging(0.664) TCGA-N7-A4Y0-01 22 41654017 41654017 G A RANGAP1 Silent p.L237L 0.47 TCGA-N7-A4Y0-01 22 41833282 41833282 C T TOB2 Missense_Mutation p.R23H 0.49 deleterious(0) probably_damaging(0.989) TCGA-N7-A4Y0-01 22 42606139 42606139 A - TCF20 Frame_Shift_Del p.Y1725Ifs*157 0.38 TCGA-N7-A4Y0-01 22 43570304 43570304 G A TTLL12 Silent p.G380G 0.35 TCGA-N7-A4Y0-01 22 44681537 44681537 T C KIAA1644 Missense_Mutation p.N124D 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-N7-A4Y0-01 22 50488585 50488585 A - TTLL8 Frame_Shift_Del p.L84Cfs*40 0.43 TCGA-N7-A4Y0-01 22 50885206 50885206 G A SBF1 3'UTR 0.78 TCGA-N7-A4Y0-01 22 51043378 51043378 G A MAPK8IP2 Missense_Mutation p.A550T 0.51 tolerated(0.41) benign(0.013) TCGA-N7-A4Y0-01 22 51065756 51065757 - C ARSA Frame_Shift_Ins p.L102Pfs*32 0.44 TCGA-N7-A4Y0-01 22 51159932 51159933 - G SHANK3 Frame_Shift_Ins p.A1243Gfs*69 0.53 TCGA-N7-A4Y0-01 22 51178329 51178330 - C ACR Frame_Shift_Ins p.H165Pfs*3 0.35 TCGA-N7-A4Y0-01 2 101883155 101883155 A G CNOT11 Missense_Mutation p.E351G 0.44 deleterious(0.04) probably_damaging(0.968) TCGA-N7-A4Y0-01 2 105924173 105924173 C A TGFBRAP1 Missense_Mutation p.G196C 0.42 deleterious(0) probably_damaging(0.996) TCGA-N7-A4Y0-01 2 112786408 112786408 C T MERTK Silent p.D989D 0.44 TCGA-N7-A4Y0-01 2 113067600 113067600 T C ZC3H6 Missense_Mutation p.Y159H 0.34 deleterious(0.04) probably_damaging(0.914) TCGA-N7-A4Y0-01 2 11332603 11332603 T - ROCK2 Frame_Shift_Del p.K1308Rfs*5 0.30 TCGA-N7-A4Y0-01 2 113500399 113500399 T A NT5DC4 3'UTR 0.36 TCGA-N7-A4Y0-01 2 118854108 118854108 A T INSIG2 5'UTR 0.40 TCGA-N7-A4Y0-01 2 120124762 120124762 C T DBI 5'Flank 0.45 TCGA-N7-A4Y0-01 2 120388230 120388230 C T PCDP1 Nonsense_Mutation p.R606* 0.45 TCGA-N7-A4Y0-01 2 120438732 120438732 G T TMEM177 Silent p.G101G 0.39 TCGA-N7-A4Y0-01 2 128471558 128471558 C T WDR33 Silent p.P969P 0.27 TCGA-N7-A4Y0-01 2 131812977 131812977 C T FAM168B Missense_Mutation p.V115I 0.35 tolerated_low_confidence(0.12) probably_damaging(0.981) TCGA-N7-A4Y0-01 2 132236920 132236920 C T TUBA3D Missense_Mutation p.P89L 0.38 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-N7-A4Y0-01 2 133541791 133541791 T C NCKAP5 Missense_Mutation p.I865V 0.35 tolerated(0.36) probably_damaging(0.997) TCGA-N7-A4Y0-01 2 133543031 133543031 G - NCKAP5 Frame_Shift_Del p.C452Afs*21 0.49 TCGA-N7-A4Y0-01 2 135119889 135119889 G A MGAT5 Silent p.Q430Q 0.41 TCGA-N7-A4Y0-01 2 136409480 136409482 CCT - R3HDM1 In_Frame_Del p.P605del 0.34 TCGA-N7-A4Y0-01 2 136566315 136566315 G A LCT Missense_Mutation p.A1201V 0.46 tolerated(0.05) probably_damaging(0.997) TCGA-N7-A4Y0-01 2 141819647 141819648 - T LRP1B Frame_Shift_Ins p.N403Kfs*2 0.27 TCGA-N7-A4Y0-01 2 150327435 150327435 T C LYPD6 3'UTR 0.40 TCGA-N7-A4Y0-01 2 157439478 157439478 C T GPD2 3'UTR 0.43 TCGA-N7-A4Y0-01 2 165350964 165350964 T - GRB14 Frame_Shift_Del p.I485* 0.32 TCGA-N7-A4Y0-01 2 175292598 175292598 A G SCRN3 Missense_Mutation p.N417S 0.37 tolerated_low_confidence(0.16) benign(0.001) TCGA-N7-A4Y0-01 2 17698825 17698825 T - RAD51AP2 Frame_Shift_Del p.E287Rfs*31 0.35 TCGA-N7-A4Y0-01 2 177053603 177053603 C G HOXD1 Missense_Mutation p.P25R 0.38 deleterious(0) probably_damaging(0.994) TCGA-N7-A4Y0-01 2 179325760 179325760 T - DFNB59 Frame_Shift_Del p.S275Lfs*10 0.14 TCGA-N7-A4Y0-01 2 179438269 179438269 A G TTN Missense_Mutation p.V24197A 0.34 TCGA-N7-A4Y0-01 2 179575969 179575969 C T TTN Missense_Mutation p.V9332M 0.33 TCGA-N7-A4Y0-01 2 190606079 190606079 G C ANKAR Missense_Mutation p.A1238P 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-N7-A4Y0-01 2 196788373 196788374 - T DNAH7 Frame_Shift_Ins p.N1257Kfs*3 0.31 TCGA-N7-A4Y0-01 2 196922833 196922833 G A DNAH7 Missense_Mutation p.S8L 0.48 tolerated_low_confidence(0.47) benign(0.001) TCGA-N7-A4Y0-01 2 198274672 198274672 G A SF3B1 Silent p.S242S 0.43 TCGA-N7-A4Y0-01 2 201683505 201683505 A - BZW1 Frame_Shift_Del p.N317Tfs*11 0.32 TCGA-N7-A4Y0-01 2 201785020 201785021 AG - ORC2 Frame_Shift_Del p.L464Sfs*11 0.27 TCGA-N7-A4Y0-01 2 204304017 204304017 G A RAPH1 3'UTR 0.60 TCGA-N7-A4Y0-01 2 207041592 207041592 A - GPR1 Frame_Shift_Del p.F127Sfs*2 0.34 TCGA-N7-A4Y0-01 2 219883883 219883883 G A CCDC108 Silent p.P1164P 0.36 TCGA-N7-A4Y0-01 2 219895832 219895832 A G CCDC108 Silent p.A337A 0.36 TCGA-N7-A4Y0-01 2 220037432 220037432 G C CNPPD1 Missense_Mutation p.T370S 0.56 tolerated_low_confidence(1) benign(0.001) TCGA-N7-A4Y0-01 2 220073024 220073024 G A ZFAND2B Missense_Mutation p.V161I 0.52 tolerated(0.26) benign(0.001) TCGA-N7-A4Y0-01 2 220073099 220073099 T C ZFAND2B Intron 0.42 TCGA-N7-A4Y0-01 2 220077176 220077176 C T ABCB6 Missense_Mutation p.R634H 0.40 deleterious(0) probably_damaging(0.996) TCGA-N7-A4Y0-01 2 220330792 220330792 G - SPEG Intron 0.23 TCGA-N7-A4Y0-01 2 227661891 227661891 G A IRS1 Nonsense_Mutation p.R522* 0.27 TCGA-N7-A4Y0-01 2 230223281 230223281 G A DNER Missense_Mutation p.T730I 0.51 deleterious(0) probably_damaging(0.985) TCGA-N7-A4Y0-01 2 232576653 232576653 A G PTMA Silent p.E58E 0.25 TCGA-N7-A4Y0-01 2 234070428 234070428 C T INPP5D Missense_Mutation p.P387L 0.54 deleterious(0.05) possibly_damaging(0.704) TCGA-N7-A4Y0-01 2 234750399 234750399 C T HJURP Missense_Mutation p.V343I 0.45 tolerated(0.07) benign(0.002) TCGA-N7-A4Y0-01 2 234775123 234775123 C T MSL3P1 RNA 0.29 TCGA-N7-A4Y0-01 2 241517019 241517019 T C RNPEPL1 Missense_Mutation p.S399P 0.47 deleterious(0.01) possibly_damaging(0.9) TCGA-N7-A4Y0-01 2 241808756 241808756 C T AGXT Missense_Mutation p.A112V 0.47 tolerated(0.2) benign(0.426) TCGA-N7-A4Y0-01 2 242036781 242036781 A G MTERFD2 Silent p.I194I 0.43 TCGA-N7-A4Y0-01 2 24905856 24905856 G T NCOA1 Missense_Mutation p.G131W 0.29 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 2 25050931 25050931 C T ADCY3 Missense_Mutation p.A758T 0.51 tolerated(0.09) possibly_damaging(0.627) TCGA-N7-A4Y0-01 2 25990452 25990452 T C ASXL2 Missense_Mutation p.R259G 0.33 tolerated(0.48) benign(0.074) TCGA-N7-A4Y0-01 2 27423872 27423872 G A SLC5A6 Silent p.Y586Y 0.14 TCGA-N7-A4Y0-01 2 29449848 29449848 T C ALK Missense_Mutation p.K1003E 0.28 tolerated(0.91) benign(0.002) TCGA-N7-A4Y0-01 2 32768513 32768513 G A BIRC6 Missense_Mutation p.R4166H 0.40 probably_damaging(0.994) TCGA-N7-A4Y0-01 2 37506904 37506904 G A PRKD3 Missense_Mutation p.A386V 0.27 tolerated(0.26) benign(0.007) TCGA-N7-A4Y0-01 2 39088332 39088332 A T DHX57 Missense_Mutation p.V407D 0.43 deleterious(0.01) probably_damaging(0.949) TCGA-N7-A4Y0-01 2 43451501 43451501 C T ZFP36L2 Missense_Mutation p.R481H 0.42 tolerated(0.08) unknown(0) TCGA-N7-A4Y0-01 2 43452260 43452260 C - ZFP36L2 Frame_Shift_Del p.G228Afs*233 0.37 TCGA-N7-A4Y0-01 2 44105047 44105047 T C ABCG8 Missense_Mutation p.W673R 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 2 47707956 47707956 G A MSH2 Silent p.S860S 0.47 TCGA-N7-A4Y0-01 2 69472531 69472531 C T ANTXR1 Missense_Mutation p.P537S 0.33 tolerated_low_confidence(0.33) unknown(0) TCGA-N7-A4Y0-01 2 69554051 69554051 A G GFPT1 Missense_Mutation p.Y684H 0.52 tolerated(0.42) benign(0.004) TCGA-N7-A4Y0-01 2 70035051 70035051 A G ANXA4 Missense_Mutation p.D107G 0.41 deleterious(0) probably_damaging(0.988) TCGA-N7-A4Y0-01 2 70188284 70188284 G - ASPRV1 Frame_Shift_Del p.S180Afs*28 0.38 TCGA-N7-A4Y0-01 2 70392681 70392682 - T C2orf42 Frame_Shift_Ins p.R411Tfs*29 0.34 TCGA-N7-A4Y0-01 2 73455661 73455661 C A PRADC1 Missense_Mutation p.W163L 0.38 tolerated(0.42) benign(0.065) TCGA-N7-A4Y0-01 2 73490910 73490910 C - FBXO41 Frame_Shift_Del p.N658Tfs*3 0.12 TCGA-N7-A4Y0-01 2 75113749 75113749 C T HK2 Missense_Mutation p.T723I 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-N7-A4Y0-01 2 84670463 84670463 G A SUCLG1 Missense_Mutation p.P88L 0.05 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-N7-A4Y0-01 2 89185510 89185510 G A IGKV4-1 Silent p.Q68Q 0.48 TCGA-N7-A4Y0-01 2 89976243 89976243 G A IGKV2D-30 Silent p.P38P 0.21 TCGA-N7-A4Y0-01 2 99439573 99439573 G A KIAA1211L Missense_Mutation p.A388V 0.53 tolerated(0.2) possibly_damaging(0.695) TCGA-N7-A4Y0-01 3 108812302 108812302 T C MORC1 Missense_Mutation p.M224V 0.40 tolerated(0.2) benign(0.004) TCGA-N7-A4Y0-01 3 111632582 111632582 A G PHLDB2 Intron 0.45 TCGA-N7-A4Y0-01 3 112357095 112357095 T - CCDC80 Frame_Shift_Del p.K553Rfs*2 0.30 TCGA-N7-A4Y0-01 3 112998226 112998226 A C BOC Missense_Mutation p.K648N 0.36 tolerated(0.11) probably_damaging(0.989) TCGA-N7-A4Y0-01 3 121190985 121190985 T C POLQ Silent p.L2190L 0.32 TCGA-N7-A4Y0-01 3 121351302 121351302 C T HCLS1 Missense_Mutation p.E373K 0.41 tolerated(0.11) benign(0.305) TCGA-N7-A4Y0-01 3 122289431 122289431 G A DTX3L Missense_Mutation p.V689M 0.38 deleterious(0) probably_damaging(0.994) TCGA-N7-A4Y0-01 3 123348433 123348433 C T MYLK Missense_Mutation p.E1668K 0.50 deleterious(0) benign(0.146) TCGA-N7-A4Y0-01 3 123419539 123419539 G A MYLK Missense_Mutation p.R926C 0.40 deleterious(0) benign(0.019) TCGA-N7-A4Y0-01 3 127323896 127323896 C - MCM2 Frame_Shift_Del p.R192Gfs*41 0.32 TCGA-N7-A4Y0-01 3 127335929 127335929 C T MCM2 Nonsense_Mutation p.R581* 0.45 TCGA-N7-A4Y0-01 3 128181453 128181453 G A DNAJB8 Silent p.D212D 0.47 TCGA-N7-A4Y0-01 3 129207227 129207227 A - IFT122 Frame_Shift_Del p.T712Qfs*15 0.30 TCGA-N7-A4Y0-01 3 130743461 130743461 G - ASTE1 Frame_Shift_Del p.I231Sfs*6 0.21 TCGA-N7-A4Y0-01 3 13399755 13399755 C T NUP210 Missense_Mutation p.M765I 0.23 tolerated(0.27) benign(0.004) TCGA-N7-A4Y0-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.34 TCGA-N7-A4Y0-01 3 141499234 141499234 A - GRK7 Frame_Shift_Del p.N212Tfs*16 0.29 TCGA-N7-A4Y0-01 3 147113791 147113791 G A ZIC4 Missense_Mutation p.P229L 0.11 tolerated(0.05) benign(0.002) TCGA-N7-A4Y0-01 3 149684300 149684300 T C PFN2 Silent p.K133K 0.44 TCGA-N7-A4Y0-01 3 151056503 151056503 C T P2RY12 Missense_Mutation p.G44D 0.35 deleterious(0.04) possibly_damaging(0.635) TCGA-N7-A4Y0-01 3 153870684 153870684 T C ARHGEF26 Missense_Mutation p.F484L 0.17 deleterious(0) probably_damaging(0.951) TCGA-N7-A4Y0-01 3 155206447 155206447 A G PLCH1 Splice_Site p.X835_splice 0.45 TCGA-N7-A4Y0-01 3 164712126 164712126 T C SI Missense_Mutation p.Y1587C 0.51 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 3 167754717 167754717 A G GOLIM4 Silent p.P250P 0.35 TCGA-N7-A4Y0-01 3 169846643 169846643 C T PHC3 Silent p.Q539Q 0.48 TCGA-N7-A4Y0-01 3 179107816 179107816 C T MFN1 Silent p.R679R 0.37 TCGA-N7-A4Y0-01 3 183515755 183515755 G A YEATS2 Missense_Mutation p.V1048I 0.45 tolerated_low_confidence(0.07) benign(0.038) TCGA-N7-A4Y0-01 3 183888361 183888361 G A DVL3 Missense_Mutation p.G657R 0.50 tolerated(0.06) probably_damaging(0.989) TCGA-N7-A4Y0-01 3 183994375 183994375 C T ECE2 Intron 0.28 TCGA-N7-A4Y0-01 3 186338739 186338739 A C AHSG 3'UTR 0.55 TCGA-N7-A4Y0-01 3 186953726 186953726 C T MASP1 Missense_Mutation p.E645K 0.39 tolerated(0.2) benign(0.049) TCGA-N7-A4Y0-01 3 192053197 192053197 C T FGF12 Missense_Mutation p.A123T 0.28 tolerated(1) benign(0.008) TCGA-N7-A4Y0-01 3 195395468 195395468 G A SDHAP2 RNA 0.17 TCGA-N7-A4Y0-01 3 196304421 196304421 A G FBXO45 Missense_Mutation p.Q139R 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-N7-A4Y0-01 3 196664542 196664542 C T NCBP2 Intron 0.45 TCGA-N7-A4Y0-01 3 196730857 196730857 T C MFI2 Silent p.G684G 0.43 TCGA-N7-A4Y0-01 3 196733483 196733483 G A MFI2 Silent p.H625H 0.29 TCGA-N7-A4Y0-01 3 32778914 32778914 T C CNOT10 Silent p.H569H 0.26 TCGA-N7-A4Y0-01 3 36873408 36873408 A G TRANK1 Missense_Mutation p.S2512P 0.43 deleterious(0) probably_damaging(0.993) TCGA-N7-A4Y0-01 3 37544757 37544757 T C ITGA9 Missense_Mutation p.L234P 0.41 tolerated(0.25) benign(0.02) TCGA-N7-A4Y0-01 3 38182689 38182689 T C MYD88 Missense_Mutation p.L289P 0.42 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 3 42907169 42907169 G A ACKR2 3'UTR 0.47 TCGA-N7-A4Y0-01 3 43122426 43122426 G A POMGNT2 Silent p.H166H 0.40 TCGA-N7-A4Y0-01 3 45879420 45879420 T C LZTFL1 Missense_Mutation p.R43G 0.45 deleterious(0) probably_damaging(0.976) TCGA-N7-A4Y0-01 3 48686273 48686273 G A CELSR3 Missense_Mutation p.T2219I 0.49 deleterious(0.01) benign(0.426) TCGA-N7-A4Y0-01 3 48802450 48802450 C T PRKAR2A Missense_Mutation p.R287H 0.34 tolerated(0.55) possibly_damaging(0.872) TCGA-N7-A4Y0-01 3 49723549 49723549 G A MST1 Missense_Mutation p.R365C 0.47 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 3 50311871 50311871 C - LSMEM2 5'Flank 0.37 TCGA-N7-A4Y0-01 3 52728777 52728777 T C GLT8D1 3'UTR 0.44 TCGA-N7-A4Y0-01 3 52864443 52864443 T - ITIH4 Intron 0.40 TCGA-N7-A4Y0-01 3 68934357 68934357 A G FAM19A4 5'UTR 0.35 TCGA-N7-A4Y0-01 3 8579029 8579029 A G LMCD1 Missense_Mutation p.N97S 0.46 deleterious(0.03) possibly_damaging(0.863) TCGA-N7-A4Y0-01 3 9781177 9781177 C T BRPF1 Missense_Mutation p.T365M 0.42 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 3 99513775 99513775 C - COL8A1 Frame_Shift_Del p.P345Qfs*36 0.33 TCGA-N7-A4Y0-01 4 100045604 100045604 G T ADH4 Missense_Mutation p.L378I 0.27 tolerated(0.29) benign(0.013) TCGA-N7-A4Y0-01 4 1017702 1017702 C T FGFRL1 Silent p.H177H 0.43 TCGA-N7-A4Y0-01 4 103790004 103790004 G A UBE2D3 5'UTR 0.46 TCGA-N7-A4Y0-01 4 10447381 10447381 T C ZNF518B Missense_Mutation p.Q191R 0.50 tolerated(0.44) benign(0.005) TCGA-N7-A4Y0-01 4 106604358 106604360 TGT - INTS12 In_Frame_Del p.T307del 0.47 TCGA-N7-A4Y0-01 4 110384778 110384778 G A SEC24B Silent p.A285A 0.34 TCGA-N7-A4Y0-01 4 134073201 134073201 G A PCDH10 Missense_Mutation p.G636R 0.37 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 4 1360206 1360206 G A UVSSA Silent p.L425L 0.41 TCGA-N7-A4Y0-01 4 141334145 141334145 C A CLGN Missense_Mutation p.D30Y 0.26 deleterious(0) benign(0.181) TCGA-N7-A4Y0-01 4 142053668 142053668 G T RNF150 Missense_Mutation p.R99S 0.38 tolerated(0.09) possibly_damaging(0.778) TCGA-N7-A4Y0-01 4 148984433 148984433 C T ARHGAP10 Missense_Mutation p.A721V 0.37 tolerated(0.4) benign(0.001) TCGA-N7-A4Y0-01 4 151749479 151749479 T - LRBA Frame_Shift_Del p.N1675Tfs*4 0.28 TCGA-N7-A4Y0-01 4 153864220 153864220 T G FHDC1 Missense_Mutation p.M4R 0.53 deleterious(0) benign(0.356) TCGA-N7-A4Y0-01 4 1729657 1729657 C T TACC3 Silent p.G176G 0.42 TCGA-N7-A4Y0-01 4 175160263 175160263 A - FBXO8 Frame_Shift_Del p.R219Vfs*17 0.35 TCGA-N7-A4Y0-01 4 186567832 186567832 T C SORBS2 Missense_Mutation p.H325R 0.46 tolerated(0.1) possibly_damaging(0.856) TCGA-N7-A4Y0-01 4 187159508 187159508 T C KLKB1 Missense_Mutation p.L196P 0.40 deleterious(0.02) possibly_damaging(0.812) TCGA-N7-A4Y0-01 4 1988038 1988038 C T NELFA Silent p.P253P 0.58 TCGA-N7-A4Y0-01 4 25675930 25675930 C A SLC34A2 Missense_Mutation p.P410H 0.32 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 4 39482626 39482626 G A LIAS 3'Flank 0.54 TCGA-N7-A4Y0-01 4 6031488 6031488 G A JAKMIP1 Silent p.D800D 0.33 TCGA-N7-A4Y0-01 4 6302765 6302765 G A WFS1 Missense_Mutation p.V415I 0.41 deleterious(0.04) probably_damaging(0.941) TCGA-N7-A4Y0-01 4 70156526 70156526 C A UGT2B28 Missense_Mutation p.P436H 0.41 deleterious(0) probably_damaging(0.976) TCGA-N7-A4Y0-01 4 74315095 74315095 T C AFP Missense_Mutation p.S368P 0.40 tolerated(0.55) benign(0.007) TCGA-N7-A4Y0-01 4 77091020 77091020 A C SCARB2 Silent p.P371P 0.38 TCGA-N7-A4Y0-01 4 79238582 79238583 - C FRAS1 Frame_Shift_Ins p.K630Qfs*19 0.42 TCGA-N7-A4Y0-01 4 83788042 83788042 C T SEC31A Silent p.Q372Q 0.43 TCGA-N7-A4Y0-01 4 84502845 84502845 C T AGPAT9 Silent p.T113T 0.37 TCGA-N7-A4Y0-01 4 8588799 8588799 C A GPR78 Silent p.P267P 0.39 TCGA-N7-A4Y0-01 4 90816607 90816607 C G MMRN1 Missense_Mutation p.T162S 0.48 tolerated_low_confidence(0.4) benign(0.001) TCGA-N7-A4Y0-01 4 9784646 9784646 C T DRD5 Silent p.A331A 0.50 TCGA-N7-A4Y0-01 5 10250008 10250008 T A FAM173B 5'Flank 0.38 TCGA-N7-A4Y0-01 5 108203563 108203563 C T FER Nonsense_Mutation p.Q193* 0.28 TCGA-N7-A4Y0-01 5 112824031 112824031 G A MCC Silent p.S27S 0.71 TCGA-N7-A4Y0-01 5 115783143 115783143 C T SEMA6A Silent p.T753T 0.55 TCGA-N7-A4Y0-01 5 122165305 122165305 T C SNX2 Missense_Mutation p.W508R 0.29 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 5 134785404 134785404 T C TIFAB Missense_Mutation p.K76E 0.55 deleterious(0.01) probably_damaging(0.946) TCGA-N7-A4Y0-01 5 135392371 135392371 T C TGFBI Missense_Mutation p.I522T 0.30 deleterious(0.01) probably_damaging(1) TCGA-N7-A4Y0-01 5 139221883 139221883 C A PSD2 Missense_Mutation p.L714I 0.28 tolerated(0.15) probably_damaging(0.967) TCGA-N7-A4Y0-01 5 139906583 139906583 C T ANKHD1 Missense_Mutation p.P1671S 0.16 probably_damaging(0.914) TCGA-N7-A4Y0-01 5 140208727 140208727 G A PCDHA6 Missense_Mutation p.A351T 0.46 tolerated_low_confidence(1) benign(0.001) TCGA-N7-A4Y0-01 5 140531421 140531421 G A PCDHB6 Missense_Mutation p.R528H 0.48 tolerated(0.23) benign(0.017) TCGA-N7-A4Y0-01 5 140564303 140564303 C T PCDHB16 Silent p.G723G 0.51 TCGA-N7-A4Y0-01 5 140604308 140604309 AG - PCDHB14 Frame_Shift_Del p.S413Pfs*30 0.43 TCGA-N7-A4Y0-01 5 140627364 140627364 A G PCDHB15 Missense_Mutation p.S740G 0.60 deleterious_low_confidence(0.05) benign(0.027) TCGA-N7-A4Y0-01 5 140730213 140730213 G A PCDHGB1 Missense_Mutation p.R129H 0.30 tolerated(0.6) benign(0.001) TCGA-N7-A4Y0-01 5 140799074 140799074 G A PCDHGB7 Missense_Mutation p.V550M 0.25 deleterious(0) probably_damaging(0.993) TCGA-N7-A4Y0-01 5 141334689 141334689 G T PCDH12 Missense_Mutation p.L910M 0.30 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 5 145252292 145252292 C T GRXCR2 Silent p.L80L 0.39 TCGA-N7-A4Y0-01 5 14711209 14711209 A - ANKH 3'UTR 0.37 TCGA-N7-A4Y0-01 5 149011789 149011789 G - ARHGEF37 3'UTR 0.38 TCGA-N7-A4Y0-01 5 149509511 149509511 G A PDGFRB Missense_Mutation p.P463L 0.38 tolerated(0.73) benign(0.015) TCGA-N7-A4Y0-01 5 155041 155041 C T PLEKHG4B Nonsense_Mutation p.Q326* 0.47 TCGA-N7-A4Y0-01 5 167882440 167882440 C T WWC1 Missense_Mutation p.P913L 0.55 deleterious(0.04) benign(0.353) TCGA-N7-A4Y0-01 5 174151740 174151740 G C MSX2 Silent p.P26P 0.19 TCGA-N7-A4Y0-01 5 176004718 176004718 G A CDHR2 Silent p.R477R 0.32 TCGA-N7-A4Y0-01 5 176696631 176696631 C T NSD1 Nonsense_Mutation p.R1778* 0.60 TCGA-N7-A4Y0-01 5 176963600 176963600 G A FAM193B Missense_Mutation p.P279S 0.43 tolerated(0.15) possibly_damaging(0.481) TCGA-N7-A4Y0-01 5 179146716 179146716 C A CANX Missense_Mutation p.P320H 0.49 deleterious(0) probably_damaging(0.996) TCGA-N7-A4Y0-01 5 33937225 33937225 C T RXFP3 Missense_Mutation p.T127M 0.38 deleterious(0) probably_damaging(0.953) TCGA-N7-A4Y0-01 5 39383336 39383336 T C DAB2 Missense_Mutation p.E242G 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-N7-A4Y0-01 5 40964971 40964971 T A C7 Nonsense_Mutation p.C626* 0.37 TCGA-N7-A4Y0-01 5 476346 476346 G A SLC9A3 Silent p.L680L 0.29 TCGA-N7-A4Y0-01 5 54570837 54570837 T C DHX29 Missense_Mutation p.E810G 0.59 deleterious(0.05) benign(0.424) TCGA-N7-A4Y0-01 5 58476445 58476445 A T PDE4D Missense_Mutation p.S262T 0.34 tolerated_low_confidence(0.33) benign(0.01) TCGA-N7-A4Y0-01 5 82837257 82837257 T C VCAN Missense_Mutation p.L2812S 0.53 tolerated(0.81) benign(0.001) TCGA-N7-A4Y0-01 5 83239262 83239262 C A EDIL3 Silent p.L473L 0.32 TCGA-N7-A4Y0-01 5 92929320 92929320 G A NR2F1 Silent p.S348S 0.38 TCGA-N7-A4Y0-01 6 100896035 100896035 G A SIM1 Silent p.C279C 0.33 TCGA-N7-A4Y0-01 6 102372596 102372596 T C GRIK2 Splice_Site p.X623_splice 0.24 TCGA-N7-A4Y0-01 6 107008716 107008716 A C AIM1 Missense_Mutation p.Q1557P 0.59 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 6 111409147 111409147 C T SLC16A10 Silent p.P64P 0.30 TCGA-N7-A4Y0-01 6 128410948 128410948 T C PTPRK Missense_Mutation p.Q451R 0.65 tolerated(1) benign(0) TCGA-N7-A4Y0-01 6 132171156 132171156 G A ENPP1 Missense_Mutation p.E114K 0.55 deleterious(0.04) probably_damaging(0.988) TCGA-N7-A4Y0-01 6 133044934 133044934 C T VNN3 3'UTR 0.27 TCGA-N7-A4Y0-01 6 135287507 135287507 C G HBS1L Missense_Mutation p.R668P 0.27 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 6 135811796 135811796 T C AHI1 Missense_Mutation p.K34E 0.29 deleterious(0.04) benign(0.257) TCGA-N7-A4Y0-01 6 136990430 136990430 G C MAP3K5 Missense_Mutation p.R453G 0.27 deleterious(0) possibly_damaging(0.663) TCGA-N7-A4Y0-01 6 146209222 146209222 T C SHPRH Missense_Mutation p.H1630R 0.20 deleterious(0.02) possibly_damaging(0.821) TCGA-N7-A4Y0-01 6 152738148 152738148 G T SYNE1 Missense_Mutation p.D1808E 0.59 benign(0.338) TCGA-N7-A4Y0-01 6 153043291 153043291 G A MYCT1 Missense_Mutation p.R204H 0.39 deleterious(0.02) probably_damaging(0.949) TCGA-N7-A4Y0-01 6 15496722 15496722 G - JARID2 Frame_Shift_Del p.R425Gfs*36 0.47 TCGA-N7-A4Y0-01 6 159188477 159188477 G - EZR Frame_Shift_Del p.P471Rfs*11 0.51 TCGA-N7-A4Y0-01 6 160526039 160526039 G A IGF2R Missense_Mutation p.A2467T 0.29 tolerated(0.4) benign(0.014) TCGA-N7-A4Y0-01 6 160905191 160905191 T C LPAL2 RNA 0.61 TCGA-N7-A4Y0-01 6 167416821 167416821 T - FGFR1OP Intron 0.39 TCGA-N7-A4Y0-01 6 167417716 167417716 T - FGFR1OP Intron 0.41 TCGA-N7-A4Y0-01 6 170844432 170844432 C T PSMB1 Missense_Mutation p.R201Q 0.57 tolerated(0.63) benign(0) TCGA-N7-A4Y0-01 6 26045754 26045754 C A HIST1H3C Missense_Mutation p.P39H 0.62 deleterious_low_confidence(0.01) benign(0.001) TCGA-N7-A4Y0-01 6 26637566 26637566 C T ZNF322 3'UTR 0.25 TCGA-N7-A4Y0-01 6 30039052 30039052 C T RNF39 Missense_Mutation p.V367M 0.19 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 6 30521243 30521243 G A GNL1 Missense_Mutation p.P231L 0.57 deleterious(0) probably_damaging(0.957) TCGA-N7-A4Y0-01 6 31541415 31541415 T C LTA Missense_Mutation p.I188T 0.06 tolerated(0.37) benign(0.045) TCGA-N7-A4Y0-01 6 31594934 31594934 C T PRRC2A Missense_Mutation p.R417W 0.59 unknown(0) TCGA-N7-A4Y0-01 6 31785120 31785120 C T HSPA1A Silent p.D529D 0.18 TCGA-N7-A4Y0-01 6 32065702 32065702 C T TNXB Missense_Mutation p.E92K 0.63 probably_damaging(0.956) TCGA-N7-A4Y0-01 6 3225652 3225653 - C TUBB2B Frame_Shift_Ins p.D224Gfs*300 0.32 TCGA-N7-A4Y0-01 6 33037547 33037547 C T HLA-DPA1 Missense_Mutation p.V73I 0.49 tolerated(0.22) benign(0.006) TCGA-N7-A4Y0-01 6 33231322 33231322 C T VPS52 Missense_Mutation p.R578Q 0.42 deleterious(0.01) probably_damaging(0.981) TCGA-N7-A4Y0-01 6 33630351 33630351 C T ITPR3 Missense_Mutation p.T253M 0.57 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 6 34847863 34847863 C T UHRF1BP1 3'Flank 0.52 TCGA-N7-A4Y0-01 6 35424067 35424067 C T FANCE Silent p.D264D 0.29 TCGA-N7-A4Y0-01 6 36275517 36275517 C A PNPLA1 3'UTR 0.37 TCGA-N7-A4Y0-01 6 36359628 36359628 A G PXT1 Silent p.D108D 0.28 TCGA-N7-A4Y0-01 6 42036324 42036324 C T TAF8 Silent p.N253N 0.27 TCGA-N7-A4Y0-01 6 43034148 43034148 C T KLC4 Missense_Mutation p.R244C 0.34 deleterious(0.02) possibly_damaging(0.556) TCGA-N7-A4Y0-01 6 43550104 43550104 T - POLH Frame_Shift_Del p.F18Lfs*12 0.43 TCGA-N7-A4Y0-01 6 53517031 53517031 C T KLHL31 Missense_Mutation p.A424T 0.26 deleterious(0) benign(0.105) TCGA-N7-A4Y0-01 6 53787465 53787465 A G LRRC1 Silent p.P483P 0.26 TCGA-N7-A4Y0-01 6 72596668 72596668 G A RIMS1 5'Flank 0.53 TCGA-N7-A4Y0-01 6 74363524 74363524 G A SLC17A5 Missense_Mutation p.A29V 0.72 tolerated(0.34) benign(0.002) TCGA-N7-A4Y0-01 6 7583793 7583793 T - DSP Frame_Shift_Del p.S2101Qfs*15 0.44 TCGA-N7-A4Y0-01 6 76624710 76624710 T C MYO6 Missense_Mutation p.L1280P 0.63 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 6 79711725 79711726 - A PHIP Frame_Shift_Ins p.L590Ffs*3 0.27 TCGA-N7-A4Y0-01 6 83806836 83806836 T C DOPEY1 Splice_Site p.X46_splice 0.59 TCGA-N7-A4Y0-01 6 87970974 87970974 A - ZNF292 Frame_Shift_Del p.R2545Gfs*14 0.33 TCGA-N7-A4Y0-01 6 99283719 99283719 C T POU3F2 Silent p.L324L 0.59 TCGA-N7-A4Y0-01 7 100283633 100283633 G A GIGYF1 Missense_Mutation p.P340S 0.43 tolerated(0.71) unknown(0) TCGA-N7-A4Y0-01 7 100816662 100816662 T C NAT16 Missense_Mutation p.H151R 0.43 tolerated(0.16) benign(0.006) TCGA-N7-A4Y0-01 7 101256611 101256611 C A MYL10 3'UTR 1.00 TCGA-N7-A4Y0-01 7 106508511 106508511 C T PIK3CG Missense_Mutation p.H169Y 0.59 tolerated(0.09) possibly_damaging(0.837) TCGA-N7-A4Y0-01 7 106826902 106826902 C T HBP1 Missense_Mutation p.H213Y 0.37 deleterious(0) probably_damaging(0.954) TCGA-N7-A4Y0-01 7 111423966 111423966 G A DOCK4 Silent p.G1148G 0.46 TCGA-N7-A4Y0-01 7 120386010 120386010 C T KCND2 Silent p.S548S 0.31 TCGA-N7-A4Y0-01 7 127014143 127014143 A G ZNF800 Missense_Mutation p.V416A 0.38 tolerated(0.78) benign(0) TCGA-N7-A4Y0-01 7 128037026 128037026 G A IMPDH1 Silent p.I375I 0.37 TCGA-N7-A4Y0-01 7 134252969 134252969 C T AKR1B15 Silent p.H70H 0.43 TCGA-N7-A4Y0-01 7 137339501 137339501 C A DGKI Nonsense_Mutation p.G239* 0.37 TCGA-N7-A4Y0-01 7 138522791 138522791 C T KIAA1549 Missense_Mutation p.G1905S 0.52 tolerated(0.16) probably_damaging(1) TCGA-N7-A4Y0-01 7 140482927 140482927 G - BRAF Frame_Shift_Del p.P403Lfs*8 0.29 TCGA-N7-A4Y0-01 7 14217687 14217687 G A DGKB Missense_Mutation p.R739W 0.39 deleterious(0) probably_damaging(1) TCGA-N7-A4Y0-01 7 142749858 142749858 C T OR6V1 Nonsense_Mutation p.Q141* 0.06 TCGA-N7-A4Y0-01 7 143053570 143053570 G - FAM131B 3'UTR 0.41 TCGA-N7-A4Y0-01 7 143087016 143087016 T C ZYX Silent p.T520T 0.47 TCGA-N7-A4Y0-01 7 143826815 143826815 T A OR2A14 Missense_Mutation p.F204I 0.46 tolerated(0.08) benign(0.039) TCGA-N7-A4Y0-01 7 147914501 147914501 G A CNTNAP2 Silent p.P1044P 0.43 TCGA-N7-A4Y0-01 7 150490215 150490215 C T TMEM176B Nonsense_Mutation p.W187* 0.31 TCGA-N7-A4Y0-01 7 150935414 150935415 - G CHPF2 Frame_Shift_Ins p.A658Gfs*8 0.42 TCGA-N7-A4Y0-01 7 151046250 151046250 G A NUB1 Missense_Mutation p.R94H 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-N7-A4Y0-01 7 151873588 151873588 A - KMT2C Frame_Shift_Del p.S2984Lfs*6 0.40 TCGA-N7-A4Y0-01 7 152055715 152055715 C T KMT2C Missense_Mutation p.M69I 0.40 benign(0.066) TCGA-N7-A4Y0-01 7 1976422 1976422 G A MAD1L1 Nonsense_Mutation p.R570* 0.42 TCGA-N7-A4Y0-01 7 26192151 26192151 C T NFE2L3 Silent p.G11G 0.42 TCGA-N7-A4Y0-01 7 2687615 2687615 C T TTYH3 Silent p.L217L 0.06 TCGA-N7-A4Y0-01 7 30085829 30085829 A G PLEKHA8 Missense_Mutation p.H54R 0.37 deleterious(0) probably_damaging(0.982) TCGA-N7-A4Y0-01 7 36461586 36461588 CTT - ANLN In_Frame_Del p.L764del 0.49 TCGA-N7-A4Y0-01 7 42949408 42949408 C T C7orf25 Silent p.T422T 0.52 TCGA-N7-A4Y0-01 7 44098476 44098476 G T DBNL Splice_Site p.X253_splice 0.51 TCGA-N7-A4Y0-01 7 44146234 44146234 A G AEBP1 Missense_Mutation p.R115G 0.76 deleterious_low_confidence(0) unknown(0) TCGA-N7-A4Y0-01 7 45930298 45930298 C A IGFBP1 Silent p.T167T 0.35 TCGA-N7-A4Y0-01 7 48284175 48284175 T C ABCA13 Missense_Mutation p.L422S 0.33 possibly_damaging(0.466) TCGA-N7-A4Y0-01 7 51258732 51258732 G T COBL Missense_Mutation p.A167D 0.20 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y0-01 7 5645075 5645075 C T FSCN1 Silent p.T484T 0.62 TCGA-N7-A4Y0-01 7 6204506 6204506 C T CYTH3 3'UTR 0.38 TCGA-N7-A4Y0-01 7 65842378 65842378 G T LINC00174 RNA 0.27 TCGA-N7-A4Y0-01 7 72281094 72281094 C T TYW1B Missense_Mutation p.G132D 0.38 deleterious(0.01) probably_damaging(1) TCGA-N7-A4Y0-01 7 72297544 72297544 C A TYW1B Missense_Mutation p.D9Y 0.30 deleterious(0) possibly_damaging(0.873) TCGA-N7-A4Y0-01 7 72658461 72658461 C A GTF2IRD2P1 RNA 0.52 TCGA-N7-A4Y0-01 7 75182877 75182877 C T HIP1 Missense_Mutation p.A724T 0.37 tolerated(0.88) benign(0.001) TCGA-N7-A4Y0-01 7 80276069 80276069 C T CD36 Missense_Mutation p.R5W 0.45 deleterious(0.01) possibly_damaging(0.841) TCGA-N7-A4Y0-01 7 86990793 86990793 T C CROT Missense_Mutation p.F138L 0.39 tolerated(1) benign(0.004) TCGA-N7-A4Y0-01 7 93106930 93106930 G A CALCR Missense_Mutation p.P104S 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-N7-A4Y0-01 7 97846804 97846804 G A TECPR1 Silent p.D1132D 0.50 TCGA-N7-A4Y0-01 7 99998670 99998670 G A ZCWPW1 Silent p.G638G 0.35 TCGA-N7-A4Y0-01 8 104898136 104898136 A G RIMS2 Missense_Mutation p.R437G 0.10 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-N7-A4Y0-01 8 106815052 106815052 A - ZFPM2 Frame_Shift_Del p.K915Nfs*8 0.39 TCGA-N7-A4Y0-01 8 10755310 10755310 T - XKR6 3'UTR 0.52 TCGA-N7-A4Y0-01 8 110587865 110587865 G A SYBU Missense_Mutation p.T421M 0.17 tolerated(0.15) benign(0.063) TCGA-N7-A4Y0-01 8 120850597 120850597 C T DSCC1 Silent p.L325L 0.23 TCGA-N7-A4Y0-01 8 124266662 124266662 T A ZHX1 Nonsense_Mutation p.K509* 0.27 TCGA-N7-A4Y0-01 8 124382144 124382144 T C ATAD2 Missense_Mutation p.E283G 0.65 tolerated(0.09) benign(0.002) TCGA-N7-A4Y0-01 8 124382152 124382152 A T ATAD2 Missense_Mutation p.D280E 0.68 tolerated(1) benign(0) TCGA-N7-A4Y0-01 8 124382167 124382167 A T ATAD2 Missense_Mutation p.D275E 0.56 tolerated(0.75) benign(0.001) TCGA-N7-A4Y0-01 8 125072512 125072512 T C FER1L6 Missense_Mutation p.L989P 0.69 deleterious(0) probably_damaging(0.967) TCGA-N7-A4Y0-01 8 126011893 126011893 C - SQLE Frame_Shift_Del p.P85Lfs*25 0.42 TCGA-N7-A4Y0-01 8 128750639 128750639 C T MYC Missense_Mutation p.A59V 0.71 deleterious(0.03) possibly_damaging(0.733) TCGA-N7-A4Y0-01 8 130760585 130760585 C T GSDMC 3'UTR 0.20 TCGA-N7-A4Y0-01 8 133910007 133910007 C T TG Missense_Mutation p.P1039S 0.24 deleterious(0.03) probably_damaging(1) TCGA-N7-A4Y0-01 8 133923762 133923762 T C TG Silent p.P1381P 0.28 TCGA-N7-A4Y0-01 8 139189663 139189663 C T FAM135B Missense_Mutation p.V344I 0.32 deleterious(0.03) benign(0.12) TCGA-N7-A4Y0-01 8 142148219 142148219 T C DENND3 Missense_Mutation p.Y82H 0.11 deleterious(0) benign(0.35) TCGA-N7-A4Y0-01 8 144649983 144649983 G A MROH6 Silent p.L614L 0.23 TCGA-N7-A4Y0-01 8 144800992 144800992 G A MAPK15 Missense_Mutation p.V112I 0.29 tolerated(1) benign(0.003) TCGA-N7-A4Y0-01 8 144945055 144945055 G A EPPK1 Silent p.P789P 0.24 TCGA-N7-A4Y0-01 8 144947314 144947314 G - EPPK1 Frame_Shift_Del p.R37Gfs*7 0.25 TCGA-N7-A4Y0-01 8 144997961 144997961 G A PLEC Missense_Mutation p.R2183W 0.22 unknown(0) TCGA-N7-A4Y0-01 8 145773375 145773375 G - ARHGAP39 Frame_Shift_Del p.S366Rfs*18 0.30 TCGA-N7-A4Y0-01 8 1581004 1581004 G A DLGAP2 Silent p.A454A 0.54 TCGA-N7-A4Y0-01 8 17611442 17611442 G A MTUS1 Silent p.C625C 0.27 TCGA-N7-A4Y0-01 8 18729144 18729145 - TC PSD3 Frame_Shift_Ins p.D410Efs*73 0.53 TCGA-N7-A4Y0-01 8 22034617 22034617 G A BMP1 Missense_Mutation p.R232H 0.18 tolerated(0.16) benign(0) TCGA-N7-A4Y0-01 8 22035142 22035142 T C BMP1 Intron 0.29 TCGA-N7-A4Y0-01 8 25715915 25715915 C T EBF2 Missense_Mutation p.S483N 0.24 deleterious_low_confidence(0.01) benign(0.037) TCGA-N7-A4Y0-01 8 26236877 26236877 C T BNIP3L 5'Flank 0.23 TCGA-N7-A4Y0-01 8 26365217 26365217 C T PNMA2 Missense_Mutation p.R352Q 0.20 tolerated(0.38) benign(0.011) TCGA-N7-A4Y0-01 8 26435691 26435692 - A DPYSL2 5'UTR 0.20 TCGA-N7-A4Y0-01 8 27661010 27661010 A G ESCO2 3'UTR 0.59 TCGA-N7-A4Y0-01 8 28314409 28314409 C T FBXO16 Silent p.Q127Q 0.75 TCGA-N7-A4Y0-01 8 28384902 28384902 A G FZD3 Missense_Mutation p.I209V 0.18 tolerated(1) benign(0.007) TCGA-N7-A4Y0-01 8 30539472 30539473 - G GSR Frame_Shift_Ins p.I421Yfs*10 0.15 TCGA-N7-A4Y0-01 8 30560725 30560725 G T GSR Silent p.A175A 0.06 TCGA-N7-A4Y0-01 8 37693106 37693106 C T GPR124 Missense_Mutation p.P623L 0.21 tolerated(0.16) benign(0.052) TCGA-N7-A4Y0-01 8 38835513 38835513 T C HTRA4 Silent p.L271L 0.23 TCGA-N7-A4Y0-01 8 42022614 42022614 G - AP3M2 Frame_Shift_Del p.V205* 0.21 TCGA-N7-A4Y0-01 8 42275398 42275398 C T SLC20A2 Missense_Mutation p.V628M 0.55 deleterious(0) probably_damaging(0.986) TCGA-N7-A4Y0-01 8 48701554 48701555 - T PRKDC Frame_Shift_Ins p.N3604Kfs*3 0.15 TCGA-N7-A4Y0-01 8 48801143 48801143 G A PRKDC Missense_Mutation p.A1449V 0.26 benign(0.098) TCGA-N7-A4Y0-01 8 52336136 52336136 C A PXDNL Silent p.T598T 0.27 TCGA-N7-A4Y0-01 8 53586500 53586500 A G RB1CC1 Missense_Mutation p.F303L 0.70 tolerated(0.79) benign(0.001) TCGA-N7-A4Y0-01 8 54163550 54163550 G A OPRK1 Silent p.C16C 0.32 TCGA-N7-A4Y0-01 8 55371765 55371766 - G SOX17 Frame_Shift_Ins p.G154Rfs*8 0.55 TCGA-N7-A4Y0-01 8 56863330 56863330 T C LYN Silent p.S158S 0.17 TCGA-N7-A4Y0-01 8 61778453 61778454 - G CHD7 Frame_Shift_Ins p.D2988Gfs*2 0.53 TCGA-N7-A4Y0-01 8 623411 623411 C T ERICH1 Missense_Mutation p.G314D 0.21 tolerated(0.66) benign(0.26) TCGA-N7-A4Y0-01 8 69009342 69009342 G A PREX2 Missense_Mutation p.G820D 0.71 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 8 71056964 71056964 T - NCOA2 Frame_Shift_Del p.S909Vfs*5 0.23 TCGA-N7-A4Y0-01 8 7308689 7308690 - G SPAG11B Intron 0.39 TCGA-N7-A4Y0-01 8 75944587 75944587 A - CRISPLD1 3'UTR 0.64 TCGA-N7-A4Y0-01 8 7698656 7698656 C T DEFB104A Silent p.N53N 0.15 TCGA-N7-A4Y0-01 8 81553673 81553673 G A ZNF704 Silent p.Y389Y 0.16 TCGA-N7-A4Y0-01 8 87165043 87165043 A G ATP6V0D2 Splice_Site p.X298_splice 0.61 TCGA-N7-A4Y0-01 8 88885771 88885771 C T DCAF4L2 Silent p.L143L 0.67 TCGA-N7-A4Y0-01 8 95264399 95264399 A G GEM Missense_Mutation p.L154P 0.14 deleterious(0) probably_damaging(0.997) TCGA-N7-A4Y0-01 9 100367047 100367047 T C TSTD2 Missense_Mutation p.E405G 0.42 tolerated(0.22) benign(0.011) TCGA-N7-A4Y0-01 9 103108398 103108398 G T TEX10 Missense_Mutation p.L365I 0.18 tolerated(0.06) benign(0.01) TCGA-N7-A4Y0-01 9 114543240 114543240 G A C9orf84 Missense_Mutation p.A12V 0.46 deleterious(0.01) possibly_damaging(0.651) TCGA-N7-A4Y0-01 9 114695179 114695180 - T UGCG Frame_Shift_Ins p.L365Ffs*36 0.14 TCGA-N7-A4Y0-01 9 116356773 116356773 T C RGS3 Silent p.P1048P 0.32 TCGA-N7-A4Y0-01 9 125424190 125424190 C T OR1L1 Silent p.L66L 0.34 TCGA-N7-A4Y0-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.49 TCGA-N7-A4Y0-01 9 130476250 130476250 C T PTRH1 3'UTR 0.37 TCGA-N7-A4Y0-01 9 130860955 130860955 G A SLC25A25 Intron 0.43 TCGA-N7-A4Y0-01 9 131670971 131670971 C T LRRC8A Silent p.L510L 0.44 TCGA-N7-A4Y0-01 9 131709514 131709514 C A DOLK Missense_Mutation p.E23D 0.51 deleterious_low_confidence(0) benign(0.388) TCGA-N7-A4Y0-01 9 132630693 132630693 C A USP20 Missense_Mutation p.P367Q 0.34 tolerated(0.58) possibly_damaging(0.699) TCGA-N7-A4Y0-01 9 134381807 134381807 G A POMT1 Missense_Mutation p.D83N 0.40 tolerated(0.15) probably_damaging(1) TCGA-N7-A4Y0-01 9 134382768 134382768 C T POMT1 Silent p.N98N 0.41 TCGA-N7-A4Y0-01 9 135702409 135702409 C T AK8 Missense_Mutation p.E197K 0.41 tolerated(0.07) possibly_damaging(0.833) TCGA-N7-A4Y0-01 9 136508685 136508685 C A DBH Missense_Mutation p.L299M 0.38 tolerated(0.06) possibly_damaging(0.724) TCGA-N7-A4Y0-01 9 136595269 136595269 G A SARDH Missense_Mutation p.T244M 0.37 tolerated(0.07) possibly_damaging(0.803) TCGA-N7-A4Y0-01 9 136633624 136633626 CAC - VAV2 In_Frame_Del p.V843del 0.41 TCGA-N7-A4Y0-01 9 137687154 137687154 G C COL5A1 Missense_Mutation p.G931A 0.35 unknown(0) TCGA-N7-A4Y0-01 9 138011985 138011985 C T OLFM1 Silent p.N455N 0.34 TCGA-N7-A4Y0-01 9 138392884 138392884 G A MRPS2 Silent p.K28K 0.37 TCGA-N7-A4Y0-01 9 139107074 139107074 G - QSOX2 Frame_Shift_Del p.P429Rfs*11 0.23 TCGA-N7-A4Y0-01 9 139273254 139273254 G T SNAPC4 Missense_Mutation p.L1009M 0.33 tolerated(0.18) possibly_damaging(0.87) TCGA-N7-A4Y0-01 9 139418329 139418329 G A NOTCH1 Silent p.G81G 0.52 TCGA-N7-A4Y0-01 9 139836499 139836499 G A FBXW5 Silent p.I365I 0.29 TCGA-N7-A4Y0-01 9 140243587 140243587 G A EXD3 Missense_Mutation p.A602V 0.42 tolerated(0.45) probably_damaging(0.945) TCGA-N7-A4Y0-01 9 18829843 18829843 C - ADAMTSL1 Frame_Shift_Del p.Q1375Kfs*24 0.41 TCGA-N7-A4Y0-01 9 20758097 20758097 C A FOCAD Missense_Mutation p.P134H 0.38 deleterious(0.02) possibly_damaging(0.682) TCGA-N7-A4Y0-01 9 21141170 21141170 C T IFNW1 Missense_Mutation p.G134R 0.41 deleterious(0.01) benign(0.008) TCGA-N7-A4Y0-01 9 21141286 21141286 C T IFNW1 Missense_Mutation p.R95H 0.39 tolerated(0.2) benign(0.026) TCGA-N7-A4Y0-01 9 33053232 33053232 G A SMU1 Silent p.T393T 0.43 TCGA-N7-A4Y0-01 9 33294897 33294897 A - NFX1 Frame_Shift_Del p.A171Qfs*154 0.29 TCGA-N7-A4Y0-01 9 35105812 35105812 C T FAM214B Missense_Mutation p.V444M 0.36 deleterious(0.01) possibly_damaging(0.459) TCGA-N7-A4Y0-01 9 35555086 35555086 C T RUSC2 Missense_Mutation p.R682C 0.44 deleterious(0) possibly_damaging(0.855) TCGA-N7-A4Y0-01 9 37740148 37740148 C T FRMPD1 Silent p.D541D 0.35 TCGA-N7-A4Y0-01 9 38395909 38395909 C T ALDH1B1 Missense_Mutation p.P55L 0.36 deleterious(0.02) benign(0.023) TCGA-N7-A4Y0-01 9 40701757 40701757 C T SPATA31A3 Silent p.H79H 0.30 TCGA-N7-A4Y0-01 9 43627119 43627119 G A SPATA31A6 Missense_Mutation p.A523V 0.41 tolerated(0.17) possibly_damaging(0.491) TCGA-N7-A4Y0-01 9 5774180 5774180 G T KIAA1432 Missense_Mutation p.E1402D 0.38 tolerated(0.52) benign(0.003) TCGA-N7-A4Y0-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.06 deleterious(0.01) possibly_damaging(0.573) TCGA-N7-A4Y0-01 9 71491650 71491650 C T PIP5K1B Silent p.Y86Y 0.46 TCGA-N7-A4Y0-01 9 75543858 75543858 C T ALDH1A1 Missense_Mutation p.R131H 0.34 deleterious(0.02) benign(0.027) TCGA-N7-A4Y0-01 9 75545849 75545849 C - ALDH1A1 Frame_Shift_Del p.R87Dfs*9 0.38 TCGA-N7-A4Y0-01 9 80343579 80343579 C T GNAQ Missense_Mutation p.R247Q 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-N7-A4Y0-01 9 84607691 84607692 - G SPATA31D1 Frame_Shift_Ins p.N771Efs*30 0.37 TCGA-N7-A4Y0-01 9 8521547 8521547 C T PTPRD Splice_Site p.X231_splice 0.43 TCGA-N7-A4Y0-01 9 85862817 85862817 A G FRMD3 3'UTR 0.38 TCGA-N7-A4Y0-01 9 86900965 86900965 C T SLC28A3 Missense_Mutation p.A448T 0.44 tolerated(0.09) possibly_damaging(0.461) TCGA-N7-A4Y0-01 9 91083304 91083304 G A SPIN1 Missense_Mutation p.D125N 0.40 deleterious(0.02) benign(0.014) TCGA-N7-A4Y0-01 9 91964840 91964840 A G SECISBP2 Missense_Mutation p.R630G 0.45 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 9 94486999 94486999 C T ROR2 Missense_Mutation p.V593M 0.43 tolerated(0.05) benign(0.142) TCGA-N7-A4Y0-01 9 97090907 97090907 C T NUTM2F 5'UTR 0.34 TCGA-N7-A4Y0-01 9 97863932 97863932 T G FANCC 3'UTR 0.36 TCGA-N7-A4Y0-01 9 98208628 98208628 G - PTCH1 3'UTR 0.34 TCGA-N7-A4Y0-01 9 98238411 98238411 C A PTCH1 Nonsense_Mutation p.G545* 0.50 TCGA-N7-A4Y0-01 X 100911796 100911796 G A ARMCX2 Missense_Mutation p.T260I 0.32 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-N7-A4Y0-01 X 103349203 103349203 C A SLC25A53 Missense_Mutation p.Q246H 0.32 tolerated(0.05) benign(0.009) TCGA-N7-A4Y0-01 X 103495020 103495020 C T ESX1 Silent p.P370P 0.41 TCGA-N7-A4Y0-01 X 106184836 106184836 C T MORC4 Missense_Mutation p.R896H 0.33 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y0-01 X 106332030 106332030 T C RBM41 Missense_Mutation p.N188S 0.40 tolerated(0.41) benign(0.304) TCGA-N7-A4Y0-01 X 107420159 107420159 G A COL4A6 Silent p.G867G 0.35 TCGA-N7-A4Y0-01 X 107682677 107682677 G A COL4A6 5'UTR 0.62 TCGA-N7-A4Y0-01 X 109694816 109694816 T C RGAG1 Missense_Mutation p.L324P 0.10 deleterious(0.05) probably_damaging(0.971) TCGA-N7-A4Y0-01 X 114536597 114536597 T C LUZP4 Silent p.A44A 0.35 TCGA-N7-A4Y0-01 X 119660584 119660584 C T CUL4B 3'UTR 0.27 TCGA-N7-A4Y0-01 X 12693029 12693029 T C FRMPD4 Splice_Site p.X156_splice 0.04 TCGA-N7-A4Y0-01 X 132092544 132092544 G A HS6ST2 Silent p.R29R 0.48 TCGA-N7-A4Y0-01 X 135960091 135960091 G A RBMX Missense_Mutation p.S124L 0.42 deleterious(0.04) probably_damaging(0.977) TCGA-N7-A4Y0-01 X 138882232 138882232 C A ATP11C Nonsense_Mutation p.E236* 0.33 TCGA-N7-A4Y0-01 X 150840935 150840935 A C PASD1 Missense_Mutation p.K573T 0.44 deleterious(0.01) possibly_damaging(0.607) TCGA-N7-A4Y0-01 X 150913076 150913076 T C CNGA2 3'UTR 0.36 TCGA-N7-A4Y0-01 X 151123932 151123932 C T GABRE Missense_Mutation p.V349I 0.48 tolerated(1) benign(0.013) TCGA-N7-A4Y0-01 X 151560699 151560699 G A GABRA3 Intron 0.42 TCGA-N7-A4Y0-01 X 151900216 151900216 G A MAGEA12 Silent p.I195I 0.41 TCGA-N7-A4Y0-01 X 151997817 151997817 G A CETN2 Missense_Mutation p.A56V 0.25 tolerated(0.08) benign(0.321) TCGA-N7-A4Y0-01 X 152960290 152960290 C T SLC6A8 Silent p.C571C 0.37 TCGA-N7-A4Y0-01 X 153129471 153129471 G A L1CAM Silent p.G1108G 0.39 TCGA-N7-A4Y0-01 X 153179298 153179298 G A ARHGAP4 Silent p.D396D 0.37 TCGA-N7-A4Y0-01 X 153196294 153196294 A T NAA10 Missense_Mutation p.S131R 0.39 tolerated(0.07) benign(0.039) TCGA-N7-A4Y0-01 X 153588429 153588429 C A FLNA Missense_Mutation p.S1245I 0.45 tolerated(0.51) benign(0.041) TCGA-N7-A4Y0-01 X 153762334 153762334 T C G6PD Missense_Mutation p.N259S 0.35 tolerated(0.37) benign(0.023) TCGA-N7-A4Y0-01 X 215973 215973 G A PLCXD1 Missense_Mutation p.A315T 0.42 tolerated(0.43) benign(0.012) TCGA-N7-A4Y0-01 X 25031207 25031207 G T ARX Missense_Mutation p.A302D 0.42 deleterious(0.01) benign(0.362) TCGA-N7-A4Y0-01 X 2828698 2828698 A G ARSD Splice_Site p.X379_splice 0.08 TCGA-N7-A4Y0-01 X 2854881 2854883 AGA - ARSE In_Frame_Del p.L438del 0.51 TCGA-N7-A4Y0-01 X 30578299 30578299 G T CXorf21 Nonsense_Mutation p.C58* 0.42 TCGA-N7-A4Y0-01 X 47085770 47085770 C T CDK16 Silent p.N369N 0.44 TCGA-N7-A4Y0-01 X 48047159 48047159 T C SSX5 Missense_Mutation p.R200G 0.38 deleterious(0) possibly_damaging(0.7) TCGA-N7-A4Y0-01 X 48652397 48652397 C - GATA1 Frame_Shift_Del p.P358Qfs*74 0.32 TCGA-N7-A4Y0-01 X 50085296 50085296 A G CCNB3 Silent p.Q1204Q 0.41 TCGA-N7-A4Y0-01 X 50659512 50659512 T C BMP15 Missense_Mutation p.Y362H 0.42 deleterious(0) probably_damaging(0.992) TCGA-N7-A4Y0-01 X 53111865 53111865 G - TSPYL2 Frame_Shift_Del p.V64Wfs*83 0.38 TCGA-N7-A4Y0-01 X 53247577 53247577 G T KDM5C Missense_Mutation p.Q78K 0.35 tolerated(0.19) benign(0.277) TCGA-N7-A4Y0-01 X 54948702 54948702 G T TRO Missense_Mutation p.G8V 0.40 deleterious_low_confidence(0) unknown(0) TCGA-N7-A4Y0-01 X 55650057 55650057 A - FOXR2 5'UTR 0.50 TCGA-N7-A4Y0-01 X 57337042 57337042 A G FAAH2 Missense_Mutation p.K98E 0.41 tolerated(0.28) benign(0.015) TCGA-N7-A4Y0-01 X 71787851 71787851 A T HDAC8 Missense_Mutation p.F109I 0.34 deleterious(0.01) possibly_damaging(0.783) TCGA-N7-A4Y0-01 X 73045718 73045718 A - XIST RNA 0.33 TCGA-N7-A4Y0-01 X 73740968 73740968 A G SLC16A2 Missense_Mutation p.S192G 0.47 deleterious(0.04) benign(0.179) TCGA-N7-A4Y0-01 X 73960123 73960123 G A KIAA2022 Silent p.R1423R 0.43 TCGA-N7-A4Y0-01 X 75649801 75649801 A C MAGEE1 Missense_Mutation p.Q493P 0.47 deleterious(0) benign(0.017) TCGA-N7-A4Y0-01 X 76889125 76889125 T C ATRX Missense_Mutation p.N1629D 0.39 probably_damaging(0.999) TCGA-N7-A4Y0-01 X 79973119 79973119 C T BRWD3 Silent p.A728A 0.38 TCGA-N7-A4Y0-01 X 83129489 83129489 A G CYLC1 Silent p.K591K 0.53 TCGA-N7-A4Y0-01 X 84534384 84534384 A C POF1B 3'UTR 0.33 TCGA-N7-A4Y0-01 X 96139445 96139445 G A RPA4 Missense_Mutation p.V46I 0.50 tolerated(1) benign(0) TCGA-N7-A4Y5-01 10 134671235 134671235 C T TTC40 Silent p.A1811A 0.54 TCGA-N7-A4Y5-01 11 122726442 122726442 G A CRTAM Missense_Mutation p.C177Y 0.38 tolerated(0.45) benign(0.063) TCGA-N7-A4Y5-01 11 124006949 124006949 C G VWA5A Missense_Mutation p.I491M 0.39 tolerated(0.11) benign(0.378) TCGA-N7-A4Y5-01 11 4929145 4929145 G C OR51A7 Missense_Mutation p.Q182H 0.34 deleterious(0.01) benign(0.301) TCGA-N7-A4Y5-01 11 57958846 57958846 A G OR9Q2 Missense_Mutation p.K295R 0.40 deleterious(0.04) benign(0.071) TCGA-N7-A4Y5-01 11 64453157 64453157 G A NRXN2 Silent p.N371N 0.49 TCGA-N7-A4Y5-01 11 75439191 75439191 T C MOGAT2 Splice_Site p.X217_splice 0.83 TCGA-N7-A4Y5-01 12 105543428 105543428 C T KIAA1033 Silent p.F850F 0.46 TCGA-N7-A4Y5-01 12 49445979 49445979 G A KMT2D Missense_Mutation p.P496L 0.19 unknown(0) TCGA-N7-A4Y5-01 12 57972082 57972082 T G KIF5A Missense_Mutation p.F832C 0.25 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y5-01 13 23908318 23908318 T C SACS Missense_Mutation p.K3233E 0.34 benign(0.041) TCGA-N7-A4Y5-01 13 31835102 31835102 C T B3GALTL Missense_Mutation p.A160V 0.47 tolerated(0.06) probably_damaging(0.944) TCGA-N7-A4Y5-01 14 20344949 20344949 G T OR4K2 Missense_Mutation p.D175Y 0.35 deleterious(0.01) benign(0.247) TCGA-N7-A4Y5-01 14 23345059 23345059 C G LRP10 Missense_Mutation p.T301S 0.36 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y5-01 15 22332651 22332651 G T RP11-69H14.6 RNA 0.17 TCGA-N7-A4Y5-01 16 3406726 3406726 G A OR2C1 Silent p.P262P 0.27 TCGA-N7-A4Y5-01 16 56718037 56718037 T A MT1X 3'UTR 0.16 TCGA-N7-A4Y5-01 16 67189313 67189313 C T TRADD Silent p.E132E 0.95 TCGA-N7-A4Y5-01 17 26652535 26652535 A C TMEM97 Missense_Mutation p.N45H 0.65 deleterious(0.02) possibly_damaging(0.877) TCGA-N7-A4Y5-01 17 5485302 5485302 G C NLRP1 Missense_Mutation p.P177A 0.41 deleterious(0.02) possibly_damaging(0.862) TCGA-N7-A4Y5-01 17 56434921 56434921 G A RNF43 Missense_Mutation p.P739L 0.35 tolerated_low_confidence(0.06) benign(0.007) TCGA-N7-A4Y5-01 17 7577569 7577569 A G TP53 Missense_Mutation p.C238R 0.86 deleterious(0) probably_damaging(1) TCGA-N7-A4Y5-01 18 47799975 47799975 C G MBD1 Missense_Mutation p.V469L 0.51 deleterious(0.01) possibly_damaging(0.721) TCGA-N7-A4Y5-01 19 10398002 10398002 G C ICAM4 Missense_Mutation p.R105T 0.23 tolerated_low_confidence(0.25) possibly_damaging(0.855) TCGA-N7-A4Y5-01 19 35850158 35850158 G A FFAR3 Nonsense_Mutation p.W122* 0.23 TCGA-N7-A4Y5-01 19 47491244 47491249 AGGACT - ARHGAP35 Splice_Site p.X1276_splice 0.57 TCGA-N7-A4Y5-01 19 58965695 58965695 C T ZNF324B Silent p.Y74Y 0.23 TCGA-N7-A4Y5-01 1 10711029 10711029 G A CASZ1 Missense_Mutation p.R929C 0.30 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-N7-A4Y5-01 1 110754451 110754451 C T KCNC4 Silent p.Y110Y 0.47 TCGA-N7-A4Y5-01 1 173907982 173907982 T C RC3H1 Silent p.T1093T 0.49 TCGA-N7-A4Y5-01 1 190067523 190067523 C T BRINP3 Silent p.E642E 0.95 TCGA-N7-A4Y5-01 1 19018402 19018402 C T PAX7 Silent p.R247R 0.38 TCGA-N7-A4Y5-01 1 228511259 228511259 G A OBSCN Missense_Mutation p.E6159K 0.45 probably_damaging(0.997) TCGA-N7-A4Y5-01 20 9343593 9343593 C T PLCB4 Silent p.N140N 0.53 TCGA-N7-A4Y5-01 21 38390374 38390374 G C RIPPLY3 Missense_Mutation p.G147A 0.47 deleterious(0.01) benign(0.019) TCGA-N7-A4Y5-01 2 101011979 101011979 A G CHST10 Silent p.I175I 0.35 TCGA-N7-A4Y5-01 2 128350403 128350403 G A MYO7B Missense_Mutation p.R676Q 0.20 deleterious(0.05) probably_damaging(0.921) TCGA-N7-A4Y5-01 2 135012115 135012115 C T MGAT5 Silent p.R47R 0.33 TCGA-N7-A4Y5-01 2 192227005 192227005 C G MYO1B Missense_Mutation p.L225V 0.43 deleterious(0) probably_damaging(0.999) TCGA-N7-A4Y5-01 2 215876784 215876784 T G ABCA12 Missense_Mutation p.N678H 0.24 tolerated(0.31) benign(0.009) TCGA-N7-A4Y5-01 2 233346218 233346218 G A ECEL1 Missense_Mutation p.R663W 0.38 deleterious(0.01) possibly_damaging(0.907) TCGA-N7-A4Y5-01 2 238643971 238643971 C G LRRFIP1 Intron 0.24 TCGA-N7-A4Y5-01 2 40342516 40342516 G A SLC8A1 Silent p.I933I 0.29 TCGA-N7-A4Y5-01 2 86302260 86302260 C T POLR1A Missense_Mutation p.G502S 0.60 deleterious(0) probably_damaging(1) TCGA-N7-A4Y5-01 2 98429149 98429149 C G TMEM131 Missense_Mutation p.E561Q 0.38 deleterious(0.04) probably_damaging(0.967) TCGA-N7-A4Y5-01 3 160219825 160219825 T C KPNA4 3'UTR 0.09 TCGA-N7-A4Y5-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.63 deleterious(0.02) probably_damaging(0.984) TCGA-N7-A4Y5-01 3 182597349 182597349 T G ATP11B Missense_Mutation p.L773R 0.65 deleterious(0) probably_damaging(1) TCGA-N7-A4Y5-01 3 48646687 48646687 G C UQCRC1 Missense_Mutation p.Q40E 0.97 tolerated(0.41) benign(0.186) TCGA-N7-A4Y5-01 4 119237434 119237434 G C PRSS12 Missense_Mutation p.R399G 0.38 deleterious(0) probably_damaging(0.954) TCGA-N7-A4Y5-01 4 123855466 123855466 G T SPATA5 Silent p.L240L 0.43 TCGA-N7-A4Y5-01 4 183600828 183600828 G A TENM3 Missense_Mutation p.V446M 0.33 tolerated(0.28) possibly_damaging(0.868) TCGA-N7-A4Y5-01 4 8229382 8229382 G C SH3TC1 Missense_Mutation p.R654P 0.54 deleterious(0.03) possibly_damaging(0.801) TCGA-N7-A4Y5-01 4 85593977 85593977 G A WDFY3 3'UTR 0.29 TCGA-N7-A4Y5-01 5 127670459 127670459 G - FBN2 Frame_Shift_Del p.H1351Tfs*8 0.25 TCGA-N7-A4Y5-01 5 140174613 140174613 G A PCDHA2 Missense_Mutation p.A22T 0.50 tolerated_low_confidence(0.4) benign(0.024) TCGA-N7-A4Y5-01 5 140531787 140531787 G C PCDHB6 Missense_Mutation p.R650P 0.51 deleterious_low_confidence(0.04) benign(0.171) TCGA-N7-A4Y5-01 5 149602124 149602124 G T CAMK2A 3'Flank 0.55 TCGA-N7-A4Y5-01 5 32712485 32712485 A C NPR3 Silent p.A201A 0.16 TCGA-N7-A4Y5-01 5 44305205 44305205 C A FGF10 Silent p.G173G 0.19 TCGA-N7-A4Y5-01 5 58289244 58289244 G C PDE4D Missense_Mutation p.R324G 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-N7-A4Y5-01 6 133136509 133136510 TC - RPS12 Intron 0.19 TCGA-N7-A4Y5-01 6 154360937 154360937 C T OPRM1 Silent p.F179F 0.28 TCGA-N7-A4Y5-01 6 27100294 27100295 - T HIST1H2BJ Frame_Shift_Ins p.S79Yfs*39 0.38 TCGA-N7-A4Y5-01 6 31797282 31797282 G C HSPA1B Missense_Mutation p.V519L 0.27 tolerated_low_confidence(0.18) probably_damaging(0.989) TCGA-N7-A4Y5-01 6 44344811 44344811 G A SPATS1 3'UTR 0.36 TCGA-N7-A4Y5-01 7 130080807 130080807 T C CEP41 Translation_Start_Site p.M1? 0.34 deleterious(0) benign(0.045) TCGA-N7-A4Y5-01 7 142562260 142562260 C A EPHB6 Silent p.A234A 0.33 TCGA-N7-A4Y5-01 7 21789392 21789392 G A DNAH11 Missense_Mutation p.V2931M 0.54 benign(0.173) TCGA-N7-A4Y5-01 7 64167232 64167232 G A ZNF107 Missense_Mutation p.E184K 0.31 deleterious(0.01) benign(0.232) TCGA-N7-A4Y5-01 7 87912423 87912423 G A STEAP4 Missense_Mutation p.L173F 0.49 deleterious(0) possibly_damaging(0.847) TCGA-N7-A4Y5-01 8 142367311 142367311 C T GPR20 Missense_Mutation p.R238Q 0.12 deleterious(0) probably_damaging(0.984) TCGA-N7-A4Y5-01 8 144940592 144940592 C T EPPK1 Missense_Mutation p.R2277H 0.05 benign(0.01) TCGA-N7-A4Y5-01 8 145735980 145735980 G A MFSD3 Splice_Site p.X277_splice 0.51 TCGA-N7-A4Y5-01 8 56270402 56270402 T G XKR4 Missense_Mutation p.I324S 0.13 deleterious(0) possibly_damaging(0.598) TCGA-N7-A4Y5-01 9 129853995 129853995 G A ANGPTL2 Silent p.N412N 0.51 TCGA-N7-A4Y8-01 10 43317508 43317508 A G BMS1 Splice_Site p.X1004_splice 0.22 TCGA-N7-A4Y8-01 11 2186489 2186489 C T TH Missense_Mutation p.S467N 0.06 tolerated(0.08) benign(0.082) TCGA-N7-A4Y8-01 11 50003749 50003749 C A OR4C12 Missense_Mutation p.A97S 0.26 tolerated_low_confidence(0.06) benign(0.118) TCGA-N7-A4Y8-01 11 57413796 57413796 A G YPEL4 Missense_Mutation p.C90R 0.40 deleterious(0) probably_damaging(0.989) TCGA-N7-A4Y8-01 11 65302778 65302778 C T SCYL1 Silent p.A437A 0.18 TCGA-N7-A4Y8-01 11 75438615 75438615 C T MOGAT2 Missense_Mutation p.R136C 0.72 tolerated(0.15) benign(0.013) TCGA-N7-A4Y8-01 12 29494102 29494102 T C ERGIC2 Missense_Mutation p.N374S 0.19 tolerated_low_confidence(0.07) benign(0.024) TCGA-N7-A4Y8-01 12 29624754 29624754 C T OVCH1 Missense_Mutation p.A613T 0.13 tolerated(0.09) possibly_damaging(0.808) TCGA-N7-A4Y8-01 12 56482341 56482341 G T ERBB3 Missense_Mutation p.D297Y 0.27 deleterious(0) probably_damaging(1) TCGA-N7-A4Y8-01 12 6664977 6664977 G A IFFO1 Silent p.N73N 0.17 TCGA-N7-A4Y8-01 13 39603503 39603503 C T PROSER1 Missense_Mutation p.A64T 0.37 deleterious(0) probably_damaging(0.996) TCGA-N7-A4Y8-01 13 47011573 47011573 G A PPP1R2P4 RNA 0.38 TCGA-N7-A4Y8-01 13 99362129 99362129 C T SLC15A1 Missense_Mutation p.G313R 0.39 deleterious(0.03) possibly_damaging(0.769) TCGA-N7-A4Y8-01 14 74407730 74407730 G A FAM161B Silent p.P496P 0.23 TCGA-N7-A4Y8-01 15 41794651 41794651 C G ITPKA Missense_Mutation p.Q354E 0.40 tolerated(0.08) benign(0.143) TCGA-N7-A4Y8-01 16 14980689 14980689 C T NOMO1 Silent p.F1098F 0.34 TCGA-N7-A4Y8-01 16 421904 421904 C T TMEM8A 3'UTR 0.55 TCGA-N7-A4Y8-01 17 263136 263136 G A C17orf97 Missense_Mutation p.E168K 0.71 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-N7-A4Y8-01 17 7577565 7577565 T C TP53 Missense_Mutation p.N239S 0.93 deleterious(0.03) probably_damaging(0.999) TCGA-N7-A4Y8-01 19 18707437 18707437 C T CRLF1 Missense_Mutation p.R340H 0.29 tolerated(0.23) benign(0.004) TCGA-N7-A4Y8-01 19 35176580 35176580 C A ZNF302 3'UTR 0.66 TCGA-N7-A4Y8-01 1 11115122 11115122 G A SRM Missense_Mutation p.P262L 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-N7-A4Y8-01 1 1273765 1273765 C T DVL1 Missense_Mutation p.R439Q 0.28 deleterious(0) probably_damaging(0.947) TCGA-N7-A4Y8-01 1 144931280 144931280 C T PDE4DIP Intron 0.24 TCGA-N7-A4Y8-01 1 204588977 204588977 G A LRRN2 Silent p.R48R 0.22 TCGA-N7-A4Y8-01 1 229568733 229568733 C A ACTA1 Splice_Site p.X43_splice 0.24 TCGA-N7-A4Y8-01 1 240070975 240070975 C T CHRM3 Missense_Mutation p.T75M 0.24 deleterious(0) possibly_damaging(0.551) TCGA-N7-A4Y8-01 1 24998725 24998725 G A SRRM1 Missense_Mutation p.R888H 0.52 unknown(0) TCGA-N7-A4Y8-01 1 44057543 44057543 C A PTPRF Nonsense_Mutation p.S531* 0.51 TCGA-N7-A4Y8-01 1 52272573 52272573 G A NRD1 Missense_Mutation p.T736M 0.22 tolerated(0.08) benign(0.068) TCGA-N7-A4Y8-01 22 50719352 50719360 TGCCGGCCT - PLXNB2 In_Frame_Del p.E1269_I1272delinsV 0.87 TCGA-N7-A4Y8-01 2 102632493 102632493 G C IL1R2 Missense_Mutation p.V165L 0.21 tolerated(1) benign(0.001) TCGA-N7-A4Y8-01 2 55771473 55771473 G C CCDC104 Missense_Mutation p.E299Q 0.43 tolerated(0.28) probably_damaging(0.971) TCGA-N7-A4Y8-01 3 142443429 142443429 G T TRPC1 Missense_Mutation p.D10Y 0.26 deleterious_low_confidence(0) benign(0.001) TCGA-N7-A4Y8-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-N7-A4Y8-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.11 tolerated(0.11) possibly_damaging(0.529) TCGA-N7-A4Y8-01 3 49694637 49694637 C T BSN Missense_Mutation p.R2550C 0.43 unknown(0) TCGA-N7-A4Y8-01 3 98189040 98189041 AA - OR5K1 Frame_Shift_Del p.Q207Rfs*6 0.27 TCGA-N7-A4Y8-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.32 deleterious(0) probably_damaging(1) TCGA-N7-A4Y8-01 4 156135433 156135433 G A NPY2R Silent p.G114G 0.50 TCGA-N7-A4Y8-01 4 62845387 62845387 G A LPHN3 Missense_Mutation p.R903Q 0.51 deleterious(0.01) probably_damaging(0.989) TCGA-N7-A4Y8-01 5 138860776 138860776 A T TMEM173 Missense_Mutation p.S127T 0.46 tolerated(0.21) possibly_damaging(0.702) TCGA-N7-A4Y8-01 5 140257222 140257222 G A PCDHA12 Missense_Mutation p.R722H 0.42 deleterious_low_confidence(0.01) benign(0.15) TCGA-N7-A4Y8-01 5 154299598 154299598 G A GEMIN5 Missense_Mutation p.H510Y 0.47 deleterious(0) benign(0.223) TCGA-N7-A4Y8-01 5 52193289 52193289 C T ITGA1 Missense_Mutation p.T365I 0.50 deleterious(0) probably_damaging(0.998) TCGA-N7-A4Y8-01 6 109815251 109815251 T C AK9 Silent p.L1822L 0.33 TCGA-N7-A4Y8-01 6 17637615 17637615 A C NUP153 Missense_Mutation p.C745G 0.26 deleterious(0) probably_damaging(1) TCGA-N7-A4Y8-01 6 30457613 30457613 A G HLA-E Missense_Mutation p.N59D 0.27 deleterious_low_confidence(0) benign(0.285) TCGA-N7-A4Y8-01 6 50011295 50011295 C T DEFB112 Missense_Mutation p.R112H 0.40 tolerated_low_confidence(0.1) benign(0.001) TCGA-N7-A4Y8-01 7 127958088 127958088 C T RBM28 Silent p.A545A 0.33 TCGA-N7-A4Y8-01 7 148702238 148702238 T C PDIA4 Missense_Mutation p.K506R 0.26 tolerated(0.05) benign(0.031) TCGA-N7-A4Y8-01 7 149497429 149497429 C T SSPO RNA 0.32 TCGA-N7-A4Y8-01 7 73470684 73470684 G A ELN Missense_Mutation p.G412R 0.31 unknown(0) TCGA-N7-A4Y8-01 8 110590123 110590123 C T SYBU Silent p.K286K 0.28 TCGA-N7-A4Y8-01 8 145948368 145948368 C T ZNF251 Missense_Mutation p.R226K 0.50 tolerated(0.43) benign(0.129) TCGA-N7-A4Y8-01 8 32616940 32616940 G T NRG1 Missense_Mutation p.Q354H 0.22 tolerated(0.8) benign(0.144) TCGA-N7-A4Y8-01 9 101748168 101748168 C G COL15A1 Missense_Mutation p.P141R 0.11 deleterious(0.04) benign(0.438) TCGA-N7-A4Y8-01 9 108118561 108118569 CCCTGATCA - SLC44A1 In_Frame_Del p.L191_T193del 0.28 TCGA-N7-A4Y8-01 9 123169430 123169430 C T CDK5RAP2 Missense_Mutation p.S1608N 0.40 deleterious(0) possibly_damaging(0.483) TCGA-N7-A4Y8-01 9 132481518 132481518 C T PRRX2 Missense_Mutation p.P90S 0.56 tolerated(1) benign(0.328) TCGA-N7-A59B-01 10 107015549 107015549 G A SORCS3 Silent p.Q1109Q 0.44 TCGA-N7-A59B-01 10 127414264 127414266 GGA - EDRF1 In_Frame_Del p.G217del 0.43 TCGA-N7-A59B-01 11 587405 587405 G C PHRF1 Missense_Mutation p.G121R 0.22 deleterious(0) probably_damaging(0.994) TCGA-N7-A59B-01 11 60707095 60707095 T A SLC15A3 Missense_Mutation p.E431V 0.32 tolerated(0.25) probably_damaging(0.932) TCGA-N7-A59B-01 12 131781266 131781266 A G AC092850.1 Missense_Mutation p.K109R 0.38 deleterious_low_confidence(0) unknown(0) TCGA-N7-A59B-01 12 80660253 80660253 G A OTOGL Missense_Mutation p.M740I 0.17 deleterious(0.02) possibly_damaging(0.658) TCGA-N7-A59B-01 13 108861426 108861426 T C LIG4 Missense_Mutation p.K731E 0.38 tolerated(1) benign(0) TCGA-N7-A59B-01 13 98829047 98829047 C T RNF113B Silent p.R148R 0.17 TCGA-N7-A59B-01 14 23886383 23886383 G A MYH7 Missense_Mutation p.R1500W 0.92 deleterious(0.01) possibly_damaging(0.86) TCGA-N7-A59B-01 16 84778803 84778803 C - USP10 Frame_Shift_Del p.A239Efs*72 0.49 TCGA-N7-A59B-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.86 deleterious(0.01) possibly_damaging(0.876) TCGA-N7-A59B-01 17 76045946 76045946 G A TNRC6C Missense_Mutation p.G268E 0.20 deleterious(0.04) probably_damaging(1) TCGA-N7-A59B-01 18 34297864 34297864 G A FHOD3 Missense_Mutation p.R693Q 0.44 tolerated(0.09) probably_damaging(0.988) TCGA-N7-A59B-01 19 12501523 12501523 T C ZNF799 Silent p.Q563Q 0.12 TCGA-N7-A59B-01 19 18376865 18376865 G C KIAA1683 Silent p.T495T 0.63 TCGA-N7-A59B-01 19 33687683 33687683 G C LRP3 Missense_Mutation p.A41P 0.39 deleterious(0.05) benign(0.406) TCGA-N7-A59B-01 19 36526381 36526381 G T THAP8 Silent p.A262A 0.18 TCGA-N7-A59B-01 19 39660328 39660328 G C PAK4 Missense_Mutation p.E45D 0.67 tolerated(0.85) benign(0.43) TCGA-N7-A59B-01 19 44591382 44591382 T G ZNF284 Missense_Mutation p.M584R 0.49 deleterious(0) benign(0.002) TCGA-N7-A59B-01 19 54760423 54760423 C T LILRB5 Missense_Mutation p.R95Q 0.45 tolerated(0.32) benign(0.076) TCGA-N7-A59B-01 19 5594052 5594066 CGCTCCCGCTCCATG - SAFB2 In_Frame_Del p.M682_R686del 0.55 TCGA-N7-A59B-01 19 7585559 7585559 A G ZNF358 Silent p.K477K 0.30 TCGA-N7-A59B-01 1 197071386 197071386 C A ASPM Missense_Mutation p.R2332L 0.47 deleterious(0.01) benign(0.258) TCGA-N7-A59B-01 1 227174205 227174205 G A ADCK3 Missense_Mutation p.A571T 0.43 deleterious(0.02) benign(0.158) TCGA-N7-A59B-01 1 62908931 62908931 T A USP1 Missense_Mutation p.N166K 0.44 deleterious(0.01) probably_damaging(0.98) TCGA-N7-A59B-01 1 62910418 62910418 C - USP1 Frame_Shift_Del p.P190Lfs*29 0.29 TCGA-N7-A59B-01 20 31381340 31381340 A G DNMT3B Splice_Site p.X356_splice 0.38 TCGA-N7-A59B-01 2 105859066 105859066 C T GPR45 Missense_Mutation p.R251W 0.51 deleterious(0) probably_damaging(0.988) TCGA-N7-A59B-01 2 11426743 11426743 G C ROCK2 Missense_Mutation p.I82M 0.17 deleterious(0.03) benign(0.007) TCGA-N7-A59B-01 2 33036105 33036105 A T TTC27 Silent p.L671L 0.30 TCGA-N7-A59B-01 3 108373036 108373036 C A DZIP3 Missense_Mutation p.A693E 0.39 tolerated_low_confidence(0.24) benign(0.001) TCGA-N7-A59B-01 3 178916930 178916930 G T PIK3CA Missense_Mutation p.G106V 0.73 deleterious(0.01) probably_damaging(1) TCGA-N7-A59B-01 5 170819814 170819814 T A NPM1 Silent p.V151V 0.36 TCGA-N7-A59B-01 5 172513552 172513552 C G CREBRF Missense_Mutation p.H20D 0.63 deleterious_low_confidence(0.03) benign(0.153) TCGA-N7-A59B-01 5 31464365 31464365 C A DROSHA Missense_Mutation p.G851V 0.36 deleterious(0) probably_damaging(1) TCGA-N7-A59B-01 6 26448652 26448652 A G BTN3A3 Missense_Mutation p.T298A 0.35 tolerated(0.61) benign(0.003) TCGA-N7-A59B-01 6 28333707 28333707 C A ZKSCAN3 Missense_Mutation p.T421N 0.60 deleterious(0) probably_damaging(0.989) TCGA-N7-A59B-01 6 34725706 34725706 G A SNRPC Missense_Mutation p.C9Y 0.33 deleterious(0.01) probably_damaging(1) TCGA-N7-A59B-01 7 139715631 139715631 G A TBXAS1 Nonsense_Mutation p.W492* 0.29 TCGA-N7-A59B-01 7 141756660 141756660 C T MGAM Missense_Mutation p.T1204I 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-N7-A59B-01 7 150648140 150648140 G A KCNH2 Missense_Mutation p.R672C 0.33 deleterious(0) probably_damaging(0.999) TCGA-N7-A59B-01 7 28610154 28610154 G C CREB5 Missense_Mutation p.G155R 0.64 tolerated(0.14) possibly_damaging(0.618) TCGA-N7-A59B-01 8 125082754 125082754 G A FER1L6 Nonsense_Mutation p.W1294* 0.15 TCGA-N7-A59B-01 8 38834215 38834215 T C HTRA4 Missense_Mutation p.I243T 0.45 deleterious(0) probably_damaging(0.909) TCGA-N7-A59B-01 9 107331463 107331463 C T OR13C8 Silent p.N5N 0.91 TCGA-N7-A59B-01 9 35381192 35381192 C T UNC13B Nonsense_Mutation p.Q742* 0.38 TCGA-N7-A59B-01 X 101912152 101912152 C T GPRASP1 Missense_Mutation p.P1104L 0.51 deleterious(0) possibly_damaging(0.754) TCGA-N7-A59B-01 X 152159976 152159976 A T PNMA5 Missense_Mutation p.F56Y 0.36 deleterious(0) probably_damaging(0.972) TCGA-N7-A59B-01 X 18660259 18660259 C T RS1 Silent p.S180S 0.53 TCGA-N7-A59B-01 X 47060923 47060923 T C UBA1 Missense_Mutation p.F242S 0.26 deleterious(0) probably_damaging(0.917) TCGA-N7-A59B-01 X 77224931 77224931 T A PGAM4 Missense_Mutation p.T69S 0.44 tolerated(0.41) benign(0.075) TCGA-N8-A4PI-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.77 TCGA-N8-A4PI-01 11 132180094 132180094 A C NTM Silent p.S250S 0.49 TCGA-N8-A4PI-01 11 46397946 46397946 C T DGKZ Silent p.D908D 0.26 TCGA-N8-A4PI-01 11 48347283 48347283 C G OR4C3 Missense_Mutation p.T264S 0.52 deleterious(0) benign(0.133) TCGA-N8-A4PI-01 11 58920290 58920290 T G FAM111A Missense_Mutation p.C383W 0.13 deleterious(0.02) probably_damaging(1) TCGA-N8-A4PI-01 11 62292206 62292206 A G AHNAK Missense_Mutation p.L3228P 0.60 probably_damaging(0.996) TCGA-N8-A4PI-01 11 65270254 65270254 G A MALAT1 RNA 0.39 TCGA-N8-A4PI-01 12 101295475 101295475 G T ANO4 5'UTR 0.63 TCGA-N8-A4PI-01 12 54645939 54645939 A T CBX5 Nonsense_Mutation p.Y70* 0.18 TCGA-N8-A4PI-01 12 6697558 6697558 A G CHD4 Missense_Mutation p.L1124P 0.22 deleterious(0) benign(0.322) TCGA-N8-A4PI-01 12 6710697 6710697 C T CHD4 Splice_Site p.X186_splice 0.51 TCGA-N8-A4PI-01 12 7966885 7966885 C T SLC2A14 3'UTR 0.18 TCGA-N8-A4PI-01 14 26949251 26949251 C T NOVA1 Missense_Mutation p.V127M 0.19 tolerated(0.21) unknown(0) TCGA-N8-A4PI-01 14 32562648 32562648 C A ARHGAP5 Missense_Mutation p.H925N 0.56 tolerated(0.12) benign(0.379) TCGA-N8-A4PI-01 17 1563260 1563260 C T PRPF8 Silent p.E1607E 0.08 TCGA-N8-A4PI-01 17 44953734 44953734 T A WNT9B Missense_Mutation p.Y242N 0.44 deleterious(0) probably_damaging(0.949) TCGA-N8-A4PI-01 17 70120195 70120195 G A SOX9 Silent p.T399T 0.05 TCGA-N8-A4PI-01 17 7577498 7577498 C T TP53 Splice_Site p.X261_splice 0.33 TCGA-N8-A4PI-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.54 TCGA-N8-A4PI-01 18 48190668 48190668 C T MAPK4 Missense_Mutation p.R114C 0.44 deleterious(0) benign(0.015) TCGA-N8-A4PI-01 18 61067363 61067363 A C VPS4B Missense_Mutation p.I236M 0.52 deleterious(0) possibly_damaging(0.834) TCGA-N8-A4PI-01 19 2934121 2934121 C T ZNF77 Missense_Mutation p.C335Y 0.79 tolerated(1) benign(0.105) TCGA-N8-A4PI-01 19 38976497 38976497 C T RYR1 Silent p.I1734I 0.47 TCGA-N8-A4PI-01 19 5137981 5137981 A C KDM4B Missense_Mutation p.H817P 0.28 possibly_damaging(0.904) TCGA-N8-A4PI-01 19 55112304 55112304 G T LILRA1 3'UTR 0.43 TCGA-N8-A4PI-01 19 56953959 56953959 C G ZNF667 Missense_Mutation p.K135N 0.47 tolerated(0.08) benign(0.31) TCGA-N8-A4PI-01 19 57132633 57132633 C T ZNF71 Intron 0.28 TCGA-N8-A4PI-01 1 117491980 117491980 G A PTGFRN Silent p.R333R 0.43 TCGA-N8-A4PI-01 1 158298715 158298715 G A CD1B Missense_Mutation p.R326C 0.24 deleterious(0.01) possibly_damaging(0.891) TCGA-N8-A4PI-01 1 16357051 16357051 C G CLCNKA Missense_Mutation p.L502V 0.15 tolerated(0.11) possibly_damaging(0.708) TCGA-N8-A4PI-01 1 207679361 207679361 C T CR1 Silent p.S78S 0.10 TCGA-N8-A4PI-01 1 248616839 248616839 G A OR2T2 Missense_Mutation p.M247I 0.23 tolerated(0.34) benign(0.001) TCGA-N8-A4PI-01 1 38265972 38265972 C T MANEAL 3'UTR 0.59 TCGA-N8-A4PI-01 1 55512217 55512217 G A PCSK9 Missense_Mutation p.D141N 0.40 deleterious(0.05) possibly_damaging(0.512) TCGA-N8-A4PI-01 1 85656053 85656053 A G SYDE2 Silent p.P376P 0.29 TCGA-N8-A4PI-01 20 58448922 58448922 G A SYCP2 Missense_Mutation p.P1182S 0.21 tolerated(0.85) benign(0.017) TCGA-N8-A4PI-01 21 47552223 47552223 C T COL6A2 Silent p.H939H 0.38 TCGA-N8-A4PI-01 2 27801239 27801239 C T C2orf16 Silent p.I600I 0.38 TCGA-N8-A4PI-01 2 55792098 55792098 A T SMEK2 Missense_Mutation p.F672Y 0.29 deleterious(0.01) benign(0.213) TCGA-N8-A4PI-01 2 99778887 99778887 T C LIPT1 Missense_Mutation p.L156P 0.14 deleterious(0) probably_damaging(0.995) TCGA-N8-A4PI-01 3 121260219 121260219 T A POLQ Nonsense_Mutation p.K151* 0.46 TCGA-N8-A4PI-01 3 121724124 121724124 C T ILDR1 Missense_Mutation p.D116N 0.33 deleterious(0) probably_damaging(0.989) TCGA-N8-A4PI-01 3 136323151 136323151 C T STAG1 Silent p.Q99Q 0.45 TCGA-N8-A4PI-01 3 35778809 35778809 G A ARPP21 Silent p.Q499Q 0.42 TCGA-N8-A4PI-01 3 40286039 40286039 G A MYRIP Missense_Mutation p.A735T 0.47 tolerated(0.05) probably_damaging(0.938) TCGA-N8-A4PI-01 3 47452431 47452431 C G PTPN23 Missense_Mutation p.P1048R 0.44 benign(0.362) TCGA-N8-A4PI-01 4 120213506 120213506 G A USP53 Missense_Mutation p.E788K 0.46 tolerated_low_confidence(0.06) possibly_damaging(0.735) TCGA-N8-A4PI-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.44 deleterious(0) probably_damaging(1) TCGA-N8-A4PI-01 4 48385799 48385799 C A SLAIN2 Missense_Mutation p.A453D 0.32 deleterious(0.05) benign(0.307) TCGA-N8-A4PI-01 4 66356251 66356251 G A EPHA5 Missense_Mutation p.P416S 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-N8-A4PI-01 5 13865875 13865875 G T DNAH5 Nonsense_Mutation p.Y1419* 0.50 TCGA-N8-A4PI-01 5 176832137 176832137 T C F12 Missense_Mutation p.I149M 0.33 tolerated(0.23) benign(0.068) TCGA-N8-A4PI-01 5 177156485 177156485 C G FAM153A Splice_Site p.X234_splice 0.17 TCGA-N8-A4PI-01 5 67589269 67589270 - T PIK3R1 Frame_Shift_Ins p.L420Ffs*22 0.26 TCGA-N8-A4PI-01 5 67589588 67589620 GAATATAACACTCAGTTTCAAGAAAAAAGTCGA - PIK3R1 In_Frame_Del p.N453_Y463del 0.26 TCGA-N8-A4PI-01 6 26033580 26033580 C T HIST1H2AB Missense_Mutation p.D73N 0.49 deleterious_low_confidence(0) benign(0.338) TCGA-N8-A4PI-01 7 135080618 135080618 C T CNOT4 Silent p.T299T 0.26 TCGA-N8-A4PI-01 7 150269308 150269308 C T GIMAP4 Silent p.I50I 0.38 TCGA-N8-A4PI-01 8 1871979 1871979 G A ARHGEF10 Silent p.T809T 0.19 TCGA-N8-A4PI-01 8 65527731 65527731 C T CYP7B1 Nonsense_Mutation p.W303* 0.08 TCGA-N8-A4PI-01 9 139726296 139726296 C A RABL6 Missense_Mutation p.F194L 0.45 tolerated(0.52) benign(0.054) TCGA-N8-A4PI-01 9 90584735 90584735 G A CDK20 Silent p.G221G 0.47 TCGA-N8-A4PI-01 X 118109480 118109480 T G LONRF3 Missense_Mutation p.L246R 1.00 deleterious(0) possibly_damaging(0.548) TCGA-N8-A4PL-01 10 106059159 106059159 A G GSTO2 3'UTR 0.42 TCGA-N8-A4PL-01 10 94369210 94369210 A C KIF11 Missense_Mutation p.L214F 0.08 deleterious(0) probably_damaging(1) TCGA-N8-A4PL-01 11 13393792 13393792 C T ARNTL Silent p.D300D 0.95 TCGA-N8-A4PL-01 11 134253812 134253812 G A B3GAT1 Missense_Mutation p.P128L 0.69 tolerated(0.19) benign(0.005) TCGA-N8-A4PL-01 11 18503375 18503375 A T TSG101 Missense_Mutation p.D295E 0.56 tolerated(0.86) possibly_damaging(0.907) TCGA-N8-A4PL-01 11 62300151 62300151 C T AHNAK Missense_Mutation p.A580T 0.89 benign(0.047) TCGA-N8-A4PL-01 11 6236077 6236077 G T FAM160A2 Missense_Mutation p.N774K 0.96 deleterious(0) possibly_damaging(0.732) TCGA-N8-A4PL-01 12 120903456 120903456 C T SRSF9 Missense_Mutation p.R108K 0.20 tolerated(0.05) possibly_damaging(0.589) TCGA-N8-A4PL-01 12 19615449 19615449 G A AEBP2 Missense_Mutation p.S226N 0.41 deleterious_low_confidence(0.03) benign(0.091) TCGA-N8-A4PL-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.90 deleterious(0.02) possibly_damaging(0.773) TCGA-N8-A4PL-01 12 6646101 6646101 A C GAPDH Missense_Mutation p.K84N 0.47 tolerated_low_confidence(1) possibly_damaging(0.599) TCGA-N8-A4PL-01 12 6666174 6666174 C G NOP2 Missense_Mutation p.Q841H 0.51 tolerated_low_confidence(0.12) benign(0.004) TCGA-N8-A4PL-01 12 7064144 7064145 - GGTCAT PTPN6 In_Frame_Ins p.V169_M170dup 0.36 TCGA-N8-A4PL-01 13 101707595 101707595 A T NALCN 3'UTR 0.25 TCGA-N8-A4PL-01 13 109793236 109793236 C T MYO16 Missense_Mutation p.P1537L 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-N8-A4PL-01 13 67802394 67802394 G A PCDH9 Missense_Mutation p.A60V 0.25 tolerated(0.18) benign(0.077) TCGA-N8-A4PL-01 14 24709663 24709663 C T TINF2 Silent p.K341K 0.55 TCGA-N8-A4PL-01 16 4949275 4949275 G A PPL Silent p.Y239Y 0.31 TCGA-N8-A4PL-01 16 72821810 72821810 G - ZFHX3 Frame_Shift_Del p.F3456Sfs*29 0.46 TCGA-N8-A4PL-01 17 10304252 10304252 C T MYH8 Silent p.L1093L 0.24 TCGA-N8-A4PL-01 17 18565523 18565523 A C ZNF286B Missense_Mutation p.I432M 0.44 deleterious(0) probably_damaging(0.979) TCGA-N8-A4PL-01 17 67008130 67008130 A G ABCA9 Missense_Mutation p.I1045T 0.54 tolerated(0.08) benign(0.363) TCGA-N8-A4PL-01 17 6900279 6900279 G A ALOX12 Silent p.A90A 0.31 TCGA-N8-A4PL-01 17 71346393 71346393 C G SDK2 Missense_Mutation p.K2007N 0.29 deleterious(0) probably_damaging(0.999) TCGA-N8-A4PL-01 17 74079821 74079821 C T EXOC7 Missense_Mutation p.V706M 0.82 tolerated(0.12) benign(0.095) TCGA-N8-A4PL-01 17 7578203 7578203 C A TP53 Missense_Mutation p.V216L 0.37 deleterious(0) probably_damaging(0.998) TCGA-N8-A4PL-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.55 deleterious(0) probably_damaging(1) TCGA-N8-A4PL-01 19 15760898 15760898 C T CYP4F3 Missense_Mutation p.R275C 0.47 deleterious(0.04) benign(0.287) TCGA-N8-A4PL-01 19 52715971 52715971 C G PPP2R1A Missense_Mutation p.P179R 0.38 deleterious(0) probably_damaging(0.997) TCGA-N8-A4PL-01 19 57326398 57326398 G A PEG3 Missense_Mutation p.R1138W 0.39 deleterious(0) probably_damaging(0.945) TCGA-N8-A4PL-01 1 151205104 151205104 C T PIP5K1A Silent p.D188D 0.19 TCGA-N8-A4PL-01 1 161019440 161019440 G T ARHGAP30 Missense_Mutation p.A487E 0.18 deleterious(0) benign(0.005) TCGA-N8-A4PL-01 1 172628235 172628235 T C FASLG 5'UTR 0.62 TCGA-N8-A4PL-01 1 185268857 185268857 C T IVNS1ABP Missense_Mutation p.V554M 0.18 deleterious(0.04) possibly_damaging(0.794) TCGA-N8-A4PL-01 1 202245457 202245457 C G LGR6 Missense_Mutation p.S151C 0.18 deleterious(0) probably_damaging(0.995) TCGA-N8-A4PL-01 1 216246463 216246463 C T USH2A Missense_Mutation p.E1918K 0.47 possibly_damaging(0.536) TCGA-N8-A4PL-01 1 22073590 22073590 A G USP48 Silent p.L321L 0.22 TCGA-N8-A4PL-01 1 24119221 24119226 GTGTCT - LYPLA2 In_Frame_Del p.V17_S18del 0.24 TCGA-N8-A4PL-01 1 47533227 47533227 T A CYP4Z1 Missense_Mutation p.M22K 0.53 deleterious(0) benign(0.002) TCGA-N8-A4PL-01 2 130832627 130832627 G A POTEF Silent p.T806T 0.13 TCGA-N8-A4PL-01 2 179213992 179213992 C A OSBPL6 Silent p.S368S 0.47 TCGA-N8-A4PL-01 2 219612366 219612366 C T TTLL4 Missense_Mutation p.R766W 0.21 deleterious(0) probably_damaging(1) TCGA-N8-A4PL-01 2 231265024 231265024 C T SP140L Intron 0.43 TCGA-N8-A4PL-01 3 12858734 12858734 G C CAND2 Missense_Mutation p.R768P 0.37 tolerated(0.29) benign(0.422) TCGA-N8-A4PL-01 4 126329626 126329626 C T FAT4 Missense_Mutation p.T1866M 0.33 probably_damaging(0.953) TCGA-N8-A4PL-01 4 20760463 20760463 C T KCNIP4 Silent p.S113S 0.19 TCGA-N8-A4PL-01 4 3475359 3475359 C T DOK7 Silent p.G109G 0.50 TCGA-N8-A4PL-01 4 6064099 6064099 G A JAKMIP1 Silent p.R500R 0.49 TCGA-N8-A4PL-01 5 140475626 140475626 G A PCDHB2 Missense_Mutation p.E418K 0.23 deleterious_low_confidence(0.03) benign(0.262) TCGA-N8-A4PL-01 5 141052393 141052393 G A ARAP3 Missense_Mutation p.T398M 0.54 tolerated(0.1) possibly_damaging(0.891) TCGA-N8-A4PL-01 5 150646988 150646988 C T GM2A Silent p.I186I 0.18 TCGA-N8-A4PL-01 6 24473848 24473848 A G GPLD1 Silent p.F163F 0.45 TCGA-N8-A4PL-01 6 29012269 29012269 C T OR2W1 Silent p.T228T 0.29 TCGA-N8-A4PL-01 6 44272877 44272877 G A AARS2 Missense_Mutation p.A498V 0.25 deleterious(0.02) benign(0.342) TCGA-N8-A4PL-01 7 48016344 48016344 C A HUS1 Missense_Mutation p.V150L 0.33 tolerated(0.32) benign(0) TCGA-N8-A4PL-01 8 142175305 142175305 C T DENND3 Silent p.F410F 0.46 TCGA-N8-A4PL-01 8 67834725 67834725 A C MCMDC2 3'Flank 0.19 TCGA-N8-A4PL-01 8 70744166 70744166 G A SLCO5A1 Missense_Mutation p.P248L 0.67 tolerated(0.05) benign(0.1) TCGA-N8-A4PL-01 8 92346559 92346559 C A SLC26A7 Silent p.R227R 0.26 TCGA-N8-A4PL-01 8 95262747 95262747 C T GEM Missense_Mutation p.V228M 0.19 deleterious(0) probably_damaging(0.99) TCGA-N8-A4PL-01 9 139257510 139257510 C T DNLZ Missense_Mutation p.C100Y 0.37 deleterious(0) probably_damaging(1) TCGA-N8-A4PL-01 9 18635979 18635979 C A ADAMTSL1 Missense_Mutation p.H214N 0.57 tolerated(1) possibly_damaging(0.844) TCGA-N8-A4PM-01 10 123844141 123844141 G T TACC2 Missense_Mutation p.R709I 0.61 possibly_damaging(0.859) TCGA-N8-A4PM-01 10 46322004 46322004 G A AGAP4 Missense_Mutation p.R451C 0.14 tolerated(0.08) benign(0.151) TCGA-N8-A4PM-01 10 75597241 75597241 C T CAMK2G Silent p.S325S 0.57 TCGA-N8-A4PM-01 10 82187209 82187209 G T FAM213A Missense_Mutation p.G178V 0.30 deleterious(0) probably_damaging(1) TCGA-N8-A4PM-01 11 33047304 33047304 G A DEPDC7 Missense_Mutation p.R58H 0.58 tolerated(1) benign(0.001) TCGA-N8-A4PM-01 11 55110833 55110833 T C OR4A16 Silent p.L53L 0.22 TCGA-N8-A4PM-01 11 62293943 62293943 G T AHNAK Missense_Mutation p.P2649H 0.16 probably_damaging(0.987) TCGA-N8-A4PM-01 11 64111779 64111779 C A CCDC88B Missense_Mutation p.P589Q 0.46 tolerated_low_confidence(0.22) benign(0.078) TCGA-N8-A4PM-01 11 65792758 65792758 G A CATSPER1 Missense_Mutation p.R365W 0.47 deleterious(0.02) benign(0.015) TCGA-N8-A4PM-01 11 76234280 76234280 C T C11orf30 Missense_Mutation p.T589M 0.46 deleterious(0) probably_damaging(0.985) TCGA-N8-A4PM-01 11 88027241 88027241 C T CTSC Missense_Mutation p.R442H 0.44 deleterious(0.01) possibly_damaging(0.903) TCGA-N8-A4PM-01 11 92531160 92531160 G A FAT3 Missense_Mutation p.V1661I 0.24 benign(0.027) TCGA-N8-A4PM-01 12 53606944 53606944 G A RARG Missense_Mutation p.R368W 0.43 deleterious(0) probably_damaging(1) TCGA-N8-A4PM-01 12 6700638 6700638 A G CHD4 Missense_Mutation p.F1112L 0.49 deleterious(0) possibly_damaging(0.787) TCGA-N8-A4PM-01 12 81111292 81111292 A T MYF5 Silent p.G150G 0.40 TCGA-N8-A4PM-01 13 101315367 101315367 T C TMTC4 Missense_Mutation p.S135G 0.26 tolerated(0.76) benign(0) TCGA-N8-A4PM-01 13 113777240 113777240 G A F10 Splice_Site p.X24_splice 0.66 TCGA-N8-A4PM-01 13 36686233 36686233 G A DCLK1 Silent p.L166L 0.50 TCGA-N8-A4PM-01 13 97639792 97639792 G A OXGR1 Silent p.N74N 0.45 TCGA-N8-A4PM-01 14 69257046 69257073 TCACCCTTGAGGCTGCTGAGGAGCTGGT - ZFP36L1 Frame_Shift_Del p.N65Sfs*6 0.47 TCGA-N8-A4PM-01 14 91142978 91142978 C A TTC7B Missense_Mutation p.R347S 0.46 deleterious(0) probably_damaging(0.996) TCGA-N8-A4PM-01 15 23006811 23006811 A G NIPA2 Silent p.L165L 0.22 TCGA-N8-A4PM-01 15 23931940 23931940 C T NDN Missense_Mutation p.R142H 0.57 deleterious(0.01) probably_damaging(0.987) TCGA-N8-A4PM-01 15 25332840 25332840 T A SNORD116-20 RNA 0.09 TCGA-N8-A4PM-01 15 64021494 64021494 C T HERC1 Missense_Mutation p.R1032H 0.19 benign(0.265) TCGA-N8-A4PM-01 15 84257518 84257518 C A SH3GL3 Missense_Mutation p.T278K 0.58 tolerated(0.34) benign(0.039) TCGA-N8-A4PM-01 16 1962039 1962039 G A HS3ST6 Missense_Mutation p.T163M 0.48 deleterious(0.02) possibly_damaging(0.45) TCGA-N8-A4PM-01 16 67680200 67680200 C T RLTPR Missense_Mutation p.R121C 0.34 tolerated(0.09) benign(0.001) TCGA-N8-A4PM-01 17 42636256 42636256 C G FZD2 Silent p.G400G 0.92 TCGA-N8-A4PM-01 17 7579324 7579325 AG - TP53 Frame_Shift_Del p.S121Cfs*27 0.52 TCGA-N8-A4PM-01 17 915093 915093 G T ABR Missense_Mutation p.F698L 0.39 deleterious(0.03) benign(0.008) TCGA-N8-A4PM-01 18 6965302 6965302 G A LAMA1 Nonsense_Mutation p.R2394* 0.53 TCGA-N8-A4PM-01 18 9281098 9281098 G T ANKRD12 Missense_Mutation p.D2055Y 0.40 deleterious(0) probably_damaging(1) TCGA-N8-A4PM-01 19 14707736 14707736 G T CLEC17A Missense_Mutation p.C165F 0.54 tolerated(0.66) benign(0.003) TCGA-N8-A4PM-01 19 41848131 41848131 A C TGFB1 Missense_Mutation p.L219R 0.59 deleterious(0) probably_damaging(0.966) TCGA-N8-A4PM-01 19 47423882 47423882 T - ARHGAP35 Frame_Shift_Del p.F651Sfs*24 0.33 TCGA-N8-A4PM-01 19 55174422 55174422 C T LILRB4 5'UTR 0.47 TCGA-N8-A4PM-01 19 56466006 56466006 G A NLRP8 Silent p.L194L 0.54 TCGA-N8-A4PM-01 1 11589625 11589625 C T PTCHD2 Silent p.F937F 0.26 TCGA-N8-A4PM-01 1 11985518 11985518 C A KIAA2013 Silent p.V259V 0.53 TCGA-N8-A4PM-01 1 154493952 154493952 G A TDRD10 Silent p.P122P 0.46 TCGA-N8-A4PM-01 1 62586895 62586895 G A INADL Missense_Mutation p.A1645T 0.47 tolerated(0.16) benign(0.008) TCGA-N8-A4PM-01 20 30354424 30354424 G T TPX2 Missense_Mutation p.A99S 0.26 tolerated(0.53) benign(0.001) TCGA-N8-A4PM-01 2 102805588 102805588 T C IL1RL2 Silent p.P37P 0.44 TCGA-N8-A4PM-01 2 179702420 179702420 G A CCDC141 Nonsense_Mutation p.R1176* 0.39 TCGA-N8-A4PM-01 2 207175965 207175965 A T ZDBF2 Missense_Mutation p.Y2238F 0.41 tolerated(0.06) benign(0.009) TCGA-N8-A4PM-01 2 33952656 33952656 C T AC009499.1 Intron 0.52 TCGA-N8-A4PM-01 3 105260603 105260603 G T ALCAM Missense_Mutation p.V329F 0.64 deleterious(0) probably_damaging(0.986) TCGA-N8-A4PM-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.50 tolerated(0.11) possibly_damaging(0.529) TCGA-N8-A4PM-01 3 196094903 196094903 C T UBXN7 Missense_Mutation p.R277H 0.51 deleterious(0.01) benign(0.121) TCGA-N8-A4PM-01 4 153244092 153244092 G A FBXW7 Missense_Mutation p.R689W 0.46 deleterious(0) probably_damaging(0.999) TCGA-N8-A4PM-01 4 3432185 3432185 G A RGS12 Missense_Mutation p.R1206H 0.29 deleterious(0) probably_damaging(1) TCGA-N8-A4PM-01 5 140209120 140209120 G A PCDHA6 Missense_Mutation p.A482T 0.43 deleterious_low_confidence(0.02) benign(0.428) TCGA-N8-A4PM-01 5 140215891 140215891 C T PCDHA7 Silent p.D641D 0.20 TCGA-N8-A4PM-01 5 140741505 140741505 C T PCDHGB2 Silent p.N601N 0.43 TCGA-N8-A4PM-01 5 33658404 33658404 C T ADAMTS12 Missense_Mutation p.E359K 0.05 deleterious(0) probably_damaging(0.986) TCGA-N8-A4PM-01 5 5200325 5200325 G A ADAMTS16 Missense_Mutation p.R465H 0.65 tolerated(0.49) benign(0.004) TCGA-N8-A4PM-01 5 65370850 65370850 A G ERBB2IP Splice_Site p.X1260_splice 0.63 TCGA-N8-A4PM-01 6 31237836 31237836 T C HLA-C Missense_Mutation p.I308V 0.28 tolerated_low_confidence(0.06) benign(0.158) TCGA-N8-A4PM-01 7 128806668 128806668 A T TSPAN33 Missense_Mutation p.Y170F 0.58 deleterious(0) probably_damaging(1) TCGA-N8-A4PM-01 7 142641781 142641781 G A KEL Silent p.L454L 0.26 TCGA-N8-A4PM-01 7 62752538 62752538 G T ZNF733P RNA 0.31 TCGA-N8-A4PM-01 9 35660818 35660818 T C CCDC107 Silent p.D162D 0.41 TCGA-N8-A4PM-01 9 88938512 88938512 C T ZCCHC6 Missense_Mutation p.S718N 0.24 tolerated_low_confidence(0.25) benign(0.002) TCGA-N8-A4PM-01 X 69489951 69489951 C T ARR3 Silent p.D34D 0.86 TCGA-N8-A4PN-01 10 114919686 114919686 C T TCF7L2 Intron 0.53 TCGA-N8-A4PN-01 10 17130272 17130272 C T CUBN Missense_Mutation p.G613E 0.09 deleterious(0.05) benign(0.329) TCGA-N8-A4PN-01 10 5471142 5471142 C G NET1 Missense_Mutation p.R69G 0.05 deleterious(0) possibly_damaging(0.78) TCGA-N8-A4PN-01 10 73767358 73767358 A T CHST3 Missense_Mutation p.D190V 0.17 deleterious(0) probably_damaging(1) TCGA-N8-A4PN-01 11 130289058 130289058 C T ADAMTS8 Missense_Mutation p.D284N 0.15 tolerated(0.21) probably_damaging(0.909) TCGA-N8-A4PN-01 11 55798810 55798810 G T OR5AS1 Nonsense_Mutation p.E306* 0.21 TCGA-N8-A4PN-01 11 70505948 70505948 C G SHANK2 Silent p.G683G 0.16 TCGA-N8-A4PN-01 11 87882875 87882875 C T RAB38 Missense_Mutation p.G151S 0.16 deleterious(0.05) probably_damaging(1) TCGA-N8-A4PN-01 12 40760879 40760879 G A LRRK2 Missense_Mutation p.E2488K 0.39 deleterious(0.04) benign(0.016) TCGA-N8-A4PN-01 12 44124455 44124455 T C PUS7L Silent p.V610V 0.46 TCGA-N8-A4PN-01 12 99106175 99106175 C T APAF1 Nonsense_Mutation p.Q974* 0.53 TCGA-N8-A4PN-01 13 103698525 103698525 C T SLC10A2 Silent p.S335S 0.45 TCGA-N8-A4PN-01 15 75014760 75014760 C T CYP1A1 Missense_Mutation p.V227M 0.15 deleterious(0.03) benign(0.152) TCGA-N8-A4PN-01 16 22278135 22278135 G A EEF2K Missense_Mutation p.V568M 0.22 deleterious(0.01) possibly_damaging(0.828) TCGA-N8-A4PN-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.87 deleterious(0) probably_damaging(1) TCGA-N8-A4PN-01 18 44555262 44555262 C T TCEB3C Missense_Mutation p.A318T 0.08 deleterious(0.02) probably_damaging(0.985) TCGA-N8-A4PN-01 18 60609112 60609112 T A PHLPP1 Missense_Mutation p.L1041H 0.50 deleterious(0) probably_damaging(1) TCGA-N8-A4PN-01 18 641365 641365 G A CLUL1 Missense_Mutation p.E345K 0.48 deleterious(0.04) benign(0.306) TCGA-N8-A4PN-01 19 10800296 10800296 G C ILF3 3'UTR 0.32 TCGA-N8-A4PN-01 19 39198795 39198795 G A ACTN4 Missense_Mutation p.R204Q 0.31 deleterious(0) probably_damaging(0.99) TCGA-N8-A4PN-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.30 deleterious(0) probably_damaging(1) TCGA-N8-A4PN-01 19 9012504 9012504 C A MUC16 Missense_Mutation p.G12901V 0.26 probably_damaging(0.999) TCGA-N8-A4PN-01 1 158621165 158621165 T A SPTA1 Missense_Mutation p.I1157F 0.39 deleterious(0.01) possibly_damaging(0.649) TCGA-N8-A4PN-01 1 171958171 171958172 - A DNM3 Frame_Shift_Ins p.M159Nfs*22 0.33 TCGA-N8-A4PN-01 1 216390848 216390848 G A USH2A Missense_Mutation p.T1013I 0.51 probably_damaging(0.953) TCGA-N8-A4PN-01 1 237886488 237886488 G T RYR2 Missense_Mutation p.D3539Y 0.24 benign(0.035) TCGA-N8-A4PN-01 1 24147025 24147025 G C HMGCL Missense_Mutation p.P40R 0.28 deleterious(0) probably_damaging(0.993) TCGA-N8-A4PN-01 1 25627530 25627530 G A RHD Missense_Mutation p.G194R 0.51 tolerated(0.38) benign(0.008) TCGA-N8-A4PN-01 1 33333378 33333378 C T FNDC5 Missense_Mutation p.V84I 0.63 deleterious(0.04) benign(0.13) TCGA-N8-A4PN-01 1 54681910 54681910 G A MRPL37 Missense_Mutation p.D363N 0.38 deleterious(0.03) benign(0.425) TCGA-N8-A4PN-01 20 61875393 61875393 G A NKAIN4 Missense_Mutation p.T172M 0.08 tolerated(0.17) possibly_damaging(0.474) TCGA-N8-A4PN-01 22 41077056 41077056 C T MCHR1 Silent p.I131I 0.26 TCGA-N8-A4PN-01 22 41923520 41923520 T C POLR3H 3'UTR 0.62 TCGA-N8-A4PN-01 2 135745259 135745259 G A MAP3K19 Nonsense_Mutation p.Q395* 0.20 TCGA-N8-A4PN-01 2 189854844 189854844 G A COL3A1 Missense_Mutation p.R238Q 0.28 unknown(0) TCGA-N8-A4PN-01 2 210557510 210557510 A C MAP2 Missense_Mutation p.T206P 0.34 deleterious_low_confidence(0) benign(0.421) TCGA-N8-A4PN-01 2 74604816 74604816 G A DCTN1 Missense_Mutation p.P106L 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-N8-A4PN-01 3 172835309 172835309 T A SPATA16 Missense_Mutation p.E71D 0.12 tolerated(0.09) benign(0.388) TCGA-N8-A4PN-01 3 194081584 194081584 C T LRRC15 Silent p.T69T 0.31 TCGA-N8-A4PN-01 3 35729358 35729358 T C ARPP21 Missense_Mutation p.I130T 0.39 tolerated(0.32) benign(0.268) TCGA-N8-A4PN-01 3 38050773 38050773 G A PLCD1 Silent p.L553L 0.17 TCGA-N8-A4PN-01 3 48613108 48613108 C T COL7A1 Missense_Mutation p.R1977H 0.19 unknown(0) TCGA-N8-A4PN-01 3 56779411 56779411 T C ARHGEF3 Missense_Mutation p.D263G 0.30 deleterious(0) possibly_damaging(0.816) TCGA-N8-A4PN-01 4 122590823 122590823 A C ANXA5 Missense_Mutation p.I279M 0.31 deleterious(0.01) benign(0.281) TCGA-N8-A4PN-01 4 125591785 125591785 G T ANKRD50 Missense_Mutation p.P883T 0.21 deleterious(0.01) possibly_damaging(0.562) TCGA-N8-A4PN-01 4 149356963 149356963 A G NR3C2 Silent p.A350A 0.26 TCGA-N8-A4PN-01 4 153250867 153250867 G A FBXW7 Missense_Mutation p.S398F 0.68 deleterious(0) probably_damaging(1) TCGA-N8-A4PN-01 4 1808660 1808660 A T FGFR3 Missense_Mutation p.D760V 0.24 deleterious(0) probably_damaging(0.972) TCGA-N8-A4PN-01 4 2930259 2930259 C T ADD1 3'UTR 0.23 TCGA-N8-A4PN-01 4 4204203 4204203 G C OTOP1 Missense_Mutation p.I234M 0.25 tolerated(0.06) benign(0.213) TCGA-N8-A4PN-01 4 84348767 84348767 G A HELQ Silent p.P875P 0.59 TCGA-N8-A4PN-01 5 167379743 167379743 C A TENM2 Missense_Mutation p.A288E 0.29 deleterious(0.02) possibly_damaging(0.787) TCGA-N8-A4PN-01 5 67589585 67589586 - ATG PIK3R1 In_Frame_Ins p.H450_E451insD 0.59 TCGA-N8-A4PN-01 6 168344722 168344722 C G MLLT4 Missense_Mutation p.S1107C 0.21 deleterious(0) probably_damaging(0.993) TCGA-N8-A4PN-01 6 33135298 33135298 C T COL11A2 Missense_Mutation p.A1257T 0.42 unknown(0) TCGA-N8-A4PN-01 6 83896756 83896756 C T PGM3 Missense_Mutation p.G171D 0.38 deleterious(0) probably_damaging(1) TCGA-N8-A4PN-01 9 77407599 77407599 A C TRPM6 Missense_Mutation p.W827G 0.45 tolerated(0.54) benign(0.002) TCGA-N8-A4PN-01 X 30236898 30236898 C A MAGEB2 Silent p.T67T 0.36 TCGA-N8-A4PN-01 X 44922731 44922731 C T KDM6A Missense_Mutation p.S531L 0.48 deleterious(0) benign(0.175) TCGA-N8-A4PN-01 X 63410058 63410058 G A AMER1 Nonsense_Mutation p.Q1037* 0.12 TCGA-N8-A4PO-01 10 119027213 119027213 C A SLC18A2 Silent p.L384L 0.27 TCGA-N8-A4PO-01 10 30986359 30986359 G T SVILP1 RNA 0.09 TCGA-N8-A4PO-01 10 74096299 74096299 C T DNAJB12 Nonsense_Mutation p.W364* 0.31 TCGA-N8-A4PO-01 10 78709043 78709043 C A KCNMA1 Missense_Mutation p.G839C 0.08 deleterious(0) probably_damaging(1) TCGA-N8-A4PO-01 11 117152658 117152658 C T RNF214 Missense_Mutation p.R462W 0.39 deleterious(0) probably_damaging(1) TCGA-N8-A4PO-01 11 48511046 48511046 C A OR4A47 Silent p.A234A 0.07 TCGA-N8-A4PO-01 11 72552578 72552578 G A FCHSD2 Silent p.Y659Y 0.72 TCGA-N8-A4PO-01 12 109494590 109494590 A C USP30 Silent p.R63R 0.21 TCGA-N8-A4PO-01 12 126138685 126138685 T C TMEM132B Missense_Mutation p.V889A 0.08 tolerated(0.45) benign(0.017) TCGA-N8-A4PO-01 12 48132985 48132985 C T RAPGEF3 Missense_Mutation p.R801Q 0.22 deleterious(0) probably_damaging(1) TCGA-N8-A4PO-01 12 49442982 49442982 G A KMT2D Missense_Mutation p.P1309L 0.38 probably_damaging(0.999) TCGA-N8-A4PO-01 12 57389633 57389633 T C GPR182 Missense_Mutation p.W214R 0.39 deleterious(0) probably_damaging(1) TCGA-N8-A4PO-01 12 64873902 64873902 G A TBK1 Missense_Mutation p.R271Q 0.29 tolerated(0.64) benign(0.002) TCGA-N8-A4PO-01 13 40297490 40297490 A C COG6 Silent p.T535T 0.45 TCGA-N8-A4PO-01 14 51132202 51132202 G C SAV1 Missense_Mutation p.P77R 0.29 deleterious(0.04) benign(0.01) TCGA-N8-A4PO-01 15 37390250 37390250 C T MEIS2 Missense_Mutation p.A55T 0.83 tolerated(0.57) benign(0.004) TCGA-N8-A4PO-01 15 50838720 50838720 C A USP50 Translation_Start_Site p.M1? 0.77 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-N8-A4PO-01 15 90026330 90026330 C T RHCG Missense_Mutation p.V164M 0.36 deleterious(0.03) probably_damaging(0.973) TCGA-N8-A4PO-01 16 19195202 19195202 C A SYT17 Missense_Mutation p.N228K 0.09 deleterious(0.01) possibly_damaging(0.656) TCGA-N8-A4PO-01 16 3107185 3107185 C G MMP25 Missense_Mutation p.D271E 0.06 deleterious(0) probably_damaging(0.974) TCGA-N8-A4PO-01 17 11651054 11651054 T A DNAH9 Missense_Mutation p.I2194N 0.44 possibly_damaging(0.61) TCGA-N8-A4PO-01 17 12893544 12893544 C A ARHGAP44 3'UTR 0.28 TCGA-N8-A4PO-01 17 15884460 15884460 T A ZSWIM7 Splice_Site p.X68_splice 0.28 TCGA-N8-A4PO-01 17 48696033 48696033 T C CACNA1G Silent p.C1815C 0.21 TCGA-N8-A4PO-01 17 61972278 61972278 T C CSH1 3'UTR 0.24 TCGA-N8-A4PO-01 17 61972279 61972279 G A CSH1 3'UTR 0.24 TCGA-N8-A4PO-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.87 deleterious(0) probably_damaging(1) TCGA-N8-A4PO-01 17 79514331 79514331 C T C17orf70 Missense_Mutation p.D593N 0.27 tolerated(0.17) benign(0.286) TCGA-N8-A4PO-01 17 80273114 80273114 A C CD7 3'UTR 0.14 TCGA-N8-A4PO-01 19 10158113 10158113 T C C3P1 RNA 0.21 TCGA-N8-A4PO-01 19 10906831 10906831 G C DNM2 Intron 0.22 TCGA-N8-A4PO-01 19 17943399 17943399 C T JAK3 Missense_Mutation p.R870Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-N8-A4PO-01 19 40739307 40739307 C T AKT2 3'UTR 0.30 TCGA-N8-A4PO-01 19 41622201 41622201 C A CYP2F1 Silent p.P36P 0.29 TCGA-N8-A4PO-01 19 53886877 53886877 G C ZNF525 3'UTR 0.12 TCGA-N8-A4PO-01 19 55331426 55331426 A T KIR3DL1 Missense_Mutation p.Q205L 0.14 tolerated(0.07) benign(0) TCGA-N8-A4PO-01 19 5843926 5843926 G C FUT3 Missense_Mutation p.L309V 0.18 tolerated(0.06) probably_damaging(0.919) TCGA-N8-A4PO-01 1 145538291 145538291 C T ITGA10 Missense_Mutation p.H940Y 0.27 deleterious(0) benign(0.005) TCGA-N8-A4PO-01 1 155920676 155920676 G A ARHGEF2 Missense_Mutation p.R883W 0.19 deleterious_low_confidence(0.03) benign(0.405) TCGA-N8-A4PO-01 1 237870323 237870323 G A RYR2 Missense_Mutation p.V3219M 0.10 benign(0.018) TCGA-N8-A4PO-01 1 24969801 24969801 C G SRRM1 5'UTR 0.42 TCGA-N8-A4PO-01 1 28209315 28209315 C T THEMIS2 Missense_Mutation p.P494S 0.38 deleterious(0.01) probably_damaging(0.965) TCGA-N8-A4PO-01 1 6209463 6209463 C G CHD5 Missense_Mutation p.G335A 0.45 tolerated(0.08) benign(0.1) TCGA-N8-A4PO-01 21 43243763 43243763 G A PRDM15 Missense_Mutation p.H924Y 0.33 deleterious(0) probably_damaging(1) TCGA-N8-A4PO-01 22 38864221 38864221 C A KDELR3 5'UTR 0.18 TCGA-N8-A4PO-01 2 190606164 190606164 C T ANKAR Missense_Mutation p.S1266L 0.68 deleterious(0) possibly_damaging(0.631) TCGA-N8-A4PO-01 2 230223215 230223215 G C DNER 3'UTR 0.31 TCGA-N8-A4PO-01 2 27803080 27803080 C T C2orf16 Missense_Mutation p.T1214I 0.33 deleterious(0) benign(0.021) TCGA-N8-A4PO-01 2 85890855 85890855 C A SFTPB Missense_Mutation p.G275V 0.12 tolerated(0.12) possibly_damaging(0.71) TCGA-N8-A4PO-01 3 13612329 13612329 G T FBLN2 Silent p.R158R 0.28 TCGA-N8-A4PO-01 3 138739287 138739287 G C PRR23B Missense_Mutation p.L73V 0.09 deleterious(0) possibly_damaging(0.793) TCGA-N8-A4PO-01 3 193188759 193188759 G T ATP13A4 Missense_Mutation p.R278S 0.11 tolerated(0.25) possibly_damaging(0.495) TCGA-N8-A4PO-01 4 149357868 149357868 T C NR3C2 Missense_Mutation p.S49G 0.31 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-N8-A4PO-01 5 101576467 101576467 G T SLCO4C1 Silent p.R611R 0.47 TCGA-N8-A4PO-01 5 128362947 128362947 C G SLC27A6 Nonsense_Mutation p.Y459* 0.25 TCGA-N8-A4PO-01 5 14487604 14487604 C G TRIO Missense_Mutation p.N2289K 0.10 benign(0.003) TCGA-N8-A4PO-01 5 40998212 40998212 G C MROH2B Missense_Mutation p.A1567G 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-N8-A4PO-01 6 150267593 150267593 G A ULBP2 Silent p.G145G 0.46 TCGA-N8-A4PO-01 6 150267643 150267643 A C ULBP2 Missense_Mutation p.H162P 0.15 deleterious(0.02) possibly_damaging(0.491) TCGA-N8-A4PO-01 6 161529829 161529829 A C MAP3K4 Missense_Mutation p.K1392Q 0.50 deleterious(0.01) probably_damaging(0.932) TCGA-N8-A4PO-01 6 18215312 18215312 G C KDM1B Missense_Mutation p.Q496H 0.11 deleterious(0.01) unknown(0) TCGA-N8-A4PO-01 6 33371611 33371611 G A KIFC1 Missense_Mutation p.R154H 0.06 tolerated(0.07) benign(0.008) TCGA-N8-A4PO-01 6 55113469 55113469 A G HCRTR2 Missense_Mutation p.R86G 0.12 deleterious(0) probably_damaging(0.967) TCGA-N8-A4PO-01 7 100355878 100355878 C T ZAN Silent p.P1121P 0.20 TCGA-N8-A4PO-01 7 158468184 158468184 A G NCAPG2 Silent p.R437R 0.34 TCGA-N8-A4PO-01 7 36194058 36194058 T G EEPD1 Missense_Mutation p.I42S 0.56 deleterious(0) probably_damaging(0.983) TCGA-N8-A4PO-01 8 102381636 102381636 A T NACAP1 RNA 0.06 TCGA-N8-A4PO-01 8 142432356 142432356 C T PTP4A3 Missense_Mutation p.R6C 0.14 tolerated(0.12) possibly_damaging(0.905) TCGA-N8-A4PO-01 8 3216672 3216672 A C CSMD1 Splice_Site p.X1102_splice 0.20 TCGA-N8-A4PO-01 8 38095663 38095663 G A DDHD2 Silent p.T186T 0.71 TCGA-N8-A4PO-01 8 52773451 52773451 C A PCMTD1 Silent p.L87L 0.26 TCGA-N8-A4PO-01 8 66525567 66525567 G T ARMC1 Nonsense_Mutation p.S126* 0.21 TCGA-N8-A4PO-01 8 68397009 68397009 T G CPA6 Missense_Mutation p.K218Q 0.07 tolerated(0.18) benign(0.013) TCGA-N8-A4PO-01 8 95900250 95900250 A T CCNE2 Missense_Mutation p.F169I 0.73 deleterious(0.03) benign(0.424) TCGA-N8-A4PO-01 9 100862412 100862412 C T TRIM14 Missense_Mutation p.G113E 0.38 tolerated(1) benign(0.006) TCGA-N8-A4PO-01 9 102595040 102595040 C T NR4A3 Nonsense_Mutation p.R352* 0.89 TCGA-N8-A4PO-01 9 106874060 106874060 A G SMC2 Missense_Mutation p.N407D 0.96 tolerated(0.09) benign(0.06) TCGA-N8-A4PO-01 9 128003021 128003021 C T HSPA5 Silent p.K96K 0.35 TCGA-N8-A4PO-01 9 77415320 77415320 C G TRPM6 Silent p.T696T 0.26 TCGA-N8-A4PO-01 X 101620209 101620209 C T NXF2B Missense_Mutation p.G413S 0.19 tolerated(0.53) benign(0.016) TCGA-N8-A4PO-01 X 129629216 129629216 G T RP1-274L7.1 Intron 0.20 TCGA-N8-A4PO-01 X 70784520 70784520 G A OGT Missense_Mutation p.G836R 0.43 tolerated(0.07) probably_damaging(0.96) TCGA-N8-A4PP-01 10 103900434 103900434 C A PPRC1 Silent p.I723I 0.13 TCGA-N8-A4PP-01 10 108366950 108366950 T A SORCS1 Nonsense_Mutation p.K1047* 0.28 TCGA-N8-A4PP-01 10 112650324 112650324 G T PDCD4 Missense_Mutation p.D296Y 0.12 deleterious(0.01) possibly_damaging(0.654) TCGA-N8-A4PP-01 10 123844255 123844255 T C TACC2 Missense_Mutation p.M747T 0.15 benign(0.001) TCGA-N8-A4PP-01 10 33200429 33200429 T A ITGB1 Missense_Mutation p.Q626H 0.16 deleterious(0) probably_damaging(0.988) TCGA-N8-A4PP-01 10 38406502 38406502 T G ZNF37A Missense_Mutation p.N141K 0.21 tolerated(0.07) benign(0.014) TCGA-N8-A4PP-01 10 50901855 50901855 G T C10orf53 Nonsense_Mutation p.E45* 0.09 TCGA-N8-A4PP-01 10 61666143 61666143 C G CCDC6 Missense_Mutation p.G14R 0.19 deleterious_low_confidence(0.01) benign(0.095) TCGA-N8-A4PP-01 10 7605313 7605313 T C ITIH5 Silent p.E854E 0.10 TCGA-N8-A4PP-01 11 107205621 107205621 C A CWF19L2 Missense_Mutation p.D809Y 0.42 deleterious(0) probably_damaging(0.99) TCGA-N8-A4PP-01 11 120925929 120925929 C A TBCEL Silent p.A208A 0.15 TCGA-N8-A4PP-01 11 124180410 124180410 A C OR8D1 Missense_Mutation p.F85V 0.27 deleterious(0) possibly_damaging(0.697) TCGA-N8-A4PP-01 11 14316390 14316390 T A RRAS2 Missense_Mutation p.Q72L 0.48 deleterious(0) benign(0.361) TCGA-N8-A4PP-01 11 35454241 35454241 C T PAMR1 Missense_Mutation p.S626N 0.19 tolerated(0.3) benign(0.197) TCGA-N8-A4PP-01 11 56510657 56510657 C T OR9G4 Missense_Mutation p.E211K 0.19 deleterious(0.05) possibly_damaging(0.689) TCGA-N8-A4PP-01 11 61511823 61511823 G C DAGLA Silent p.S997S 0.21 TCGA-N8-A4PP-01 12 103352601 103352601 C A ASCL1 Silent p.I193I 0.22 TCGA-N8-A4PP-01 12 105558018 105558018 C G KIAA1033 Missense_Mutation p.A1096G 0.18 tolerated(0.74) benign(0.001) TCGA-N8-A4PP-01 12 44165125 44165125 G C IRAK4 Missense_Mutation p.L88F 0.18 deleterious(0) probably_damaging(1) TCGA-N8-A4PP-01 12 48468234 48468234 G T SENP1 Silent p.S271S 0.13 TCGA-N8-A4PP-01 12 53343316 53343316 G A KRT18 Missense_Mutation p.G120E 0.21 deleterious(0.04) possibly_damaging(0.658) TCGA-N8-A4PP-01 12 56568509 56568509 T G SMARCC2 Silent p.R474R 0.09 TCGA-N8-A4PP-01 12 58010124 58010124 G A ARHGEF25 Missense_Mutation p.R532Q 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-N8-A4PP-01 12 58197161 58197161 T C AVIL Missense_Mutation p.I611V 0.11 tolerated(0.48) benign(0.001) TCGA-N8-A4PP-01 12 81101831 81101831 G C MYF6 Missense_Mutation p.E111D 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-N8-A4PP-01 13 27827919 27827919 G A RPL21 Silent p.T2T 0.17 TCGA-N8-A4PP-01 13 28931761 28931761 T C FLT1 Silent p.E726E 0.21 TCGA-N8-A4PP-01 13 37269482 37269482 T C SERTM1 Silent p.N89N 0.25 TCGA-N8-A4PP-01 13 42293839 42293839 C T VWA8 Missense_Mutation p.V1002M 0.19 deleterious(0) probably_damaging(1) TCGA-N8-A4PP-01 13 78475270 78475270 A C EDNRB Missense_Mutation p.F382V 0.10 deleterious(0) possibly_damaging(0.715) TCGA-N8-A4PP-01 14 20925652 20925652 A T APEX1 Silent p.L314L 0.07 TCGA-N8-A4PP-01 15 31776314 31776314 C A OTUD7A Missense_Mutation p.G655V 0.23 tolerated(0.07) possibly_damaging(0.544) TCGA-N8-A4PP-01 15 85159579 85159579 A C ZSCAN2 Intron 0.09 TCGA-N8-A4PP-01 16 24581363 24581363 G A RBBP6 Missense_Mutation p.V1118I 0.20 tolerated_low_confidence(0.34) unknown(0) TCGA-N8-A4PP-01 16 3107137 3107137 C A MMP25 Nonsense_Mutation p.Y255* 0.27 TCGA-N8-A4PP-01 16 48395562 48395562 C G SIAH1 Missense_Mutation p.D291H 0.26 deleterious(0.02) probably_damaging(0.973) TCGA-N8-A4PP-01 16 56918049 56918049 G C SLC12A3 Missense_Mutation p.W586C 0.13 deleterious(0) probably_damaging(0.994) TCGA-N8-A4PP-01 16 57717867 57717867 C G GPR97 Nonsense_Mutation p.S302* 0.19 TCGA-N8-A4PP-01 16 68597927 68597927 A G ZFP90 Missense_Mutation p.M413V 0.16 tolerated(0.12) possibly_damaging(0.525) TCGA-N8-A4PP-01 16 70187451 70187451 G T PDPR Missense_Mutation p.R737L 0.11 tolerated(0.07) possibly_damaging(0.862) TCGA-N8-A4PP-01 17 32685137 32685137 C G CCL13 Missense_Mutation p.T95S 0.17 tolerated(0.1) benign(0.066) TCGA-N8-A4PP-01 17 6946803 6946803 A G SLC16A11 Silent p.D34D 0.18 TCGA-N8-A4PP-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.50 deleterious(0) probably_damaging(1) TCGA-N8-A4PP-01 17 76694918 76694918 G A CYTH1 Missense_Mutation p.P228L 0.28 deleterious(0.01) probably_damaging(0.929) TCGA-N8-A4PP-01 17 8092945 8092945 G A C17orf59 Silent p.L172L 0.29 TCGA-N8-A4PP-01 18 10540013 10540013 G A NAPG Missense_Mutation p.A133T 0.35 deleterious(0.01) probably_damaging(0.96) TCGA-N8-A4PP-01 19 11462749 11462749 G A CCDC159 Silent p.E169E 0.14 TCGA-N8-A4PP-01 19 13039265 13039265 G T FARSA Silent p.T244T 0.28 TCGA-N8-A4PP-01 19 14261831 14261831 G C LPHN1 Missense_Mutation p.R1427G 0.20 tolerated(0.57) possibly_damaging(0.855) TCGA-N8-A4PP-01 19 46443289 46443289 G T NOVA2 Silent p.G437G 0.20 TCGA-N8-A4PP-01 19 52716323 52716323 C T PPP2R1A Missense_Mutation p.S256F 0.25 deleterious(0) probably_damaging(0.999) TCGA-N8-A4PP-01 19 57065752 57065752 A T ZFP28 Missense_Mutation p.Y533F 0.11 tolerated(0.1) probably_damaging(0.998) TCGA-N8-A4PP-01 19 7805697 7805697 C G CD209 3'UTR 0.18 TCGA-N8-A4PP-01 19 8807988 8807988 C T ACTL9 Missense_Mutation p.R355Q 0.27 tolerated(1) benign(0.008) TCGA-N8-A4PP-01 19 9064668 9064668 G C MUC16 Missense_Mutation p.S7593C 0.13 unknown(0) TCGA-N8-A4PP-01 1 120438214 120438234 TGTATCCTCATACGAACATCT - ADAM30 In_Frame_Del p.Q242_I248del 0.30 TCGA-N8-A4PP-01 1 151156886 151156886 G C VPS72 Missense_Mutation p.R157G 0.05 tolerated(0.09) benign(0.059) TCGA-N8-A4PP-01 1 152191669 152191669 G A HRNR Silent p.G812G 0.13 TCGA-N8-A4PP-01 1 152733337 152733337 C T KPRP Nonsense_Mutation p.R425* 0.31 TCGA-N8-A4PP-01 1 152799971 152799971 A G LCE1A Missense_Mutation p.Q8R 0.06 tolerated_low_confidence(0.28) unknown(0) TCGA-N8-A4PP-01 1 153659705 153659705 C G NPR1 Missense_Mutation p.I655M 0.30 deleterious(0) probably_damaging(0.966) TCGA-N8-A4PP-01 1 153660533 153660533 C A NPR1 Silent p.I751I 0.37 TCGA-N8-A4PP-01 1 156702121 156702121 G A RRNAD1 Silent p.A95A 0.26 TCGA-N8-A4PP-01 1 15812530 15812530 T C CELA2B Missense_Mutation p.C210R 0.24 deleterious(0) benign(0.139) TCGA-N8-A4PP-01 1 158576730 158576730 T G OR10Z1 Missense_Mutation p.F168V 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-N8-A4PP-01 1 16356552 16356552 G A CLCNKA Missense_Mutation p.G464R 0.16 deleterious(0) probably_damaging(0.999) TCGA-N8-A4PP-01 1 174417869 174417872 TTGT - GPR52 Frame_Shift_Del p.C209Yfs*28 0.15 TCGA-N8-A4PP-01 1 177199126 177199126 G A BRINP2 Silent p.A38A 0.42 TCGA-N8-A4PP-01 1 183944241 183944241 T C COLGALT2 Missense_Mutation p.D161G 0.38 deleterious(0.01) possibly_damaging(0.844) TCGA-N8-A4PP-01 1 223116295 223116295 G C DISP1 Missense_Mutation p.E44Q 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.544) TCGA-N8-A4PP-01 1 22456324 22456324 G A WNT4 Missense_Mutation p.S33L 0.18 tolerated(0.06) probably_damaging(0.92) TCGA-N8-A4PP-01 1 226075635 226075635 G A RP4-559A3.7 Missense_Mutation p.R225C 0.20 deleterious_low_confidence(0) unknown(0) TCGA-N8-A4PP-01 1 26190027 26190027 G T PAQR7 Missense_Mutation p.P102T 0.19 tolerated(0.35) benign(0.03) TCGA-N8-A4PP-01 1 42050036 42050036 G A HIVEP3 Missense_Mutation p.L145F 0.18 probably_damaging(0.997) TCGA-N8-A4PP-01 1 51868137 51868137 C A EPS15 Missense_Mutation p.D618Y 0.19 deleterious(0) possibly_damaging(0.49) TCGA-N8-A4PP-01 1 60520989 60520989 T C C1orf87 Missense_Mutation p.T77A 0.25 tolerated(0.13) benign(0.003) TCGA-N8-A4PP-01 20 33971845 33971845 C T UQCC1 Missense_Mutation p.R74H 0.24 tolerated(0.22) benign(0.001) TCGA-N8-A4PP-01 20 51871857 51871857 C G TSHZ2 Missense_Mutation p.H620Q 0.23 tolerated(0.6) benign(0.001) TCGA-N8-A4PP-01 21 34926321 34926321 C T SON Missense_Mutation p.S1595F 0.30 possibly_damaging(0.485) TCGA-N8-A4PP-01 22 25153946 25153946 A G PIWIL3 Missense_Mutation p.I95T 0.36 tolerated(0.41) benign(0.006) TCGA-N8-A4PP-01 22 41320470 41320470 A C XPNPEP3 Silent p.V447V 0.20 TCGA-N8-A4PP-01 2 114691916 114691916 G A ACTR3 Missense_Mutation p.G165S 0.42 deleterious(0.02) probably_damaging(0.914) TCGA-N8-A4PP-01 2 116594298 116594298 T G DPP10 Missense_Mutation p.L724V 0.18 deleterious(0) possibly_damaging(0.831) TCGA-N8-A4PP-01 2 176982219 176982219 G A HOXD10 Missense_Mutation p.E220K 0.15 tolerated(0.4) benign(0.162) TCGA-N8-A4PP-01 2 176987826 176987826 C T HOXD9 Silent p.S110S 0.32 TCGA-N8-A4PP-01 2 179615491 179615491 G T TTN Intron 0.24 TCGA-N8-A4PP-01 2 191848434 191848434 G C STAT1 Missense_Mutation p.N460K 0.13 deleterious(0) probably_damaging(0.998) TCGA-N8-A4PP-01 2 1926933 1926933 T G MYT1L Missense_Mutation p.K203T 0.10 tolerated(0.22) probably_damaging(0.999) TCGA-N8-A4PP-01 2 230667108 230667108 A G TRIP12 Silent p.C947C 0.09 TCGA-N8-A4PP-01 2 234628129 234628129 C A UGT1A4 Silent p.S221S 0.13 TCGA-N8-A4PP-01 2 28531316 28531316 T C BRE Intron 0.24 TCGA-N8-A4PP-01 3 113850128 113850128 C G DRD3 Missense_Mutation p.K281N 0.34 tolerated(0.32) benign(0.038) TCGA-N8-A4PP-01 3 182584220 182584220 A G ATP11B Silent p.E536E 0.29 TCGA-N8-A4PP-01 3 193188757 193188757 G A ATP13A4 Silent p.R278R 0.16 TCGA-N8-A4PP-01 3 36874297 36874297 T G TRANK1 Silent p.T2215T 0.26 TCGA-N8-A4PP-01 3 38739317 38739317 G A SCN10A Silent p.I1798I 0.13 TCGA-N8-A4PP-01 3 9786709 9786709 T G BRPF1 Missense_Mutation p.F980V 0.23 tolerated(0.05) benign(0.164) TCGA-N8-A4PP-01 4 185074851 185074851 A C ENPP6 Missense_Mutation p.Y93D 0.20 deleterious(0) possibly_damaging(0.806) TCGA-N8-A4PP-01 4 68619733 68619733 C G GNRHR Missense_Mutation p.W107C 0.19 deleterious(0) probably_damaging(1) TCGA-N8-A4PP-01 4 83279884 83279884 T A HNRNPD Missense_Mutation p.K183N 0.21 deleterious(0) probably_damaging(0.994) TCGA-N8-A4PP-01 5 108680479 108680479 C G PJA2 Missense_Mutation p.E602D 0.09 deleterious(0.04) benign(0.199) TCGA-N8-A4PP-01 5 122365082 122365082 T C PPIC Missense_Mutation p.D50G 0.12 tolerated(0.07) benign(0.389) TCGA-N8-A4PP-01 5 140229832 140229832 G A PCDHA9 Silent p.S584S 0.30 TCGA-N8-A4PP-01 5 149503887 149503887 G A PDGFRB Missense_Mutation p.S650L 0.24 deleterious(0) probably_damaging(1) TCGA-N8-A4PP-01 5 16463618 16463618 C G ZNF622 Missense_Mutation p.D287H 0.15 deleterious(0) probably_damaging(0.997) TCGA-N8-A4PP-01 5 171849420 171849420 C T SH3PXD2B Silent p.Q52Q 0.20 TCGA-N8-A4PP-01 5 7863053 7863053 G C FASTKD3 Missense_Mutation p.L528V 0.29 tolerated(0.07) benign(0.391) TCGA-N8-A4PP-01 5 86668014 86668014 T C RASA1 Splice_Site p.X592_splice 0.38 TCGA-N8-A4PP-01 6 131199330 131199330 G A EPB41L2 Missense_Mutation p.R653C 0.40 deleterious(0) probably_damaging(0.994) TCGA-N8-A4PP-01 6 150210552 150210552 G T RAET1E Nonsense_Mutation p.S185* 0.49 TCGA-N8-A4PP-01 6 6002646 6002646 T C NRN1 Missense_Mutation p.D47G 0.18 tolerated(0.08) benign(0.133) TCGA-N8-A4PP-01 7 100683137 100683137 A T MUC17 Missense_Mutation p.S2814C 0.21 unknown(0) TCGA-N8-A4PP-01 7 106508093 106508093 G A PIK3CG Silent p.A29A 0.12 TCGA-N8-A4PP-01 7 139717541 139717550 TGCCTCGGGG - TBXAS1 Frame_Shift_Del p.L527Vfs*2 0.13 TCGA-N8-A4PP-01 7 38431442 38431442 C T AMPH Silent p.Q595Q 0.21 TCGA-N8-A4PP-01 7 48319344 48319344 T C ABCA13 Silent p.I2851I 0.20 TCGA-N8-A4PP-01 7 7625282 7625282 A G MIOS Missense_Mutation p.N555S 0.44 tolerated(0.11) benign(0.321) TCGA-N8-A4PP-01 7 82784272 82784272 C G PCLO Missense_Mutation p.G562A 0.04 unknown(0) TCGA-N8-A4PP-01 7 933563 933563 T G GET4 Missense_Mutation p.F284V 0.25 deleterious(0.01) probably_damaging(0.922) TCGA-N8-A4PP-01 8 145749373 145749373 G A LRRC14 3'UTR 0.20 TCGA-N8-A4PP-01 8 57079313 57079313 G T PLAG1 Missense_Mutation p.S331Y 0.11 tolerated(0.08) benign(0.446) TCGA-N8-A4PP-01 8 77767179 77767179 T C ZFHX4 Silent p.H2674H 0.19 TCGA-N8-A4PP-01 8 87486479 87486479 G C RMDN1 3'UTR 0.21 TCGA-N8-A4PP-01 9 114467555 114467555 G A C9orf84 Missense_Mutation p.P879S 0.15 deleterious(0.02) probably_damaging(1) TCGA-N8-A4PP-01 9 124535481 124535481 C G DAB2IP Missense_Mutation p.R864G 0.30 deleterious(0.01) possibly_damaging(0.774) TCGA-N8-A4PP-01 9 137620521 137620521 G T COL5A1 Silent p.T264T 0.18 TCGA-N8-A4PP-01 9 5231518 5231518 T C INSL4 5'UTR 0.28 TCGA-N8-A4PP-01 X 12903969 12903969 G T TLR7 Missense_Mutation p.K114N 0.31 tolerated(0.19) benign(0.002) TCGA-N8-A4PP-01 X 152037350 152037350 A C NSDHL Missense_Mutation p.E271A 0.10 deleterious(0) possibly_damaging(0.702) TCGA-N8-A4PP-01 X 18972448 18972448 A C PHKA2 Missense_Mutation p.V54G 0.36 deleterious(0) probably_damaging(0.985) TCGA-N8-A4PQ-01 10 133758848 133758848 C A PPP2R2D Silent p.I204I 0.13 TCGA-N8-A4PQ-01 10 45954693 45954693 G A MARCH8 Missense_Mutation p.S149F 0.14 deleterious(0.01) benign(0.139) TCGA-N8-A4PQ-01 10 46964009 46964009 G C SYT15 Silent p.V318V 0.11 TCGA-N8-A4PQ-01 10 909780 909780 G A LARP4B Silent p.A111A 0.49 TCGA-N8-A4PQ-01 11 55563417 55563417 G A OR5D14 Missense_Mutation p.C129Y 0.12 deleterious(0.01) benign(0.265) TCGA-N8-A4PQ-01 11 57281459 57281459 G C SLC43A1 Missense_Mutation p.N42K 0.86 tolerated(0.6) benign(0.001) TCGA-N8-A4PQ-01 11 7950117 7950117 G A OR10A6 Silent p.F31F 0.77 TCGA-N8-A4PQ-01 12 104155079 104155079 C T STAB2 Missense_Mutation p.T2417M 0.16 deleterious(0.04) benign(0.039) TCGA-N8-A4PQ-01 12 123703047 123703047 C A MPHOSPH9 Splice_Site p.X139_splice 0.11 TCGA-N8-A4PQ-01 12 52139791 52139791 G A SCN8A Missense_Mutation p.M701I 0.52 tolerated(0.15) benign(0.007) TCGA-N8-A4PQ-01 12 54914489 54914489 G A NCKAP1L Missense_Mutation p.R546H 0.31 deleterious(0.04) benign(0.262) TCGA-N8-A4PQ-01 12 667810 667810 C G B4GALNT3 Missense_Mutation p.T915S 0.23 tolerated(1) possibly_damaging(0.714) TCGA-N8-A4PQ-01 12 6787485 6787485 G C ZNF384 Missense_Mutation p.S165C 0.53 tolerated(0.07) possibly_damaging(0.827) TCGA-N8-A4PQ-01 12 81657012 81657012 T A PPFIA2 Missense_Mutation p.D1238V 0.38 deleterious_low_confidence(0) benign(0.026) TCGA-N8-A4PQ-01 13 40175117 40175117 G A LHFP Silent p.S79S 0.75 TCGA-N8-A4PQ-01 14 95921744 95921744 G A SYNE3 Silent p.D369D 0.22 TCGA-N8-A4PQ-01 15 53889416 53889416 C A WDR72 Missense_Mutation p.S1003I 0.19 deleterious(0.03) benign(0.09) TCGA-N8-A4PQ-01 15 90023572 90023572 C T RHCG Missense_Mutation p.R197Q 0.66 tolerated(0.29) possibly_damaging(0.647) TCGA-N8-A4PQ-01 16 227404 227404 C A HBA1 Nonsense_Mutation p.Y141* 0.22 TCGA-N8-A4PQ-01 17 38711153 38711153 G A CCR7 Silent p.Y326Y 0.23 TCGA-N8-A4PQ-01 17 42030190 42030190 C T PYY 3'UTR 0.80 TCGA-N8-A4PQ-01 17 42030806 42030806 G C PYY Missense_Mutation p.L16V 0.14 tolerated(0.15) probably_damaging(0.994) TCGA-N8-A4PQ-01 17 46847315 46847315 G A TTLL6 Nonsense_Mutation p.Q729* 0.09 TCGA-N8-A4PQ-01 17 46847428 46847428 G A TTLL6 Missense_Mutation p.S691F 0.11 tolerated(0.7) benign(0.022) TCGA-N8-A4PQ-01 17 51901710 51901710 T G KIF2B Missense_Mutation p.M439R 0.19 deleterious(0) benign(0.121) TCGA-N8-A4PQ-01 17 62272447 62272447 C A TEX2 Missense_Mutation p.M551I 0.10 deleterious(0) probably_damaging(0.991) TCGA-N8-A4PQ-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.75 tolerated(0.13) possibly_damaging(0.631) TCGA-N8-A4PQ-01 17 78184304 78184304 C T SGSH Missense_Mutation p.V486I 0.25 deleterious(0.01) benign(0.253) TCGA-N8-A4PQ-01 19 35448925 35448925 G C ZNF792 Missense_Mutation p.Q612E 0.39 tolerated(1) benign(0) TCGA-N8-A4PQ-01 19 35791110 35791110 G T MAG Missense_Mutation p.S258I 0.44 tolerated(0.45) benign(0.08) TCGA-N8-A4PQ-01 19 39868449 39868449 C T SAMD4B Missense_Mutation p.R477W 0.29 deleterious(0) probably_damaging(0.998) TCGA-N8-A4PQ-01 19 51022478 51022478 C T LRRC4B Nonsense_Mutation p.W164* 0.43 TCGA-N8-A4PQ-01 1 1459775 1459775 C T ATAD3A Silent p.R452R 0.38 TCGA-N8-A4PQ-01 1 158152703 158152703 C A CD1D Missense_Mutation p.P215T 0.23 deleterious(0.01) probably_damaging(0.96) TCGA-N8-A4PQ-01 1 237016332 237016332 G T MTR Missense_Mutation p.D633Y 0.23 deleterious(0) probably_damaging(0.955) TCGA-N8-A4PQ-01 1 28920318 28920318 A T RAB42 Missense_Mutation p.T3S 0.57 tolerated(0.11) benign(0.058) TCGA-N8-A4PQ-01 1 3418372 3418372 C A MEGF6 Missense_Mutation p.D768Y 0.35 deleterious(0.02) possibly_damaging(0.66) TCGA-N8-A4PQ-01 1 43738488 43738488 G A TMEM125 Missense_Mutation p.R32Q 0.19 tolerated(0.17) possibly_damaging(0.744) TCGA-N8-A4PQ-01 1 55277787 55277787 C A C1orf177 Silent p.V229V 0.21 TCGA-N8-A4PQ-01 20 23016994 23016994 G A SSTR4 Missense_Mutation p.V292I 0.70 tolerated(0.8) benign(0.012) TCGA-N8-A4PQ-01 20 50139907 50139907 C T NFATC2 Silent p.P291P 0.47 TCGA-N8-A4PQ-01 20 5282948 5282948 C T PROKR2 Missense_Mutation p.R298H 0.64 deleterious(0) probably_damaging(1) TCGA-N8-A4PQ-01 20 60736500 60736500 G A SS18L1 Silent p.T80T 0.33 TCGA-N8-A4PQ-01 2 16742751 16742751 G T FAM49A Silent p.I162I 0.18 TCGA-N8-A4PQ-01 2 18736500 18736500 T G RDH14 Missense_Mutation p.K323T 0.30 deleterious(0.01) probably_damaging(0.917) TCGA-N8-A4PQ-01 2 29158461 29158461 G A WDR43 Silent p.P504P 0.27 TCGA-N8-A4PQ-01 2 71780304 71780304 G C DYSF Missense_Mutation p.R657P 0.08 tolerated(0.08) probably_damaging(0.956) TCGA-N8-A4PQ-01 3 3076369 3076369 G A CNTN4 Missense_Mutation p.A613T 0.38 deleterious(0) probably_damaging(0.98) TCGA-N8-A4PQ-01 3 44611529 44611529 A T ZKSCAN7 Silent p.A309A 0.19 TCGA-N8-A4PQ-01 3 74411041 74411041 C T CNTN3 Missense_Mutation p.R455K 0.54 deleterious(0) possibly_damaging(0.557) TCGA-N8-A4PQ-01 4 169049237 169049237 G A ANXA10 Silent p.V7V 0.38 TCGA-N8-A4PQ-01 4 39506922 39506922 G C UGDH Missense_Mutation p.P369R 0.23 deleterious(0) probably_damaging(1) TCGA-N8-A4PQ-01 4 42895339 42895339 G A GRXCR1 Missense_Mutation p.R19Q 0.15 deleterious(0.05) probably_damaging(0.996) TCGA-N8-A4PQ-01 4 57193840 57193840 C T KIAA1211 Missense_Mutation p.P1191L 0.43 deleterious(0) possibly_damaging(0.859) TCGA-N8-A4PQ-01 4 57333819 57333820 - G SRP72 Frame_Shift_Ins p.V9Gfs*9 0.32 TCGA-N8-A4PQ-01 5 138643467 138643467 C G MATR3 Missense_Mutation p.D121E 0.15 deleterious(0) probably_damaging(0.956) TCGA-N8-A4PQ-01 5 161318010 161318010 C G GABRA1 Silent p.V270V 0.86 TCGA-N8-A4PQ-01 5 9630016 9630016 C T TAS2R1 Silent p.P43P 0.10 TCGA-N8-A4PQ-01 5 96360368 96360368 A G LNPEP Missense_Mutation p.D902G 0.33 deleterious(0.02) possibly_damaging(0.861) TCGA-N8-A4PQ-01 6 143091566 143091566 C T HIVEP2 Missense_Mutation p.G1437D 0.43 deleterious(0) probably_damaging(1) TCGA-N8-A4PQ-01 6 2893765 2893765 C T SERPINB9 Silent p.P149P 0.75 TCGA-N8-A4PQ-01 6 32362585 32362585 G T BTNL2 Missense_Mutation p.D432E 0.15 tolerated(0.17) benign(0.089) TCGA-N8-A4PQ-01 6 47847228 47847228 C T PTCHD4 Missense_Mutation p.R451H 0.30 deleterious(0) possibly_damaging(0.643) TCGA-N8-A4PQ-01 7 129950692 129950692 G C CPA4 Missense_Mutation p.E287Q 0.27 deleterious(0) probably_damaging(1) TCGA-N8-A4PQ-01 7 6175578 6175578 G A USP42 Missense_Mutation p.M183I 0.40 tolerated(0.07) possibly_damaging(0.755) TCGA-N8-A4PQ-01 7 6509337 6509337 T G KDELR2 Missense_Mutation p.K81Q 0.24 deleterious(0.04) benign(0.248) TCGA-N8-A4PQ-01 7 90895680 90895680 C G FZD1 Silent p.L495L 0.41 TCGA-N8-A4PQ-01 8 110131681 110131681 T A TRHR Missense_Mutation p.S398R 0.12 deleterious_low_confidence(0.01) benign(0.005) TCGA-N8-A4PQ-01 8 143996607 143996607 C A CYP11B2 Silent p.S150S 0.09 TCGA-N8-A4PQ-01 8 86572159 86572159 T C REXO1L1P 3'UTR 0.19 TCGA-N8-A4PQ-01 9 34978096 34978096 G A KIAA1045 Silent p.K397K 0.15 TCGA-N8-A4PQ-01 9 8331734 8331734 G A PTPRD Silent p.D1794D 0.28 TCGA-N8-A56S-01 10 126672148 126672148 G A ZRANB1 Missense_Mutation p.R600Q 0.35 tolerated(0.33) benign(0.048) TCGA-N8-A56S-01 10 50955098 50955098 G A OGDHL Missense_Mutation p.R382C 0.37 tolerated(0.25) benign(0.081) TCGA-N8-A56S-01 10 5693326 5693326 C T ASB13 Missense_Mutation p.V78M 0.44 deleterious(0) probably_damaging(0.988) TCGA-N8-A56S-01 11 45948052 45948052 C A GYLTL1B Missense_Mutation p.F356L 0.88 tolerated(0.07) benign(0.348) TCGA-N8-A56S-01 11 59559673 59559673 C T STX3 Missense_Mutation p.R151W 0.30 deleterious(0) probably_damaging(0.999) TCGA-N8-A56S-01 11 76922194 76922194 C T MYO7A Intron 0.25 TCGA-N8-A56S-01 12 108029059 108029059 C A BTBD11 Intron 0.32 TCGA-N8-A56S-01 12 110206636 110206636 G A FAM222A Missense_Mutation p.R301H 0.46 deleterious(0.01) probably_damaging(0.989) TCGA-N8-A56S-01 12 110234489 110234489 C T TRPV4 Silent p.R391R 0.39 TCGA-N8-A56S-01 12 6031879 6031879 G A ANO2 Silent p.L34L 0.46 TCGA-N8-A56S-01 12 6101114 6101114 G A VWF Silent p.N2223N 0.44 TCGA-N8-A56S-01 12 75874651 75874651 C T GLIPR1 5'UTR 0.13 TCGA-N8-A56S-01 14 52521021 52521021 G T NID2 Silent p.I262I 0.83 TCGA-N8-A56S-01 15 25219503 25219503 A C SNRPN 5'UTR 0.12 TCGA-N8-A56S-01 15 32928766 32928766 A G ARHGAP11A Missense_Mutation p.K598E 0.39 deleterious(0) possibly_damaging(0.802) TCGA-N8-A56S-01 15 45391874 45391874 G A DUOX2 Missense_Mutation p.A1134V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-N8-A56S-01 16 57238722 57238722 G A RSPRY1 Missense_Mutation p.G51E 0.47 tolerated(0.28) benign(0.197) TCGA-N8-A56S-01 17 37009966 37009966 T C RPL23 5'UTR 0.57 TCGA-N8-A56S-01 17 41019567 41019567 C T AOC4P RNA 0.73 TCGA-N8-A56S-01 17 65916138 65916138 C T BPTF Silent p.S1812S 0.72 TCGA-N8-A56S-01 17 7417153 7417153 C T POLR2A Missense_Mutation p.S1857F 0.40 possibly_damaging(0.472) TCGA-N8-A56S-01 17 7579389 7579389 G A TP53 Nonsense_Mutation p.Q100* 0.75 TCGA-N8-A56S-01 17 79653378 79653378 C T HGS Silent p.V53V 0.84 TCGA-N8-A56S-01 19 13941049 13941049 T C ZSWIM4 Missense_Mutation p.F719L 0.75 deleterious(0.04) unknown(0) TCGA-N8-A56S-01 19 16872832 16872832 C T NWD1 Silent p.S672S 0.24 TCGA-N8-A56S-01 1 10659423 10659423 A G PEX14 Missense_Mutation p.S100G 0.17 tolerated(0.13) benign(0.023) TCGA-N8-A56S-01 1 12952782 12952782 G A PRAMEF10 Missense_Mutation p.P464S 0.81 deleterious(0.03) benign(0.142) TCGA-N8-A56S-01 1 17029267 17029267 G A ESPNP RNA 0.12 TCGA-N8-A56S-01 1 57535038 57535038 A - DAB1 Frame_Shift_Del p.Y220Ifs*21 0.37 TCGA-N8-A56S-01 20 60885521 60885521 C A LAMA5 Silent p.L3518L 0.23 TCGA-N8-A56S-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.27 deleterious(0) possibly_damaging(0.835) TCGA-N8-A56S-01 22 37325831 37325831 T C CSF2RB Missense_Mutation p.C234R 0.46 tolerated(0.77) benign(0) TCGA-N8-A56S-01 2 109087815 109087815 C G GCC2 Missense_Mutation p.S677C 0.36 tolerated(0.16) benign(0.003) TCGA-N8-A56S-01 2 27449457 27449457 G T CAD Missense_Mutation p.G699V 0.44 deleterious(0) possibly_damaging(0.464) TCGA-N8-A56S-01 2 27535950 27535950 T C MPV17 Missense_Mutation p.I33V 0.42 tolerated(0.13) benign(0.02) TCGA-N8-A56S-01 2 79365098 79365098 C T REG1P RNA 0.09 TCGA-N8-A56S-01 3 188327559 188327559 C G LPP Missense_Mutation p.P347R 0.37 tolerated(0.11) benign(0.063) TCGA-N8-A56S-01 3 47050735 47050735 G A NBEAL2 Silent p.K2730K 0.43 TCGA-N8-A56S-01 3 58149162 58149162 G A FLNB Intron 0.25 TCGA-N8-A56S-01 4 39304717 39304718 TC - RFC1 Frame_Shift_Del p.D723Wfs*6 0.25 TCGA-N8-A56S-01 5 140188315 140188315 G A PCDHA4 Missense_Mutation p.G515S 0.57 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-N8-A56S-01 5 156589885 156589885 G A FAM71B Missense_Mutation p.A464V 0.56 deleterious(0.04) benign(0.01) TCGA-N8-A56S-01 5 176016580 176016580 A G CDHR2 Missense_Mutation p.K1057E 0.23 tolerated(0.11) benign(0.017) TCGA-N8-A56S-01 5 35035360 35035360 G A AGXT2 Missense_Mutation p.A183V 0.19 tolerated(0.17) benign(0.021) TCGA-N8-A56S-01 5 43675666 43675666 A C NNT Silent p.S896S 0.32 TCGA-N8-A56S-01 5 56178633 56178643 CCCCATAGTTC - MAP3K1 Frame_Shift_Del p.P1203Sfs*5 0.46 TCGA-N8-A56S-01 6 147124876 147124876 C T ADGB Intron 0.29 TCGA-N8-A56S-01 6 170176736 170176736 G A ERMARD Missense_Mutation p.R569H 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-N8-A56S-01 6 31599134 31599134 G A PRRC2A Missense_Mutation p.G895E 0.39 probably_damaging(0.931) TCGA-N8-A56S-01 6 84234378 84234378 C T PRSS35 Silent p.N406N 0.45 TCGA-N8-A56S-01 7 134260173 134260173 C A AKR1B15 Missense_Mutation p.A172D 0.11 deleterious(0.02) benign(0.058) TCGA-N8-A56S-01 7 27237844 27237844 G A HOXA13 Silent p.V380V 0.39 TCGA-N8-A56S-01 7 2953022 2953022 C T CARD11 Missense_Mutation p.R973H 0.41 tolerated(0.08) benign(0.021) TCGA-N8-A56S-01 7 44268464 44268464 C T CAMK2B Missense_Mutation p.E467K 0.36 tolerated_low_confidence(0.64) benign(0.305) TCGA-N8-A56S-01 8 61774882 61774882 G A CHD7 Missense_Mutation p.R2653Q 0.21 probably_damaging(0.986) TCGA-N8-A56S-01 9 131515492 131515492 C A ZER1 Missense_Mutation p.D233Y 0.79 tolerated(0.99) possibly_damaging(0.781) TCGA-N8-A56S-01 9 140773541 140773541 C T CACNA1B Missense_Mutation p.A107V 0.17 deleterious(0) benign(0.036) TCGA-N8-A56S-01 9 66458198 66458198 C G RNA5SP283 RNA 0.20 TCGA-N8-A56S-01 X 101804913 101804913 A G NXF4 RNA 0.33 TCGA-N8-A56S-01 X 123838998 123838998 G T TENM1 Missense_Mutation p.P294T 0.05 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-N8-A56S-01 X 144906237 144906237 A G SLITRK2 Missense_Mutation p.E765G 0.07 tolerated(0.23) benign(0.005) TCGA-N8-A56S-01 X 153050878 153050883 CACAGT - SRPK3 In_Frame_Del p.T536_F538delinsI 0.33 TCGA-N8-A56S-01 X 17710478 17710478 C T NHS Nonsense_Mutation p.R248* 0.34 TCGA-N8-A56S-01 X 30268692 30268692 G T MAGEB1 Missense_Mutation p.A28S 0.19 deleterious(0.02) probably_damaging(0.943) TCGA-N8-A56S-01 X 49845343 49845343 G A CLCN5 Silent p.A232A 0.32 TCGA-N9-A4PZ-01 10 121586918 121586918 T A INPP5F Missense_Mutation p.S1009T 0.30 tolerated_low_confidence(0.2) benign(0.187) TCGA-N9-A4PZ-01 11 126305176 126305176 G A KIRREL3 Silent p.A525A 0.87 TCGA-N9-A4PZ-01 11 4903359 4903359 T C OR51T1 Missense_Mutation p.I104T 0.48 tolerated(0.06) possibly_damaging(0.576) TCGA-N9-A4PZ-01 12 101295429 101295429 A C ANO4 5'UTR 0.11 TCGA-N9-A4PZ-01 12 101561910 101561910 G A SLC5A8 Silent p.F428F 0.19 TCGA-N9-A4PZ-01 12 123494604 123494604 C A PITPNM2 Missense_Mutation p.D146Y 0.53 deleterious(0) probably_damaging(1) TCGA-N9-A4PZ-01 12 56817131 56817131 G C TIMELESS Missense_Mutation p.A740G 0.25 tolerated(0.33) benign(0.001) TCGA-N9-A4PZ-01 13 29600313 29600313 G A MTUS2 Missense_Mutation p.R503H 0.62 tolerated(0.05) benign(0.001) TCGA-N9-A4PZ-01 14 59826213 59826213 C A DAAM1 Missense_Mutation p.A885E 0.32 deleterious(0) probably_damaging(0.999) TCGA-N9-A4PZ-01 15 90931626 90931626 G A IQGAP1 Missense_Mutation p.G18D 0.31 deleterious(0.01) benign(0.024) TCGA-N9-A4PZ-01 16 1129080 1129080 T C SSTR5 Missense_Mutation p.M71T 0.38 tolerated(0.11) benign(0.023) TCGA-N9-A4PZ-01 16 2018541 2018541 G T RNF151 Missense_Mutation p.C118F 0.14 deleterious(0) probably_damaging(1) TCGA-N9-A4PZ-01 16 31927691 31927691 G T ZNF267 Silent p.R707R 0.59 TCGA-N9-A4PZ-01 16 3543946 3543946 G A C16orf90 Nonsense_Mutation p.Q148* 0.30 TCGA-N9-A4PZ-01 16 67400946 67400946 T C LRRC36 Missense_Mutation p.S261P 0.05 deleterious(0) benign(0.012) TCGA-N9-A4PZ-01 16 68597568 68597568 A G ZFP90 Missense_Mutation p.H293R 0.64 tolerated(0.52) possibly_damaging(0.625) TCGA-N9-A4PZ-01 17 58512711 58512711 G C C17orf64 3'Flank 0.09 TCGA-N9-A4PZ-01 17 59485535 59485535 G A TBX2 Missense_Mutation p.A603T 0.07 tolerated(0.2) probably_damaging(0.978) TCGA-N9-A4PZ-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.86 deleterious(0) probably_damaging(1) TCGA-N9-A4PZ-01 17 80788321 80788321 C T ZNF750 Silent p.A623A 0.22 TCGA-N9-A4PZ-01 19 1044627 1044627 C T ABCA7 Missense_Mutation p.R367W 0.49 deleterious(0.03) benign(0.001) TCGA-N9-A4PZ-01 19 36047934 36047934 C G ATP4A Missense_Mutation p.V584L 0.22 deleterious(0.05) benign(0.023) TCGA-N9-A4PZ-01 19 36297437 36297437 C A PRODH2 Missense_Mutation p.G375V 0.26 deleterious(0) probably_damaging(1) TCGA-N9-A4PZ-01 19 40411752 40411752 G A FCGBP Silent p.A1292A 0.32 TCGA-N9-A4PZ-01 19 49671542 49671542 G T TRPM4 Silent p.L158L 0.05 TCGA-N9-A4PZ-01 19 7516088 7516088 C T ARHGEF18 Silent p.L409L 0.50 TCGA-N9-A4PZ-01 19 8609289 8609289 G A MYO1F Silent p.G472G 0.38 TCGA-N9-A4PZ-01 1 111825692 111825692 C T CHIAP2 RNA 0.33 TCGA-N9-A4PZ-01 1 156843598 156843598 C T NTRK1 Missense_Mutation p.R342W 0.60 tolerated(0.15) probably_damaging(0.982) TCGA-N9-A4PZ-01 1 173506126 173506126 C A SLC9C2 Missense_Mutation p.R537L 0.15 deleterious(0) possibly_damaging(0.833) TCGA-N9-A4PZ-01 1 197411423 197411423 G T CRB1 Splice_Site p.X1335_splice 0.04 TCGA-N9-A4PZ-01 1 202915580 202915580 C T ADIPOR1 Nonsense_Mutation p.W139* 0.18 TCGA-N9-A4PZ-01 1 230415077 230415077 A C GALNT2 Missense_Mutation p.K530T 0.43 tolerated(0.41) possibly_damaging(0.549) TCGA-N9-A4PZ-01 20 58489063 58489063 T C SYCP2 Missense_Mutation p.N266S 0.19 deleterious(0) probably_damaging(0.999) TCGA-N9-A4PZ-01 20 7963214 7963214 T C TMX4 Missense_Mutation p.E245G 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-N9-A4PZ-01 2 178416032 178416032 T C TTC30B Missense_Mutation p.K487R 0.21 tolerated(0.22) benign(0.411) TCGA-N9-A4PZ-01 2 179433890 179433891 - A TTN Frame_Shift_Ins p.K25657* 0.35 TCGA-N9-A4PZ-01 2 239103471 239103471 G A ILKAP Silent p.L32L 0.25 TCGA-N9-A4PZ-01 2 242062240 242062240 G A PASK Silent p.G993G 0.27 TCGA-N9-A4PZ-01 3 122003445 122003445 A C CASR Missense_Mutation p.K892Q 0.41 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-N9-A4PZ-01 3 178916957 178916957 G T PIK3CA Missense_Mutation p.R115L 0.41 tolerated(0.44) benign(0.147) TCGA-N9-A4PZ-01 3 195974349 195974349 C T PCYT1A Silent p.T125T 0.21 TCGA-N9-A4PZ-01 3 77595594 77595594 G A ROBO2 Nonsense_Mutation p.W363* 0.13 TCGA-N9-A4PZ-01 4 77290771 77290771 A G CCDC158 Silent p.D385D 0.06 TCGA-N9-A4PZ-01 5 140764737 140764737 C G PCDHGA7 Silent p.V757V 0.72 TCGA-N9-A4PZ-01 5 2752842 2752842 G T C5orf38 Missense_Mutation p.A103S 0.47 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-N9-A4PZ-01 5 79734554 79734554 G A ZFYVE16 Missense_Mutation p.V684I 0.12 tolerated(0.73) benign(0.001) TCGA-N9-A4PZ-01 5 94891003 94891003 G C ARSK Silent p.S7S 0.21 TCGA-N9-A4PZ-01 6 110081456 110081456 C G FIG4 Missense_Mutation p.R381G 0.20 deleterious(0) probably_damaging(0.961) TCGA-N9-A4PZ-01 6 33131300 33131300 C T COL11A2 3'UTR 0.25 TCGA-N9-A4PZ-01 7 110762745 110762745 T C LRRN3 5'UTR 0.18 TCGA-N9-A4PZ-01 7 113518383 113518383 C T PPP1R3A Missense_Mutation p.E922K 0.37 tolerated(1) benign(0) TCGA-N9-A4PZ-01 7 141736743 141736743 C T MGAM Nonsense_Mutation p.R733* 0.21 TCGA-N9-A4PZ-01 7 24324969 24324969 G A NPY Missense_Mutation p.G37D 0.36 deleterious(0.03) probably_damaging(0.971) TCGA-N9-A4PZ-01 7 43918018 43918018 A C URGCP Missense_Mutation p.F348L 0.41 tolerated(0.06) probably_damaging(0.994) TCGA-N9-A4PZ-01 8 110467013 110467013 G C PKHD1L1 Missense_Mutation p.R2269P 0.44 deleterious(0) probably_damaging(0.997) TCGA-N9-A4PZ-01 8 22476462 22476462 G A CCAR2 Missense_Mutation p.A819T 0.48 tolerated(0.25) probably_damaging(0.964) TCGA-N9-A4PZ-01 8 38178629 38178629 G T WHSC1L1 Silent p.S590S 0.37 TCGA-N9-A4PZ-01 9 117240804 117240804 G T DFNB31 Intron 0.89 TCGA-N9-A4PZ-01 9 140086700 140086700 C T TPRN Intron 0.48 TCGA-N9-A4PZ-01 9 990202 990202 G A DMRT3 Missense_Mutation p.A206T 0.10 tolerated(0.09) benign(0.045) TCGA-N9-A4PZ-01 X 129759183 129759183 A T ENOX2 3'UTR 0.15 TCGA-N9-A4PZ-01 X 21674488 21674488 G A KLHL34 Silent p.R473R 0.61 TCGA-N9-A4PZ-01 X 30236701 30236701 C T MAGEB2 Missense_Mutation p.P2S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-N9-A4PZ-01 X 84526455 84526455 A T ZNF711 Missense_Mutation p.K636M 0.13 deleterious(0) probably_damaging(1) TCGA-N9-A4Q1-01 11 62557623 62557623 G A TMEM179B 3'UTR 0.50 TCGA-N9-A4Q1-01 11 93797646 93797646 G A HEPHL1 Missense_Mutation p.A260T 0.84 deleterious(0.04) possibly_damaging(0.777) TCGA-N9-A4Q1-01 12 102590065 102590066 - ATA PARPBP Nonsense_Mutation 0.44 TCGA-N9-A4Q1-01 12 23699267 23699268 - T SOX5 Frame_Shift_Ins p.L527Hfs*6 0.24 TCGA-N9-A4Q1-01 12 39735322 39735322 C A KIF21A Nonsense_Mutation p.E636* 0.47 TCGA-N9-A4Q1-01 12 6436668 6436670 CTC - PLEKHG6 In_Frame_Del p.P641del 0.52 TCGA-N9-A4Q1-01 13 46553965 46553965 C T ZC3H13 Missense_Mutation p.R632H 0.12 probably_damaging(0.997) TCGA-N9-A4Q1-01 13 73636638 73636638 C T KLF5 Missense_Mutation p.P301S 0.57 deleterious(0) probably_damaging(0.968) TCGA-N9-A4Q1-01 14 106586202 106586202 T C IGHV3-13 Missense_Mutation p.N95D 0.21 deleterious_low_confidence(0.01) benign(0.246) TCGA-N9-A4Q1-01 14 23746240 23746240 C G HOMEZ Missense_Mutation p.S66T 0.23 tolerated(0.31) benign(0.129) TCGA-N9-A4Q1-01 14 36128374 36128374 G A RALGAPA1 Missense_Mutation p.S1280L 0.81 deleterious(0) possibly_damaging(0.559) TCGA-N9-A4Q1-01 17 44590338 44590338 T G LRRC37A2 Missense_Mutation p.L87R 0.36 tolerated(0.13) possibly_damaging(0.879) TCGA-N9-A4Q1-01 17 4848348 4848353 CACAGA - RNF167 3'UTR 0.43 TCGA-N9-A4Q1-01 17 67022537 67022537 C T ABCA9 Missense_Mutation p.G708S 0.93 deleterious(0) possibly_damaging(0.685) TCGA-N9-A4Q1-01 17 73732658 73732658 C T ITGB4 Missense_Mutation p.L625F 0.21 deleterious(0.02) possibly_damaging(0.824) TCGA-N9-A4Q1-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.93 deleterious(0) probably_damaging(1) TCGA-N9-A4Q1-01 19 23299857 23299857 A T ZNF730 5'UTR 0.65 TCGA-N9-A4Q1-01 19 35625443 35625443 C T LGI4 Missense_Mutation p.V48I 0.18 deleterious(0.01) benign(0.003) TCGA-N9-A4Q1-01 19 39330769 39330769 G A AC104534.3 Silent p.F17F 0.82 TCGA-N9-A4Q1-01 1 104160643 104160643 C A AMY2A Missense_Mutation p.P79Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q1-01 1 151271532 151271532 C A PI4KB Missense_Mutation p.E601D 0.26 deleterious(0) probably_damaging(0.996) TCGA-N9-A4Q1-01 1 248344089 248344089 C G OR2M2 Missense_Mutation p.P268A 0.42 tolerated(0.24) benign(0.232) TCGA-N9-A4Q1-01 1 248525481 248525481 T C OR2T4 Missense_Mutation p.F200S 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-N9-A4Q1-01 20 33328602 33328602 C T NCOA6 Missense_Mutation p.V1820M 0.56 probably_damaging(0.981) TCGA-N9-A4Q1-01 20 36488358 36488358 C T CTNNBL1 Missense_Mutation p.R484W 0.64 deleterious(0) possibly_damaging(0.817) TCGA-N9-A4Q1-01 20 50407647 50407647 G A SALL4 Missense_Mutation p.L459F 0.29 deleterious(0.01) benign(0.369) TCGA-N9-A4Q1-01 21 41741044 41741044 C T DSCAM Missense_Mutation p.A213T 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-N9-A4Q1-01 2 152432754 152432754 G A NEB Missense_Mutation p.R5607W 0.66 probably_damaging(1) TCGA-N9-A4Q1-01 2 163099498 163099498 C G FAP Missense_Mutation p.W4S 0.27 tolerated(0.41) benign(0.079) TCGA-N9-A4Q1-01 2 183866921 183866921 C G NCKAP1 Missense_Mutation p.R155P 0.12 deleterious(0) probably_damaging(0.964) TCGA-N9-A4Q1-01 3 105260569 105260570 - A ALCAM Frame_Shift_Ins p.S320Kfs*25 0.43 TCGA-N9-A4Q1-01 3 121100275 121100275 G T STXBP5L Missense_Mutation p.C852F 0.40 deleterious(0) probably_damaging(0.953) TCGA-N9-A4Q1-01 3 136667191 136667191 C T NCK1 Missense_Mutation p.R344C 0.37 deleterious(0.02) benign(0.103) TCGA-N9-A4Q1-01 3 148916171 148916171 G T CP Missense_Mutation p.H566N 0.11 tolerated(0.88) benign(0.003) TCGA-N9-A4Q1-01 3 164741472 164741472 T C SI Missense_Mutation p.I995M 0.10 tolerated(0.24) possibly_damaging(0.522) TCGA-N9-A4Q1-01 3 183041097 183041097 C A MCF2L2 Missense_Mutation p.D177Y 0.10 deleterious(0) probably_damaging(0.993) TCGA-N9-A4Q1-01 3 186510374 186510374 A G RFC4 Missense_Mutation p.C194R 0.07 deleterious(0.02) possibly_damaging(0.883) TCGA-N9-A4Q1-01 3 98002239 98002239 A C OR5H2 Silent p.R170R 0.31 TCGA-N9-A4Q1-01 4 10446750 10446750 T G ZNF518B Missense_Mutation p.E401D 0.05 tolerated(0.19) benign(0.003) TCGA-N9-A4Q1-01 4 129867279 129867279 C T SCLT1 Missense_Mutation p.S441N 0.62 tolerated(0.47) benign(0.006) TCGA-N9-A4Q1-01 4 68956262 68956262 C G TMPRSS11F Missense_Mutation p.R87S 0.17 deleterious(0.01) possibly_damaging(0.674) TCGA-N9-A4Q1-01 6 17556635 17556635 T G CAP2 Missense_Mutation p.S466A 0.45 tolerated(0.11) benign(0.047) TCGA-N9-A4Q1-01 6 3850736 3850736 G A FAM50B Missense_Mutation p.G231S 0.52 tolerated(1) benign(0.017) TCGA-N9-A4Q1-01 6 97681791 97681791 C A MMS22L Missense_Mutation p.W416C 0.58 deleterious(0) probably_damaging(0.998) TCGA-N9-A4Q1-01 7 140373825 140373825 T - ADCK2 Frame_Shift_Del p.G233Afs*18 0.22 TCGA-N9-A4Q1-01 7 38457436 38457436 C G AMPH Missense_Mutation p.E463Q 0.47 tolerated(0.23) benign(0.099) TCGA-N9-A4Q1-01 7 4119118 4119118 C A SDK1 Missense_Mutation p.L1076M 0.82 deleterious(0.01) probably_damaging(0.983) TCGA-N9-A4Q1-01 7 72658188 72658188 T G GTF2IRD2P1 RNA 0.42 TCGA-N9-A4Q1-01 8 144620650 144620650 G A ZC3H3 Missense_Mutation p.S296L 0.33 tolerated(0.06) benign(0.016) TCGA-N9-A4Q1-01 9 101980120 101980120 C T ALG2 3'UTR 0.80 TCGA-N9-A4Q1-01 X 83724416 83724416 G T HDX Silent p.V105V 0.70 TCGA-N9-A4Q3-01 10 94836425 94836425 G A CYP26A1 Missense_Mutation p.R375Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q3-01 11 68700847 68700847 C T IGHMBP2 Missense_Mutation p.T439M 0.25 deleterious(0) probably_damaging(0.954) TCGA-N9-A4Q3-01 11 75282848 75282848 T G SERPINH1 Missense_Mutation p.L326R 0.57 deleterious(0) probably_damaging(1) TCGA-N9-A4Q3-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.59 deleterious(0) possibly_damaging(0.479) TCGA-N9-A4Q3-01 12 6105256 6105256 G A VWF Missense_Mutation p.A1992V 0.06 tolerated(0.24) probably_damaging(0.918) TCGA-N9-A4Q3-01 12 7867853 7867853 G T DPPA3 Missense_Mutation p.V53F 0.22 tolerated(0.46) benign(0.003) TCGA-N9-A4Q3-01 13 49772644 49772644 G T FNDC3A Missense_Mutation p.G974V 0.29 tolerated(0.06) possibly_damaging(0.688) TCGA-N9-A4Q3-01 13 73357694 73357694 T C PIBF1 Silent p.V29V 0.18 TCGA-N9-A4Q3-01 14 103418917 103418917 G C CDC42BPB Missense_Mutation p.I1030M 0.33 tolerated(0.11) possibly_damaging(0.857) TCGA-N9-A4Q3-01 15 25468464 25468464 C T SNORD115-29 RNA 0.28 TCGA-N9-A4Q3-01 17 30806375 30806375 A G PSMD11 Missense_Mutation p.E340G 0.90 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q3-01 17 39521743 39521743 G A KRT33B Silent p.P217P 0.11 TCGA-N9-A4Q3-01 17 56355451 56355451 C A MPO Missense_Mutation p.R314L 0.95 deleterious(0) probably_damaging(0.988) TCGA-N9-A4Q3-01 17 65688807 65688807 G A PITPNC1 Missense_Mutation p.V268I 0.87 tolerated(0.28) benign(0.001) TCGA-N9-A4Q3-01 17 7579591 7579591 C G TP53 Splice_Site p.X33_splice 0.74 TCGA-N9-A4Q3-01 19 13873409 13873409 G A CCDC130 Missense_Mutation p.E240K 0.52 deleterious(0.02) probably_damaging(1) TCGA-N9-A4Q3-01 19 19626917 19626917 C T NDUFA13 5'UTR 0.20 TCGA-N9-A4Q3-01 19 19627058 19627058 C T NDUFA13 Missense_Mutation p.S4L 0.29 tolerated(0.34) benign(0.061) TCGA-N9-A4Q3-01 19 33414440 33414440 C T CEP89 Missense_Mutation p.M391I 0.13 deleterious(0.04) benign(0.053) TCGA-N9-A4Q3-01 19 52715971 52715971 C G PPP2R1A Missense_Mutation p.P179R 0.47 deleterious(0) probably_damaging(0.997) TCGA-N9-A4Q3-01 19 6919630 6919630 C A EMR1 Missense_Mutation p.H498N 0.31 tolerated(0.61) benign(0.002) TCGA-N9-A4Q3-01 19 8555521 8555521 G A PRAM1 Silent p.F621F 0.14 TCGA-N9-A4Q3-01 19 8564555 8564555 T A PRAM1 Missense_Mutation p.K46M 0.13 deleterious(0) probably_damaging(1) TCGA-N9-A4Q3-01 1 152284630 152284630 G A FLG Missense_Mutation p.S911L 0.21 benign(0.174) TCGA-N9-A4Q3-01 1 161138253 161138253 G A PPOX Missense_Mutation p.R168H 0.47 deleterious(0) probably_damaging(1) TCGA-N9-A4Q3-01 1 206758730 206758730 C T RASSF5 Intron 0.22 TCGA-N9-A4Q3-01 1 226065190 226065190 A C TMEM63A Missense_Mutation p.Y31D 0.44 tolerated(0.08) possibly_damaging(0.515) TCGA-N9-A4Q3-01 1 245530500 245530500 C T KIF26B Missense_Mutation p.A277V 0.35 tolerated(0.79) unknown(0) TCGA-N9-A4Q3-01 1 92178081 92178081 C A TGFBR3 Nonsense_Mutation p.E629* 0.26 TCGA-N9-A4Q3-01 20 35399395 35399409 TGAAGGGACTTCGAC - DSN1 In_Frame_Del p.Q74_L78del 0.40 TCGA-N9-A4Q3-01 20 590483 590483 C T TCF15 Silent p.S133S 0.60 TCGA-N9-A4Q3-01 2 128262839 128262839 C T IWS1 Missense_Mutation p.E214K 0.31 deleterious_low_confidence(0.01) benign(0.204) TCGA-N9-A4Q3-01 2 170058203 170058203 C T LRP2 Missense_Mutation p.R2796H 0.57 possibly_damaging(0.671) TCGA-N9-A4Q3-01 2 63272446 63272446 G T EHBP1 Intron 0.33 TCGA-N9-A4Q3-01 2 97271234 97271234 C G KANSL3 Missense_Mutation p.E586Q 0.63 tolerated_low_confidence(0.05) benign(0.26) TCGA-N9-A4Q3-01 2 97523729 97523729 G A ANKRD39 5'UTR 0.62 TCGA-N9-A4Q3-01 3 100364805 100364805 C T GPR128 Silent p.C321C 0.39 TCGA-N9-A4Q3-01 3 142168367 142168367 C T ATR Silent p.P2613P 0.51 TCGA-N9-A4Q3-01 3 93603724 93603724 T C PROS1 Missense_Mutation p.D447G 0.27 deleterious(0) probably_damaging(0.993) TCGA-N9-A4Q3-01 5 150310592 150310592 C T ZNF300P1 RNA 0.76 TCGA-N9-A4Q3-01 5 170648770 170648770 G A RANBP17 Missense_Mutation p.R783H 0.09 deleterious(0) possibly_damaging(0.791) TCGA-N9-A4Q3-01 5 36118007 36118007 C A LMBRD2 Nonsense_Mutation p.E378* 0.76 TCGA-N9-A4Q3-01 7 14517813 14517813 T C DGKB Missense_Mutation p.E604G 0.44 deleterious(0) probably_damaging(0.984) TCGA-N9-A4Q3-01 7 19184612 19184612 C T FERD3L Missense_Mutation p.R125Q 0.57 deleterious(0) probably_damaging(0.989) TCGA-N9-A4Q3-01 7 73811495 73811495 G C CLIP2 Missense_Mutation p.E938Q 0.11 deleterious(0.04) probably_damaging(0.933) TCGA-N9-A4Q3-01 8 124985750 124985750 C G FER1L6 Missense_Mutation p.P175R 0.15 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q3-01 X 129299534 129299534 G A AIFM1 Missense_Mutation p.R33W 0.33 deleterious_low_confidence(0) benign(0.28) TCGA-N9-A4Q3-01 X 14862842 14862843 - A FANCB Frame_Shift_Ins p.A650Cfs*8 0.14 TCGA-N9-A4Q3-01 X 3235472 3235472 C T MXRA5 Missense_Mutation p.G2084R 0.54 tolerated(0.36) benign(0.013) TCGA-N9-A4Q3-01 X 41055894 41055895 - A USP9X Frame_Shift_Ins p.R1380Kfs*5 0.17 TCGA-N9-A4Q3-01 X 8553429 8553429 G A KAL1 Silent p.D245D 0.48 TCGA-N9-A4Q4-01 10 29747234 29747234 T C SVIL Missense_Mutation p.Y2196C 0.24 deleterious(0) probably_damaging(0.988) TCGA-N9-A4Q4-01 11 56043798 56043798 C A OR5T1 Silent p.I228I 0.19 TCGA-N9-A4Q4-01 12 27803070 27803070 C T PPFIBP1 Missense_Mutation p.T200I 0.23 tolerated(0.1) probably_damaging(0.995) TCGA-N9-A4Q4-01 12 7550963 7550963 G T CD163L1 Missense_Mutation p.D542E 0.42 tolerated(0.21) probably_damaging(0.928) TCGA-N9-A4Q4-01 14 67850244 67850244 A C EIF2S1 3'UTR 0.80 TCGA-N9-A4Q4-01 15 72492887 72492887 G A PKM Silent p.L473L 0.50 TCGA-N9-A4Q4-01 15 75118966 75118966 C G CPLX3 5'UTR 0.54 TCGA-N9-A4Q4-01 15 86225393 86225393 A G AKAP13 Silent p.S1706S 0.18 TCGA-N9-A4Q4-01 16 14341273 14341273 C T MKL2 Intron 0.66 TCGA-N9-A4Q4-01 16 1814128 1814128 G C MAPK8IP3 Missense_Mutation p.G679R 0.46 deleterious(0.01) benign(0.097) TCGA-N9-A4Q4-01 16 66973 66974 CT - WASH4P Frame_Shift_Del p.E221Gfs*5 0.11 TCGA-N9-A4Q4-01 16 89922030 89922030 G A SPIRE2 Missense_Mutation p.R305Q 0.64 deleterious(0) probably_damaging(0.967) TCGA-N9-A4Q4-01 16 8999095 8999106 GAACAGACAGGT - USP7 In_Frame_Del p.D504_R508delinsG 0.57 TCGA-N9-A4Q4-01 17 42171102 42171102 G A HDAC5 Silent p.G66G 0.88 TCGA-N9-A4Q4-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.77 deleterious(0) probably_damaging(0.947) TCGA-N9-A4Q4-01 19 1802551 1802551 T A ATP8B3 Missense_Mutation p.N333I 0.34 deleterious(0) probably_damaging(0.979) TCGA-N9-A4Q4-01 19 1802613 1802613 C A ATP8B3 Silent p.R312R 0.45 TCGA-N9-A4Q4-01 19 1802614 1802614 C A ATP8B3 Missense_Mutation p.R312L 0.45 tolerated(0.09) probably_damaging(0.921) TCGA-N9-A4Q4-01 19 40541792 40541792 C T ZNF780B Missense_Mutation p.R325Q 0.25 tolerated(0.07) benign(0) TCGA-N9-A4Q4-01 19 42509903 42509903 G T GRIK5 Silent p.T745T 0.36 TCGA-N9-A4Q4-01 19 52569974 52569974 A T ZNF841 Silent p.S387S 0.70 TCGA-N9-A4Q4-01 19 55363703 55363703 G A KIR3DL2 Silent p.S107S 0.97 TCGA-N9-A4Q4-01 19 7964528 7964528 A C LRRC8E Missense_Mutation p.D374A 0.97 deleterious(0) probably_damaging(0.994) TCGA-N9-A4Q4-01 1 158670014 158670014 C A OR6K2 Silent p.L143L 0.27 TCGA-N9-A4Q4-01 1 208315676 208315677 - TC PLXNA2 Frame_Shift_Ins p.Q502Dfs*21 0.17 TCGA-N9-A4Q4-01 1 248308944 248308944 C A OR2M5 Silent p.S165S 0.48 TCGA-N9-A4Q4-01 1 31347424 31347424 T C SDC3 Silent p.P294P 0.51 TCGA-N9-A4Q4-01 1 31439111 31439111 C T PUM1 Missense_Mutation p.A602T 0.29 tolerated(0.12) possibly_damaging(0.691) TCGA-N9-A4Q4-01 1 33245093 33245093 C A YARS Missense_Mutation p.D456Y 0.55 deleterious(0.02) probably_damaging(0.918) TCGA-N9-A4Q4-01 20 35521285 35521285 T C SAMHD1 3'UTR 0.37 TCGA-N9-A4Q4-01 22 30682353 30682353 C T GATSL3 Silent p.E214E 0.95 TCGA-N9-A4Q4-01 2 133014613 133014613 C G MIR663B RNA 0.10 TCGA-N9-A4Q4-01 2 135745373 135745373 G A MAP3K19 Nonsense_Mutation p.R357* 0.53 TCGA-N9-A4Q4-01 2 228882546 228882546 G A SPHKAP Silent p.D1008D 0.48 TCGA-N9-A4Q4-01 5 148389871 148389871 C A SH3TC2 Missense_Mutation p.G1097W 0.94 deleterious(0) probably_damaging(1) TCGA-N9-A4Q4-01 6 12121828 12121828 C A HIVEP1 Missense_Mutation p.N600K 0.50 tolerated(0.25) benign(0.006) TCGA-N9-A4Q4-01 6 144757091 144757091 G T UTRN Missense_Mutation p.E292D 0.23 tolerated(0.27) benign(0.007) TCGA-N9-A4Q4-01 6 31431643 31431643 C G HCP5 RNA 0.10 TCGA-N9-A4Q4-01 7 101265461 101265461 G T MYL10 Missense_Mutation p.N123K 0.43 deleterious(0.01) possibly_damaging(0.689) TCGA-N9-A4Q4-01 7 141708409 141708409 T A MGAM Missense_Mutation p.D77E 0.44 tolerated(0.66) benign(0) TCGA-N9-A4Q4-01 7 143175364 143175364 C G TAS2R41 Silent p.L133L 0.19 TCGA-N9-A4Q4-01 7 150972292 150972292 G A SMARCD3 5'UTR 0.40 TCGA-N9-A4Q4-01 7 17362140 17362140 C T AHR Missense_Mutation p.S90F 0.30 deleterious(0.01) benign(0.379) TCGA-N9-A4Q4-01 7 75187513 75187515 CTT - HIP1 In_Frame_Del p.K474del 0.48 TCGA-N9-A4Q4-01 7 88423704 88423704 G T C7orf62 Missense_Mutation p.L185I 0.06 tolerated(0.35) benign(0.037) TCGA-N9-A4Q4-01 8 133637655 133637655 C G LRRC6 Missense_Mutation p.E233D 0.17 tolerated(0.13) benign(0.001) TCGA-N9-A4Q4-01 8 144885555 144885555 C A SCRIB Nonsense_Mutation p.E1201* 0.15 TCGA-N9-A4Q4-01 9 139327477 139327487 TGGTCTTGATC - INPP5E Frame_Shift_Del p.I401Gfs*25 0.23 TCGA-N9-A4Q4-01 9 139412690 139412690 G A NOTCH1 Missense_Mutation p.S385F 0.20 deleterious(0) possibly_damaging(0.563) TCGA-N9-A4Q4-01 9 21217162 21217162 G C IFNA16 Missense_Mutation p.S48C 0.62 deleterious(0.01) probably_damaging(0.993) TCGA-N9-A4Q4-01 X 12735885 12735885 G A FRMPD4 Silent p.P980P 0.67 TCGA-N9-A4Q4-01 X 139586343 139586343 C T SOX3 Missense_Mutation p.A295T 0.45 tolerated(0.36) possibly_damaging(0.8) TCGA-N9-A4Q4-01 X 152226402 152226402 G T PNMA3 Silent p.L330L 0.20 TCGA-N9-A4Q4-01 X 48458032 48458032 G A WDR13 Silent p.G150G 0.29 TCGA-N9-A4Q4-01 X 5821878 5821878 C T NLGN4X Missense_Mutation p.G281S 0.15 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q4-01 X 78010756 78010756 C A LPAR4 Silent p.T130T 0.54 TCGA-N9-A4Q7-01 10 103825882 103825882 C G HPS6 Silent p.L217L 0.27 TCGA-N9-A4Q7-01 10 103921999 103921999 C T NOLC1 Silent p.V691V 0.13 TCGA-N9-A4Q7-01 10 108412181 108412181 C A SORCS1 Nonsense_Mutation p.E812* 0.14 TCGA-N9-A4Q7-01 10 115608914 115608914 C G DCLRE1A Missense_Mutation p.Q650H 0.13 deleterious(0.02) possibly_damaging(0.711) TCGA-N9-A4Q7-01 10 118354353 118354353 G A PNLIPRP1 Missense_Mutation p.A148T 0.21 deleterious(0) probably_damaging(0.971) TCGA-N9-A4Q7-01 10 119043585 119043585 C G PDZD8 Missense_Mutation p.E887Q 0.13 tolerated(0.12) probably_damaging(0.984) TCGA-N9-A4Q7-01 10 129900912 129900912 C G MKI67 Missense_Mutation p.E3064D 0.10 tolerated(0.14) benign(0.219) TCGA-N9-A4Q7-01 10 134563349 134563349 G A INPP5A Silent p.A301A 0.17 TCGA-N9-A4Q7-01 10 15115119 15115119 T C OLAH Missense_Mutation p.I283T 0.10 deleterious(0.03) benign(0.131) TCGA-N9-A4Q7-01 10 30317227 30317227 G T KIAA1462 Missense_Mutation p.P617Q 0.39 tolerated(0.37) possibly_damaging(0.712) TCGA-N9-A4Q7-01 10 38240969 38240969 G A ZNF25 3'UTR 0.22 TCGA-N9-A4Q7-01 10 43679084 43679084 G C CSGALNACT2 3'UTR 0.33 TCGA-N9-A4Q7-01 10 51892695 51892695 G A FAM21A Missense_Mutation p.G1339E 0.20 deleterious(0.02) probably_damaging(0.957) TCGA-N9-A4Q7-01 10 75883653 75883653 C T AP3M1 Missense_Mutation p.R391H 0.21 deleterious(0.01) benign(0.427) TCGA-N9-A4Q7-01 10 90665330 90665330 C G STAMBPL1 Missense_Mutation p.S54C 0.20 deleterious(0) probably_damaging(0.998) TCGA-N9-A4Q7-01 10 94294450 94294450 C T IDE Missense_Mutation p.E126K 0.12 deleterious(0.05) probably_damaging(0.949) TCGA-N9-A4Q7-01 11 102272784 102272784 G T TMEM123 Nonsense_Mutation p.S104* 0.09 TCGA-N9-A4Q7-01 11 111747359 111747359 G C FDXACB1 Missense_Mutation p.Q180E 0.10 deleterious(0) probably_damaging(0.996) TCGA-N9-A4Q7-01 11 117090319 117090319 G A PCSK7 Silent p.F437F 0.09 TCGA-N9-A4Q7-01 11 117303881 117303881 C T DSCAML1 Missense_Mutation p.E1727K 0.14 deleterious(0) probably_damaging(0.92) TCGA-N9-A4Q7-01 11 121393333 121393333 C T SORL1 Silent p.L481L 0.07 TCGA-N9-A4Q7-01 11 123909026 123909026 C T OR10G7 Missense_Mutation p.R228H 0.29 tolerated(0.21) benign(0.027) TCGA-N9-A4Q7-01 11 133789788 133789788 G T IGSF9B Missense_Mutation p.L1278M 0.15 tolerated_low_confidence(0.13) possibly_damaging(0.487) TCGA-N9-A4Q7-01 11 134027892 134027892 G A NCAPD3 Missense_Mutation p.R1369W 0.09 deleterious(0.01) possibly_damaging(0.677) TCGA-N9-A4Q7-01 11 36484194 36484194 G C PRR5L Missense_Mutation p.E339Q 0.21 tolerated_low_confidence(0.15) probably_damaging(0.999) TCGA-N9-A4Q7-01 11 55339928 55339928 G C OR4C16 Missense_Mutation p.E109Q 0.12 deleterious(0) possibly_damaging(0.874) TCGA-N9-A4Q7-01 11 62444465 62444465 C T UBXN1 Missense_Mutation p.D222N 0.11 tolerated(0.63) possibly_damaging(0.885) TCGA-N9-A4Q7-01 11 62549791 62549791 C G TAF6L Silent p.L271L 0.27 TCGA-N9-A4Q7-01 11 64033632 64033632 C G PLCB3 Missense_Mutation p.A1075G 0.06 tolerated(0.32) benign(0.201) TCGA-N9-A4Q7-01 11 65088726 65088726 C T CDC42EP2 Silent p.L119L 0.15 TCGA-N9-A4Q7-01 11 6655238 6655238 G C DCHS1 Missense_Mutation p.S667C 0.11 deleterious(0) probably_damaging(0.997) TCGA-N9-A4Q7-01 11 67205662 67205662 C A CORO1B 3'UTR 0.36 TCGA-N9-A4Q7-01 11 72424190 72424190 G A ARAP1 Intron 0.38 TCGA-N9-A4Q7-01 11 73850728 73850728 G C C2CD3 Nonsense_Mutation p.S210* 0.12 TCGA-N9-A4Q7-01 11 77412843 77412843 G T RSF1 Missense_Mutation p.D477E 0.09 tolerated_low_confidence(0.72) benign(0.005) TCGA-N9-A4Q7-01 12 1036411 1036411 C T RAD52 Missense_Mutation p.D123N 0.06 deleterious(0) probably_damaging(0.964) TCGA-N9-A4Q7-01 12 107398927 107398927 C G CRY1 Missense_Mutation p.E123Q 0.12 tolerated(0.1) probably_damaging(1) TCGA-N9-A4Q7-01 12 111099146 111099146 C G HVCN1 Missense_Mutation p.K43N 0.10 tolerated(0.08) possibly_damaging(0.859) TCGA-N9-A4Q7-01 12 111963105 111963105 G C ATXN2 Missense_Mutation p.S356C 0.08 probably_damaging(0.967) TCGA-N9-A4Q7-01 12 112186865 112186865 A T ACAD10 Intron 0.10 TCGA-N9-A4Q7-01 12 116460310 116460310 G A MED13L Silent p.I192I 0.14 TCGA-N9-A4Q7-01 12 121570869 121570869 C T P2RX7 Silent p.F32F 0.06 TCGA-N9-A4Q7-01 12 124422324 124422324 C T CCDC92 Missense_Mutation p.A93T 0.06 tolerated(0.06) possibly_damaging(0.779) TCGA-N9-A4Q7-01 12 133331678 133331678 G C ANKLE2 Missense_Mutation p.L75V 0.09 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q7-01 12 20905332 20905332 C G SLCO1C1 Missense_Mutation p.F704L 0.10 tolerated_low_confidence(0.25) benign(0.01) TCGA-N9-A4Q7-01 12 27066540 27066540 C T ASUN Missense_Mutation p.R552K 0.06 tolerated(0.68) benign(0.017) TCGA-N9-A4Q7-01 12 48189070 48189070 C T HDAC7 Missense_Mutation p.R394Q 0.31 deleterious(0.01) possibly_damaging(0.71) TCGA-N9-A4Q7-01 12 48723537 48723537 C T H1FNT Missense_Mutation p.R155W 0.33 deleterious(0.04) possibly_damaging(0.835) TCGA-N9-A4Q7-01 12 55688184 55688184 G T OR6C6 Nonsense_Mutation p.S278* 0.15 TCGA-N9-A4Q7-01 12 56347166 56347166 G T DGKA Missense_Mutation p.G699V 0.06 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 12 56566438 56566438 C T SMARCC2 Silent p.E567E 0.09 TCGA-N9-A4Q7-01 12 56825346 56825346 G C TIMELESS Missense_Mutation p.Q244E 0.11 tolerated(0.68) benign(0.004) TCGA-N9-A4Q7-01 12 6153567 6153567 C T VWF Missense_Mutation p.A778T 0.35 deleterious(0.02) possibly_damaging(0.898) TCGA-N9-A4Q7-01 12 6981730 6981730 G T SPSB2 Silent p.L112L 0.10 TCGA-N9-A4Q7-01 12 72969145 72969145 G C TRHDE Missense_Mutation p.D703H 0.17 tolerated(0.06) benign(0.354) TCGA-N9-A4Q7-01 12 78400500 78400500 G T NAV3 Silent p.R394R 0.08 TCGA-N9-A4Q7-01 12 85450933 85450933 C T LRRIQ1 Nonsense_Mutation p.R788* 0.07 TCGA-N9-A4Q7-01 13 24895247 24895247 C T C1QTNF9 Nonsense_Mutation p.R115* 0.24 TCGA-N9-A4Q7-01 13 53282685 53282685 C T LECT1 Missense_Mutation p.D259N 0.13 tolerated(0.08) benign(0.001) TCGA-N9-A4Q7-01 13 88328522 88328522 G C SLITRK5 Missense_Mutation p.E293D 0.13 tolerated(0.12) benign(0.008) TCGA-N9-A4Q7-01 14 102906847 102906847 C T TECPR2 Missense_Mutation p.R885W 0.12 deleterious(0) probably_damaging(0.982) TCGA-N9-A4Q7-01 14 23945420 23945420 G C NGDN Intron 0.17 TCGA-N9-A4Q7-01 14 45642401 45642401 G A FANCM Missense_Mutation p.M768I 0.11 tolerated(0.08) benign(0.066) TCGA-N9-A4Q7-01 14 45665636 45665636 C G FANCM Missense_Mutation p.Q1868E 0.11 deleterious(0.03) benign(0.293) TCGA-N9-A4Q7-01 14 56763378 56763378 C G PELI2 Missense_Mutation p.L253V 0.12 deleterious(0.03) possibly_damaging(0.822) TCGA-N9-A4Q7-01 14 70633450 70633450 C T SLC8A3 Missense_Mutation p.V564I 0.16 tolerated(0.37) benign(0.005) TCGA-N9-A4Q7-01 14 74534271 74534271 C A ALDH6A1 Missense_Mutation p.G285V 0.11 deleterious(0) probably_damaging(0.975) TCGA-N9-A4Q7-01 14 74707950 74707950 C T VSX2 Missense_Mutation p.R146W 0.11 deleterious(0) probably_damaging(0.912) TCGA-N9-A4Q7-01 14 76928925 76928925 C T ESRRB Silent p.C145C 0.30 TCGA-N9-A4Q7-01 15 42021388 42021388 C T MGA Silent p.V1228V 0.25 TCGA-N9-A4Q7-01 15 44876090 44876090 C T SPG11 Missense_Mutation p.E1930K 0.28 deleterious(0.01) probably_damaging(0.953) TCGA-N9-A4Q7-01 15 45455856 45455856 G A DUOX1 Missense_Mutation p.E1459K 0.07 deleterious(0) possibly_damaging(0.686) TCGA-N9-A4Q7-01 15 48058076 48058076 G A SEMA6D Missense_Mutation p.E480K 0.13 tolerated(0.38) benign(0.232) TCGA-N9-A4Q7-01 15 52511996 52511996 G C MYO5C Missense_Mutation p.Q1249E 0.31 tolerated(0.73) benign(0.001) TCGA-N9-A4Q7-01 15 59373350 59373350 C A RNF111 Missense_Mutation p.Q722K 0.12 deleterious(0) benign(0.1) TCGA-N9-A4Q7-01 15 83826306 83826306 G A HDGFRP3 Missense_Mutation p.S107F 0.18 tolerated(0.11) benign(0.105) TCGA-N9-A4Q7-01 15 90167617 90167617 C G TICRR Nonsense_Mutation p.S1359* 0.12 TCGA-N9-A4Q7-01 16 1261782 1261782 G C CACNA1H Missense_Mutation p.D1515H 0.09 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 16 28620225 28620225 C G SULT1A1 Intron 0.10 TCGA-N9-A4Q7-01 16 70548413 70548413 C T COG4 Splice_Site p.X124_splice 0.24 TCGA-N9-A4Q7-01 16 71898077 71898077 G A ZNF821 Silent p.C127C 0.16 TCGA-N9-A4Q7-01 16 77859228 77859228 C T VAT1L Missense_Mutation p.P150L 0.30 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 16 88780614 88780614 C T CTU2 Missense_Mutation p.S359F 0.11 deleterious(0) probably_damaging(0.973) TCGA-N9-A4Q7-01 17 1563262 1563262 C G PRPF8 Missense_Mutation p.E1607Q 0.07 tolerated(0.07) benign(0.028) TCGA-N9-A4Q7-01 17 2303970 2303970 G A MNT Silent p.L13L 0.75 TCGA-N9-A4Q7-01 17 26874818 26874818 C T UNC119 Missense_Mutation p.E163K 0.12 deleterious(0) probably_damaging(0.98) TCGA-N9-A4Q7-01 17 26939325 26939325 C G SGK494 Missense_Mutation p.E203Q 0.10 deleterious(0.03) probably_damaging(0.921) TCGA-N9-A4Q7-01 17 33904942 33904942 C T PEX12 Silent p.V33V 0.11 TCGA-N9-A4Q7-01 17 35640260 35640260 G C ACACA Missense_Mutation p.S173C 0.11 deleterious(0) probably_damaging(0.997) TCGA-N9-A4Q7-01 17 40695097 40695097 C T NAGLU Missense_Mutation p.P358L 0.10 deleterious(0.02) possibly_damaging(0.845) TCGA-N9-A4Q7-01 17 42266526 42266526 G A TMUB2 Missense_Mutation p.V58I 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-N9-A4Q7-01 17 42429011 42429011 C T GRN Missense_Mutation p.P343S 0.34 deleterious(0.04) benign(0.103) TCGA-N9-A4Q7-01 17 46053347 46053347 G A CDK5RAP3 Missense_Mutation p.E256K 0.12 tolerated(0.09) benign(0.206) TCGA-N9-A4Q7-01 17 47874127 47874127 G A KAT7 Missense_Mutation p.R60Q 0.09 tolerated_low_confidence(0.2) benign(0.001) TCGA-N9-A4Q7-01 17 62291464 62291464 G A TEX2 Silent p.F38F 0.11 TCGA-N9-A4Q7-01 17 6499537 6499537 C A KIAA0753 Nonsense_Mutation p.E767* 0.12 TCGA-N9-A4Q7-01 17 6502580 6502580 C G KIAA0753 Missense_Mutation p.A717P 0.11 tolerated(0.2) benign(0.282) TCGA-N9-A4Q7-01 17 6502605 6502605 C G KIAA0753 Missense_Mutation p.L708F 0.12 tolerated(0.05) benign(0.01) TCGA-N9-A4Q7-01 17 66526119 66526119 G T PRKAR1A Missense_Mutation p.R317I 0.12 deleterious(0.04) benign(0.063) TCGA-N9-A4Q7-01 17 73259478 73259478 G A MRPS7 Missense_Mutation p.E133K 0.10 tolerated(0.19) benign(0.159) TCGA-N9-A4Q7-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.18 deleterious(0) probably_damaging(0.998) TCGA-N9-A4Q7-01 17 7578534 7578534 C A TP53 Missense_Mutation p.K132N 0.43 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 17 7660535 7660535 C T DNAH2 Silent p.L677L 0.10 TCGA-N9-A4Q7-01 17 7748879 7748879 C T KDM6B Missense_Mutation p.R3W 0.09 unknown(0) TCGA-N9-A4Q7-01 17 79615062 79615062 C A TSPAN10 Missense_Mutation p.A269E 0.19 tolerated(0.08) benign(0.052) TCGA-N9-A4Q7-01 18 50936947 50936947 C G DCC Missense_Mutation p.R1021G 0.12 deleterious(0) probably_damaging(0.944) TCGA-N9-A4Q7-01 18 61468144 61468144 C T SERPINB7 Silent p.F214F 0.11 TCGA-N9-A4Q7-01 18 8406128 8406128 G A PTPRM Missense_Mutation p.E1456K 0.10 deleterious(0) possibly_damaging(0.895) TCGA-N9-A4Q7-01 19 1234625 1234625 G C C19orf26 Nonsense_Mutation p.S191* 0.42 TCGA-N9-A4Q7-01 19 14578566 14578566 C G PKN1 Missense_Mutation p.F621L 0.08 deleterious(0.01) possibly_damaging(0.739) TCGA-N9-A4Q7-01 19 1460850 1460850 C G APC2 Silent p.L505L 0.17 TCGA-N9-A4Q7-01 19 14675027 14675027 C G TECR Missense_Mutation p.I139M 0.13 tolerated(0.2) benign(0.01) TCGA-N9-A4Q7-01 19 1796753 1796753 G C ATP8B3 Missense_Mutation p.I570M 0.17 deleterious(0) probably_damaging(0.914) TCGA-N9-A4Q7-01 19 2233840 2233840 C T PLEKHJ1 Silent p.%3D 0.16 TCGA-N9-A4Q7-01 19 34960012 34960012 C A UBA2 Silent p.V603V 0.10 TCGA-N9-A4Q7-01 19 3656427 3656427 C T PIP5K1C Silent p.Q199Q 0.16 TCGA-N9-A4Q7-01 19 36896496 36896496 C T ZFP82 Missense_Mutation p.R72K 0.15 tolerated(0.62) benign(0) TCGA-N9-A4Q7-01 19 40395956 40395956 G C FCGBP Missense_Mutation p.Q2481E 0.08 benign(0.012) TCGA-N9-A4Q7-01 19 40882619 40882619 C T PLD3 Missense_Mutation p.R375W 0.16 deleterious(0) probably_damaging(0.953) TCGA-N9-A4Q7-01 19 43268424 43268424 A G PSG8 Missense_Mutation p.L25S 0.07 deleterious(0.02) probably_damaging(0.99) TCGA-N9-A4Q7-01 19 4523457 4523457 C A PLIN5 3'UTR 0.20 TCGA-N9-A4Q7-01 19 46332275 46332275 G A SYMPK Silent p.L646L 0.13 TCGA-N9-A4Q7-01 19 50393136 50393136 G A IL4I1 Missense_Mutation p.R521C 0.23 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 19 52394225 52394225 T C ZNF649 Silent p.G388G 0.13 TCGA-N9-A4Q7-01 19 52714679 52714679 C T PPP2R1A Missense_Mutation p.S146L 0.10 deleterious(0) probably_damaging(0.997) TCGA-N9-A4Q7-01 19 52869526 52869526 G C ZNF610 Missense_Mutation p.E299Q 0.18 tolerated(1) benign(0.012) TCGA-N9-A4Q7-01 19 6459651 6459651 G A SLC25A23 5'UTR 0.38 TCGA-N9-A4Q7-01 1 110121874 110121874 G A GNAI3 Missense_Mutation p.V118I 0.08 tolerated(0.36) benign(0) TCGA-N9-A4Q7-01 1 111216487 111216487 G A KCNA3 Silent p.F315F 0.20 TCGA-N9-A4Q7-01 1 1146887 1146887 C G TNFRSF4 3'UTR 0.17 TCGA-N9-A4Q7-01 1 1152961 1152961 G C SDF4 Silent p.L340L 0.13 TCGA-N9-A4Q7-01 1 11589956 11589956 C G PTCHD2 Silent p.V1014V 0.10 TCGA-N9-A4Q7-01 1 118629493 118629493 C A SPAG17 Splice_Site p.X499_splice 0.24 TCGA-N9-A4Q7-01 1 12401942 12401942 G C VPS13D Missense_Mutation p.R2911T 0.11 probably_damaging(0.978) TCGA-N9-A4Q7-01 1 153177548 153177548 G C LELP1 3'UTR 0.26 TCGA-N9-A4Q7-01 1 155887352 155887352 G C KIAA0907 Missense_Mutation p.Q460E 0.11 deleterious(0.01) possibly_damaging(0.764) TCGA-N9-A4Q7-01 1 156212990 156212990 C G PMF1-BGLAP 3'UTR 0.07 TCGA-N9-A4Q7-01 1 156281931 156281931 G C CCT3 Missense_Mutation p.I352M 0.08 deleterious(0.02) possibly_damaging(0.836) TCGA-N9-A4Q7-01 1 158435818 158435818 C T OR10K1 Missense_Mutation p.S156F 0.10 deleterious(0) probably_damaging(0.932) TCGA-N9-A4Q7-01 1 158984677 158984677 C T IFI16 Silent p.F69F 0.07 TCGA-N9-A4Q7-01 1 176845718 176845718 T G ASTN1 Missense_Mutation p.I1140L 0.10 deleterious(0.01) benign(0.002) TCGA-N9-A4Q7-01 1 179320591 179320591 G A SOAT1 Silent p.L530L 0.10 TCGA-N9-A4Q7-01 1 186008973 186008973 G C HMCN1 Missense_Mutation p.D2048H 0.16 probably_damaging(0.999) TCGA-N9-A4Q7-01 1 193045690 193045690 G C TROVE2 Missense_Mutation p.K287N 0.10 deleterious(0) probably_damaging(0.998) TCGA-N9-A4Q7-01 1 203148584 203148584 C T CHI3L1 Missense_Mutation p.A381T 0.07 tolerated(0.13) benign(0) TCGA-N9-A4Q7-01 1 20417314 20417314 G A PLA2G5 3'UTR 0.28 TCGA-N9-A4Q7-01 1 207222908 207222908 G A YOD1 Silent p.V168V 0.43 TCGA-N9-A4Q7-01 1 213224656 213224656 C A RPS6KC1 5'UTR 0.30 TCGA-N9-A4Q7-01 1 226173095 226173095 G A SDE2 Missense_Mutation p.R422W 0.07 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 1 228288913 228288913 G C C1orf35 Missense_Mutation p.C237W 0.09 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-N9-A4Q7-01 1 230459297 230459297 G C PGBD5 Missense_Mutation p.I414M 0.12 tolerated(0.1) benign(0.307) TCGA-N9-A4Q7-01 1 248737522 248737522 G A OR2T34 Silent p.I179I 0.29 TCGA-N9-A4Q7-01 1 33245077 33245077 G C YARS Missense_Mutation p.S461C 0.11 tolerated(0.17) benign(0.076) TCGA-N9-A4Q7-01 1 36060202 36060202 G C TFAP2E Missense_Mutation p.K418N 0.11 deleterious(0.02) probably_damaging(0.979) TCGA-N9-A4Q7-01 1 39919466 39919466 G A MACF1 Missense_Mutation p.D4885N 0.32 probably_damaging(0.999) TCGA-N9-A4Q7-01 1 42049679 42049679 C G HIVEP3 Missense_Mutation p.E264Q 0.10 probably_damaging(0.997) TCGA-N9-A4Q7-01 1 44426880 44426880 A G IPO13 Missense_Mutation p.I764V 0.09 tolerated(0.6) benign(0.004) TCGA-N9-A4Q7-01 1 45553866 45553867 AG - ZSWIM5 Frame_Shift_Del p.S213* 0.13 TCGA-N9-A4Q7-01 1 55349324 55349324 C G DHCR24 Silent p.L118L 0.11 TCGA-N9-A4Q7-01 1 59132892 59132892 C T MYSM1 Missense_Mutation p.A617T 0.12 deleterious(0.05) benign(0.117) TCGA-N9-A4Q7-01 1 79116090 79116090 G C IFI44 Missense_Mutation p.Q70H 0.10 tolerated(0.15) probably_damaging(0.947) TCGA-N9-A4Q7-01 1 84967543 84967543 G C GNG5 Silent p.V64V 0.11 TCGA-N9-A4Q7-01 20 13463939 13463939 G C TASP1 Nonsense_Mutation p.S307* 0.07 TCGA-N9-A4Q7-01 20 19956199 19956199 G A RIN2 Silent p.P559P 0.11 TCGA-N9-A4Q7-01 20 24523840 24523840 G C SYNDIG1 Missense_Mutation p.R36T 0.08 tolerated(0.14) benign(0.021) TCGA-N9-A4Q7-01 20 2777179 2777179 C T CPXM1 Missense_Mutation p.E347K 0.19 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q7-01 20 33515072 33515072 C G ACSS2 3'UTR 0.17 TCGA-N9-A4Q7-01 20 37146598 37146598 C T RALGAPB Missense_Mutation p.H458Y 0.12 deleterious(0.03) probably_damaging(0.993) TCGA-N9-A4Q7-01 20 44037201 44037201 G C DBNDD2 Missense_Mutation p.E134Q 0.09 deleterious(0.03) probably_damaging(0.964) TCGA-N9-A4Q7-01 20 46293965 46293965 C T SULF2 Missense_Mutation p.E659K 0.23 tolerated(0.15) benign(0.283) TCGA-N9-A4Q7-01 21 40636563 40636563 C A BRWD1 Missense_Mutation p.D570Y 0.21 deleterious(0) probably_damaging(0.996) TCGA-N9-A4Q7-01 21 43298817 43298817 C G PRDM15 Missense_Mutation p.E134Q 0.18 tolerated_low_confidence(0.21) benign(0) TCGA-N9-A4Q7-01 21 47831205 47831205 G C PCNT Missense_Mutation p.E1740Q 0.12 possibly_damaging(0.727) TCGA-N9-A4Q7-01 21 47831535 47831535 G A PCNT Missense_Mutation p.E1850K 0.10 benign(0) TCGA-N9-A4Q7-01 21 47831655 47831655 G A PCNT Missense_Mutation p.E1890K 0.20 possibly_damaging(0.651) TCGA-N9-A4Q7-01 22 21081548 21081548 G A PI4KA Silent p.Y1637Y 0.23 TCGA-N9-A4Q7-01 22 31042916 31042916 C T SLC35E4 Silent p.L317L 0.11 TCGA-N9-A4Q7-01 22 36697661 36697661 C A MYH9 Missense_Mutation p.K850N 0.20 probably_damaging(0.99) TCGA-N9-A4Q7-01 22 42607449 42607449 G C TCF20 Nonsense_Mutation p.S1288* 0.16 TCGA-N9-A4Q7-01 22 46653081 46653081 C G PKDREJ Missense_Mutation p.D2047H 0.11 deleterious(0) probably_damaging(0.996) TCGA-N9-A4Q7-01 2 102792941 102792941 C G IL1R1 Missense_Mutation p.L478V 0.10 deleterious(0) probably_damaging(0.917) TCGA-N9-A4Q7-01 2 116548751 116548751 C G DPP10 Missense_Mutation p.D546E 0.11 deleterious(0.04) benign(0) TCGA-N9-A4Q7-01 2 131975958 131975958 C T POTEE 5'UTR 0.10 TCGA-N9-A4Q7-01 2 140990855 140990855 A G LRP1B Missense_Mutation p.M4567T 0.13 benign(0.042) TCGA-N9-A4Q7-01 2 149241016 149241016 G C MBD5 Intron 0.12 TCGA-N9-A4Q7-01 2 170062596 170062596 G A LRP2 Missense_Mutation p.S2498F 0.15 benign(0.046) TCGA-N9-A4Q7-01 2 178095660 178095660 G C NFE2L2 Silent p.L557L 0.07 TCGA-N9-A4Q7-01 2 178095740 178095740 G A NFE2L2 Missense_Mutation p.H531Y 0.13 tolerated(0.91) benign(0.133) TCGA-N9-A4Q7-01 2 179411742 179411742 G C TTN Missense_Mutation p.Q31504E 0.14 TCGA-N9-A4Q7-01 2 179632801 179632801 G A TTN Missense_Mutation p.S3082F 0.12 TCGA-N9-A4Q7-01 2 191844515 191844515 G T STAT1 Silent p.L570L 0.12 TCGA-N9-A4Q7-01 2 20114033 20114033 G A WDR35 Missense_Mutation p.H1054Y 0.11 tolerated(0.15) benign(0.352) TCGA-N9-A4Q7-01 2 202245467 202245467 C G TRAK2 Missense_Mutation p.K848N 0.12 tolerated(0.41) benign(0.021) TCGA-N9-A4Q7-01 2 207173234 207173234 G C ZDBF2 Missense_Mutation p.E1328Q 0.11 tolerated(0.2) benign(0.005) TCGA-N9-A4Q7-01 2 211299128 211299128 T A LANCL1 3'UTR 0.17 TCGA-N9-A4Q7-01 2 215852431 215852431 C G ABCA12 Missense_Mutation p.E1306Q 0.24 tolerated(0.05) possibly_damaging(0.859) TCGA-N9-A4Q7-01 2 228855726 228855726 C G SPHKAP Missense_Mutation p.R1650T 0.08 deleterious(0) possibly_damaging(0.906) TCGA-N9-A4Q7-01 2 230223213 230223213 G C DNER 3'UTR 0.36 TCGA-N9-A4Q7-01 2 233393337 233393337 C T CHRND Silent p.F160F 0.18 TCGA-N9-A4Q7-01 2 24285898 24285898 C G FKBP1B Intron 0.14 TCGA-N9-A4Q7-01 2 24484527 24484527 C G ITSN2 Missense_Mutation p.E814Q 0.13 deleterious(0.01) unknown(0) TCGA-N9-A4Q7-01 2 26725246 26725246 C T OTOF Missense_Mutation p.R211Q 0.16 tolerated(0.28) benign(0.261) TCGA-N9-A4Q7-01 2 27566241 27566241 C G GTF3C2 Missense_Mutation p.E61Q 0.10 deleterious_low_confidence(0.01) benign(0.136) TCGA-N9-A4Q7-01 2 27600930 27600930 G C ZNF513 Missense_Mutation p.H370D 0.10 tolerated(0.09) benign(0.227) TCGA-N9-A4Q7-01 2 27803866 27803866 G C C2orf16 Missense_Mutation p.R1476T 0.11 deleterious(0.05) benign(0.012) TCGA-N9-A4Q7-01 2 37291994 37291994 G C HEATR5B Silent p.L491L 0.33 TCGA-N9-A4Q7-01 2 46203651 46203651 C G PRKCE Missense_Mutation p.Q166E 0.24 tolerated(0.36) benign(0.081) TCGA-N9-A4Q7-01 2 48915596 48915596 A G LHCGR Missense_Mutation p.V447A 0.12 deleterious(0) possibly_damaging(0.73) TCGA-N9-A4Q7-01 2 63053311 63053311 C A EHBP1 Silent p.V134V 0.15 TCGA-N9-A4Q7-01 2 89568211 89568211 G C IGKV1-33 Missense_Mutation p.Q8E 0.09 deleterious(0.02) benign(0.168) TCGA-N9-A4Q7-01 2 96690526 96690526 G A GPAT2 Nonsense_Mutation p.Q475* 0.08 TCGA-N9-A4Q7-01 2 99294911 99294911 C G MGAT4A Missense_Mutation p.E40Q 0.16 tolerated(0.31) benign(0.021) TCGA-N9-A4Q7-01 3 101370146 101370146 G C ZBTB11 Missense_Mutation p.S1009C 0.07 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-N9-A4Q7-01 3 113955901 113955901 C T ZNF80 Silent p.G7G 0.08 TCGA-N9-A4Q7-01 3 121126326 121126326 C G STXBP5L Missense_Mutation p.Q966E 0.14 deleterious(0) probably_damaging(0.996) TCGA-N9-A4Q7-01 3 121414560 121414560 C T GOLGB1 Missense_Mutation p.A1604T 0.22 possibly_damaging(0.55) TCGA-N9-A4Q7-01 3 127788568 127788568 C A SEC61A1 3'UTR 0.19 TCGA-N9-A4Q7-01 3 129547175 129547175 C G TMCC1 Missense_Mutation p.G16A 0.10 tolerated_low_confidence(0.14) benign(0.038) TCGA-N9-A4Q7-01 3 133185774 133185774 C A BFSP2 Missense_Mutation p.Q332K 0.08 deleterious(0.01) probably_damaging(0.926) TCGA-N9-A4Q7-01 3 148899820 148899820 C G CP Missense_Mutation p.E842D 0.11 tolerated(0.58) benign(0) TCGA-N9-A4Q7-01 3 151095894 151095894 G C MED12L Missense_Mutation p.E1436Q 0.09 deleterious(0.05) possibly_damaging(0.838) TCGA-N9-A4Q7-01 3 178785380 178785380 G A ZMAT3 Missense_Mutation p.S54L 0.16 tolerated(0.38) benign(0.004) TCGA-N9-A4Q7-01 3 187416648 187416648 C T RTP2 Missense_Mutation p.E106K 0.09 tolerated(0.7) benign(0.441) TCGA-N9-A4Q7-01 3 194080440 194080440 A G LRRC15 Silent p.L451L 0.10 TCGA-N9-A4Q7-01 3 3214548 3214548 C T CRBN Missense_Mutation p.E147K 0.13 deleterious(0.02) possibly_damaging(0.771) TCGA-N9-A4Q7-01 3 33450944 33450944 A C UBP1 Missense_Mutation p.F235L 0.19 deleterious(0.04) possibly_damaging(0.766) TCGA-N9-A4Q7-01 3 3886713 3886713 C G LRRN1 Missense_Mutation p.Q130E 0.08 deleterious(0.05) benign(0.215) TCGA-N9-A4Q7-01 3 44952512 44952512 G C TGM4 Missense_Mutation p.D557H 0.16 deleterious(0) probably_damaging(0.994) TCGA-N9-A4Q7-01 3 48682465 48682465 C A CELSR3 Intron 0.16 TCGA-N9-A4Q7-01 3 49723897 49723897 G A MST1 Missense_Mutation p.R289C 0.12 deleterious(0.01) possibly_damaging(0.84) TCGA-N9-A4Q7-01 3 52696199 52696199 C T PBRM1 Missense_Mutation p.E160K 0.14 tolerated(0.12) possibly_damaging(0.502) TCGA-N9-A4Q7-01 4 1165191 1165191 C G SPON2 Missense_Mutation p.E102Q 0.12 tolerated(0.07) possibly_damaging(0.689) TCGA-N9-A4Q7-01 4 122250697 122250697 G C QRFPR Missense_Mutation p.F356L 0.10 tolerated(0.76) benign(0) TCGA-N9-A4Q7-01 4 122682819 122682819 G C TMEM155 Missense_Mutation p.S29C 0.20 deleterious(0) probably_damaging(0.996) TCGA-N9-A4Q7-01 4 128741618 128741618 G C HSPA4L Missense_Mutation p.Q570H 0.21 tolerated(0.1) possibly_damaging(0.796) TCGA-N9-A4Q7-01 4 1332269 1332269 C T MAEA Missense_Mutation p.S320F 0.19 tolerated(0.42) benign(0.017) TCGA-N9-A4Q7-01 4 141600123 141600123 G A TBC1D9 Missense_Mutation p.S275F 0.10 tolerated(0.06) probably_damaging(0.994) TCGA-N9-A4Q7-01 4 144445612 144445612 C G SMARCA5 Missense_Mutation p.S171C 0.11 deleterious(0) probably_damaging(0.971) TCGA-N9-A4Q7-01 4 145567979 145567979 G C HHIP Missense_Mutation p.R51T 0.12 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-N9-A4Q7-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.41 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 4 154626043 154626043 G C TLR2 Missense_Mutation p.E662Q 0.13 tolerated(0.15) benign(0.167) TCGA-N9-A4Q7-01 4 178360736 178360736 C G AGA Missense_Mutation p.E130Q 0.18 deleterious(0.04) benign(0.322) TCGA-N9-A4Q7-01 4 39304134 39304134 G A RFC1 Nonsense_Mutation p.Q809* 0.11 TCGA-N9-A4Q7-01 4 46252592 46252592 C T GABRA2 Silent p.Q363Q 0.11 TCGA-N9-A4Q7-01 4 46930400 46930400 G C GABRA4 Missense_Mutation p.P503A 0.07 tolerated_low_confidence(0.17) benign(0.001) TCGA-N9-A4Q7-01 4 56458323 56458323 C T PDCL2 5'UTR 0.29 TCGA-N9-A4Q7-01 4 57843128 57843128 C T NOA1 Silent p.A208A 0.11 TCGA-N9-A4Q7-01 4 77969711 77969711 G A CCNI Silent p.L265L 0.12 TCGA-N9-A4Q7-01 4 843880 843880 G A GAK Intron 0.31 TCGA-N9-A4Q7-01 4 85642692 85642692 G C WDFY3 Missense_Mutation p.S2492C 0.14 deleterious(0) probably_damaging(0.94) TCGA-N9-A4Q7-01 4 87724875 87724875 G C PTPN13 Silent p.L2178L 0.09 TCGA-N9-A4Q7-01 5 108704338 108704338 C A PJA2 Missense_Mutation p.D465Y 0.22 deleterious(0) possibly_damaging(0.907) TCGA-N9-A4Q7-01 5 115782673 115782673 G A SEMA6A Missense_Mutation p.S910F 0.09 tolerated(0.52) possibly_damaging(0.602) TCGA-N9-A4Q7-01 5 131006169 131006169 G C FNIP1 Missense_Mutation p.S1032C 0.15 tolerated(0.05) probably_damaging(0.999) TCGA-N9-A4Q7-01 5 13753449 13753449 G C DNAH5 Missense_Mutation p.Q3589E 0.15 benign(0.149) TCGA-N9-A4Q7-01 5 137682488 137682488 C G FAM53C Missense_Mutation p.S340C 0.13 tolerated(0.11) probably_damaging(0.938) TCGA-N9-A4Q7-01 5 140182485 140182485 C A PCDHA3 Missense_Mutation p.P568H 0.12 deleterious_low_confidence(0.03) benign(0.102) TCGA-N9-A4Q7-01 5 159830471 159830471 C T SLU7 Missense_Mutation p.A528T 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-N9-A4Q7-01 5 171533727 171533727 C G STK10 Missense_Mutation p.E229Q 0.16 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 5 176519359 176519359 C T FGFR4 Silent p.L255L 0.23 TCGA-N9-A4Q7-01 5 180374588 180374588 C T BTNL8 Silent p.G250G 0.11 TCGA-N9-A4Q7-01 5 2755234 2755234 G C C5orf38 3'UTR 0.10 TCGA-N9-A4Q7-01 5 462321 462321 G C EXOC3 Missense_Mutation p.E518Q 0.17 tolerated(0.24) benign(0.072) TCGA-N9-A4Q7-01 5 5306709 5306709 G A ADAMTS16 Silent p.K1093K 0.12 TCGA-N9-A4Q7-01 5 75996926 75996926 G C IQGAP2 Missense_Mutation p.D1465H 0.16 deleterious(0.02) probably_damaging(0.964) TCGA-N9-A4Q7-01 5 7695897 7695897 G A ADCY2 Missense_Mutation p.R301Q 0.40 tolerated(0.11) benign(0.257) TCGA-N9-A4Q7-01 5 86649044 86649044 C T RASA1 Missense_Mutation p.P442S 0.20 tolerated(0.48) benign(0.001) TCGA-N9-A4Q7-01 6 130392265 130392265 G A L3MBTL3 Missense_Mutation p.D413N 0.10 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 6 131179290 131179290 C G EPB41L2 Missense_Mutation p.E1002Q 0.12 deleterious(0) benign(0.043) TCGA-N9-A4Q7-01 6 133072608 133072608 C T VNN2 Missense_Mutation p.M292I 0.17 deleterious(0.03) benign(0.164) TCGA-N9-A4Q7-01 6 27805761 27805761 C T HIST1H2AK Silent p.K119K 0.06 TCGA-N9-A4Q7-01 6 29231625 29231625 G C XXbac-BPG308J9.3 RNA 0.17 TCGA-N9-A4Q7-01 6 31604698 31604698 C G PRRC2A Missense_Mutation p.F2041L 0.08 unknown(0) TCGA-N9-A4Q7-01 6 32063827 32063827 C A TNXB Missense_Mutation p.Q601H 0.11 benign(0.015) TCGA-N9-A4Q7-01 6 32117019 32117019 C T PRRT1 Missense_Mutation p.E301K 0.26 deleterious(0.01) benign(0.089) TCGA-N9-A4Q7-01 6 35021903 35021903 G A ANKS1A Missense_Mutation p.E680K 0.12 deleterious(0.02) benign(0.313) TCGA-N9-A4Q7-01 6 42996873 42996873 G C RRP36 Silent p.L229L 0.08 TCGA-N9-A4Q7-01 6 44144372 44144372 G C CAPN11 Missense_Mutation p.K352N 0.13 tolerated(0.13) benign(0.013) TCGA-N9-A4Q7-01 6 44224543 44224543 C A SLC35B2 Silent p.P28P 0.14 TCGA-N9-A4Q7-01 6 7571654 7571654 A T DSP Silent p.I580I 0.09 TCGA-N9-A4Q7-01 6 88317395 88317395 G C ORC3 Missense_Mutation p.M144I 0.11 tolerated(0.77) benign(0.001) TCGA-N9-A4Q7-01 6 88854953 88854953 C A CNR1 Missense_Mutation p.R14L 0.08 deleterious_low_confidence(0.02) benign(0.373) TCGA-N9-A4Q7-01 7 121652283 121652283 G C PTPRZ1 Missense_Mutation p.E1061D 0.10 tolerated_low_confidence(0.09) benign(0.006) TCGA-N9-A4Q7-01 7 128610355 128610356 AA - TNPO3 Frame_Shift_Del p.F815* 0.19 TCGA-N9-A4Q7-01 7 130356587 130356587 G C TSGA13 Nonsense_Mutation p.S191* 0.21 TCGA-N9-A4Q7-01 7 143028681 143028681 C G CLCN1 Missense_Mutation p.L368V 0.10 tolerated(0.12) benign(0.062) TCGA-N9-A4Q7-01 7 15725701 15725701 G A MEOX2 Silent p.C109C 0.16 TCGA-N9-A4Q7-01 7 2188795 2188795 G A MAD1L1 Silent p.V355V 0.10 TCGA-N9-A4Q7-01 7 2395011 2395011 C G EIF3B Missense_Mutation p.S152C 0.16 deleterious(0.01) possibly_damaging(0.747) TCGA-N9-A4Q7-01 7 30088967 30088967 C T PLEKHA8 Missense_Mutation p.S189L 0.08 deleterious(0) possibly_damaging(0.87) TCGA-N9-A4Q7-01 7 37951728 37951728 G A SFRP4 Missense_Mutation p.R262C 0.10 deleterious(0) probably_damaging(0.938) TCGA-N9-A4Q7-01 7 4050669 4050669 C G SDK1 Missense_Mutation p.P735A 0.08 tolerated(0.25) possibly_damaging(0.605) TCGA-N9-A4Q7-01 7 44571714 44571714 G C NPC1L1 Missense_Mutation p.P838A 0.25 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 7 6431634 6431634 G C RAC1 Missense_Mutation p.D63H 0.38 deleterious(0) probably_damaging(0.996) TCGA-N9-A4Q7-01 7 72419073 72419073 C A POM121 3'UTR 0.15 TCGA-N9-A4Q7-01 7 73588769 73588769 G A EIF4H Missense_Mutation p.R19K 0.17 tolerated(0.18) possibly_damaging(0.637) TCGA-N9-A4Q7-01 7 98992215 98992215 C T ARPC1B 3'UTR 0.19 TCGA-N9-A4Q7-01 7 99722164 99722164 G C CNPY4 Missense_Mutation p.D165H 0.14 deleterious(0.01) probably_damaging(0.963) TCGA-N9-A4Q7-01 7 99722494 99722494 G A CNPY4 Missense_Mutation p.D244N 0.07 tolerated_low_confidence(0.1) possibly_damaging(0.539) TCGA-N9-A4Q7-01 8 100205244 100205244 C T VPS13B Missense_Mutation p.A825V 0.10 tolerated(0.64) benign(0.029) TCGA-N9-A4Q7-01 8 125076587 125076587 G T FER1L6 Splice_Site p.X1110_splice 0.13 TCGA-N9-A4Q7-01 8 131172206 131172206 G C ASAP1 Missense_Mutation p.S305C 0.12 deleterious(0.02) probably_damaging(0.971) TCGA-N9-A4Q7-01 8 25715961 25715961 G A EBF2 Nonsense_Mutation p.Q468* 0.09 TCGA-N9-A4Q7-01 8 30989971 30989971 C G WRN Missense_Mutation p.I972M 0.21 tolerated(0.14) benign(0.079) TCGA-N9-A4Q7-01 8 69103983 69103983 C T PREX2 Missense_Mutation p.S1458L 0.24 tolerated(1) benign(0) TCGA-N9-A4Q7-01 8 94740446 94740446 G A FAM92A1 Missense_Mutation p.R264Q 0.15 tolerated(0.26) benign(0.004) TCGA-N9-A4Q7-01 8 95676969 95676969 G A ESRP1 Missense_Mutation p.R230Q 0.11 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 9 112195361 112195361 G C PTPN3 Missense_Mutation p.F252L 0.11 tolerated(0.25) probably_damaging(0.994) TCGA-N9-A4Q7-01 9 125588934 125588934 C G PDCL Missense_Mutation p.E45Q 0.12 tolerated(0.26) possibly_damaging(0.692) TCGA-N9-A4Q7-01 9 13121861 13121861 C G MPDZ Missense_Mutation p.R1703T 0.19 deleterious(0) possibly_damaging(0.848) TCGA-N9-A4Q7-01 9 131388873 131388873 G C SPTAN1 Missense_Mutation p.Q2161H 0.11 deleterious(0) probably_damaging(0.964) TCGA-N9-A4Q7-01 9 139910184 139910184 C G ABCA2 Missense_Mutation p.G1153R 0.12 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 9 139995996 139995996 G A MAN1B1 Missense_Mutation p.D376N 0.10 deleterious(0) probably_damaging(0.939) TCGA-N9-A4Q7-01 9 23692637 23692637 G A ELAVL2 Missense_Mutation p.A333V 0.30 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 9 26842281 26842281 C G CAAP1 3'UTR 0.15 TCGA-N9-A4Q7-01 9 34372195 34372195 C G KIAA1161 Missense_Mutation p.W215C 0.26 deleterious(0.02) probably_damaging(0.935) TCGA-N9-A4Q7-01 9 35560367 35560367 G C RUSC2 Missense_Mutation p.E1244Q 0.23 tolerated(0.39) probably_damaging(0.993) TCGA-N9-A4Q7-01 9 35561242 35561242 G A RUSC2 Missense_Mutation p.D1472N 0.09 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q7-01 9 90582003 90582003 C G CDK20 3'UTR 0.20 TCGA-N9-A4Q7-01 9 96294699 96294699 G C FAM120A Intron 0.16 TCGA-N9-A4Q7-01 X 106034391 106034391 G A RNF128 Silent p.E360E 0.07 TCGA-N9-A4Q7-01 X 114856633 114856633 G T PLS3 Missense_Mutation p.G50V 0.10 deleterious(0) probably_damaging(0.998) TCGA-N9-A4Q7-01 X 12735697 12735697 G A FRMPD4 Missense_Mutation p.E918K 0.11 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q7-01 X 134186156 134186156 G A FAM127B 5'UTR 0.19 TCGA-N9-A4Q7-01 X 138630629 138630629 C T F9 Nonsense_Mutation p.Q167* 0.08 TCGA-N9-A4Q7-01 X 151303366 151303366 C T MAGEA10 Missense_Mutation p.E243K 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-N9-A4Q7-01 X 153217411 153217411 G A HCFC1 Missense_Mutation p.T1714I 0.23 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-N9-A4Q7-01 X 153595790 153595790 C T FLNA Silent p.P281P 0.11 TCGA-N9-A4Q7-01 X 153663762 153663762 G A ATP6AP1 Missense_Mutation p.E372K 0.29 tolerated(0.15) benign(0.007) TCGA-N9-A4Q7-01 X 154197759 154197759 G A F8 Missense_Mutation p.H286Y 0.23 deleterious(0) probably_damaging(1) TCGA-N9-A4Q7-01 X 19507020 19507020 G A MAP3K15 Nonsense_Mutation p.R143* 0.23 TCGA-N9-A4Q7-01 X 48419375 48419375 C G TBC1D25 3'UTR 0.16 TCGA-N9-A4Q7-01 X 65483502 65483502 C T HEPH Silent p.L1126L 0.09 TCGA-N9-A4Q7-01 X 78216918 78216918 G A P2RY10 Missense_Mutation p.D301N 0.09 tolerated(0.19) benign(0.443) TCGA-N9-A4Q7-01 X 84601021 84601021 G A POF1B Missense_Mutation p.H190Y 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.868) TCGA-N9-A4Q8-01 10 101559103 101559103 C T ABCC2 Missense_Mutation p.T336M 0.07 tolerated(0.65) benign(0.01) TCGA-N9-A4Q8-01 10 124608784 124608784 G A FAM24B Silent p.C88C 0.27 TCGA-N9-A4Q8-01 11 111753232 111753232 T C C11orf1 Silent p.N62N 0.24 TCGA-N9-A4Q8-01 11 125301240 125301240 G A PKNOX2 Silent p.T457T 0.57 TCGA-N9-A4Q8-01 11 18369434 18369434 G C GTF2H1 Missense_Mutation p.D341H 0.11 deleterious(0.01) possibly_damaging(0.762) TCGA-N9-A4Q8-01 11 4123271 4123272 AG - RRM1 Frame_Shift_Del p.K24Afs*11 0.26 TCGA-N9-A4Q8-01 12 113285511 113285515 GGCTG - RPH3A Frame_Shift_Del p.G32Vfs*9 0.44 TCGA-N9-A4Q8-01 12 124911256 124911256 C T NCOR2 Missense_Mutation p.G414R 0.36 unknown(0) TCGA-N9-A4Q8-01 12 54799462 54799462 G A ITGA5 Silent p.D334D 0.55 TCGA-N9-A4Q8-01 12 55615303 55615303 C T OR10A7 Silent p.A165A 0.16 TCGA-N9-A4Q8-01 13 25744725 25744725 C T AMER2 Missense_Mutation p.A345T 0.31 tolerated(0.33) benign(0.102) TCGA-N9-A4Q8-01 13 46733004 46733004 T A LCP1 Missense_Mutation p.D62V 0.54 deleterious(0.02) possibly_damaging(0.732) TCGA-N9-A4Q8-01 14 81244369 81244369 T C CEP128 Missense_Mutation p.N745D 0.49 tolerated(0.07) possibly_damaging(0.547) TCGA-N9-A4Q8-01 15 43531185 43531185 G A TGM5 Missense_Mutation p.T392M 0.09 deleterious(0.04) probably_damaging(0.988) TCGA-N9-A4Q8-01 16 601377 601377 C - CAPN15 Frame_Shift_Del p.R716Gfs*100 0.37 TCGA-N9-A4Q8-01 17 47696405 47696405 C A SPOP Missense_Mutation p.D140Y 0.93 deleterious(0) probably_damaging(1) TCGA-N9-A4Q8-01 17 4858886 4858886 C G ENO3 Missense_Mutation p.I284M 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.632) TCGA-N9-A4Q8-01 17 7573982 7573982 C A TP53 Nonsense_Mutation p.E349* 0.88 TCGA-N9-A4Q8-01 19 19741121 19741121 G C GMIP Nonsense_Mutation p.S855* 0.22 TCGA-N9-A4Q8-01 19 49713575 49713575 G A TRPM4 Missense_Mutation p.V1081I 0.09 tolerated(1) benign(0.001) TCGA-N9-A4Q8-01 19 54848852 54848852 C A LILRA4 Missense_Mutation p.K257N 0.12 deleterious(0) probably_damaging(0.98) TCGA-N9-A4Q8-01 1 10713827 10713827 T A CASZ1 Missense_Mutation p.S763C 0.12 tolerated_low_confidence(0.05) benign(0.012) TCGA-N9-A4Q8-01 1 145293414 145293414 A G NBPF10 Silent p.V3V 0.04 TCGA-N9-A4Q8-01 1 145460251 145460251 C A POLR3GL 5'UTR 0.50 TCGA-N9-A4Q8-01 1 157516848 157516848 T A FCRL5 Missense_Mutation p.K64N 0.20 tolerated(0.34) benign(0.065) TCGA-N9-A4Q8-01 1 161654728 161654728 G A RPL31P11 RNA 0.53 TCGA-N9-A4Q8-01 1 20517119 20517119 T A UBXN10 Missense_Mutation p.V22D 0.07 deleterious(0) benign(0.019) TCGA-N9-A4Q8-01 1 240371964 240371964 G C FMN2 Missense_Mutation p.K1284N 0.12 probably_damaging(1) TCGA-N9-A4Q8-01 1 245851417 245851417 G A KIF26B Missense_Mutation p.G1711D 0.57 deleterious(0.03) unknown(0) TCGA-N9-A4Q8-01 1 26150122 26150122 C G MTFR1L Intron 0.35 TCGA-N9-A4Q8-01 1 32694780 32694780 C A EIF3I Silent p.T258T 0.36 TCGA-N9-A4Q8-01 20 23807168 23807168 C T CST2 Missense_Mutation p.V44I 0.41 deleterious(0.01) possibly_damaging(0.907) TCGA-N9-A4Q8-01 21 19666630 19666630 C T TMPRSS15 Missense_Mutation p.V815I 0.55 tolerated(0.63) benign(0.088) TCGA-N9-A4Q8-01 21 34878390 34878390 A G GART Missense_Mutation p.I825T 0.34 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q8-01 21 40571181 40571181 C T BRWD1 Missense_Mutation p.E1721K 0.42 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-N9-A4Q8-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.32 deleterious(0) possibly_damaging(0.835) TCGA-N9-A4Q8-01 22 37465297 37465297 G A TMPRSS6 Silent p.S652S 0.25 TCGA-N9-A4Q8-01 22 46654307 46654307 G A PKDREJ Missense_Mutation p.T1638M 0.17 deleterious(0.02) benign(0.393) TCGA-N9-A4Q8-01 2 108868909 108868909 C T SULT1C3 Silent p.H87H 0.30 TCGA-N9-A4Q8-01 2 111921771 111921772 - A BCL2L11 Frame_Shift_Ins p.R188Tfs*77 0.24 TCGA-N9-A4Q8-01 2 227896894 227896894 G A COL4A4 Missense_Mutation p.R1226C 0.55 unknown(0) TCGA-N9-A4Q8-01 3 27475588 27475588 T A SLC4A7 Silent p.V190V 0.12 TCGA-N9-A4Q8-01 4 145580927 145580927 T C HHIP Silent p.P256P 0.44 TCGA-N9-A4Q8-01 6 13365867 13365867 C T GFOD1 Missense_Mutation p.R94H 0.29 deleterious(0.01) possibly_damaging(0.735) TCGA-N9-A4Q8-01 6 136589310 136589310 C G BCLAF1 Missense_Mutation p.R796P 0.37 deleterious(0) possibly_damaging(0.655) TCGA-N9-A4Q8-01 6 136597335 136597335 G C BCLAF1 Nonsense_Mutation p.S443* 0.18 TCGA-N9-A4Q8-01 6 138200072 138200072 G A TNFAIP3 Missense_Mutation p.R497H 0.12 deleterious(0.04) possibly_damaging(0.677) TCGA-N9-A4Q8-01 6 32410986 32410986 C T HLA-DRA Missense_Mutation p.T118I 0.11 deleterious(0.03) benign(0.231) TCGA-N9-A4Q8-01 6 4021681 4021681 T G PRPF4B Missense_Mutation p.S8A 0.57 tolerated_low_confidence(1) benign(0.003) TCGA-N9-A4Q8-01 6 87725129 87725129 G T HTR1E Missense_Mutation p.C26F 0.54 deleterious(0.02) benign(0.012) TCGA-N9-A4Q8-01 7 113518497 113518497 G A PPP1R3A Nonsense_Mutation p.Q884* 0.16 TCGA-N9-A4Q8-01 7 150417642 150417642 C T GIMAP1 Missense_Mutation p.R184W 0.30 deleterious(0) probably_damaging(0.999) TCGA-N9-A4Q8-01 7 21805153 21805153 G A DNAH11 Silent p.Q3023Q 0.26 TCGA-N9-A4Q8-01 7 88963677 88963677 C A ZNF804B Missense_Mutation p.L461I 0.29 deleterious(0) probably_damaging(0.997) TCGA-N9-A4Q8-01 8 124693594 124693594 G T ANXA13 Missense_Mutation p.D320E 0.14 deleterious(0) possibly_damaging(0.589) TCGA-N9-A4Q8-01 8 144941352 144941352 G A EPPK1 Missense_Mutation p.R2024W 0.06 probably_damaging(1) TCGA-N9-A4Q8-01 8 40438702 40438702 C G ZMAT4 Missense_Mutation p.G219A 0.88 deleterious(0) probably_damaging(0.965) TCGA-N9-A4Q8-01 8 59851928 59851928 A G TOX Missense_Mutation p.L115P 0.05 deleterious(0) probably_damaging(0.986) TCGA-N9-A4Q8-01 8 95518910 95518910 A T KIAA1429 Silent p.G1305G 0.12 TCGA-N9-A4Q8-01 9 38411522 38411522 C A IGFBPL1 Nonsense_Mutation p.E238* 0.38 TCGA-N9-A4Q8-01 X 53674334 53674334 G C HUWE1 Missense_Mutation p.R110G 0.49 probably_damaging(0.998) TCGA-N9-A4Q8-01 X 55042071 55042071 C T ALAS2 Missense_Mutation p.A370T 0.33 deleterious(0) probably_damaging(0.995) TCGA-NA-A4QV-01 10 103190192 103190192 G A BTRC Missense_Mutation p.A47T 0.40 tolerated_low_confidence(0.19) benign(0.183) TCGA-NA-A4QV-01 10 105657468 105657468 G A OBFC1 Silent p.G197G 0.23 TCGA-NA-A4QV-01 10 123810033 123810033 G T TACC2 Silent p.T38T 0.40 TCGA-NA-A4QV-01 10 127491499 127491499 G A UROS Intron 0.41 TCGA-NA-A4QV-01 10 62648275 62648275 T G RHOBTB1 Missense_Mutation p.E384A 0.02 tolerated(0.1) probably_damaging(0.999) TCGA-NA-A4QV-01 10 99190370 99190370 C T PGAM1 Missense_Mutation p.P125L 0.18 tolerated(0.09) benign(0.021) TCGA-NA-A4QV-01 11 14490350 14490350 C T COPB1 Missense_Mutation p.M674I 0.20 tolerated(0.13) benign(0.012) TCGA-NA-A4QV-01 11 46740793 46740794 - CGTC F2 Frame_Shift_Ins p.G6Pfs*16 0.83 TCGA-NA-A4QV-01 11 59282485 59282485 G T OR4D9 Missense_Mutation p.V34L 0.33 tolerated(0.2) benign(0.053) TCGA-NA-A4QV-01 11 60694716 60694716 G A TMEM132A Silent p.P47P 0.23 TCGA-NA-A4QV-01 11 64109583 64109583 G A CCDC88B Missense_Mutation p.A265T 0.65 deleterious(0) probably_damaging(1) TCGA-NA-A4QV-01 11 6816677 6816677 C G OR6A2 Missense_Mutation p.G88A 0.53 tolerated(0.67) benign(0.001) TCGA-NA-A4QV-01 12 102046898 102046898 C A MYBPC1 Missense_Mutation p.P522T 0.58 deleterious(0) probably_damaging(0.999) TCGA-NA-A4QV-01 12 120876300 120876300 C T AL021546.6 Silent p.Y51Y 0.50 TCGA-NA-A4QV-01 12 132405699 132405699 C T ULK1 Missense_Mutation p.R1006C 0.33 deleterious(0.01) probably_damaging(1) TCGA-NA-A4QV-01 12 63974461 63974461 G C DPY19L2 Missense_Mutation p.I627M 0.14 deleterious(0.02) probably_damaging(0.96) TCGA-NA-A4QV-01 12 63974520 63974520 G C DPY19L2 Missense_Mutation p.Q608E 0.14 deleterious(0.01) possibly_damaging(0.876) TCGA-NA-A4QV-01 12 63974572 63974572 G C DPY19L2 Missense_Mutation p.I590M 0.18 deleterious(0) benign(0.314) TCGA-NA-A4QV-01 12 78362441 78362441 G A NAV3 Silent p.S210S 0.35 TCGA-NA-A4QV-01 14 102455116 102455116 A G DYNC1H1 Missense_Mutation p.D932G 0.59 benign(0.003) TCGA-NA-A4QV-01 14 61447758 61447758 G C TRMT5 5'UTR 0.56 TCGA-NA-A4QV-01 14 69256296 69256296 G C ZFP36L1 Nonsense_Mutation p.S324* 0.54 TCGA-NA-A4QV-01 15 74336610 74336610 G C PML Missense_Mutation p.R637P 0.21 tolerated(0.06) probably_damaging(0.956) TCGA-NA-A4QV-01 16 46993254 46993254 G A DNAJA2 Silent p.F284F 0.48 TCGA-NA-A4QV-01 16 72094680 72094680 C G HP Missense_Mutation p.A371G 0.19 deleterious(0) probably_damaging(0.999) TCGA-NA-A4QV-01 17 32963037 32963037 G A TMEM132E Silent p.P573P 0.47 TCGA-NA-A4QV-01 17 45219711 45219711 G C CDC27 Missense_Mutation p.P427R 0.38 tolerated(0.15) benign(0.066) TCGA-NA-A4QV-01 17 7578236 7578236 A T TP53 Missense_Mutation p.Y205N 0.87 deleterious(0) probably_damaging(0.948) TCGA-NA-A4QV-01 17 8157385 8157385 G A PFAS Missense_Mutation p.V44M 0.42 deleterious(0) probably_damaging(0.975) TCGA-NA-A4QV-01 18 28588282 28588282 G A DSC3 Silent p.N491N 0.37 TCGA-NA-A4QV-01 18 28714600 28714600 C T DSC1 Missense_Mutation p.G604E 0.21 deleterious(0) probably_damaging(1) TCGA-NA-A4QV-01 18 28714601 28714601 C T DSC1 Missense_Mutation p.G604R 0.21 deleterious(0) probably_damaging(1) TCGA-NA-A4QV-01 18 32409007 32409007 C T DTNA Intron 0.43 TCGA-NA-A4QV-01 18 72343750 72343750 T A ZNF407 Missense_Mutation p.L259M 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-NA-A4QV-01 19 35804291 35804291 G T MAG Silent p.R605R 0.60 TCGA-NA-A4QV-01 19 38633333 38633333 C G SIPA1L3 Nonsense_Mutation p.Y1172* 0.56 TCGA-NA-A4QV-01 1 142803490 142803490 T G RP11-423O2.5 RNA 0.17 TCGA-NA-A4QV-01 1 152648727 152648727 G A LCE2C Missense_Mutation p.R79H 0.48 tolerated_low_confidence(0.58) unknown(0) TCGA-NA-A4QV-01 1 157737561 157737561 C T FCRL2 Intron 0.38 TCGA-NA-A4QV-01 1 6692465 6692465 G A THAP3 Silent p.A116A 0.06 TCGA-NA-A4QV-01 1 76877743 76877743 G C ST6GALNAC3 Missense_Mutation p.Q88H 0.52 possibly_damaging(0.857) TCGA-NA-A4QV-01 20 44180764 44180764 G - WFDC8 Frame_Shift_Del p.K210Rfs*25 0.31 TCGA-NA-A4QV-01 20 58489052 58489052 C A SYCP2 Missense_Mutation p.G270C 0.43 deleterious(0) probably_damaging(1) TCGA-NA-A4QV-01 21 27141432 27141432 C T GABPA Silent p.V418V 0.23 TCGA-NA-A4QV-01 21 47614430 47614430 C T LSS Missense_Mutation p.A655T 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-NA-A4QV-01 2 116593798 116593798 C T DPP10 Silent p.S676S 0.26 TCGA-NA-A4QV-01 2 130833004 130833004 C T POTEF Missense_Mutation p.E681K 0.47 tolerated_low_confidence(0.17) benign(0.056) TCGA-NA-A4QV-01 2 50723042 50723042 C A NRXN1 Splice_Site p.X1064_splice 0.72 TCGA-NA-A4QV-01 3 196664529 196664529 T A NCBP2 Intron 0.37 TCGA-NA-A4QV-01 5 80476008 80476008 G A RASGRF2 Missense_Mutation p.E901K 0.16 tolerated_low_confidence(0.09) possibly_damaging(0.696) TCGA-NA-A4QV-01 6 38851677 38851677 A C DNAH8 Missense_Mutation p.K2504T 0.21 probably_damaging(1) TCGA-NA-A4QV-01 6 70964902 70964902 G T COL9A1 Missense_Mutation p.A521D 0.05 possibly_damaging(0.707) TCGA-NA-A4QV-01 7 66270322 66270322 C T KCTD7 Missense_Mutation p.T339M 0.11 deleterious(0) possibly_damaging(0.897) TCGA-NA-A4QV-01 7 75933345 75933345 C T HSPB1 Missense_Mutation p.S158F 0.22 deleterious(0) probably_damaging(1) TCGA-NA-A4QV-01 8 68204156 68204156 T C ARFGEF1 Missense_Mutation p.E281G 0.44 tolerated(0.25) benign(0.003) TCGA-NA-A4QV-01 X 153230117 153230117 T C HCFC1 Missense_Mutation p.Y85C 0.78 deleterious(0) probably_damaging(0.993) TCGA-NA-A4QV-01 X 48418348 48418348 C A TBC1D25 Missense_Mutation p.A351D 0.72 deleterious(0) probably_damaging(0.918) TCGA-NA-A4QW-01 10 47087186 47087186 G A NPY4R Missense_Mutation p.V135M 0.10 deleterious(0) probably_damaging(0.971) TCGA-NA-A4QW-01 10 91198855 91198855 G A SLC16A12 Silent p.I178I 0.12 TCGA-NA-A4QW-01 11 118454048 118454050 AGA - ARCN1 In_Frame_Del p.K142del 0.36 TCGA-NA-A4QW-01 12 644395 644395 C T B4GALNT3 Missense_Mutation p.P78L 0.17 deleterious(0.04) benign(0.132) TCGA-NA-A4QW-01 13 103710664 103710664 G A SLC10A2 Missense_Mutation p.T149I 0.15 deleterious(0.02) possibly_damaging(0.752) TCGA-NA-A4QW-01 13 25848322 25848322 C T MTMR6 Missense_Mutation p.E10K 0.74 deleterious(0) probably_damaging(0.971) TCGA-NA-A4QW-01 13 77792029 77792029 G C MYCBP2 Missense_Mutation p.N963K 0.22 probably_damaging(0.995) TCGA-NA-A4QW-01 14 102506745 102506745 G A DYNC1H1 Missense_Mutation p.E3955K 0.38 benign(0.022) TCGA-NA-A4QW-01 14 20483158 20483158 C T OR4K14 Silent p.G65G 0.19 TCGA-NA-A4QW-01 14 76232491 76232491 G A TTLL5 Missense_Mutation p.E599K 0.41 tolerated(0.07) benign(0.342) TCGA-NA-A4QW-01 15 62942335 62942335 G T TLN2 Missense_Mutation p.W63C 0.87 deleterious(0) probably_damaging(0.993) TCGA-NA-A4QW-01 15 75653473 75653473 G C MAN2C1 Silent p.L458L 0.80 TCGA-NA-A4QW-01 16 1995899 1995899 G A RPL3L Silent p.N328N 0.31 TCGA-NA-A4QW-01 17 48431783 48431783 G A XYLT2 Missense_Mutation p.G215S 0.67 tolerated(0.99) benign(0.085) TCGA-NA-A4QW-01 17 57057477 57057477 C T PPM1E Silent p.S451S 0.24 TCGA-NA-A4QW-01 17 66538939 66538955 AAGTCCAGAATCCTGCA - FAM20A Splice_Site p.X271_splice 0.51 TCGA-NA-A4QW-01 17 7414885 7414885 A G POLR2A Missense_Mutation p.N1360S 0.84 probably_damaging(1) TCGA-NA-A4QW-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.86 deleterious(0) probably_damaging(1) TCGA-NA-A4QW-01 17 79994778 79994778 G A DCXR Silent p.L88L 0.56 TCGA-NA-A4QW-01 18 61585320 61585320 C T SERPINB10 Missense_Mutation p.T119M 0.75 deleterious(0) probably_damaging(0.989) TCGA-NA-A4QW-01 19 12792434 12792434 G C DHPS Missense_Mutation p.F49L 0.83 tolerated(0.28) benign(0.004) TCGA-NA-A4QW-01 19 36051399 36051399 G A ATP4A Missense_Mutation p.A218V 0.36 deleterious(0.04) benign(0.017) TCGA-NA-A4QW-01 19 36832073 36832073 G A ZFP14 Missense_Mutation p.H219Y 0.17 deleterious(0.01) benign(0.022) TCGA-NA-A4QW-01 19 38160916 38160916 C T ZNF781 Missense_Mutation p.R45H 0.56 tolerated(0.41) benign(0) TCGA-NA-A4QW-01 19 45811690 45811690 G A CKM Missense_Mutation p.R252C 0.19 deleterious(0.01) possibly_damaging(0.889) TCGA-NA-A4QW-01 19 50062164 50062164 C T NOSIP Missense_Mutation p.R83Q 0.03 deleterious(0.01) possibly_damaging(0.475) TCGA-NA-A4QW-01 19 52715983 52715983 G A PPP2R1A Missense_Mutation p.R183Q 0.88 deleterious(0) probably_damaging(0.997) TCGA-NA-A4QW-01 1 114483989 114483989 C A HIPK1 Silent p.R328R 0.18 TCGA-NA-A4QW-01 1 149916917 149916917 C A OTUD7B Missense_Mutation p.E457D 0.38 tolerated(1) benign(0.004) TCGA-NA-A4QW-01 1 19493718 19493718 C G UBR4 Missense_Mutation p.D1303H 0.42 benign(0.081) TCGA-NA-A4QW-01 1 226827357 226827357 T C ITPKB Silent p.K818K 0.31 TCGA-NA-A4QW-01 1 248685017 248685017 G A OR2G6 Missense_Mutation p.E24K 0.53 deleterious(0) possibly_damaging(0.899) TCGA-NA-A4QW-01 1 89730615 89730615 G A GBP5 Silent p.A301A 0.35 TCGA-NA-A4QW-01 20 2411210 2411210 G T TGM6 Missense_Mutation p.E599D 0.50 tolerated(0.11) probably_damaging(0.983) TCGA-NA-A4QW-01 20 3614997 3614997 G C ATRN Missense_Mutation p.W1301C 0.14 deleterious(0) probably_damaging(0.998) TCGA-NA-A4QW-01 21 47961709 47961709 C A DIP2A Missense_Mutation p.L693M 0.38 deleterious(0.04) possibly_damaging(0.908) TCGA-NA-A4QW-01 22 36872877 36872879 CCC TA TXN2 Frame_Shift_Del p.G97Sfs*4 0.28 TCGA-NA-A4QW-01 22 43687110 43687122 CTGACACTCGTAG - SCUBE1 Frame_Shift_Del p.Y139Afs*22 0.17 TCGA-NA-A4QW-01 2 113181830 113181830 C A RGPD8 Missense_Mutation p.D43Y 0.26 deleterious(0) probably_damaging(0.936) TCGA-NA-A4QW-01 2 116572463 116572463 T A DPP10 Missense_Mutation p.F603I 0.22 tolerated(0.47) benign(0.035) TCGA-NA-A4QW-01 2 228860403 228860403 G A SPHKAP Missense_Mutation p.L1486F 0.13 tolerated(0.51) benign(0.008) TCGA-NA-A4QW-01 3 136664877 136664877 C T NCK1 Missense_Mutation p.P227S 0.49 deleterious(0) probably_damaging(0.992) TCGA-NA-A4QW-01 3 88189976 88189976 C T ZNF654 Missense_Mutation p.P506S 0.18 tolerated(0.21) possibly_damaging(0.788) TCGA-NA-A4QW-01 4 189012863 189012863 G A TRIML2 Silent p.D276D 0.77 TCGA-NA-A4QW-01 4 189022258 189022258 C T TRIML2 Silent p.A94A 0.75 TCGA-NA-A4QW-01 5 112364641 112364641 G A MCC Missense_Mutation p.R957W 0.06 deleterious(0) probably_damaging(0.993) TCGA-NA-A4QW-01 5 140801920 140801920 G A PCDHGA11 Missense_Mutation p.D376N 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-NA-A4QW-01 5 175816352 175816358 GCCCTCA - HIGD2A Frame_Shift_Del p.A59Pfs*18 0.37 TCGA-NA-A4QW-01 5 26881650 26881650 G A CDH9 Silent p.N655N 0.25 TCGA-NA-A4QW-01 5 96112057 96112057 G A ERAP1 Intron 0.88 TCGA-NA-A4QW-01 6 117686832 117686832 G C ROS1 Missense_Mutation p.A962G 0.17 tolerated(0.18) benign(0.285) TCGA-NA-A4QW-01 6 150067548 150067548 G A NUP43 Silent p.T28T 0.41 TCGA-NA-A4QW-01 6 26200068 26200068 G A HIST1H2BF Silent p.E94E 0.36 TCGA-NA-A4QW-01 6 31322991 31322991 G A HLA-B Missense_Mutation p.S302F 0.29 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-NA-A4QW-01 6 350858 350858 G C DUSP22 Missense_Mutation p.R182T 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.879) TCGA-NA-A4QW-01 6 83855292 83855292 G A DOPEY1 Missense_Mutation p.R1864H 0.33 tolerated(0.13) benign(0.015) TCGA-NA-A4QW-01 7 23391160 23391160 C T IGF2BP3 Silent p.L149L 0.32 TCGA-NA-A4QW-01 7 5352339 5352339 G A TNRC18 Missense_Mutation p.A2728V 0.28 unknown(0) TCGA-NA-A4QW-01 7 56140699 56140699 C G SUMF2 Silent p.V97V 0.26 TCGA-NA-A4QW-01 8 139151238 139151238 G T FAM135B Missense_Mutation p.Q1298K 0.44 tolerated(0.27) benign(0.444) TCGA-NA-A4QW-01 8 41467297 41467297 G A AGPAT6 Missense_Mutation p.R120Q 0.71 deleterious(0.01) benign(0.154) TCGA-NA-A4QW-01 8 86573397 86573397 G A REXO1L1P 3'UTR 0.29 TCGA-NA-A4QW-01 9 103109336 103109336 C T TEX10 Missense_Mutation p.R178H 0.67 tolerated(0.12) possibly_damaging(0.782) TCGA-NA-A4QW-01 9 131600040 131600040 G A CCBL1 Missense_Mutation p.P164L 0.89 tolerated(0.12) benign(0.005) TCGA-NA-A4QW-01 9 19316786 19316786 G A DENND4C Missense_Mutation p.E586K 0.74 deleterious(0.01) benign(0.358) TCGA-NA-A4QW-01 9 39133037 39133037 C G CNTNAP3 Missense_Mutation p.A658P 0.33 deleterious(0.05) benign(0.264) TCGA-NA-A4QW-01 9 88937264 88937264 C A ZCCHC6 Missense_Mutation p.D1002Y 0.68 deleterious(0) probably_damaging(0.991) TCGA-NA-A4QX-01 10 126692042 126692042 C T CTBP2 Missense_Mutation p.M566I 0.39 deleterious(0) probably_damaging(0.922) TCGA-NA-A4QX-01 11 117073631 117073631 C T TAGLN 5'UTR 0.57 TCGA-NA-A4QX-01 11 67354054 67354054 G - GSTP1 3'UTR 0.13 TCGA-NA-A4QX-01 14 31817004 31817004 T C HEATR5A Missense_Mutation p.I647V 0.53 tolerated(1) benign(0.001) TCGA-NA-A4QX-01 15 25328812 25328812 G A SNORD116-17 RNA 0.50 TCGA-NA-A4QX-01 15 43891378 43891378 C T CKMT1B Silent p.I387I 0.52 TCGA-NA-A4QX-01 15 93524635 93524635 G T CHD2 Missense_Mutation p.R1005I 0.20 deleterious(0) possibly_damaging(0.806) TCGA-NA-A4QX-01 15 93524636 93524636 A T CHD2 Missense_Mutation p.R1005S 0.20 deleterious(0.01) possibly_damaging(0.852) TCGA-NA-A4QX-01 16 21658474 21658476 CCT - IGSF6 In_Frame_Del p.G136del 0.34 TCGA-NA-A4QX-01 16 3707025 3707025 C T DNASE1 Silent p.P154P 0.15 TCGA-NA-A4QX-01 16 68200785 68200785 T C NFATC3 Silent p.D547D 0.39 TCGA-NA-A4QX-01 17 18023599 18023599 G A MYO15A Silent p.V495V 0.77 TCGA-NA-A4QX-01 17 21320026 21320026 G A KCNJ12 3'UTR 0.21 TCGA-NA-A4QX-01 17 7578402 7578403 - T TP53 Nonsense_Mutation p.C176* 0.37 TCGA-NA-A4QX-01 19 38230644 38230644 C T ZNF573 Silent p.Q249Q 0.09 TCGA-NA-A4QX-01 19 38910572 38910572 G T RASGRP4 Missense_Mutation p.F197L 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-NA-A4QX-01 19 52716212 52716212 C T PPP2R1A Missense_Mutation p.S219L 0.77 deleterious(0) probably_damaging(0.928) TCGA-NA-A4QX-01 19 58152473 58152476 CAAA - ZNF211 Frame_Shift_Del p.T273Gfs*33 0.38 TCGA-NA-A4QX-01 1 24186288 24186288 C T FUCA1 Silent p.K256K 0.23 TCGA-NA-A4QX-01 21 34053869 34053869 G A SYNJ1 Silent p.S469S 0.26 TCGA-NA-A4QX-01 2 179478877 179478877 A T TTN Missense_Mutation p.I16416N 0.53 TCGA-NA-A4QX-01 2 27799908 27799908 G A C2orf16 Missense_Mutation p.A157T 0.18 tolerated(0.94) benign(0.069) TCGA-NA-A4QX-01 3 114014628 114014628 G A TIGIT Missense_Mutation p.V100M 0.46 tolerated(0.43) benign(0.003) TCGA-NA-A4QX-01 3 12531437 12531437 C T TSEN2 Silent p.N46N 0.43 TCGA-NA-A4QX-01 3 130284093 130284093 C T COL6A6 Missense_Mutation p.A306V 0.42 deleterious(0.01) possibly_damaging(0.901) TCGA-NA-A4QX-01 3 38738892 38738892 A G SCN10A Missense_Mutation p.I1940T 0.27 tolerated_low_confidence(0.68) benign(0.003) TCGA-NA-A4QX-01 4 153247288 153247288 C A FBXW7 Missense_Mutation p.R505L 0.24 deleterious(0) probably_damaging(1) TCGA-NA-A4QX-01 5 140573707 140573707 G T PCDHB10 Nonsense_Mutation p.E528* 0.06 TCGA-NA-A4QX-01 5 36686177 36686177 C T SLC1A3 Missense_Mutation p.R479W 0.26 deleterious(0) probably_damaging(1) TCGA-NA-A4QX-01 5 67589579 67589596 AAATTACATGAATATAAC - PIK3R1 In_Frame_Del p.K448_N453del 0.34 TCGA-NA-A4QX-01 7 2274828 2274828 T C FTSJ2 Missense_Mutation p.R224G 0.33 deleterious(0) probably_damaging(1) TCGA-NA-A4QX-01 7 30921881 30921881 C T FAM188B Missense_Mutation p.P686L 0.46 tolerated(0.16) benign(0.009) TCGA-NA-A4QX-01 7 74197924 74197924 G C NCF1 Missense_Mutation p.E211Q 0.20 deleterious(0) probably_damaging(0.991) TCGA-NA-A4QX-01 7 95775911 95775911 G A SLC25A13 Missense_Mutation p.A471V 0.35 tolerated(0.13) possibly_damaging(0.758) TCGA-NA-A4QX-01 7 97617777 97617777 G A OCM2 Missense_Mutation p.R49W 0.37 deleterious(0.04) possibly_damaging(0.707) TCGA-NA-A4QX-01 9 97218544 97218544 G A HIATL1 Missense_Mutation p.V351M 0.55 tolerated(0.06) possibly_damaging(0.577) TCGA-NA-A4QX-01 X 153051890 153051890 G A IDH3G Silent p.T313T 0.45 TCGA-NA-A4QX-01 X 153649045 153649045 G C TAZ Missense_Mutation p.E250Q 0.20 tolerated(0.14) benign(0.055) TCGA-NA-A4QX-01 X 153716854 153716854 C T SLC10A3 Silent p.L142L 0.37 TCGA-NA-A4QX-01 X 18338512 18338512 C A SCML2 Silent p.P142P 0.30 TCGA-NA-A4QX-01 X 50351176 50351176 G A SHROOM4 Missense_Mutation p.A989V 0.46 deleterious(0.05) benign(0.025) TCGA-NA-A4QX-01 X 64719785 64719785 T C ZC3H12B Silent p.L336L 0.43 TCGA-NA-A4QY-01 10 101715317 101715317 C G DNMBP Silent p.V638V 0.12 TCGA-NA-A4QY-01 10 132891416 132891416 T C TCERG1L 3'UTR 0.45 TCGA-NA-A4QY-01 10 24762746 24762746 G A KIAA1217 Missense_Mutation p.S479N 0.20 tolerated(0.29) benign(0.012) TCGA-NA-A4QY-01 10 52390195 52390195 T C RP11-50E11.3 RNA 0.55 TCGA-NA-A4QY-01 11 100999426 100999427 - C PGR Frame_Shift_Ins p.Q126Afs*58 0.43 TCGA-NA-A4QY-01 11 22396405 22396405 G A SLC17A6 Silent p.T382T 0.27 TCGA-NA-A4QY-01 11 67926336 67926336 C G SUV420H1 Missense_Mutation p.D493H 0.51 deleterious(0) possibly_damaging(0.67) TCGA-NA-A4QY-01 13 111287884 111287884 G A CARKD Missense_Mutation p.V241M 0.11 deleterious(0) probably_damaging(0.975) TCGA-NA-A4QY-01 13 113750979 113750979 G A MCF2L Intron 0.25 TCGA-NA-A4QY-01 15 85259282 85259282 C T SEC11A Missense_Mutation p.D9N 0.35 tolerated(0.08) possibly_damaging(0.747) TCGA-NA-A4QY-01 15 86312852 86312852 G C KLHL25 Missense_Mutation p.L64V 0.31 deleterious(0) probably_damaging(0.994) TCGA-NA-A4QY-01 15 91172709 91172709 G A CRTC3 Missense_Mutation p.G404D 0.33 tolerated(0.08) benign(0.424) TCGA-NA-A4QY-01 17 27009799 27009799 G T SUPT6H Missense_Mutation p.R551L 0.22 deleterious(0) possibly_damaging(0.483) TCGA-NA-A4QY-01 17 43907499 43907499 C A CRHR1 Silent p.L187L 0.48 TCGA-NA-A4QY-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.76 deleterious(0) probably_damaging(0.999) TCGA-NA-A4QY-01 17 9631744 9631744 C T USP43 Missense_Mutation p.P937S 0.33 tolerated(0.36) benign(0.02) TCGA-NA-A4QY-01 19 39869208 39869208 C T SAMD4B Silent p.I503I 0.16 TCGA-NA-A4QY-01 19 45368618 45368632 TTCCTGGACTGTACA - PVRL2 In_Frame_Del p.P61_I65del 0.30 TCGA-NA-A4QY-01 19 53057634 53057634 C T ZNF808 Missense_Mutation p.R489C 0.23 deleterious(0) benign(0.034) TCGA-NA-A4QY-01 1 169391086 169391086 A T CCDC181 Missense_Mutation p.F195I 0.38 tolerated(0.61) benign(0.006) TCGA-NA-A4QY-01 1 228595913 228595913 C T TRIM17 Missense_Mutation p.V475M 0.15 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-NA-A4QY-01 1 229763491 229763492 - G URB2 Frame_Shift_Ins p.P38Afs*3 0.12 TCGA-NA-A4QY-01 1 24417411 24417411 G A MYOM3 Silent p.G436G 0.37 TCGA-NA-A4QY-01 1 27106580 27106580 T G ARID1A Missense_Mutation p.L2064R 0.45 probably_damaging(0.997) TCGA-NA-A4QY-01 1 37291395 37291395 G C GRIK3 Missense_Mutation p.I521M 0.06 deleterious(0) probably_damaging(1) TCGA-NA-A4QY-01 1 40148381 40148381 C T HPCAL4 Missense_Mutation p.V135M 0.36 tolerated(0.3) probably_damaging(0.995) TCGA-NA-A4QY-01 20 5919371 5919371 A C TRMT6 Missense_Mutation p.V435G 0.16 deleterious(0) probably_damaging(0.992) TCGA-NA-A4QY-01 21 45544547 45544547 G A PWP2 Missense_Mutation p.R635H 0.09 deleterious(0.01) benign(0.302) TCGA-NA-A4QY-01 22 19196494 19196494 G C CLTCL1 Missense_Mutation p.S1127C 0.70 deleterious(0.04) probably_damaging(0.964) TCGA-NA-A4QY-01 22 19961226 19961226 G A ARVCF Missense_Mutation p.R727C 0.18 tolerated(0.24) benign(0.053) TCGA-NA-A4QY-01 22 29695296 29695296 C - EWSR1 Frame_Shift_Del p.L557Sfs*74 0.33 TCGA-NA-A4QY-01 2 130832836 130832836 G A POTEF Missense_Mutation p.R737C 0.19 tolerated_low_confidence(0.28) benign(0) TCGA-NA-A4QY-01 2 179737016 179737016 A C CCDC141 Missense_Mutation p.D641E 0.30 tolerated(0.08) benign(0.001) TCGA-NA-A4QY-01 2 18765801 18765801 C T NT5C1B Silent p.P294P 0.45 TCGA-NA-A4QY-01 2 97215506 97215506 C G ARID5A Missense_Mutation p.I92M 0.35 tolerated(0.22) probably_damaging(0.981) TCGA-NA-A4QY-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.89 tolerated(0.11) possibly_damaging(0.529) TCGA-NA-A4QY-01 3 33552148 33552148 T A CLASP2 Missense_Mutation p.N1415Y 0.29 deleterious(0) probably_damaging(1) TCGA-NA-A4QY-01 3 47889849 47889849 A G DHX30 Silent p.Q822Q 0.31 TCGA-NA-A4QY-01 4 3225847 3225847 C T HTT Missense_Mutation p.P2585L 0.23 benign(0.222) TCGA-NA-A4QY-01 5 140517419 140517419 C T PCDHB5 3'UTR 0.30 TCGA-NA-A4QY-01 5 38451444 38451444 C T EGFLAM Silent p.F865F 0.29 TCGA-NA-A4QY-01 6 34101204 34101204 C T GRM4 Missense_Mutation p.G24S 0.54 tolerated_low_confidence(0.43) benign(0.001) TCGA-NA-A4QY-01 6 56391251 56391251 C T DST Missense_Mutation p.V3390I 0.31 benign(0.045) TCGA-NA-A4QY-01 6 71501409 71501409 T A SMAP1 Silent p.A144A 0.46 TCGA-NA-A4QY-01 7 116340188 116340188 G T MET Missense_Mutation p.K350N 0.45 deleterious(0.01) benign(0.353) TCGA-NA-A4QY-01 7 41729399 41729399 C T INHBA Missense_Mutation p.R377H 0.41 deleterious(0) probably_damaging(0.994) TCGA-NA-A4QY-01 7 57188629 57188629 C G ZNF479 Missense_Mutation p.V165L 0.30 deleterious(0) benign(0.141) TCGA-NA-A4QY-01 7 72988397 72988397 G T TBL2 Missense_Mutation p.A106D 0.18 deleterious(0) probably_damaging(0.992) TCGA-NA-A4QY-01 8 100975208 100975208 T A RGS22 Splice_Site p.X1206_splice 0.12 TCGA-NA-A4QY-01 8 135524778 135524778 C T ZFAT Missense_Mutation p.V1101I 0.14 tolerated(0.15) benign(0.403) TCGA-NA-A4QY-01 8 25167977 25167977 A T DOCK5 Missense_Mutation p.N416I 0.47 deleterious(0) benign(0.09) TCGA-NA-A4QY-01 8 35583958 35583958 A G UNC5D Missense_Mutation p.Q531R 0.38 tolerated(0.27) benign(0.004) TCGA-NA-A4QY-01 9 136305578 136305578 G A ADAMTS13 Missense_Mutation p.E634K 0.44 tolerated(0.19) benign(0.002) TCGA-NA-A4QY-01 X 50659329 50659329 C T BMP15 Missense_Mutation p.R301C 0.53 tolerated(0.09) probably_damaging(0.953) TCGA-NA-A4R0-01 10 101491747 101491747 G A COX15 Silent p.L20L 0.24 TCGA-NA-A4R0-01 10 26434431 26434431 C A MYO3A Missense_Mutation p.L825I 0.13 deleterious(0.04) benign(0.049) TCGA-NA-A4R0-01 11 101362360 101362360 G A TRPC6 Missense_Mutation p.T352M 0.28 tolerated(0.05) benign(0.003) TCGA-NA-A4R0-01 11 129321401 129321401 G A BARX2 3'UTR 0.18 TCGA-NA-A4R0-01 11 64519437 64519437 C T PYGM Missense_Mutation p.R576Q 0.09 deleterious(0) possibly_damaging(0.733) TCGA-NA-A4R0-01 11 65266213 65266213 A T MALAT1 RNA 0.08 TCGA-NA-A4R0-01 12 120652778 120652778 C T PXN Silent p.T390T 0.14 TCGA-NA-A4R0-01 12 53162588 53162588 C A KRT76 Missense_Mutation p.G609V 0.13 tolerated_low_confidence(0.2) unknown(0) TCGA-NA-A4R0-01 12 57111096 57111096 T C NACA Intron 0.31 TCGA-NA-A4R0-01 12 57882857 57882857 C T MARS Silent p.S55S 0.13 TCGA-NA-A4R0-01 12 72058235 72058235 T C THAP2 5'UTR 0.10 TCGA-NA-A4R0-01 14 45636162 45636162 C A FANCM Missense_Mutation p.Q600K 0.24 deleterious(0.01) benign(0.029) TCGA-NA-A4R0-01 15 23931765 23931765 C G NDN Silent p.V200V 0.21 TCGA-NA-A4R0-01 15 24921416 24921416 G A NPAP1 Silent p.A134A 0.12 TCGA-NA-A4R0-01 15 56209012 56209012 T A NEDD4 Silent p.R6R 0.10 TCGA-NA-A4R0-01 15 69553589 69553589 G C GLCE Missense_Mutation p.W250C 0.16 deleterious(0) probably_damaging(0.998) TCGA-NA-A4R0-01 16 23654275 23654275 G C DCTN5 Splice_Site p.X17_splice 0.16 TCGA-NA-A4R0-01 16 4750876 4750876 G A ANKS3 Intron 0.13 TCGA-NA-A4R0-01 16 57795055 57795055 G C KIFC3 Missense_Mutation p.T634R 0.11 deleterious(0) possibly_damaging(0.693) TCGA-NA-A4R0-01 17 56386441 56386441 C T BZRAP1 Missense_Mutation p.G1398R 0.31 deleterious(0.01) probably_damaging(0.96) TCGA-NA-A4R0-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.25 deleterious(0) probably_damaging(1) TCGA-NA-A4R0-01 17 9804444 9804444 G T RCVRN Intron 0.19 TCGA-NA-A4R0-01 18 48573424 48573425 AT - SMAD4 Frame_Shift_Del p.M4Vfs*9 0.22 TCGA-NA-A4R0-01 19 19654969 19654969 C G CILP2 Missense_Mutation p.P539A 0.15 deleterious(0.04) probably_damaging(0.962) TCGA-NA-A4R0-01 19 36499487 36499487 C G SYNE4 Missense_Mutation p.V33L 0.06 tolerated_low_confidence(0.09) possibly_damaging(0.872) TCGA-NA-A4R0-01 19 37210154 37210154 T C ZNF567 Silent p.T145T 0.20 TCGA-NA-A4R0-01 19 37734477 37734477 G A ZNF383 Missense_Mutation p.E447K 0.55 deleterious(0.05) benign(0.013) TCGA-NA-A4R0-01 19 41009734 41009734 C G SPTBN4 Intron 0.13 TCGA-NA-A4R0-01 19 41628015 41628015 T A CYP2F1 Missense_Mutation p.C267S 0.38 tolerated(0.23) benign(0.103) TCGA-NA-A4R0-01 1 154186393 154186393 C G C1orf43 Missense_Mutation p.A106P 0.24 deleterious(0) possibly_damaging(0.835) TCGA-NA-A4R0-01 1 157665945 157665945 C A FCRL3 Silent p.L339L 0.26 TCGA-NA-A4R0-01 1 207195758 207195758 C - C1orf116 Frame_Shift_Del p.A451Qfs*5 0.11 TCGA-NA-A4R0-01 1 21100010 21100010 C A HP1BP3 Missense_Mutation p.Q148H 0.27 tolerated(0.13) probably_damaging(0.965) TCGA-NA-A4R0-01 1 226109286 226109286 C T RP4-559A3.7 Missense_Mutation p.R126H 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.873) TCGA-NA-A4R0-01 1 24120731 24120731 C G LYPLA2 Silent p.L129L 0.13 TCGA-NA-A4R0-01 20 47605195 47605195 G A ARFGEF2 Silent p.K843K 0.19 TCGA-NA-A4R0-01 22 38470949 38470949 G A PICK1 Missense_Mutation p.R353Q 0.44 tolerated(0.18) benign(0.007) TCGA-NA-A4R0-01 2 121732502 121732502 C A GLI2 Silent p.G395G 0.17 TCGA-NA-A4R0-01 2 160801542 160801542 C A PLA2R1 Missense_Mutation p.G1340V 0.27 tolerated(0.08) possibly_damaging(0.856) TCGA-NA-A4R0-01 2 220134932 220134932 C G TUBA4B RNA 0.25 TCGA-NA-A4R0-01 2 85822893 85822893 T C RNF181 Missense_Mutation p.S3P 0.12 deleterious(0.02) probably_damaging(0.961) TCGA-NA-A4R0-01 3 13896248 13896248 G A WNT7A Silent p.H117H 0.17 TCGA-NA-A4R0-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.25 deleterious(0.02) probably_damaging(0.965) TCGA-NA-A4R0-01 3 38798315 38798315 T G SCN10A Silent p.V380V 0.11 TCGA-NA-A4R0-01 4 111430866 111430866 C T ENPEP Missense_Mutation p.T366M 0.15 deleterious(0) probably_damaging(0.997) TCGA-NA-A4R0-01 4 134071191 134071191 G A PCDH10 5'UTR 0.13 TCGA-NA-A4R0-01 4 39408897 39408897 T C KLB Missense_Mutation p.W110R 0.26 deleterious(0) probably_damaging(1) TCGA-NA-A4R0-01 4 71859527 71859527 G A DCK 5'UTR 0.23 TCGA-NA-A4R0-01 5 140214339 140214339 A G PCDHA7 Missense_Mutation p.K124R 0.08 tolerated_low_confidence(0.31) benign(0.001) TCGA-NA-A4R0-01 5 140754980 140754980 G A PCDHGA6 Missense_Mutation p.D444N 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NA-A4R0-01 5 82940357 82940357 G A HAPLN1 Silent p.G200G 0.24 TCGA-NA-A4R0-01 6 1395117 1395117 C T FOXF2 3'UTR 0.30 TCGA-NA-A4R0-01 6 149395011 149395011 C A UST Missense_Mutation p.T327N 0.29 tolerated(0.48) benign(0.021) TCGA-NA-A4R0-01 7 148718139 148718139 T C PDIA4 Silent p.G63G 0.24 TCGA-NA-A4R0-01 7 53103788 53103788 G A POM121L12 Missense_Mutation p.A142T 0.16 tolerated(0.24) probably_damaging(0.913) TCGA-NA-A4R0-01 7 73245572 73245572 C G CLDN4 Missense_Mutation p.A14G 0.07 tolerated(0.32) benign(0.254) TCGA-NA-A4R0-01 7 77378907 77378907 A G RSBN1L Silent p.Q290Q 0.11 TCGA-NA-A4R0-01 8 135521992 135521992 C T ZFAT Missense_Mutation p.G1121D 0.15 deleterious(0.03) probably_damaging(0.941) TCGA-NA-A4R0-01 8 52320810 52320810 C A PXDNL Missense_Mutation p.R1125M 0.21 deleterious(0) probably_damaging(0.93) TCGA-NA-A4R0-01 8 99539092 99539092 T C STK3 Missense_Mutation p.K427E 0.24 tolerated(0.07) benign(0.058) TCGA-NA-A4R0-01 9 109691937 109691937 A G ZNF462 Missense_Mutation p.N1915S 0.25 probably_damaging(0.98) TCGA-NA-A4R0-01 X 10066584 10066584 C A WWC3 Silent p.V232V 0.22 TCGA-NA-A4R0-01 X 101092527 101092527 A T NXF5 Missense_Mutation p.V340E 0.22 deleterious(0) probably_damaging(0.939) TCGA-NA-A4R0-01 X 107408631 107408631 G T COL4A6 Missense_Mutation p.D1260E 0.19 possibly_damaging(0.679) TCGA-NA-A4R0-01 X 117054245 117054245 A G KLHL13 Missense_Mutation p.V113A 0.22 tolerated(1) benign(0.001) TCGA-NA-A4R0-01 X 119249749 119249749 G T RHOXF1 Missense_Mutation p.D8E 0.21 deleterious(0.03) benign(0.02) TCGA-NA-A4R0-01 X 148798278 148798278 G A MAGEA11 Missense_Mutation p.D378N 0.21 tolerated(0.12) benign(0.098) TCGA-NA-A4R0-01 X 53574727 53574727 G T HUWE1 Missense_Mutation p.P3515T 0.22 unknown(0) TCGA-NA-A4R0-01 X 53575115 53575115 G A HUWE1 Silent p.C3385C 0.21 TCGA-NA-A4R1-01 10 105809164 105809165 - A COL17A1 Intron 0.47 TCGA-NA-A4R1-01 10 119042752 119042752 A G PDZD8 3'UTR 0.33 TCGA-NA-A4R1-01 10 135000063 135000063 G A KNDC1 Missense_Mutation p.G404E 0.95 tolerated(0.35) benign(0.099) TCGA-NA-A4R1-01 10 31815734 31815734 G A ZEB1 Missense_Mutation p.G974R 1.00 deleterious(0) probably_damaging(0.938) TCGA-NA-A4R1-01 10 32197365 32197366 - A ARHGAP12 Frame_Shift_Ins p.Y140Lfs*2 0.49 TCGA-NA-A4R1-01 10 61829384 61829384 C A ANK3 Missense_Mutation p.C3752F 0.89 benign(0) TCGA-NA-A4R1-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.98 TCGA-NA-A4R1-01 11 1083268 1083268 G A MUC2 Missense_Mutation p.R723H 0.39 benign(0.023) TCGA-NA-A4R1-01 11 14481798 14481798 G A COPB1 Missense_Mutation p.H868Y 1.00 tolerated(0.07) possibly_damaging(0.862) TCGA-NA-A4R1-01 11 55038189 55038189 G T TRIM48 3'UTR 0.36 TCGA-NA-A4R1-01 11 619490 619490 C A CDHR5 Missense_Mutation p.G426V 0.96 deleterious(0.01) probably_damaging(0.998) TCGA-NA-A4R1-01 11 63438805 63438805 C T ATL3 Translation_Start_Site p.M1? 0.14 tolerated_low_confidence(0.41) benign(0) TCGA-NA-A4R1-01 11 67254583 67254583 A G AIP Missense_Mutation p.K69R 0.40 deleterious(0) probably_damaging(0.999) TCGA-NA-A4R1-01 11 76877132 76877132 A G MYO7A Missense_Mutation p.H574R 0.23 deleterious(0.03) possibly_damaging(0.452) TCGA-NA-A4R1-01 12 122672355 122672355 C A LRRC43 Silent p.P210P 0.69 TCGA-NA-A4R1-01 12 133225985 133225985 G A POLE Silent p.P1304P 0.47 TCGA-NA-A4R1-01 12 56221932 56221932 A G DNAJC14 Missense_Mutation p.Y171H 0.48 deleterious(0.03) probably_damaging(0.949) TCGA-NA-A4R1-01 12 62786091 62786091 A - USP15 Frame_Shift_Del p.K783Nfs*4 0.52 TCGA-NA-A4R1-01 12 99053108 99053108 C T APAF1 Missense_Mutation p.R233C 0.52 deleterious(0.01) benign(0.004) TCGA-NA-A4R1-01 13 21562146 21562147 CT - LATS2 Frame_Shift_Del p.E591Vfs*12 0.36 TCGA-NA-A4R1-01 13 25670421 25670421 G A PABPC3 Missense_Mutation p.E29K 0.50 deleterious(0.01) possibly_damaging(0.473) TCGA-NA-A4R1-01 13 73346315 73346315 G A DIS3 Silent p.L495L 0.50 TCGA-NA-A4R1-01 14 104124027 104124027 C T KLC1 Nonsense_Mutation p.Q136* 0.25 TCGA-NA-A4R1-01 14 23530753 23530753 G A ACIN1 Missense_Mutation p.H1118Y 0.41 possibly_damaging(0.71) TCGA-NA-A4R1-01 14 23891485 23891485 C T MYH7 Missense_Mutation p.R1050Q 0.51 deleterious(0) probably_damaging(0.989) TCGA-NA-A4R1-01 14 24885925 24885925 C T NYNRIN Missense_Mutation p.T1657M 0.49 tolerated(1) benign(0.002) TCGA-NA-A4R1-01 14 35183836 35183836 C T CFL2 5'Flank 0.38 TCGA-NA-A4R1-01 14 45481246 45481246 T A FAM179B Missense_Mutation p.I1069N 0.08 tolerated(0.49) benign(0.001) TCGA-NA-A4R1-01 14 55429738 55429738 G A WDHD1 Silent p.A821A 0.46 TCGA-NA-A4R1-01 14 65270419 65270419 C T SPTB Missense_Mutation p.R127H 0.23 tolerated(0.19) benign(0.219) TCGA-NA-A4R1-01 14 75359578 75359578 G A DLST Missense_Mutation p.A162T 0.41 tolerated(0.34) benign(0.001) TCGA-NA-A4R1-01 15 41796335 41796336 - G LTK Frame_Shift_Ins p.Q819Tfs*16 0.31 TCGA-NA-A4R1-01 15 86122535 86122535 G A AKAP13 Silent p.T412T 0.48 TCGA-NA-A4R1-01 15 86259071 86259071 C T AKAP13 Silent p.T1888T 0.23 TCGA-NA-A4R1-01 16 1270130 1270130 C T CACNA1H Silent p.S2066S 0.77 TCGA-NA-A4R1-01 16 1536186 1536186 G - PTX4 Frame_Shift_Del p.G393Efs*57 0.32 TCGA-NA-A4R1-01 16 17292083 17292083 G A XYLT1 Silent p.A425A 0.14 TCGA-NA-A4R1-01 16 23080502 23080502 C T USP31 Missense_Mutation p.R975H 0.43 tolerated_low_confidence(0.16) benign(0.001) TCGA-NA-A4R1-01 16 3900479 3900479 G A CREBBP Missense_Mutation p.A206V 0.35 possibly_damaging(0.698) TCGA-NA-A4R1-01 17 1582969 1582969 G A PRPF8 Missense_Mutation p.P408L 0.95 deleterious(0) probably_damaging(0.932) TCGA-NA-A4R1-01 17 36707584 36707584 G T SRCIN1 Silent p.T923T 0.50 TCGA-NA-A4R1-01 17 40462724 40462724 G A STAT5A 3'UTR 0.21 TCGA-NA-A4R1-01 17 65134211 65134211 C T HELZ Missense_Mutation p.R930H 0.96 deleterious(0) probably_damaging(0.999) TCGA-NA-A4R1-01 17 73036197 73036197 T C ATP5H Missense_Mutation p.E94G 0.60 deleterious(0.02) benign(0.048) TCGA-NA-A4R1-01 17 73492436 73492436 G A KIAA0195 Missense_Mutation p.A1043T 0.11 tolerated(0.86) benign(0.003) TCGA-NA-A4R1-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.92 deleterious(0) probably_damaging(0.994) TCGA-NA-A4R1-01 18 28651725 28651725 G A DSC2 Silent p.G657G 0.47 TCGA-NA-A4R1-01 18 52265364 52265364 C T DYNAP Silent p.T207T 0.44 TCGA-NA-A4R1-01 18 56274661 56274661 C T ALPK2 Silent p.K40K 0.47 TCGA-NA-A4R1-01 18 672902 672902 C T TYMS Nonsense_Mutation p.R283* 0.49 TCGA-NA-A4R1-01 19 12721752 12721752 T C ZNF791 5'UTR 0.50 TCGA-NA-A4R1-01 19 31040264 31040264 G A ZNF536 Silent p.A1246A 0.64 TCGA-NA-A4R1-01 19 40368843 40368843 C T FCGBP Missense_Mutation p.V4169M 0.08 possibly_damaging(0.867) TCGA-NA-A4R1-01 19 42584536 42584536 G A ZNF574 Missense_Mutation p.R593H 0.32 deleterious(0.02) probably_damaging(0.954) TCGA-NA-A4R1-01 19 47207822 47207822 G A PRKD2 Missense_Mutation p.T199M 0.15 tolerated(0.16) possibly_damaging(0.826) TCGA-NA-A4R1-01 19 49303509 49303509 G A BCAT2 Missense_Mutation p.R116C 0.15 deleterious(0) probably_damaging(0.995) TCGA-NA-A4R1-01 19 50963425 50963425 A - MYBPC2 Frame_Shift_Del p.T976Pfs*76 0.18 TCGA-NA-A4R1-01 19 52327267 52327267 A - FPR3 Frame_Shift_Del p.K90Nfs*11 0.17 TCGA-NA-A4R1-01 19 53116462 53116462 A G ZNF83 Silent p.T452T 0.16 TCGA-NA-A4R1-01 19 55598668 55598668 C T EPS8L1 Intron 0.68 TCGA-NA-A4R1-01 19 57133398 57133398 G A ZNF71 Missense_Mutation p.G248D 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-NA-A4R1-01 1 1391260 1391260 C T ATAD3C Silent p.Y176Y 0.38 TCGA-NA-A4R1-01 1 145075040 145075040 C A PDE4DIP Missense_Mutation p.G85V 0.11 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-NA-A4R1-01 1 1500071 1500071 C T SSU72 Intron 0.47 TCGA-NA-A4R1-01 1 156823762 156823762 C T INSRR Missense_Mutation p.R140H 0.45 deleterious(0.01) probably_damaging(1) TCGA-NA-A4R1-01 1 161200756 161200756 C A NR1I3 Intron 0.49 TCGA-NA-A4R1-01 1 166829507 166829507 T C TADA1 Missense_Mutation p.H203R 0.51 tolerated(0.44) benign(0.004) TCGA-NA-A4R1-01 1 1747258 1747258 G A GNB1 Missense_Mutation p.T47M 0.27 tolerated(0.07) possibly_damaging(0.86) TCGA-NA-A4R1-01 1 17570624 17570624 C T PADI1 Silent p.H626H 0.51 TCGA-NA-A4R1-01 1 176709279 176709279 G A PAPPA2 Silent p.S1366S 0.51 TCGA-NA-A4R1-01 1 183532665 183532665 G A NCF2 Missense_Mutation p.T361M 0.44 deleterious(0) probably_damaging(1) TCGA-NA-A4R1-01 1 190067975 190067975 G A BRINP3 Silent p.L492L 0.18 TCGA-NA-A4R1-01 1 206711576 206711576 G A RASSF5 Missense_Mutation p.R178Q 0.61 tolerated(0.57) benign(0) TCGA-NA-A4R1-01 1 207245739 207245739 C T PFKFB2 3'UTR 0.22 TCGA-NA-A4R1-01 1 210014237 210014237 C A DIEXF Missense_Mutation p.P441Q 0.47 deleterious(0.03) possibly_damaging(0.804) TCGA-NA-A4R1-01 1 228547520 228547520 G A OBSCN Intron 0.31 TCGA-NA-A4R1-01 1 22928123 22928123 C T EPHA8 Silent p.D969D 0.31 TCGA-NA-A4R1-01 1 236399532 236399532 C T ERO1LB Intron 0.49 TCGA-NA-A4R1-01 1 24484264 24484264 G A IFNLR1 Nonsense_Mutation p.R307* 0.51 TCGA-NA-A4R1-01 1 24727829 24727829 C T STPG1 Missense_Mutation p.R17H 0.12 tolerated(0.75) benign(0.001) TCGA-NA-A4R1-01 1 25140694 25140694 G A CLIC4 Missense_Mutation p.V98I 0.61 tolerated(0.11) benign(0.001) TCGA-NA-A4R1-01 1 26669268 26669268 C T AIM1L Missense_Mutation p.G187S 0.48 deleterious(0) probably_damaging(1) TCGA-NA-A4R1-01 1 35250835 35250835 A G GJB3 Missense_Mutation p.M158V 0.54 tolerated(0.53) benign(0.027) TCGA-NA-A4R1-01 1 46751419 46751421 AGA - LRRC41 In_Frame_Del p.S370del 0.22 TCGA-NA-A4R1-01 1 70225900 70225900 C T LRRC7 Missense_Mutation p.R5W 0.50 deleterious(0) probably_damaging(0.993) TCGA-NA-A4R1-01 1 74797186 74797186 T - FPGT-TNNI3K Frame_Shift_Del p.F282Sfs*15 0.52 TCGA-NA-A4R1-01 1 9661177 9661177 C T TMEM201 Silent p.A207A 0.22 TCGA-NA-A4R1-01 1 97217025 97217025 G A PTBP2 Silent p.P28P 0.50 TCGA-NA-A4R1-01 20 22563241 22563241 G C FOXA2 Missense_Mutation p.I213M 0.53 deleterious(0) probably_damaging(1) TCGA-NA-A4R1-01 20 43043173 43043173 C T HNF4A Silent p.N173N 0.35 TCGA-NA-A4R1-01 20 57599552 57599552 C T TUBB1 Missense_Mutation p.P357L 0.40 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-NA-A4R1-01 20 58587675 58587675 A G CDH26 Missense_Mutation p.S797G 0.64 tolerated(0.73) benign(0.023) TCGA-NA-A4R1-01 20 61981956 61981956 G A CHRNA4 Silent p.S269S 0.19 TCGA-NA-A4R1-01 21 45733884 45733885 - TG PFKL Frame_Shift_Ins p.E245Vfs*14 0.38 TCGA-NA-A4R1-01 2 131116491 131116491 G A PTPN18 Missense_Mutation p.V49M 0.40 deleterious(0.01) benign(0.005) TCGA-NA-A4R1-01 2 143718291 143718291 T C KYNU Silent p.T227T 0.19 TCGA-NA-A4R1-01 2 182543459 182543459 G A NEUROD1 Silent p.L43L 0.67 TCGA-NA-A4R1-01 2 235950972 235950972 C T SH3BP4 Missense_Mutation p.A520V 0.21 tolerated(1) benign(0.005) TCGA-NA-A4R1-01 2 242078093 242078093 C T PASK Silent p.S239S 0.37 TCGA-NA-A4R1-01 2 38178932 38178932 A G RMDN2 Missense_Mutation p.T192A 0.48 tolerated_low_confidence(0.3) benign(0.003) TCGA-NA-A4R1-01 2 48925846 48925846 T - LHCGR Frame_Shift_Del p.K258Nfs*16 0.24 TCGA-NA-A4R1-01 2 51254739 51254739 C A NRXN1 Missense_Mutation p.G225C 0.47 deleterious(0.03) benign(0.357) TCGA-NA-A4R1-01 2 95537621 95537621 C T TEKT4 Silent p.H99H 0.16 TCGA-NA-A4R1-01 3 124157839 124157840 - C KALRN Frame_Shift_Ins p.L1051Pfs*14 0.33 TCGA-NA-A4R1-01 3 183818194 183818194 C T HTR3E Missense_Mutation p.R12C 0.45 deleterious_low_confidence(0.03) benign(0.025) TCGA-NA-A4R1-01 3 188590444 188590444 C T LPP Nonsense_Mutation p.R535* 0.96 TCGA-NA-A4R1-01 3 38139340 38139340 G A DLEC1 Missense_Mutation p.A891T 1.00 deleterious(0.03) probably_damaging(0.918) TCGA-NA-A4R1-01 3 65342632 65342632 T C MAGI1 Silent p.R1270R 0.26 TCGA-NA-A4R1-01 3 69093748 69093748 T C TMF1 Splice_Site p.X450_splice 0.24 TCGA-NA-A4R1-01 4 119621741 119621741 C T METTL14 Nonsense_Mutation p.R228* 0.42 TCGA-NA-A4R1-01 4 121957767 121957767 G A NDNF Silent p.I453I 0.52 TCGA-NA-A4R1-01 4 155487137 155487137 G A FGB Missense_Mutation p.A98T 0.51 tolerated(0.18) benign(0.183) TCGA-NA-A4R1-01 4 187509884 187509884 G A FAT1 Silent p.T4543T 0.94 TCGA-NA-A4R1-01 4 70620807 70620807 T - SULT1B1 Frame_Shift_Del p.I43Mfs*16 0.33 TCGA-NA-A4R1-01 4 7725501 7725501 C T SORCS2 Silent p.T834T 0.89 TCGA-NA-A4R1-01 5 10981913 10981913 G A CTNND2 Missense_Mutation p.A1130V 0.27 deleterious(0.03) benign(0.007) TCGA-NA-A4R1-01 5 133292586 133292586 C T C5orf15 Missense_Mutation p.M254I 0.17 deleterious(0) probably_damaging(0.996) TCGA-NA-A4R1-01 5 138456752 138456752 C T SIL1 Silent p.P72P 0.60 TCGA-NA-A4R1-01 5 140011859 140011859 G A CD14 Missense_Mutation p.P237L 0.22 tolerated(0.72) benign(0.411) TCGA-NA-A4R1-01 5 140515250 140515250 T A PCDHB5 Missense_Mutation p.D78E 0.38 tolerated_low_confidence(0.09) benign(0.127) TCGA-NA-A4R1-01 5 140731679 140731679 C T PCDHGB1 Missense_Mutation p.R618C 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-NA-A4R1-01 5 176721178 176721178 C A NSD1 Missense_Mutation p.A2270E 0.48 deleterious_low_confidence(0.02) benign(0.103) TCGA-NA-A4R1-01 5 37008133 37008134 - T NIPBL Frame_Shift_Ins p.V1424Cfs*6 0.19 TCGA-NA-A4R1-01 5 6742670 6742670 C T PAPD7 Missense_Mutation p.T109M 0.56 deleterious(0) probably_damaging(0.993) TCGA-NA-A4R1-01 5 98192247 98192247 T C CHD1 Missense_Mutation p.D1657G 0.29 tolerated_low_confidence(0.35) benign(0.01) TCGA-NA-A4R1-01 6 158900985 158900985 C T TULP4 Missense_Mutation p.T410I 0.32 deleterious(0) possibly_damaging(0.784) TCGA-NA-A4R1-01 6 46623609 46623609 C T SLC25A27 Nonsense_Mutation p.R46* 0.49 TCGA-NA-A4R1-01 6 96053719 96053719 A - MANEA Frame_Shift_Del p.K277Nfs*6 0.12 TCGA-NA-A4R1-01 7 135304341 135304341 T C NUP205 Silent p.P1378P 0.12 TCGA-NA-A4R1-01 7 23347508 23347508 C T MALSU1 Missense_Mutation p.R153C 0.13 tolerated(0.11) benign(0.003) TCGA-NA-A4R1-01 7 44530146 44530146 C T NUDCD3 Silent p.Q18Q 0.67 TCGA-NA-A4R1-01 7 62809663 62809663 C A AC006455.1 5'UTR 0.24 TCGA-NA-A4R1-01 7 72907249 72907249 C T BAZ1B Missense_Mutation p.D192N 0.68 deleterious(0.02) probably_damaging(0.959) TCGA-NA-A4R1-01 7 88963258 88963258 A G ZNF804B Missense_Mutation p.H321R 0.30 tolerated(0.06) benign(0.004) TCGA-NA-A4R1-01 7 91714219 91714219 G A AKAP9 Missense_Mutation p.E2933K 0.32 probably_damaging(0.997) TCGA-NA-A4R1-01 7 91936913 91936914 - A ANKIB1 Frame_Shift_Ins p.N146Kfs*29 0.25 TCGA-NA-A4R1-01 7 98581955 98581955 G A TRRAP Missense_Mutation p.V3092I 0.30 benign(0.273) TCGA-NA-A4R1-01 8 21986672 21986672 C T HR Silent p.T4T 0.43 TCGA-NA-A4R1-01 8 38865443 38865443 A G ADAM9 Missense_Mutation p.I46V 0.47 tolerated(0.79) benign(0.012) TCGA-NA-A4R1-01 8 42275340 42275340 C A SLC20A2 Missense_Mutation p.G647V 0.20 tolerated(0.23) benign(0.018) TCGA-NA-A4R1-01 9 139972957 139972957 C T UAP1L1 Silent p.Y166Y 0.42 TCGA-NA-A4R1-01 9 16419174 16419174 T C BNC2 Missense_Mutation p.N1038S 0.41 tolerated(0.13) benign(0.084) TCGA-NA-A4R1-01 9 19786016 19786016 G A SLC24A2 Silent p.N283N 0.42 TCGA-NA-A4R1-01 9 5787228 5787228 A G ERMP1 Silent p.P877P 0.45 TCGA-NA-A4R1-01 9 85615415 85615415 T C RASEF Missense_Mutation p.Q503R 0.15 tolerated(0.21) benign(0.021) TCGA-NA-A4R1-01 9 97912337 97912337 C T FANCC Missense_Mutation p.R185Q 0.50 tolerated(0.36) benign(0.029) TCGA-NA-A4R1-01 X 103219162 103219162 A G TMSB15B Missense_Mutation p.T23A 0.52 deleterious(0.01) possibly_damaging(0.874) TCGA-NA-A4R1-01 X 112035202 112035202 T - AMOT Frame_Shift_Del p.K595Rfs*29 0.18 TCGA-NA-A4R1-01 X 151935381 151935381 G A MAGEA3 Silent p.P262P 0.23 TCGA-NA-A4R1-01 X 154157053 154157053 C T F8 Missense_Mutation p.R1671H 0.48 tolerated(0.56) benign(0.004) TCGA-NA-A4R1-01 X 21875706 21875707 - A YY2 Frame_Shift_Ins p.N370Kfs*24 0.33 TCGA-NA-A4R1-01 X 46913859 46913859 G A JADE3 Silent p.T424T 0.17 TCGA-NA-A4R1-01 X 54957822 54957822 G T TRO 3'UTR 0.49 TCGA-NA-A4R1-01 X 69607079 69607079 C T KIF4A Missense_Mutation p.R722W 0.33 deleterious(0) possibly_damaging(0.556) TCGA-NA-A4R1-01 X 70344032 70344032 C T MED12 Missense_Mutation p.R590W 0.42 probably_damaging(0.952) TCGA-NA-A4R1-01 X 70519976 70519976 T C NONO 3'UTR 0.33 TCGA-NA-A4R1-01 X 84534384 84534384 A C POF1B 3'UTR 0.41 TCGA-NA-A5I1-01 10 3162118 3162118 G C PFKP Missense_Mutation p.R522P 0.25 deleterious(0) probably_damaging(1) TCGA-NA-A5I1-01 11 15260618 15260618 G C INSC Missense_Mutation p.S511T 0.44 tolerated(0.35) benign(0.217) TCGA-NA-A5I1-01 11 62291941 62291941 G C AHNAK Silent p.P3316P 0.53 TCGA-NA-A5I1-01 11 7984813 7984813 C T NLRP10 Missense_Mutation p.G77D 0.88 tolerated(0.09) benign(0.393) TCGA-NA-A5I1-01 12 30783777 30783777 A G IPO8 3'UTR 0.52 TCGA-NA-A5I1-01 12 56078974 56078976 CTC - ITGA7 In_Frame_Del p.E1098del 0.49 TCGA-NA-A5I1-01 12 56638535 56638535 G A ANKRD52 Missense_Mutation p.R875W 0.26 deleterious(0) possibly_damaging(0.871) TCGA-NA-A5I1-01 12 70963618 70963618 C A PTPRB Silent p.T1157T 0.36 TCGA-NA-A5I1-01 12 7805124 7805124 G A APOBEC1 Missense_Mutation p.R118W 0.49 deleterious(0.02) probably_damaging(1) TCGA-NA-A5I1-01 14 104491922 104491922 T G TDRD9 Missense_Mutation p.W914G 0.29 deleterious(0) probably_damaging(1) TCGA-NA-A5I1-01 15 25475858 25475858 T G SNORD115-33 5'Flank 0.29 TCGA-NA-A5I1-01 16 23366760 23366760 C G SCNN1B Silent p.G242G 0.90 TCGA-NA-A5I1-01 16 58565875 58565875 G C CNOT1 Missense_Mutation p.T2055R 0.88 deleterious(0) possibly_damaging(0.617) TCGA-NA-A5I1-01 16 67404868 67404868 T A LRRC36 Missense_Mutation p.F406Y 0.95 tolerated_low_confidence(0.07) benign(0.045) TCGA-NA-A5I1-01 17 35878950 35878950 G A SYNRG 3'UTR 0.42 TCGA-NA-A5I1-01 17 41582141 41582141 T A DHX8 Missense_Mutation p.L559H 0.69 tolerated(0.08) benign(0.022) TCGA-NA-A5I1-01 17 47696599 47696599 T C SPOP Missense_Mutation p.M117V 0.38 tolerated(0.12) possibly_damaging(0.526) TCGA-NA-A5I1-01 17 48165680 48165680 G A ITGA3 Intron 0.47 TCGA-NA-A5I1-01 17 6941536 6941536 C G SLC16A13 Missense_Mutation p.R137G 0.87 deleterious(0) probably_damaging(1) TCGA-NA-A5I1-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.89 deleterious(0) probably_damaging(1) TCGA-NA-A5I1-01 18 32428344 32428344 G C DTNA Silent p.S390S 0.52 TCGA-NA-A5I1-01 19 33077794 33077794 A T PDCD5 Nonsense_Mutation p.K97* 0.31 TCGA-NA-A5I1-01 19 48382317 48382317 T A SULT2A1 Missense_Mutation p.L181F 0.09 tolerated(0.95) benign(0.233) TCGA-NA-A5I1-01 19 55789014 55789014 G A HSPBP1 Silent p.A137A 0.31 TCGA-NA-A5I1-01 1 152278698 152278698 T G FLG Silent p.G2888G 0.23 TCGA-NA-A5I1-01 1 152325750 152325750 G A FLG2 Silent p.S1504S 0.30 TCGA-NA-A5I1-01 1 217793423 217793423 G A GPATCH2 Missense_Mutation p.R159C 0.53 deleterious(0) probably_damaging(0.999) TCGA-NA-A5I1-01 1 35580612 35580612 A G ZMYM1 Missense_Mutation p.S1061G 0.43 tolerated(0.1) benign(0.071) TCGA-NA-A5I1-01 1 86210421 86210421 G A COL24A1 Missense_Mutation p.P1534S 0.30 deleterious(0) probably_damaging(1) TCGA-NA-A5I1-01 20 56093864 56093864 T C CTCFL Missense_Mutation p.T337A 0.54 deleterious(0) probably_damaging(1) TCGA-NA-A5I1-01 20 61959791 61959791 G A COL20A1 Missense_Mutation p.R1241H 0.35 tolerated(0.53) benign(0) TCGA-NA-A5I1-01 21 46021513 46021513 C A KRTAP10-7 Missense_Mutation p.P331H 0.06 deleterious(0.01) unknown(0) TCGA-NA-A5I1-01 22 21377577 21377577 G T P2RX6 Nonsense_Mutation p.E218* 0.90 TCGA-NA-A5I1-01 2 133541232 133541232 C G NCKAP5 Missense_Mutation p.R1051P 0.41 deleterious(0.05) benign(0.003) TCGA-NA-A5I1-01 2 142237984 142237984 G C LRP1B Missense_Mutation p.D108E 0.41 possibly_damaging(0.841) TCGA-NA-A5I1-01 2 158594952 158594952 C T ACVR1 Silent p.P465P 0.21 TCGA-NA-A5I1-01 2 169404167 169404167 C T CERS6 Missense_Mutation p.P78S 0.39 tolerated(0.08) benign(0.016) TCGA-NA-A5I1-01 2 170025162 170025162 T C LRP2 Missense_Mutation p.Y3841C 0.09 probably_damaging(0.995) TCGA-NA-A5I1-01 2 190636438 190636438 C G ORMDL1 3'UTR 0.47 TCGA-NA-A5I1-01 2 225639777 225639777 G A DOCK10 Missense_Mutation p.T1953M 0.39 deleterious(0.02) possibly_damaging(0.901) TCGA-NA-A5I1-01 2 69870205 69870205 G A AAK1 5'UTR 0.50 TCGA-NA-A5I1-01 3 189681862 189681862 C A LEPREL1 Missense_Mutation p.R640L 0.40 deleterious(0) probably_damaging(1) TCGA-NA-A5I1-01 3 45877083 45877083 G A LZTFL1 Nonsense_Mutation p.R108* 0.41 TCGA-NA-A5I1-01 4 110866382 110866382 A C EGF Silent p.V297V 0.50 TCGA-NA-A5I1-01 5 149498363 149498363 A T PDGFRB Missense_Mutation p.F951I 0.20 deleterious(0) probably_damaging(0.997) TCGA-NA-A5I1-01 6 30711931 30711931 T - IER3 Frame_Shift_Del p.R85Gfs*15 0.34 TCGA-NA-A5I1-01 6 38942307 38942307 T C DNAH8 Splice_Site p.X4061_splice 0.06 TCGA-NA-A5I1-01 7 143049003 143049003 A T CLCN1 Missense_Mutation p.Q971L 0.80 deleterious_low_confidence(0.02) benign(0.075) TCGA-NA-A5I1-01 7 16714153 16714176 TTAGATTATCGTCGCTATGCAGAC AT BZW2 Frame_Shift_Del p.L59Ifs*20 0.46 TCGA-NA-A5I1-01 7 2987238 2987238 G A CARD11 Missense_Mutation p.P64L 0.38 tolerated(0.67) benign(0.02) TCGA-NA-A5I1-01 7 37989841 37989841 A G EPDR1 Missense_Mutation p.Y173C 0.44 deleterious(0) probably_damaging(0.984) TCGA-NA-A5I1-01 7 91570283 91570283 G A AKAP9 5'UTR 0.36 TCGA-NA-A5I1-01 X 107976057 107976057 T A IRS4 Missense_Mutation p.E1173V 0.43 tolerated_low_confidence(0.1) unknown(0) TCGA-NA-A5I1-01 X 131573526 131573526 G T MBNL3 Silent p.A38A 0.19 TCGA-NA-A5I1-01 X 15609873 15609873 C A ACE2 Missense_Mutation p.E182D 0.45 tolerated(0.27) benign(0.002) TCGA-NA-A5I1-01 X 47917842 47917842 T C ZNF630 3'UTR 0.37 TCGA-ND-A4W6-01 10 126716241 126716241 C T CTBP2 Missense_Mutation p.E30K 0.13 tolerated_low_confidence(0.07) benign(0.211) TCGA-ND-A4W6-01 10 3822356 3822356 T - KLF6 Frame_Shift_Del p.T248Pfs*32 0.32 TCGA-ND-A4W6-01 11 125765618 125765618 C G PUS3 Missense_Mutation p.E149Q 0.27 tolerated(0.42) benign(0.027) TCGA-ND-A4W6-01 11 55579557 55579557 G A OR5L1 Silent p.L205L 0.12 TCGA-ND-A4W6-01 11 64374750 64374750 G A NRXN2 Missense_Mutation p.A1686V 0.23 deleterious(0) benign(0.086) TCGA-ND-A4W6-01 11 65810819 65810819 C T GAL3ST3 Missense_Mutation p.R152H 0.24 deleterious(0) probably_damaging(0.999) TCGA-ND-A4W6-01 11 68170953 68170953 G A LRP5 Silent p.V529V 0.18 TCGA-ND-A4W6-01 11 92523240 92523240 G C FAT3 Missense_Mutation p.E1489D 0.27 probably_damaging(0.932) TCGA-ND-A4W6-01 12 4554486 4554486 C T FGF6 Missense_Mutation p.R84Q 0.31 deleterious(0) possibly_damaging(0.78) TCGA-ND-A4W6-01 12 57581077 57581077 A G LRP1 Missense_Mutation p.Y2290C 0.39 probably_damaging(0.999) TCGA-ND-A4W6-01 12 58113962 58113962 G A OS9 Missense_Mutation p.E561K 0.31 deleterious(0) probably_damaging(0.999) TCGA-ND-A4W6-01 12 72338371 72338371 G C TPH2 Missense_Mutation p.E149Q 0.21 tolerated(0.11) benign(0.063) TCGA-ND-A4W6-01 13 31233271 31233271 T C USPL1 Silent p.H1019H 0.14 TCGA-ND-A4W6-01 14 105455303 105455303 T G C14orf79 Missense_Mutation p.I149M 0.13 deleterious(0) possibly_damaging(0.804) TCGA-ND-A4W6-01 14 106320490 106320490 G A IGHM Silent p.N440N 0.57 TCGA-ND-A4W6-01 14 20818779 20818779 G A PARP2 Missense_Mutation p.R153Q 0.11 deleterious(0) probably_damaging(1) TCGA-ND-A4W6-01 14 24040296 24040296 C T JPH4 Silent p.E548E 0.51 TCGA-ND-A4W6-01 14 33292748 33292748 C T AKAP6 Missense_Mutation p.P1910L 0.18 tolerated(1) benign(0) TCGA-ND-A4W6-01 15 42374009 42374009 G C PLA2G4D Silent p.L269L 0.41 TCGA-ND-A4W6-01 15 55931950 55931950 G C PRTG Missense_Mutation p.I738M 0.50 deleterious(0.02) benign(0.219) TCGA-ND-A4W6-01 16 5122951 5122951 G T ALG1 Splice_Site p.X70_splice 0.07 TCGA-ND-A4W6-01 16 55806427 55806427 C G CES1P1 RNA 0.30 TCGA-ND-A4W6-01 16 66944333 66944333 G C CDH16 Missense_Mutation p.T666S 0.59 tolerated(0.13) benign(0.103) TCGA-ND-A4W6-01 16 71823359 71823359 C A AP1G1 Silent p.R8R 0.33 TCGA-ND-A4W6-01 17 10432392 10432392 C T MYH2 Missense_Mutation p.R1120H 0.64 deleterious(0.03) probably_damaging(0.955) TCGA-ND-A4W6-01 17 42268225 42268225 G A TMUB2 Missense_Mutation p.G320E 0.28 tolerated(0.1) possibly_damaging(0.642) TCGA-ND-A4W6-01 17 73096220 73096220 C T SLC16A5 Silent p.L154L 0.22 TCGA-ND-A4W6-01 17 73096514 73096514 C T SLC16A5 Silent p.F252F 0.24 TCGA-ND-A4W6-01 17 73096694 73096694 C G SLC16A5 Silent p.L312L 0.19 TCGA-ND-A4W6-01 17 73096839 73096839 C T SLC16A5 Nonsense_Mutation p.Q361* 0.24 TCGA-ND-A4W6-01 17 73100228 73100228 C G SLC16A5 Missense_Mutation p.F439L 0.18 tolerated(0.69) benign(0.006) TCGA-ND-A4W6-01 17 7577559 7577559 G T TP53 Missense_Mutation p.S241Y 0.52 deleterious(0) probably_damaging(1) TCGA-ND-A4W6-01 18 61654204 61654204 C T SERPINB8 Silent p.L273L 0.27 TCGA-ND-A4W6-01 19 15472610 15472610 C G AKAP8 Missense_Mutation p.K442N 0.55 deleterious(0) probably_damaging(0.994) TCGA-ND-A4W6-01 19 44352095 44352095 C T ZNF283 Nonsense_Mutation p.Q448* 0.40 TCGA-ND-A4W6-01 19 45561130 45561130 A T CLASRP Missense_Mutation p.D196V 0.43 deleterious(0.03) probably_damaging(0.972) TCGA-ND-A4W6-01 19 7585851 7585851 C A ZNF358 3'UTR 0.21 TCGA-ND-A4W6-01 1 10032120 10032120 C A NMNAT1 5'UTR 0.10 TCGA-ND-A4W6-01 1 112234017 112234017 G A RAP1A Missense_Mutation p.G12E 0.55 deleterious(0) probably_damaging(1) TCGA-ND-A4W6-01 1 120302610 120302610 G A HMGCS2 Missense_Mutation p.R188C 0.14 deleterious(0) probably_damaging(0.972) TCGA-ND-A4W6-01 1 150485731 150485731 G A ECM1 Missense_Mutation p.D498N 0.15 tolerated(0.18) benign(0.02) TCGA-ND-A4W6-01 1 152080396 152080396 C T TCHH Missense_Mutation p.R1766H 0.17 unknown(0) TCGA-ND-A4W6-01 1 161143778 161143778 C T B4GALT3 Missense_Mutation p.R184H 0.51 deleterious(0) probably_damaging(0.938) TCGA-ND-A4W6-01 1 167791373 167791375 ACA CC ADCY10 Frame_Shift_Del p.F1391Lfs*36 0.18 TCGA-ND-A4W6-01 1 181702803 181702803 C T CACNA1E Missense_Mutation p.T1060M 0.23 tolerated(0.1) benign(0) TCGA-ND-A4W6-01 1 205126443 205126443 G A DSTYK Silent p.S770S 0.37 TCGA-ND-A4W6-01 1 206821770 206821770 C T DYRK3 Silent p.F409F 0.28 TCGA-ND-A4W6-01 1 226923851 226923851 A T ITPKB Missense_Mutation p.W437R 0.10 tolerated_low_confidence(0.97) benign(0) TCGA-ND-A4W6-01 1 228481947 228481947 G A OBSCN Silent p.P4171P 0.19 TCGA-ND-A4W6-01 1 229461116 229461116 C T CCSAP Missense_Mutation p.E227K 0.32 deleterious(0) probably_damaging(0.981) TCGA-ND-A4W6-01 1 27106465 27106465 C T ARID1A Nonsense_Mutation p.Q2026* 0.48 TCGA-ND-A4W6-01 1 70291497 70291497 A T LRRC7 Missense_Mutation p.N125I 0.24 deleterious(0) probably_damaging(0.997) TCGA-ND-A4W6-01 1 878746 878746 G A SAMD11 Missense_Mutation p.E560K 0.19 deleterious(0) probably_damaging(0.975) TCGA-ND-A4W6-01 20 47269915 47269915 C T PREX1 Missense_Mutation p.R777Q 0.34 tolerated(0.08) benign(0.059) TCGA-ND-A4W6-01 20 61288206 61288206 C T SLCO4A1 Missense_Mutation p.R134C 0.09 deleterious(0) probably_damaging(1) TCGA-ND-A4W6-01 20 61439476 61439476 C T OGFR Intron 0.37 TCGA-ND-A4W6-01 21 10921996 10921996 C T TPTE Splice_Site p.X343_splice 0.26 TCGA-ND-A4W6-01 21 45811363 45811363 C T TRPM2 Missense_Mutation p.A550V 0.36 tolerated(0.36) benign(0.001) TCGA-ND-A4W6-01 22 21344752 21344752 C G LZTR1 Missense_Mutation p.F243L 0.76 deleterious(0) probably_damaging(1) TCGA-ND-A4W6-01 22 24561546 24561546 C T CABIN1 Silent p.F1653F 0.73 TCGA-ND-A4W6-01 2 196573523 196573523 C T SLC39A10 Silent p.I510I 0.28 TCGA-ND-A4W6-01 2 21229150 21229150 C A APOB Silent p.V3530V 0.50 TCGA-ND-A4W6-01 2 51254756 51254756 G A NRXN1 Missense_Mutation p.A219V 0.22 tolerated(0.15) benign(0.002) TCGA-ND-A4W6-01 3 178937422 178937422 T C PIK3CA Missense_Mutation p.C604R 0.27 deleterious(0) possibly_damaging(0.73) TCGA-ND-A4W6-01 3 179095162 179095162 C T MFN1 Nonsense_Mutation p.R419* 0.11 TCGA-ND-A4W6-01 3 44612304 44612304 C T ZKSCAN7 Nonsense_Mutation p.R568* 0.51 TCGA-ND-A4W6-01 3 49154288 49154288 C G USP19 Missense_Mutation p.G333A 0.10 tolerated_low_confidence(0.24) benign(0.217) TCGA-ND-A4W6-01 3 49662661 49662661 C G BSN Missense_Mutation p.Q160E 0.55 unknown(0) TCGA-ND-A4W6-01 4 108866752 108866752 G A CYP2U1 Missense_Mutation p.D373N 0.12 tolerated(0.07) benign(0.192) TCGA-ND-A4W6-01 4 66361138 66361138 C T EPHA5 Missense_Mutation p.R345K 0.26 deleterious(0.03) benign(0) TCGA-ND-A4W6-01 4 71201489 71201489 A C CABS1 Missense_Mutation p.S245R 0.12 deleterious(0.01) benign(0.02) TCGA-ND-A4W6-01 4 82348927 82348927 C G RASGEF1B Missense_Mutation p.V473L 0.19 deleterious_low_confidence(0.04) benign(0.002) TCGA-ND-A4W6-01 5 112876758 112876758 T C YTHDC2 Missense_Mutation p.V435A 0.10 tolerated(1) benign(0) TCGA-ND-A4W6-01 5 140516678 140516678 C T PCDHB5 Silent p.N554N 0.05 TCGA-ND-A4W6-01 5 140615525 140615525 G A PCDHB18 RNA 0.14 TCGA-ND-A4W6-01 5 140719629 140719629 C T PCDHGA2 Missense_Mutation p.T364I 0.12 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-ND-A4W6-01 5 149782827 149782827 G A CD74 Missense_Mutation p.P225L 0.10 tolerated(0.1) possibly_damaging(0.493) TCGA-ND-A4W6-01 5 161113261 161113261 G T GABRA6 Nonsense_Mutation p.E22* 0.32 TCGA-ND-A4W6-01 6 136879965 136879965 C T MAP3K5 Missense_Mutation p.R1346H 0.28 deleterious(0) probably_damaging(0.997) TCGA-ND-A4W6-01 6 151130354 151130354 C A PLEKHG1 Missense_Mutation p.F342L 0.07 deleterious(0) possibly_damaging(0.474) TCGA-ND-A4W6-01 6 152749391 152749391 C G SYNE1 Missense_Mutation p.R1642T 0.17 benign(0.001) TCGA-ND-A4W6-01 6 152831401 152831401 G A SYNE1 Missense_Mutation p.R170W 0.43 probably_damaging(0.994) TCGA-ND-A4W6-01 6 170181480 170181480 C T ERMARD Silent p.Y636Y 0.29 TCGA-ND-A4W6-01 6 34003773 34003773 C T GRM4 Missense_Mutation p.S705N 0.15 tolerated(0.07) benign(0.213) TCGA-ND-A4W6-01 6 42890923 42890923 G A PTCRA Missense_Mutation p.A73T 0.11 deleterious(0.05) benign(0.37) TCGA-ND-A4W6-01 6 56484250 56484250 C T DST Intron 0.35 TCGA-ND-A4W6-01 7 19184880 19184880 C T FERD3L Missense_Mutation p.G36R 0.08 tolerated(0.16) benign(0.017) TCGA-ND-A4W6-01 7 27150322 27150323 - T HOXA3 5'UTR 0.09 TCGA-ND-A4W6-01 7 28547289 28547289 C T CREB5 Silent p.F75F 0.42 TCGA-ND-A4W6-01 7 38402540 38402540 C G TRGV2 Missense_Mutation p.R93S 0.42 tolerated(0.7) benign(0.017) TCGA-ND-A4W6-01 7 38403015 38403015 G A TRGV2 5'UTR 0.11 TCGA-ND-A4W6-01 7 81388026 81388026 C G HGF Missense_Mutation p.D117H 0.56 deleterious(0.04) probably_damaging(1) TCGA-ND-A4W6-01 7 82584377 82584377 C T PCLO Silent p.T1964T 0.16 TCGA-ND-A4W6-01 7 82584412 82584412 C G PCLO Missense_Mutation p.E1953Q 0.09 unknown(0) TCGA-ND-A4W6-01 8 101727709 101727709 C A PABPC1 Missense_Mutation p.K208N 0.08 tolerated(0.11) benign(0.011) TCGA-ND-A4W6-01 8 145749618 145749618 C G LRRC24 Silent p.L161L 0.06 TCGA-ND-A4W6-01 8 27321250 27321250 G A CHRNA2 Missense_Mutation p.T237M 0.43 deleterious(0.04) probably_damaging(0.918) TCGA-ND-A4W6-01 8 56435862 56435862 C T XKR4 Silent p.L343L 0.77 TCGA-ND-A4W6-01 9 37745756 37745756 G T FRMPD1 Missense_Mutation p.D1243Y 0.40 deleterious_low_confidence(0.02) benign(0.316) TCGA-ND-A4W6-01 9 37888412 37888412 C T SLC25A51 Missense_Mutation p.A46T 0.12 tolerated(0.4) benign(0.005) TCGA-ND-A4W6-01 9 84608177 84608177 C A SPATA31D1 Nonsense_Mutation p.S931* 0.21 TCGA-ND-A4W6-01 X 100531442 100531442 C G TAF7L Missense_Mutation p.D342H 0.43 tolerated(0.13) possibly_damaging(0.459) TCGA-ND-A4W6-01 X 105937564 105937564 G A RNF128 Missense_Mutation p.R84K 0.33 tolerated(0.2) benign(0.003) TCGA-ND-A4W6-01 X 141290899 141290899 C G MAGEC2 Missense_Mutation p.S292T 0.28 tolerated(0.14) benign(0.268) TCGA-ND-A4W6-01 X 64141740 64141740 G A ZC4H2 Missense_Mutation p.A61V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4W6-01 X 71684476 71684476 T C HDAC8 Silent p.P281P 0.16 TCGA-ND-A4WA-01 10 99527197 99527197 C T SFRP5 3'UTR 0.42 TCGA-ND-A4WA-01 11 17419890 17419890 C T ABCC8 Missense_Mutation p.R1250Q 0.56 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WA-01 11 4703777 4703777 G A OR51E2 Silent p.H55H 0.07 TCGA-ND-A4WA-01 11 55652898 55652898 C T TRIM51 Intron 0.45 TCGA-ND-A4WA-01 12 10132100 10132100 G A CLEC12A Missense_Mutation p.R129H 0.58 tolerated(0.26) benign(0.198) TCGA-ND-A4WA-01 12 120660787 120660787 C G PXN Missense_Mutation p.Q124H 0.47 tolerated(0.06) benign(0.041) TCGA-ND-A4WA-01 12 129822360 129822360 G A TMEM132D Missense_Mutation p.A373V 0.87 tolerated(0.65) benign(0.001) TCGA-ND-A4WA-01 12 53415537 53415537 G A EIF4B Intron 0.45 TCGA-ND-A4WA-01 13 108518946 108518946 T - FAM155A 5'UTR 0.20 TCGA-ND-A4WA-01 13 39262004 39262004 G T FREM2 Missense_Mutation p.V175F 0.45 deleterious(0) benign(0.071) TCGA-ND-A4WA-01 14 88411975 88411975 C T GALC Missense_Mutation p.R531H 0.45 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WA-01 15 102516500 102516500 C T WASH3P 3'Flank 0.26 TCGA-ND-A4WA-01 15 22848945 22848945 T C TUBGCP5 Missense_Mutation p.I331T 0.49 deleterious(0.01) probably_damaging(0.988) TCGA-ND-A4WA-01 16 15729877 15729877 G A KIAA0430 Missense_Mutation p.S156F 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.789) TCGA-ND-A4WA-01 16 20352470 20352470 T G UMOD Missense_Mutation p.Y507S 0.36 deleterious(0) probably_damaging(0.977) TCGA-ND-A4WA-01 16 28855116 28855116 G T TUFM Missense_Mutation p.P379T 0.40 deleterious(0) probably_damaging(1) TCGA-ND-A4WA-01 17 60758178 60758178 C T MRC2 Missense_Mutation p.R831C 0.28 tolerated(0.17) possibly_damaging(0.462) TCGA-ND-A4WA-01 17 76171208 76171209 CG - TK1 Frame_Shift_Del p.V146Gfs*220 0.16 TCGA-ND-A4WA-01 17 77042776 77042776 G A C1QTNF1 Missense_Mutation p.G99R 0.36 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WA-01 18 13741541 13741541 A G RNMT Silent p.Q275Q 0.26 TCGA-ND-A4WA-01 19 15512057 15512057 G A AKAP8L Silent p.G240G 0.43 TCGA-ND-A4WA-01 19 37677126 37677126 T A ZNF585B Missense_Mutation p.Y438F 0.08 tolerated(0.14) probably_damaging(0.993) TCGA-ND-A4WA-01 19 47424918 47424918 T - ARHGAP35 Frame_Shift_Del p.R997Efs*30 0.24 TCGA-ND-A4WA-01 19 50549834 50549834 C T ZNF473 Missense_Mutation p.R712C 0.35 deleterious(0.02) possibly_damaging(0.898) TCGA-ND-A4WA-01 19 52496399 52496399 G A ZNF615 Nonsense_Mutation p.R655* 0.68 TCGA-ND-A4WA-01 19 6678426 6678426 G A C3 Silent p.D1557D 0.52 TCGA-ND-A4WA-01 1 176838076 176838076 C A ASTN1 Missense_Mutation p.G1184V 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-ND-A4WA-01 1 17966763 17966763 G T ARHGEF10L Missense_Mutation p.W746C 1.00 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WA-01 1 247200730 247200730 G A ZNF670 3'UTR 0.95 TCGA-ND-A4WA-01 1 47495700 47495700 T C CYP4X1 Silent p.I72I 0.46 TCGA-ND-A4WA-01 1 52258048 52258048 C A NRD1 Splice_Site p.X1009_splice 0.38 TCGA-ND-A4WA-01 1 55527145 55527145 G A PCSK9 Silent p.E593E 0.56 TCGA-ND-A4WA-01 21 45217427 45217427 G A RRP1 Missense_Mutation p.E183K 0.49 tolerated(1) benign(0.01) TCGA-ND-A4WA-01 2 113089467 113089467 C T ZC3H6 Missense_Mutation p.A991V 0.44 tolerated(0.25) benign(0) TCGA-ND-A4WA-01 2 166019317 166019317 G A SCN3A Missense_Mutation p.A239V 0.33 deleterious(0) probably_damaging(0.98) TCGA-ND-A4WA-01 2 187615972 187615972 G A FAM171B Missense_Mutation p.R279H 0.25 tolerated(0.57) benign(0.001) TCGA-ND-A4WA-01 2 198950127 198950127 A T PLCL1 Missense_Mutation p.E629V 0.22 tolerated(0.07) probably_damaging(0.925) TCGA-ND-A4WA-01 2 219508021 219508021 T C ZNF142 Missense_Mutation p.N1073S 0.18 tolerated(0.68) benign(0.292) TCGA-ND-A4WA-01 3 122420030 122420030 G A PARP14 Missense_Mutation p.V877M 0.18 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WA-01 3 160137275 160137275 G C SMC4 Missense_Mutation p.D601H 0.63 deleterious(0) possibly_damaging(0.622) TCGA-ND-A4WA-01 3 190967905 190967905 G A OSTN Missense_Mutation p.G133S 0.41 deleterious(0) probably_damaging(1) TCGA-ND-A4WA-01 3 20082165 20082165 G T KAT2B Nonsense_Mutation p.G66* 0.21 TCGA-ND-A4WA-01 3 38949535 38949535 G C SCN11A Missense_Mutation p.L460V 0.42 tolerated(0.29) benign(0.098) TCGA-ND-A4WA-01 3 50273760 50273760 A C GNAI2 5'UTR 0.44 TCGA-ND-A4WA-01 4 123374885 123374885 C T IL2 Missense_Mutation p.V111I 0.46 tolerated(0.13) benign(0.349) TCGA-ND-A4WA-01 4 129128488 129128488 C T LARP1B Missense_Mutation p.L833F 0.53 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WA-01 5 179251284 179251284 C T SQSTM1 Missense_Mutation p.R212C 0.40 deleterious(0.02) benign(0.386) TCGA-ND-A4WA-01 5 7709333 7709333 C T ADCY2 Missense_Mutation p.R471W 0.37 deleterious(0.02) benign(0.006) TCGA-ND-A4WA-01 6 109775014 109775014 C T MICAL1 Missense_Mutation p.R98Q 0.67 deleterious(0) probably_damaging(1) TCGA-ND-A4WA-01 6 123102370 123102370 G T FABP7 Intron 0.14 TCGA-ND-A4WA-01 6 26271424 26271424 G A HIST1H3G Silent p.I63I 0.32 TCGA-ND-A4WA-01 6 52884097 52884097 T G ICK Missense_Mutation p.K140T 0.22 deleterious(0) probably_damaging(1) TCGA-ND-A4WA-01 7 142985470 142985470 G - CASP2 5'UTR 0.41 TCGA-ND-A4WA-01 7 84628909 84628909 G A SEMA3D Silent p.L727L 0.31 TCGA-ND-A4WA-01 8 110457553 110457553 A - PKHD1L1 Frame_Shift_Del p.G1820Afs*7 0.26 TCGA-ND-A4WA-01 X 100079128 100079128 C A CSTF2 Missense_Mutation p.T195K 0.27 tolerated(0.06) benign(0.156) TCGA-ND-A4WA-01 X 152710335 152710335 C T TREX2 Missense_Mutation p.S185N 0.71 tolerated(0.3) benign(0) TCGA-ND-A4WA-01 X 153590696 153590696 G A FLNA Missense_Mutation p.T857M 0.29 deleterious(0) possibly_damaging(0.799) TCGA-ND-A4WA-01 X 17750472 17750472 A G NHS Missense_Mutation p.Y1594C 0.57 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WA-01 X 34962328 34962328 G A FAM47B Silent p.S460S 0.43 TCGA-ND-A4WA-01 X 47101057 47101057 G T USP11 Nonsense_Mutation p.E423* 0.50 TCGA-ND-A4WA-01 X 70147405 70147405 C T SLC7A3 Missense_Mutation p.R371H 0.28 tolerated(0.05) benign(0.052) TCGA-ND-A4WA-01 X 70149861 70149863 GAA - SLC7A3 5'UTR 0.28 TCGA-ND-A4WA-01 X 77298882 77298882 A C ATP7A Missense_Mutation p.N1358T 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WA-01 X 83359667 83359667 T A RPS6KA6 Splice_Site p.X486_splice 0.46 TCGA-ND-A4WA-01 X 91090729 91090729 C T PCDH11X Nonsense_Mutation p.R76* 0.34 TCGA-ND-A4WC-01 10 100189343 100189343 G A HPS1 Silent p.G308G 0.27 TCGA-ND-A4WC-01 10 101124759 101124759 C T CNNM1 Silent p.L726L 0.47 TCGA-ND-A4WC-01 10 101157417 101157417 C A GOT1 Nonsense_Mutation p.E377* 0.34 TCGA-ND-A4WC-01 10 101473092 101473092 G A COX15 3'Flank 0.26 TCGA-ND-A4WC-01 10 101556891 101556891 G A ABCC2 Missense_Mutation p.E224K 0.32 tolerated(0.83) benign(0.034) TCGA-ND-A4WC-01 10 101605492 101605492 T C ABCC2 Missense_Mutation p.S1367P 0.43 tolerated(0.08) probably_damaging(0.959) TCGA-ND-A4WC-01 10 101606730 101606730 T C ABCC2 Missense_Mutation p.F1387L 0.11 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 10 101637071 101637071 A G DNMBP Missense_Mutation p.F1524S 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 10 101816907 101816907 T G CPN1 Missense_Mutation p.M292L 0.32 deleterious(0) possibly_damaging(0.556) TCGA-ND-A4WC-01 10 102222854 102222854 G T WNT8B 5'UTR 0.21 TCGA-ND-A4WC-01 10 102242045 102242045 G T WNT8B Missense_Mutation p.M176I 0.46 deleterious(0.05) benign(0.364) TCGA-ND-A4WC-01 10 102766522 102766522 G A LZTS2 Missense_Mutation p.G536E 0.29 tolerated(0.26) benign(0.349) TCGA-ND-A4WC-01 10 103827660 103827660 C A HPS6 3'UTR 0.37 TCGA-ND-A4WC-01 10 103899139 103899139 A C PPRC1 Missense_Mutation p.M292L 0.08 tolerated(0.38) benign(0.014) TCGA-ND-A4WC-01 10 104130495 104130495 C T GBF1 Nonsense_Mutation p.R1179* 0.29 TCGA-ND-A4WC-01 10 104592872 104592872 C A CYP17A1 Missense_Mutation p.D283Y 0.33 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 10 105037959 105037959 G A INA Missense_Mutation p.G331R 0.31 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 10 105139386 105139386 G T TAF5 Nonsense_Mutation p.E379* 0.23 TCGA-ND-A4WC-01 10 105147069 105147069 T C TAF5 Missense_Mutation p.V656A 0.12 tolerated(0.09) benign(0.175) TCGA-ND-A4WC-01 10 105147784 105147784 G A TAF5 Missense_Mutation p.R736Q 0.31 deleterious(0.03) benign(0.305) TCGA-ND-A4WC-01 10 105158249 105158249 T G PDCD11 Silent p.A22A 0.34 TCGA-ND-A4WC-01 10 105648830 105648830 G A OBFC1 Missense_Mutation p.H317Y 0.36 tolerated(0.35) benign(0.152) TCGA-ND-A4WC-01 10 105882653 105882653 T C SFR1 Intron 0.30 TCGA-ND-A4WC-01 10 105885398 105885398 A G SFR1 Missense_Mutation p.H225R 0.29 tolerated(0.25) possibly_damaging(0.485) TCGA-ND-A4WC-01 10 105907729 105907729 A G WDR96 Missense_Mutation p.F1230L 0.23 tolerated(0.07) benign(0.015) TCGA-ND-A4WC-01 10 105923953 105923953 G A WDR96 Nonsense_Mutation p.R1049* 0.26 TCGA-ND-A4WC-01 10 106209891 106209891 G T CCDC147 Missense_Mutation p.E813D 0.33 tolerated(0.12) benign(0.031) TCGA-ND-A4WC-01 10 112361580 112361580 C T SMC3 Nonsense_Mutation p.R944* 0.30 TCGA-ND-A4WC-01 10 114169443 114169443 G A ACSL5 Silent p.E293E 0.26 TCGA-ND-A4WC-01 10 114912121 114912121 G A TCF7L2 Silent p.A397A 0.30 TCGA-ND-A4WC-01 10 115335708 115335708 G A HABP2 Silent p.G92G 0.32 TCGA-ND-A4WC-01 10 115337894 115337894 C A HABP2 Missense_Mutation p.F186L 0.51 tolerated(0.11) benign(0.232) TCGA-ND-A4WC-01 10 115389405 115389405 A G NRAP Missense_Mutation p.V661A 0.32 tolerated(0.21) benign(0.007) TCGA-ND-A4WC-01 10 115413816 115413816 A G NRAP Silent p.I143I 0.36 TCGA-ND-A4WC-01 10 115489079 115489079 C T CASP7 Missense_Mutation p.S264L 0.31 deleterious(0) probably_damaging(0.943) TCGA-ND-A4WC-01 10 115525067 115525067 T A PLEKHS1 5'UTR 0.33 TCGA-ND-A4WC-01 10 115527103 115527103 G T PLEKHS1 Splice_Site p.X69_splice 0.24 TCGA-ND-A4WC-01 10 115529640 115529640 G T PLEKHS1 Missense_Mutation p.R172I 0.13 deleterious(0.01) probably_damaging(0.953) TCGA-ND-A4WC-01 10 117849401 117849401 C T GFRA1 Missense_Mutation p.D350N 0.24 tolerated(0.06) benign(0.335) TCGA-ND-A4WC-01 10 118307936 118307936 T G PNLIP Missense_Mutation p.F89C 0.14 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 10 118355761 118355761 C A PNLIPRP1 Silent p.L167L 0.33 TCGA-ND-A4WC-01 10 118359564 118359564 C T PNLIPRP1 Missense_Mutation p.R274W 0.26 deleterious(0.02) benign(0.044) TCGA-ND-A4WC-01 10 118434331 118434331 C T HSPA12A Silent p.S663S 0.29 TCGA-ND-A4WC-01 10 119798541 119798541 C A RAB11FIP2 Nonsense_Mutation p.E403* 0.33 TCGA-ND-A4WC-01 10 120450802 120450802 C A CACUL1 Nonsense_Mutation p.E334* 0.29 TCGA-ND-A4WC-01 10 12071012 12071012 T G UPF2 Missense_Mutation p.N293H 0.43 tolerated(0.55) benign(0.142) TCGA-ND-A4WC-01 10 120816463 120816463 C T EIF3A Silent p.K689K 0.30 TCGA-ND-A4WC-01 10 120819636 120819636 C A EIF3A Intron 0.37 TCGA-ND-A4WC-01 10 120877030 120877030 G A FAM45A Splice_Site p.X111_splice 0.37 TCGA-ND-A4WC-01 10 120907363 120907363 C A SFXN4 Nonsense_Mutation p.E248* 0.45 TCGA-ND-A4WC-01 10 12136102 12136102 T C DHTKD1 Missense_Mutation p.V397A 0.18 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 10 121600381 121600381 G A MCMBP Nonsense_Mutation p.R408* 0.38 TCGA-ND-A4WC-01 10 124345687 124345687 A C DMBT1 Missense_Mutation p.D524A 0.22 deleterious(0.01) unknown(0) TCGA-ND-A4WC-01 10 124390744 124390744 G A DMBT1 Missense_Mutation p.G1969D 0.34 tolerated(0.06) probably_damaging(1) TCGA-ND-A4WC-01 10 124594383 124594383 C A CUZD1 Missense_Mutation p.K407N 0.21 tolerated(0.69) benign(0.003) TCGA-ND-A4WC-01 10 124813282 124813282 C T ACADSB 3'UTR 0.33 TCGA-ND-A4WC-01 10 126678217 126678217 A G CTBP2 Missense_Mutation p.M943T 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.546) TCGA-ND-A4WC-01 10 126682453 126682453 G A CTBP2 Silent p.A834A 0.27 TCGA-ND-A4WC-01 10 127418874 127418874 T G EDRF1 Missense_Mutation p.I345S 0.22 deleterious(0) probably_damaging(0.941) TCGA-ND-A4WC-01 10 127569536 127569536 A C DHX32 5'UTR 0.40 TCGA-ND-A4WC-01 10 127668792 127668792 G T FANK1 Nonsense_Mutation p.E26* 0.31 TCGA-ND-A4WC-01 10 127698029 127698029 A T FANK1 3'UTR 0.28 TCGA-ND-A4WC-01 10 128193194 128193194 G T C10orf90 Missense_Mutation p.S192Y 0.27 deleterious(0) benign(0.082) TCGA-ND-A4WC-01 10 128821490 128821490 A C DOCK1 Missense_Mutation p.T431P 0.40 deleterious(0.01) possibly_damaging(0.824) TCGA-ND-A4WC-01 10 129537290 129537290 C T FOXI2 3'UTR 0.24 TCGA-ND-A4WC-01 10 129901190 129901190 C T MKI67 Missense_Mutation p.G2972R 0.27 tolerated_low_confidence(0.14) benign(0.064) TCGA-ND-A4WC-01 10 129906274 129906274 T C MKI67 Missense_Mutation p.D1277G 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 10 13375827 13375827 C A SEPHS1 Nonsense_Mutation p.E184* 0.47 TCGA-ND-A4WC-01 10 134623991 134623991 G A TTC40 Missense_Mutation p.S2529F 0.27 tolerated_low_confidence(0.05) possibly_damaging(0.563) TCGA-ND-A4WC-01 10 135053551 135053551 C A VENTX Missense_Mutation p.S173Y 0.32 tolerated(0.13) benign(0.395) TCGA-ND-A4WC-01 10 135125331 135125331 G A ZNF511 Silent p.R222R 0.26 TCGA-ND-A4WC-01 10 135215056 135215056 G A MTG1 Missense_Mutation p.E179K 0.33 tolerated(0.44) benign(0.311) TCGA-ND-A4WC-01 10 1405395 1405395 C T ADARB2 Missense_Mutation p.R302H 0.23 tolerated(0.93) benign(0.061) TCGA-ND-A4WC-01 10 14572353 14572353 C T FAM107B Missense_Mutation p.E211K 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-ND-A4WC-01 10 14709678 14709678 G A FAM107B Nonsense_Mutation p.R142* 0.41 TCGA-ND-A4WC-01 10 14816376 14816376 C T FAM107B Missense_Mutation p.R96H 0.32 tolerated_low_confidence(1) benign(0) TCGA-ND-A4WC-01 10 14816706 14816706 T A FAM107B 5'UTR 0.32 TCGA-ND-A4WC-01 10 15151156 15151156 A C NMT2 3'UTR 0.36 TCGA-ND-A4WC-01 10 15720728 15720728 A C ITGA8 Missense_Mutation p.F208C 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 10 16878296 16878296 A G CUBN Missense_Mutation p.V3373A 0.29 deleterious(0.02) benign(0.168) TCGA-ND-A4WC-01 10 16948356 16948356 G A CUBN Silent p.G2586G 0.33 TCGA-ND-A4WC-01 10 17195593 17195593 C A TRDMT1 Nonsense_Mutation p.E330* 0.32 TCGA-ND-A4WC-01 10 17365098 17365098 G A ST8SIA6 Missense_Mutation p.L232F 0.31 deleterious(0) probably_damaging(0.976) TCGA-ND-A4WC-01 10 18152462 18152462 G T MRC1 Splice_Site p.X545_splice 0.81 TCGA-ND-A4WC-01 10 18629819 18629819 C A CACNB2 Intron 0.41 TCGA-ND-A4WC-01 10 21074700 21074700 C T NEBL Silent p.A1007A 0.36 TCGA-ND-A4WC-01 10 24820774 24820774 C T KIAA1217 Missense_Mutation p.S1033L 0.41 deleterious(0.04) possibly_damaging(0.71) TCGA-ND-A4WC-01 10 24910202 24910202 G A ARHGAP21 Missense_Mutation p.P208S 0.22 tolerated(0.47) benign(0.001) TCGA-ND-A4WC-01 10 25010911 25010911 G A ARHGAP21 5'UTR 0.40 TCGA-ND-A4WC-01 10 25314002 25314002 A G THNSL1 Missense_Mutation p.D617G 0.39 tolerated(0.72) benign(0.039) TCGA-ND-A4WC-01 10 25887640 25887640 G A GPR158 Missense_Mutation p.V1029I 0.26 deleterious(0.03) possibly_damaging(0.781) TCGA-ND-A4WC-01 10 25887693 25887693 G T GPR158 Missense_Mutation p.E1046D 0.29 tolerated(0.4) benign(0.002) TCGA-ND-A4WC-01 10 25888266 25888266 G T GPR158 3'UTR 0.20 TCGA-ND-A4WC-01 10 26465660 26465660 C A MYO3A Missense_Mutation p.L1442M 0.21 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-ND-A4WC-01 10 27012969 27012969 G T PDSS1 Nonsense_Mutation p.E250* 0.28 TCGA-ND-A4WC-01 10 27035506 27035506 T G PDSS1 3'UTR 0.50 TCGA-ND-A4WC-01 10 27052890 27052890 C A ABI1 Splice_Site p.X274_splice 0.28 TCGA-ND-A4WC-01 10 27411889 27411889 C T YME1L1 Silent p.A429A 0.34 TCGA-ND-A4WC-01 10 27538790 27538790 A G RP11-85G18.6 Intron 0.43 TCGA-ND-A4WC-01 10 27552106 27552106 A C ARMC4P1 RNA 0.18 TCGA-ND-A4WC-01 10 27826849 27826849 G T RAB18 Nonsense_Mutation p.E164* 0.33 TCGA-ND-A4WC-01 10 28023451 28023451 C A MKX Nonsense_Mutation p.E258* 0.34 TCGA-ND-A4WC-01 10 28270421 28270421 T C ARMC4 Missense_Mutation p.K304E 0.31 tolerated(0.31) benign(0.016) TCGA-ND-A4WC-01 10 29769557 29769557 G A SVIL Silent p.F1762F 0.36 TCGA-ND-A4WC-01 10 30728192 30728192 T G MAP3K8 Missense_Mutation p.L109V 0.44 deleterious(0.01) benign(0.311) TCGA-ND-A4WC-01 10 30740639 30740639 A G MAP3K8 Missense_Mutation p.D280G 0.35 tolerated(0.14) benign(0.333) TCGA-ND-A4WC-01 10 32306131 32306131 G A KIF5B Missense_Mutation p.R901C 0.32 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 10 32561054 32561054 A G EPC1 Silent p.F658F 0.36 TCGA-ND-A4WC-01 10 32745259 32745259 A C CCDC7 Missense_Mutation p.Q151H 0.38 tolerated(0.92) benign(0.001) TCGA-ND-A4WC-01 10 35484937 35484937 C A CREM Intron 0.31 TCGA-ND-A4WC-01 10 38242653 38242653 C A ZNF25 Missense_Mutation p.R91I 0.11 tolerated(0.17) benign(0.001) TCGA-ND-A4WC-01 10 38344819 38344819 C A ZNF33A Silent p.I589I 0.30 TCGA-ND-A4WC-01 10 38406445 38406445 A C ZNF37A Missense_Mutation p.K122N 0.29 tolerated(0.3) possibly_damaging(0.559) TCGA-ND-A4WC-01 10 44112192 44112192 G T ZNF485 Missense_Mutation p.R234I 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-ND-A4WC-01 10 44873806 44873806 T C CXCL12 Intron 0.25 TCGA-ND-A4WC-01 10 45936008 45936008 G A ALOX5 Missense_Mutation p.R371Q 0.39 tolerated(0.21) possibly_damaging(0.669) TCGA-ND-A4WC-01 10 46122112 46122112 C A ZFAND4 Nonsense_Mutation p.E387* 0.36 TCGA-ND-A4WC-01 10 46321990 46321990 G A AGAP4 Silent p.H455H 0.55 TCGA-ND-A4WC-01 10 46960136 46960136 A C SYT15 3'Flank 0.25 TCGA-ND-A4WC-01 10 47086821 47086821 A C NPY4R Missense_Mutation p.K13T 0.21 tolerated(0.6) benign(0) TCGA-ND-A4WC-01 10 47087310 47087310 C T NPY4R Missense_Mutation p.A176V 0.19 tolerated(0.84) benign(0.05) TCGA-ND-A4WC-01 10 47087545 47087545 C T NPY4R Silent p.S254S 0.17 TCGA-ND-A4WC-01 10 48388279 48388279 C T RBP3 Missense_Mutation p.V867I 0.26 tolerated(0.5) benign(0.299) TCGA-ND-A4WC-01 10 48389205 48389205 G A RBP3 Missense_Mutation p.S558L 0.32 deleterious(0.02) possibly_damaging(0.905) TCGA-ND-A4WC-01 10 48413860 48413860 G A GDF2 Silent p.F336F 0.30 TCGA-ND-A4WC-01 10 5006036 5006036 T C AKR1C1 Intron 0.15 TCGA-ND-A4WC-01 10 50315677 50315677 G T VSTM4 Missense_Mutation p.T140K 0.40 tolerated(1) probably_damaging(0.976) TCGA-ND-A4WC-01 10 50732662 50732662 C T ERCC6-PGBD3 Missense_Mutation p.E272K 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ND-A4WC-01 10 50819033 50819033 C T SLC18A3 Missense_Mutation p.P83S 0.30 tolerated(0.71) benign(0.062) TCGA-ND-A4WC-01 10 50820378 50820378 G A SLC18A3 Missense_Mutation p.R531H 0.11 tolerated_low_confidence(0.07) benign(0.003) TCGA-ND-A4WC-01 10 50902001 50902001 C A C10orf53 Intron 0.22 TCGA-ND-A4WC-01 10 50943287 50943287 C T OGDHL Missense_Mutation p.G1007D 0.40 tolerated_low_confidence(0.15) benign(0.019) TCGA-ND-A4WC-01 10 50952051 50952051 T C OGDHL Missense_Mutation p.K617R 0.36 tolerated(0.17) benign(0.001) TCGA-ND-A4WC-01 10 52066985 52066985 G A SGMS1 Nonsense_Mutation p.R387* 0.41 TCGA-ND-A4WC-01 10 52389581 52389581 T G RP11-50E11.3 RNA 0.33 TCGA-ND-A4WC-01 10 52390591 52390591 C T RP11-50E11.3 RNA 0.23 TCGA-ND-A4WC-01 10 52601750 52601750 G A A1CF Silent p.I87I 0.30 TCGA-ND-A4WC-01 10 54076093 54076093 G T DKK1 Nonsense_Mutation p.E149* 0.43 TCGA-ND-A4WC-01 10 54076160 54076160 G T DKK1 Missense_Mutation p.R171I 0.08 deleterious(0) possibly_damaging(0.898) TCGA-ND-A4WC-01 10 5435795 5435795 C T TUBAL3 Silent p.T342T 0.34 TCGA-ND-A4WC-01 10 55569282 55569282 G T PCDH15 Missense_Mutation p.P444T 0.08 deleterious(0) unknown(0) TCGA-ND-A4WC-01 10 55626542 55626542 C A PCDH15 Nonsense_Mutation p.E1193* 0.45 TCGA-ND-A4WC-01 10 55944895 55944895 G A PCDH15 Missense_Mutation p.S480L 0.27 tolerated(0.2) benign(0.021) TCGA-ND-A4WC-01 10 55955448 55955448 C A PCDH15 Nonsense_Mutation p.E434* 0.18 TCGA-ND-A4WC-01 10 5944989 5944989 G A FBXO18 Missense_Mutation p.R54Q 0.24 tolerated(0.16) possibly_damaging(0.463) TCGA-ND-A4WC-01 10 59955838 59955838 C A IPMK Nonstop_Mutation p.*417Lext*33 0.30 TCGA-ND-A4WC-01 10 6063552 6063552 C T IL2RA Missense_Mutation p.A158T 0.39 tolerated(0.08) benign(0.231) TCGA-ND-A4WC-01 10 61004994 61004994 A G PHYHIPL Silent p.K258K 0.09 TCGA-ND-A4WC-01 10 61834982 61834982 G A ANK3 Missense_Mutation p.A1886V 0.31 benign(0.176) TCGA-ND-A4WC-01 10 61835651 61835651 A C ANK3 Missense_Mutation p.I1663S 0.31 benign(0.011) TCGA-ND-A4WC-01 10 62553783 62553783 T G CDK1 3'UTR 0.40 TCGA-ND-A4WC-01 10 62670691 62670691 C T RHOBTB1 Missense_Mutation p.D84N 0.42 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 10 63957810 63957810 G A RTKN2 Silent p.L563L 0.28 TCGA-ND-A4WC-01 10 64022496 64022496 C T RTKN2 Missense_Mutation p.D49N 0.23 deleterious(0.05) possibly_damaging(0.735) TCGA-ND-A4WC-01 10 64136203 64136203 A C ZNF365 Missense_Mutation p.K84T 0.39 tolerated_low_confidence(0.13) possibly_damaging(0.604) TCGA-ND-A4WC-01 10 64966708 64966708 G T JMJD1C Missense_Mutation p.S1574Y 0.26 deleterious(0.03) benign(0.013) TCGA-ND-A4WC-01 10 68687299 68687299 G T LRRTM3 Nonsense_Mutation p.E209* 0.34 TCGA-ND-A4WC-01 10 69672420 69672420 G A SIRT1 Missense_Mutation p.R516Q 0.33 tolerated(0.05) benign(0.266) TCGA-ND-A4WC-01 10 69881929 69881929 C T MYPN Missense_Mutation p.A245V 0.33 tolerated(0.35) benign(0.005) TCGA-ND-A4WC-01 10 69935124 69935124 C T MYPN Missense_Mutation p.P870L 0.30 tolerated(0.82) benign(0.001) TCGA-ND-A4WC-01 10 69966634 69966634 C T MYPN Missense_Mutation p.S1256L 0.14 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 10 70045061 70045061 C T PBLD Intron 0.38 TCGA-ND-A4WC-01 10 70332337 70332337 G A TET1 Missense_Mutation p.R81H 0.30 tolerated(0.07) possibly_damaging(0.609) TCGA-ND-A4WC-01 10 70405909 70405909 A G TET1 Silent p.K1141K 0.10 TCGA-ND-A4WC-01 10 70546342 70546342 C T CCAR1 Silent p.L925L 0.35 TCGA-ND-A4WC-01 10 70641820 70641820 A G STOX1 Silent p.V139V 0.32 TCGA-ND-A4WC-01 10 70928317 70928317 A C VPS26A Missense_Mutation p.K267T 0.40 deleterious(0.01) possibly_damaging(0.82) TCGA-ND-A4WC-01 10 71020933 71020933 T G HKDC1 Missense_Mutation p.I752S 0.31 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 10 71640268 71640268 G A COL13A1 Missense_Mutation p.G149R 0.28 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 10 7242375 7242375 C T SFMBT2 Splice_Site p.X520_splice 0.32 TCGA-ND-A4WC-01 10 72517751 72517751 C T ADAMTS14 Missense_Mutation p.R994W 0.28 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 10 7285548 7285548 T G SFMBT2 Missense_Mutation p.K364N 0.31 deleterious(0.01) possibly_damaging(0.902) TCGA-ND-A4WC-01 10 73442306 73442306 G A CDH23 Missense_Mutation p.V247I 0.17 tolerated(0.11) probably_damaging(0.998) TCGA-ND-A4WC-01 10 73512742 73512742 G A C10orf54 Missense_Mutation p.R232W 0.33 deleterious(0) possibly_damaging(0.534) TCGA-ND-A4WC-01 10 73544715 73544715 A G CDH23 Missense_Mutation p.N1862S 0.29 tolerated(0.23) benign(0.135) TCGA-ND-A4WC-01 10 73822361 73822361 T G SPOCK2 3'UTR 0.36 TCGA-ND-A4WC-01 10 74127971 74127971 G A MICU1 Silent p.F471F 0.31 TCGA-ND-A4WC-01 10 74293523 74293523 A C MICU1 Missense_Mutation p.I173R 0.38 deleterious(0) benign(0.206) TCGA-ND-A4WC-01 10 74916109 74916109 T G ECD Missense_Mutation p.N172H 0.47 tolerated(0.13) benign(0.009) TCGA-ND-A4WC-01 10 75234763 75234763 T G PPP3CB Missense_Mutation p.K146T 0.09 deleterious(0) probably_damaging(0.993) TCGA-ND-A4WC-01 10 75393727 75393728 - T MYOZ1 Frame_Shift_Ins p.M200Nfs*6 0.22 TCGA-ND-A4WC-01 10 75673107 75673107 T C PLAU Missense_Mutation p.V143A 0.36 tolerated(0.67) benign(0.346) TCGA-ND-A4WC-01 10 75830449 75830449 G A VCL Silent p.K87K 0.32 TCGA-ND-A4WC-01 10 7614359 7614359 G A ITIH5 Intron 0.30 TCGA-ND-A4WC-01 10 76868869 76868869 G A DUSP13 Missense_Mutation p.T16M 0.34 deleterious(0.02) benign(0.175) TCGA-ND-A4WC-01 10 7768987 7768987 G T ITIH2 Missense_Mutation p.Q353H 0.33 tolerated(1) benign(0) TCGA-ND-A4WC-01 10 78868324 78868324 A G KCNMA1 Missense_Mutation p.F380L 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 10 79595622 79595622 C T DLG5 Missense_Mutation p.R499Q 0.27 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 10 8007253 8007253 G T TAF3 Nonsense_Mutation p.E594* 0.42 TCGA-ND-A4WC-01 10 8007600 8007600 G A TAF3 Silent p.K709K 0.33 TCGA-ND-A4WC-01 10 81850826 81850826 C A TMEM254 3'UTR 0.36 TCGA-ND-A4WC-01 10 84745314 84745314 T A NRG3 Missense_Mutation p.F682I 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.853) TCGA-ND-A4WC-01 10 84745429 84745429 T G NRG3 3'Flank 0.34 TCGA-ND-A4WC-01 10 87362273 87362273 G T GRID1 Silent p.T929T 0.11 TCGA-ND-A4WC-01 10 87484239 87484239 A G GRID1 Silent p.V576V 0.35 TCGA-ND-A4WC-01 10 87614322 87614322 C T GRID1 Silent p.S388S 0.35 TCGA-ND-A4WC-01 10 876893 876893 C A LARP4B Missense_Mutation p.D259Y 0.35 deleterious(0) possibly_damaging(0.75) TCGA-ND-A4WC-01 10 88277381 88277381 C T WAPAL Missense_Mutation p.R149Q 0.25 tolerated_low_confidence(0.2) benign(0.001) TCGA-ND-A4WC-01 10 88679129 88679129 G A BMPR1A Missense_Mutation p.A357T 0.37 deleterious(0) probably_damaging(0.972) TCGA-ND-A4WC-01 10 88719763 88719763 G A SNCG Missense_Mutation p.E57K 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-ND-A4WC-01 10 88761434 88761434 G A RP11-96C23.14 RNA 0.36 TCGA-ND-A4WC-01 10 88768826 88768826 G T RP11-96C23.10 3'Flank 0.34 TCGA-ND-A4WC-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-ND-A4WC-01 10 89711983 89711983 G T PTEN Nonsense_Mutation p.E201* 0.40 TCGA-ND-A4WC-01 10 89720871 89720871 T G PTEN Missense_Mutation p.F341C 0.31 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 10 89725286 89725286 A C PTEN 3'UTR 0.44 TCGA-ND-A4WC-01 10 90356596 90356598 TCA GTG LIPJ Missense_Mutation p.FI209CV 0.31 TCGA-ND-A4WC-01 10 90497470 90497470 C T LIPK Silent p.L250L 0.30 TCGA-ND-A4WC-01 10 90582657 90582657 C T ANKRD22 3'UTR 0.08 TCGA-ND-A4WC-01 10 90672714 90672714 C A STAMBPL1 Intron 0.39 TCGA-ND-A4WC-01 10 91065810 91065810 G T IFIT2 Missense_Mutation p.D33Y 0.33 tolerated(0.05) benign(0.141) TCGA-ND-A4WC-01 10 91162430 91162430 G A IFIT1 Missense_Mutation p.R133H 0.29 tolerated(0.21) benign(0.014) TCGA-ND-A4WC-01 10 91178049 91178049 C A IFIT5 Missense_Mutation p.L365I 0.10 deleterious(0.03) probably_damaging(0.924) TCGA-ND-A4WC-01 10 91468967 91468967 G A KIF20B Missense_Mutation p.R64Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-ND-A4WC-01 10 91470748 91470748 G A KIF20B Missense_Mutation p.R174Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 10 91478603 91478603 T C KIF20B Silent p.L470L 0.39 TCGA-ND-A4WC-01 10 91479274 91479274 A C KIF20B Missense_Mutation p.K511N 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-ND-A4WC-01 10 91488915 91488915 G T KIF20B Nonsense_Mutation p.E728* 0.26 TCGA-ND-A4WC-01 10 91528529 91528529 C A KIF20B Missense_Mutation p.S1669Y 0.41 tolerated(0.11) possibly_damaging(0.58) TCGA-ND-A4WC-01 10 93258717 93258717 G A HECTD2 Splice_Site p.X615_splice 0.38 TCGA-ND-A4WC-01 10 94369267 94369267 G T KIF11 Splice_Site p.X233_splice 0.31 TCGA-ND-A4WC-01 10 94397195 94397195 A G KIF11 Missense_Mutation p.N685D 0.39 tolerated(0.56) benign(0.004) TCGA-ND-A4WC-01 10 94816756 94816756 C T EXOC6 Missense_Mutation p.R749W 0.39 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 10 95262876 95262876 C T CEP55 Nonsense_Mutation p.R64* 0.43 TCGA-ND-A4WC-01 10 95263099 95263099 G A CEP55 Missense_Mutation p.R138Q 0.32 deleterious(0.01) benign(0.243) TCGA-ND-A4WC-01 10 95445014 95445014 A C FRA10AC1 Missense_Mutation p.L205R 0.21 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 10 95459799 95459799 T G FRA10AC1 Missense_Mutation p.K22T 0.45 tolerated(0.28) benign(0.091) TCGA-ND-A4WC-01 10 96030304 96030304 C A PLCE1 Nonsense_Mutation p.S1484* 0.34 TCGA-ND-A4WC-01 10 96073057 96073057 C T PLCE1 Missense_Mutation p.T2017M 0.31 tolerated(0.1) probably_damaging(0.964) TCGA-ND-A4WC-01 10 96354558 96354558 T G HELLS Missense_Mutation p.I732S 0.12 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 10 97443223 97443223 C T TCTN3 Intron 0.27 TCGA-ND-A4WC-01 10 97471699 97471699 C A ENTPD1 5'UTR 0.37 TCGA-ND-A4WC-01 10 97772424 97772424 A G CC2D2B Missense_Mutation p.K86E 0.29 deleterious(0.01) benign(0.228) TCGA-ND-A4WC-01 10 97772451 97772451 C T CC2D2B Silent p.L95L 0.28 TCGA-ND-A4WC-01 10 97779118 97779118 C A CC2D2B Intron 0.32 TCGA-ND-A4WC-01 10 97920080 97920080 C A ZNF518A RNA 0.41 TCGA-ND-A4WC-01 10 97920089 97920089 T G ZNF518A RNA 0.29 TCGA-ND-A4WC-01 10 98336396 98336396 A C TM9SF3 Missense_Mutation p.F98C 0.10 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 10 98825776 98825776 T G SLIT1 Missense_Mutation p.N161H 0.44 tolerated(0.07) probably_damaging(1) TCGA-ND-A4WC-01 10 99379234 99379234 A G MORN4 Intron 0.24 TCGA-ND-A4WC-01 10 99498292 99498292 G A ZFYVE27 Missense_Mutation p.E20K 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.837) TCGA-ND-A4WC-01 10 99968024 99968024 A G R3HCC1L Silent p.Q51Q 0.12 TCGA-ND-A4WC-01 11 100922293 100922293 C T PGR Missense_Mutation p.R740Q 0.38 deleterious(0.01) probably_damaging(0.952) TCGA-ND-A4WC-01 11 101362288 101362288 T G TRPC6 Missense_Mutation p.K376T 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-ND-A4WC-01 11 1016454 1016454 G T MUC6 Missense_Mutation p.S2116Y 0.40 possibly_damaging(0.608) TCGA-ND-A4WC-01 11 101833270 101833270 G T KIAA1377 Nonsense_Mutation p.E502* 0.50 TCGA-ND-A4WC-01 11 102269528 102269528 C A TMEM123 3'UTR 0.39 TCGA-ND-A4WC-01 11 102736613 102736613 T G MMP12 RNA 0.34 TCGA-ND-A4WC-01 11 102815028 102815028 G A MMP13 Silent p.R461R 0.10 TCGA-ND-A4WC-01 11 103027492 103027492 G A DYNC2H1 Missense_Mutation p.D1374N 0.34 benign(0.238) TCGA-ND-A4WC-01 11 103908701 103908701 T A DDI1 Missense_Mutation p.I384N 0.50 deleterious(0.04) benign(0.211) TCGA-ND-A4WC-01 11 10521689 10521689 C T AMPD3 Silent p.S547S 0.28 TCGA-ND-A4WC-01 11 105924041 105924041 G T KBTBD3 Missense_Mutation p.L459I 0.22 tolerated(0.47) possibly_damaging(0.777) TCGA-ND-A4WC-01 11 10653561 10653561 G A MRVI1 Missense_Mutation p.S126F 0.31 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 11 10785209 10785209 T C CTR9 Missense_Mutation p.F326S 0.32 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 11 10800738 10800738 C A CTR9 3'UTR 0.46 TCGA-ND-A4WC-01 11 108165729 108165729 C T ATM Nonsense_Mutation p.R1618* 0.33 TCGA-ND-A4WC-01 11 108235812 108235812 C A ATM Missense_Mutation p.L2952I 0.37 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 11 108380999 108380999 G T EXPH5 Missense_Mutation p.F1745L 0.32 tolerated(0.31) benign(0.356) TCGA-ND-A4WC-01 11 1088722 1088722 G T MUC2 Missense_Mutation p.K1169N 0.42 benign(0.039) TCGA-ND-A4WC-01 11 1095311 1095311 G A MUC2 Missense_Mutation p.G2044D 0.37 unknown(0) TCGA-ND-A4WC-01 11 110134819 110134819 T C RDX Silent p.L111L 0.45 TCGA-ND-A4WC-01 11 111338360 111338360 T G BTG4 3'UTR 0.33 TCGA-ND-A4WC-01 11 111583042 111583042 A G SIK2 Silent p.A403A 0.36 TCGA-ND-A4WC-01 11 111779674 111779674 G T CRYAB Silent p.I114I 0.26 TCGA-ND-A4WC-01 11 113102483 113102483 C A NCAM1 Silent p.G451G 0.09 TCGA-ND-A4WC-01 11 113102991 113102991 C A NCAM1 Nonsense_Mutation p.S496* 0.25 TCGA-ND-A4WC-01 11 113270689 113270689 G A ANKK1 Silent p.A666A 0.36 TCGA-ND-A4WC-01 11 113285165 113285165 C T DRD2 Missense_Mutation p.E248K 0.35 tolerated(0.16) benign(0.059) TCGA-ND-A4WC-01 11 113614583 113614583 C A ZW10 Missense_Mutation p.K484N 0.34 tolerated(0.13) benign(0.261) TCGA-ND-A4WC-01 11 113669851 113669851 G A USP28 3'UTR 0.48 TCGA-ND-A4WC-01 11 113723356 113723356 C A USP28 Splice_Site p.X46_splice 0.14 TCGA-ND-A4WC-01 11 113803116 113803116 G T HTR3B Missense_Mutation p.E158D 0.44 tolerated(0.52) possibly_damaging(0.771) TCGA-ND-A4WC-01 11 114393211 114393211 C A NXPE1 Missense_Mutation p.D233Y 0.28 deleterious(0.03) possibly_damaging(0.829) TCGA-ND-A4WC-01 11 116649650 116649650 C T ZNF259 Silent p.P457P 0.40 TCGA-ND-A4WC-01 11 117710691 117710691 T G FXYD6 Intron 0.35 TCGA-ND-A4WC-01 11 117785214 117785214 C T TMPRSS13 Missense_Mutation p.G191D 0.35 tolerated(0.06) benign(0.063) TCGA-ND-A4WC-01 11 118068800 118068800 C A AMICA1 Silent p.V306V 0.34 TCGA-ND-A4WC-01 11 118404598 118404598 T G TMEM25 Missense_Mutation p.S278A 0.08 tolerated(0.12) benign(0.066) TCGA-ND-A4WC-01 11 11970032 11970032 T G USP47 Missense_Mutation p.I1024S 0.26 deleterious(0) probably_damaging(0.958) TCGA-ND-A4WC-01 11 120139927 120139927 C T POU2F3 Nonsense_Mutation p.R38* 0.17 TCGA-ND-A4WC-01 11 120278467 120278467 G A ARHGEF12 Missense_Mutation p.R26Q 0.35 deleterious(0) possibly_damaging(0.895) TCGA-ND-A4WC-01 11 120690496 120690496 C T GRIK4 Silent p.F126F 0.32 TCGA-ND-A4WC-01 11 120852900 120852900 T G GRIK4 Missense_Mutation p.F827L 0.26 deleterious(0) possibly_damaging(0.473) TCGA-ND-A4WC-01 11 121008215 121008215 C T TECTA Silent p.C1009C 0.36 TCGA-ND-A4WC-01 11 121456952 121456952 G A SORL1 Missense_Mutation p.R1243H 0.34 tolerated(0.24) benign(0.003) TCGA-ND-A4WC-01 11 121986259 121986259 A C BLID 3'UTR 0.21 TCGA-ND-A4WC-01 11 122647912 122647912 C A UBASH3B Missense_Mutation p.F132L 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-ND-A4WC-01 11 123513189 123513189 G A SCN3B Missense_Mutation p.T137M 0.43 tolerated(0.08) benign(0.413) TCGA-ND-A4WC-01 11 123810531 123810531 G A OR4D5 Missense_Mutation p.D70N 0.35 deleterious(0) probably_damaging(0.989) TCGA-ND-A4WC-01 11 124253032 124253032 C A OR8B2 Missense_Mutation p.D70Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-ND-A4WC-01 11 124440834 124440834 C T OR8A1 Silent p.A290A 0.29 TCGA-ND-A4WC-01 11 124489663 124489663 C A PANX3 Silent p.I337I 0.29 TCGA-ND-A4WC-01 11 124748211 124748211 G A ROBO3 Missense_Mutation p.V1067M 0.39 tolerated(0.11) possibly_damaging(0.499) TCGA-ND-A4WC-01 11 124763776 124763776 G T ROBO4 Missense_Mutation p.A495D 0.40 tolerated(0.17) possibly_damaging(0.67) TCGA-ND-A4WC-01 11 124793762 124793762 G A HEPACAM Missense_Mutation p.S191L 0.40 deleterious(0.02) probably_damaging(0.979) TCGA-ND-A4WC-01 11 124824652 124824652 G T CCDC15 Missense_Mutation p.K8N 0.36 deleterious(0) probably_damaging(0.971) TCGA-ND-A4WC-01 11 124910539 124910539 A G CCDC15 Missense_Mutation p.N930D 0.39 deleterious(0.01) possibly_damaging(0.818) TCGA-ND-A4WC-01 11 125763958 125763958 T C PUS3 Missense_Mutation p.N390D 0.33 tolerated(0.64) benign(0.001) TCGA-ND-A4WC-01 11 126141541 126141541 C T FOXRED1 Missense_Mutation p.R99W 0.29 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 11 126279209 126279209 A C ST3GAL4 Missense_Mutation p.N225T 0.33 tolerated(0.05) benign(0.201) TCGA-ND-A4WC-01 11 1276394 1276394 C T MUC5B Missense_Mutation p.P5263L 0.32 unknown(0) TCGA-ND-A4WC-01 11 1279584 1279584 G A MUC5B Missense_Mutation p.G5527D 0.22 unknown(0) TCGA-ND-A4WC-01 11 128839659 128839659 G T ARHGAP32 Missense_Mutation p.L1803I 0.16 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 11 129246058 129246058 C T BARX2 Missense_Mutation p.S43F 0.23 deleterious(0.04) probably_damaging(0.959) TCGA-ND-A4WC-01 11 129784708 129784708 C T PRDM10 Missense_Mutation p.R915Q 0.36 tolerated(0.07) possibly_damaging(0.744) TCGA-ND-A4WC-01 11 133790722 133790722 A C IGSF9B Nonsense_Mutation p.Y966* 0.26 TCGA-ND-A4WC-01 11 134073715 134073715 C T NCAPD3 Silent p.E434E 0.17 TCGA-ND-A4WC-01 11 134127029 134127029 C T ACAD8 Silent p.F86F 0.28 TCGA-ND-A4WC-01 11 134147599 134147599 A C GLB1L3 Missense_Mutation p.N52T 0.31 deleterious(0) possibly_damaging(0.558) TCGA-ND-A4WC-01 11 134183838 134183838 T C GLB1L3 Missense_Mutation p.I528T 0.41 deleterious(0) possibly_damaging(0.564) TCGA-ND-A4WC-01 11 13733490 13733490 C A FAR1 Missense_Mutation p.L262I 0.23 tolerated(0.06) benign(0.219) TCGA-ND-A4WC-01 11 13736094 13736094 G A FAR1 Missense_Mutation p.E332K 0.18 tolerated(0.09) benign(0.001) TCGA-ND-A4WC-01 11 14480092 14480092 G A COPB1 Missense_Mutation p.R930C 0.39 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 11 1459617 1459617 T G BRSK2 Missense_Mutation p.Y136D 0.32 tolerated(0.15) possibly_damaging(0.84) TCGA-ND-A4WC-01 11 14666087 14666087 G T PDE3B Missense_Mutation p.A156S 0.32 tolerated(0.34) benign(0.106) TCGA-ND-A4WC-01 11 1618914 1618914 A G KRTAP5-2 3'UTR 0.38 TCGA-ND-A4WC-01 11 17141460 17141460 T C PIK3C2A Missense_Mutation p.N907D 0.35 tolerated(0.25) benign(0.012) TCGA-ND-A4WC-01 11 17428261 17428261 G A ABCC8 Silent p.L1079L 0.08 TCGA-ND-A4WC-01 11 17448598 17448598 G A ABCC8 Silent p.S740S 0.34 TCGA-ND-A4WC-01 11 1778571 1778571 G T CTSD Missense_Mutation p.F229L 0.30 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 11 18050721 18050721 A C TPH1 Missense_Mutation p.F220V 0.30 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 11 18057674 18057674 G A TPH1 Silent p.L45L 0.41 TCGA-ND-A4WC-01 11 18524068 18524068 G T TSG101 Missense_Mutation p.S202Y 0.38 tolerated(0.15) benign(0.054) TCGA-ND-A4WC-01 11 19185898 19185898 T C ZDHHC13 Silent p.C428C 0.28 TCGA-ND-A4WC-01 11 19247366 19247366 A G E2F8 Missense_Mutation p.S647P 0.33 tolerated(0.3) benign(0.004) TCGA-ND-A4WC-01 11 19251847 19251847 G A E2F8 Silent p.F433F 0.25 TCGA-ND-A4WC-01 11 20101616 20101616 G A NAV2 Missense_Mutation p.G1785D 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.69) TCGA-ND-A4WC-01 11 20124900 20124900 G T NAV2 Missense_Mutation p.V2232L 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-ND-A4WC-01 11 20486022 20486022 C G PRMT3 Missense_Mutation p.T426R 0.27 benign(0.019) TCGA-ND-A4WC-01 11 20940848 20940848 T C NELL1 Silent p.L243L 0.20 TCGA-ND-A4WC-01 11 209947 209947 C A RIC8A Missense_Mutation p.L225I 0.10 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 11 22833502 22833502 G T GAS2 Missense_Mutation p.M294I 0.36 tolerated(0.32) benign(0) TCGA-ND-A4WC-01 11 2324012 2324012 G A TSPAN32 Intron 0.25 TCGA-ND-A4WC-01 11 25004777 25004777 C T LUZP2 Missense_Mutation p.R235W 0.29 deleterious(0) benign(0.319) TCGA-ND-A4WC-01 11 26655846 26655846 G A ANO3 Missense_Mutation p.A657T 0.31 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 11 27360304 27360304 A C CCDC34 3'UTR 0.24 TCGA-ND-A4WC-01 11 27679308 27679308 T C BDNF 3'UTR 0.38 TCGA-ND-A4WC-01 11 27680092 27680092 G A BDNF Missense_Mutation p.T89I 0.34 deleterious(0) probably_damaging(0.934) TCGA-ND-A4WC-01 11 27695654 27695654 C T BDNF Missense_Mutation p.V60I 0.37 tolerated_low_confidence(0.45) benign(0) TCGA-ND-A4WC-01 11 32637489 32637489 C T CCDC73 Missense_Mutation p.D458N 0.24 deleterious(0.04) benign(0.007) TCGA-ND-A4WC-01 11 33054270 33054270 A C DEPDC7 Missense_Mutation p.K398N 0.37 deleterious(0) probably_damaging(0.969) TCGA-ND-A4WC-01 11 33083232 33083232 A C TCP11L1 Missense_Mutation p.K311T 0.19 tolerated(0.07) benign(0.133) TCGA-ND-A4WC-01 11 33127373 33127373 A C CSTF3 Intron 0.31 TCGA-ND-A4WC-01 11 33763477 33763477 G A FBXO3 Missense_Mutation p.R465C 0.26 tolerated_low_confidence(0.1) unknown(0) TCGA-ND-A4WC-01 11 34093499 34093499 G T CAPRIN1 Nonsense_Mutation p.E111* 0.54 TCGA-ND-A4WC-01 11 3423022 3423022 C A TSSC2 RNA 0.29 TCGA-ND-A4WC-01 11 35308373 35308373 G A SLC1A2 Missense_Mutation p.A406V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 11 35461197 35461197 G A PAMR1 Missense_Mutation p.L377F 0.32 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 11 36511925 36511925 G A TRAF6 Silent p.I344I 0.27 TCGA-ND-A4WC-01 11 36597386 36597386 G T RAG1 Missense_Mutation p.M844I 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.785) TCGA-ND-A4WC-01 11 3781836 3781836 C T NUP98 Silent p.K369K 0.25 TCGA-ND-A4WC-01 11 3849145 3849145 G T RHOG Missense_Mutation p.T75N 0.25 deleterious(0) probably_damaging(0.959) TCGA-ND-A4WC-01 11 43852434 43852434 T G HSD17B12 Intron 0.29 TCGA-ND-A4WC-01 11 44931436 44931436 T C TSPAN18 Missense_Mutation p.C82R 0.37 tolerated(0.2) probably_damaging(0.99) TCGA-ND-A4WC-01 11 45882464 45882464 G A CRY2 Missense_Mutation p.R199H 0.34 tolerated(0.06) possibly_damaging(0.806) TCGA-ND-A4WC-01 11 4623410 4623410 G A TRIM68 Missense_Mutation p.S252L 0.38 tolerated(0.08) benign(0.356) TCGA-ND-A4WC-01 11 4673754 4673754 T C OR51E1 5'UTR 0.12 TCGA-ND-A4WC-01 11 46799031 46799031 T G CKAP5 Missense_Mutation p.K940N 0.38 deleterious(0.01) probably_damaging(0.955) TCGA-ND-A4WC-01 11 46921846 46921846 C T LRP4 Missense_Mutation p.D95N 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 11 4703813 4703813 G T OR51E2 Silent p.I43I 0.34 TCGA-ND-A4WC-01 11 47297547 47297547 C T MADD Nonsense_Mutation p.R253* 0.43 TCGA-ND-A4WC-01 11 47364690 47364690 G T MYBPC3 Silent p.I411I 0.31 TCGA-ND-A4WC-01 11 47767735 47767735 T A FNBP4 Missense_Mutation p.E373V 0.31 tolerated(0.1) possibly_damaging(0.634) TCGA-ND-A4WC-01 11 48510546 48510546 G T OR4A47 Missense_Mutation p.D68Y 0.38 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-ND-A4WC-01 11 4869969 4869969 G T OR51S1 Missense_Mutation p.S157Y 0.36 deleterious(0.03) benign(0.009) TCGA-ND-A4WC-01 11 49168255 49168255 C A FOLH1 3'UTR 0.15 TCGA-ND-A4WC-01 11 4945040 4945040 G A OR51G1 Missense_Mutation p.A177V 0.27 deleterious(0) benign(0.326) TCGA-ND-A4WC-01 11 5013298 5013298 G A MMP26 Missense_Mutation p.D234N 0.41 tolerated(1) benign(0.003) TCGA-ND-A4WC-01 11 5153355 5153355 C T OR52A5 Missense_Mutation p.R173Q 0.31 tolerated(0.17) benign(0.025) TCGA-ND-A4WC-01 11 5254275 5254275 C A HBD Missense_Mutation p.K121N 0.35 tolerated(0.06) benign(0.003) TCGA-ND-A4WC-01 11 5269669 5269669 C A HBG1 Nonsense_Mutation p.E122* 0.46 TCGA-ND-A4WC-01 11 55111641 55111641 C A OR4A16 Missense_Mutation p.S322Y 0.32 tolerated_low_confidence(0.24) benign(0.198) TCGA-ND-A4WC-01 11 55339799 55339799 T G OR4C16 Missense_Mutation p.L66V 0.09 deleterious(0.03) benign(0.176) TCGA-ND-A4WC-01 11 55433247 55433247 G A OR4C6 Missense_Mutation p.G202E 0.37 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-ND-A4WC-01 11 55541030 55541030 C T OR5D13 Silent p.V39V 0.35 TCGA-ND-A4WC-01 11 55563549 55563549 C A OR5D14 Missense_Mutation p.P173H 0.32 tolerated(0.55) benign(0.009) TCGA-ND-A4WC-01 11 55563587 55563587 C T OR5D14 Missense_Mutation p.L186F 0.39 deleterious(0) probably_damaging(0.913) TCGA-ND-A4WC-01 11 55587551 55587551 C A OR5D18 Missense_Mutation p.S149Y 0.34 deleterious(0) possibly_damaging(0.897) TCGA-ND-A4WC-01 11 55681139 55681139 T G OR5W2 Missense_Mutation p.K307T 0.30 deleterious(0.02) benign(0.135) TCGA-ND-A4WC-01 11 55735436 55735436 G T OR10AG1 Missense_Mutation p.F168L 0.25 deleterious(0.02) benign(0.375) TCGA-ND-A4WC-01 11 55735728 55735728 C A OR10AG1 Missense_Mutation p.R71I 0.31 deleterious(0) probably_damaging(0.939) TCGA-ND-A4WC-01 11 55761503 55761503 G T OR5F1 Missense_Mutation p.S200Y 0.31 tolerated(0.08) benign(0.208) TCGA-ND-A4WC-01 11 55861062 55861062 C A OR8I2 Silent p.S93S 0.44 TCGA-ND-A4WC-01 11 55926970 55926970 G T OR8K5 Missense_Mutation p.S275Y 0.37 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-ND-A4WC-01 11 56020105 56020105 C T OR5T3 Missense_Mutation p.L144F 0.33 deleterious(0) probably_damaging(0.972) TCGA-ND-A4WC-01 11 56020296 56020296 C A OR5T3 Silent p.V207V 0.36 TCGA-ND-A4WC-01 11 56043431 56043431 T G OR5T1 Missense_Mutation p.F106C 0.51 deleterious(0.01) benign(0.165) TCGA-ND-A4WC-01 11 56185045 56185045 T C OR5R1 Missense_Mutation p.I222V 0.41 tolerated(0.33) benign(0.02) TCGA-ND-A4WC-01 11 56258050 56258050 G T OR5M8 Missense_Mutation p.S266Y 0.14 deleterious(0) probably_damaging(0.986) TCGA-ND-A4WC-01 11 56409495 56409495 G A OR5AP2 Missense_Mutation p.L141F 0.29 tolerated(0.16) benign(0.382) TCGA-ND-A4WC-01 11 5664849 5664849 C A TRIM34 Missense_Mutation p.F459L 0.26 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 11 56949434 56949434 C A LRRC55 Missense_Mutation p.L23I 0.38 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-ND-A4WC-01 11 5699533 5699533 C T TRIM5 Silent p.T215T 0.14 TCGA-ND-A4WC-01 11 57003380 57003380 C T APLNR Missense_Mutation p.E367K 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.644) TCGA-ND-A4WC-01 11 57077055 57077055 C A TNKS1BP1 Missense_Mutation p.D1044Y 0.38 deleterious(0) probably_damaging(0.961) TCGA-ND-A4WC-01 11 57505465 57505465 C T TMX2 Missense_Mutation p.R111C 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 11 57506209 57506209 C A TMX2 Nonsense_Mutation p.S172* 0.32 TCGA-ND-A4WC-01 11 57573508 57573508 G A CTNND1 Splice_Site p.X626_splice 0.31 TCGA-ND-A4WC-01 11 57971122 57971122 G T OR1S2 Missense_Mutation p.Q178K 0.09 tolerated(0.05) benign(0.213) TCGA-ND-A4WC-01 11 57971527 57971527 G T OR1S2 Missense_Mutation p.L43I 0.35 tolerated(0.12) benign(0.038) TCGA-ND-A4WC-01 11 57982521 57982521 G A OR1S1 Missense_Mutation p.S102N 0.38 tolerated(0.22) benign(0.018) TCGA-ND-A4WC-01 11 57982748 57982748 C A OR1S1 Missense_Mutation p.Q178K 0.29 tolerated(0.05) benign(0.152) TCGA-ND-A4WC-01 11 5798916 5798916 A C OR52N5 Missense_Mutation p.F317V 0.13 deleterious(0.01) benign(0.014) TCGA-ND-A4WC-01 11 5809140 5809140 G A OR52N1 Nonsense_Mutation p.R303* 0.38 TCGA-ND-A4WC-01 11 58170438 58170438 A C OR5B3 Missense_Mutation p.C149G 0.36 tolerated_low_confidence(0.2) benign(0.02) TCGA-ND-A4WC-01 11 58170849 58170849 G T OR5B3 Missense_Mutation p.L12I 0.20 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-ND-A4WC-01 11 58384868 58384868 G A ZFP91 Missense_Mutation p.A468T 0.43 deleterious(0.01) possibly_damaging(0.878) TCGA-ND-A4WC-01 11 58478199 58478199 G A GLYAT Missense_Mutation p.L118F 0.36 deleterious(0.02) benign(0.443) TCGA-ND-A4WC-01 11 5862509 5862509 G T OR52E6 Missense_Mutation p.L207I 0.31 tolerated(0.7) benign(0.032) TCGA-ND-A4WC-01 11 58949740 58949740 G A DTX4 Missense_Mutation p.R247Q 0.31 tolerated(0.3) benign(0.008) TCGA-ND-A4WC-01 11 59421459 59421459 C A PATL1 Missense_Mutation p.R373I 0.42 tolerated(0.07) possibly_damaging(0.543) TCGA-ND-A4WC-01 11 59480843 59480843 G T OR10V1 Missense_Mutation p.P159Q 0.09 tolerated(1) benign(0.057) TCGA-ND-A4WC-01 11 59620703 59620703 G A TCN1 Silent p.L405L 0.35 TCGA-ND-A4WC-01 11 59811081 59811081 G A OOSP2 Silent p.E68E 0.18 TCGA-ND-A4WC-01 11 6023301 6023301 T G OR56A4 Missense_Mutation p.N360H 0.33 tolerated(0.06) possibly_damaging(0.712) TCGA-ND-A4WC-01 11 60268548 60268548 A G MS4A12 Missense_Mutation p.I103V 0.27 deleterious(0.05) benign(0.254) TCGA-ND-A4WC-01 11 60531322 60531322 T G MS4A15 Missense_Mutation p.I39S 0.35 tolerated(0.11) benign(0.034) TCGA-ND-A4WC-01 11 60635066 60635066 A G ZP1 Missense_Mutation p.Y11C 0.28 tolerated_low_confidence(0.18) benign(0) TCGA-ND-A4WC-01 11 60704617 60704617 G A SLC15A3 3'UTR 0.28 TCGA-ND-A4WC-01 11 61026361 61026361 G T VWCE Missense_Mutation p.S885Y 0.43 deleterious_low_confidence(0) benign(0.165) TCGA-ND-A4WC-01 11 61081881 61081881 C A DDB1 Missense_Mutation p.K496N 0.06 tolerated(0.5) benign(0.418) TCGA-ND-A4WC-01 11 61135211 61135211 G T TMEM138 Intron 0.50 TCGA-ND-A4WC-01 11 62288113 62288113 C A AHNAK Missense_Mutation p.K4592N 0.40 possibly_damaging(0.71) TCGA-ND-A4WC-01 11 62290081 62290081 T C AHNAK Silent p.K3936K 0.39 TCGA-ND-A4WC-01 11 62290790 62290790 A C AHNAK Missense_Mutation p.L3700R 0.36 possibly_damaging(0.789) TCGA-ND-A4WC-01 11 62364120 62364120 G A MTA2 Missense_Mutation p.R291C 0.35 deleterious(0.01) possibly_damaging(0.719) TCGA-ND-A4WC-01 11 62374545 62374545 A C EML3 Silent p.P463P 0.30 TCGA-ND-A4WC-01 11 6244441 6244441 A G FAM160A2 Missense_Mutation p.Y269H 0.10 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 11 62534032 62534032 T G POLR2G 3'UTR 0.16 TCGA-ND-A4WC-01 11 62621205 62621205 A G SLC3A2 5'Flank 0.20 TCGA-ND-A4WC-01 11 62996981 62996981 G A SLC22A25 Silent p.R48R 0.44 TCGA-ND-A4WC-01 11 63342391 63342391 A G PLA2G16 3'UTR 0.42 TCGA-ND-A4WC-01 11 63974831 63974831 G A FERMT3 5'UTR 0.39 TCGA-ND-A4WC-01 11 64374680 64374680 C A NRXN2 Missense_Mutation p.E1709D 0.30 deleterious(0) possibly_damaging(0.636) TCGA-ND-A4WC-01 11 64527344 64527344 C A PYGM Missense_Mutation p.E9D 0.31 tolerated(0.51) benign(0.003) TCGA-ND-A4WC-01 11 64876790 64876790 C T VPS51 Silent p.I494I 0.38 TCGA-ND-A4WC-01 11 65116351 65116351 C T DPF2 Missense_Mutation p.R350C 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 11 65265596 65265596 A C MALAT1 RNA 0.40 TCGA-ND-A4WC-01 11 65268580 65268580 G T MALAT1 RNA 0.27 TCGA-ND-A4WC-01 11 66239872 66239872 G A PELI3 Silent p.S129S 0.31 TCGA-ND-A4WC-01 11 66259175 66259175 C T DPP3 Silent p.I312I 0.33 TCGA-ND-A4WC-01 11 66319048 66319048 C A ACTN3 3'UTR 0.43 TCGA-ND-A4WC-01 11 67049829 67049829 G A ADRBK1 Missense_Mutation p.A349T 0.41 deleterious(0) possibly_damaging(0.869) TCGA-ND-A4WC-01 11 67219701 67219701 G A GPR152 Silent p.P165P 0.12 TCGA-ND-A4WC-01 11 67400485 67400485 C T TBX10 Silent p.E213E 0.37 TCGA-ND-A4WC-01 11 67926511 67926511 A C SUV420H1 Missense_Mutation p.N434K 0.34 deleterious(0) benign(0.24) TCGA-ND-A4WC-01 11 68171142 68171142 A C LRP5 Missense_Mutation p.K592N 0.09 deleterious(0) possibly_damaging(0.739) TCGA-ND-A4WC-01 11 68369357 68369357 C A PPP6R3 Missense_Mutation p.S740Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 11 68696697 68696697 C T IGHMBP2 Silent p.F369F 0.38 TCGA-ND-A4WC-01 11 691572 691572 C T DEAF1 Missense_Mutation p.V106M 0.34 tolerated(0.08) benign(0.004) TCGA-ND-A4WC-01 11 6943085 6943085 G T OR2D3 Nonsense_Mutation p.E285* 0.41 TCGA-ND-A4WC-01 11 69486487 69486487 G A ORAOV1 Intron 0.34 TCGA-ND-A4WC-01 11 69951871 69951871 G A ANO1 Missense_Mutation p.D242N 0.40 tolerated(0.14) probably_damaging(0.973) TCGA-ND-A4WC-01 11 70170513 70170513 C T PPFIA1 Silent p.F90F 0.39 TCGA-ND-A4WC-01 11 70171616 70171616 G A PPFIA1 Missense_Mutation p.R181Q 0.30 deleterious(0.04) benign(0.187) TCGA-ND-A4WC-01 11 7060094 7060094 G T NLRP14 Nonsense_Mutation p.E93* 0.12 TCGA-ND-A4WC-01 11 7063935 7063935 G T NLRP14 Missense_Mutation p.E226D 0.32 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 11 71174492 71174492 G A NADSYN1 Missense_Mutation p.R93Q 0.15 tolerated(0.07) benign(0.206) TCGA-ND-A4WC-01 11 71728710 71728710 C T NUMA1 Intron 0.25 TCGA-ND-A4WC-01 11 71821542 71821542 C T LRTOMT 3'UTR 0.55 TCGA-ND-A4WC-01 11 72289284 72289284 T G PDE2A Missense_Mutation p.I870L 0.26 tolerated(0.4) benign(0.075) TCGA-ND-A4WC-01 11 72418358 72418358 C T ARAP1 Missense_Mutation p.A529T 0.40 deleterious(0.04) possibly_damaging(0.481) TCGA-ND-A4WC-01 11 72537800 72537800 C T ATG16L2 Missense_Mutation p.T433M 0.37 deleterious(0.01) probably_damaging(0.931) TCGA-ND-A4WC-01 11 73717235 73717235 A G UCP3 Missense_Mutation p.Y106H 0.15 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 11 74421962 74421962 C A CHRDL2 Nonsense_Mutation p.E122* 0.36 TCGA-ND-A4WC-01 11 74880412 74880412 G A SLCO2B1 Missense_Mutation p.D215N 0.30 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 11 7531307 7531307 G T OLFML1 Missense_Mutation p.R366I 0.35 tolerated(0.11) possibly_damaging(0.88) TCGA-ND-A4WC-01 11 75439940 75439940 G T MOGAT2 Missense_Mutation p.K252N 0.37 deleterious(0.02) benign(0.033) TCGA-ND-A4WC-01 11 7663587 7663587 C T PPFIBP2 Nonsense_Mutation p.R526* 0.34 TCGA-ND-A4WC-01 11 76910822 76910822 G T MYO7A Missense_Mutation p.R1604I 0.21 deleterious(0) possibly_damaging(0.898) TCGA-ND-A4WC-01 11 76990353 76990353 A G GDPD4 Silent p.L49L 0.37 TCGA-ND-A4WC-01 11 77336824 77336824 T C CLNS1A Missense_Mutation p.D101G 0.15 tolerated(0.08) benign(0.292) TCGA-ND-A4WC-01 11 77612494 77612494 A C INTS4 Missense_Mutation p.L734R 0.20 deleterious(0) possibly_damaging(0.83) TCGA-ND-A4WC-01 11 77692505 77692505 T G INTS4 Missense_Mutation p.K122Q 0.43 tolerated(0.16) benign(0.1) TCGA-ND-A4WC-01 11 7817521 7817521 C A OR5P2 Nonstop_Mutation p.*323Yext*? 0.33 TCGA-ND-A4WC-01 11 78383338 78383338 G A TENM4 Missense_Mutation p.R1845C 0.18 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 11 7982477 7982477 C T NLRP10 Missense_Mutation p.G228R 0.31 tolerated(0.08) benign(0.287) TCGA-ND-A4WC-01 11 7982699 7982699 C T NLRP10 Missense_Mutation p.A154T 0.32 tolerated(0.77) benign(0.004) TCGA-ND-A4WC-01 11 7982859 7982859 T G NLRP10 Missense_Mutation p.E100D 0.30 tolerated(0.17) benign(0.008) TCGA-ND-A4WC-01 11 8013686 8013686 C A EIF3F Missense_Mutation p.S164Y 0.33 deleterious(0.01) benign(0.098) TCGA-ND-A4WC-01 11 82564263 82564263 G A PRCP Nonsense_Mutation p.R144* 0.22 TCGA-ND-A4WC-01 11 82698747 82698747 G A RAB30 Silent p.S81S 0.12 TCGA-ND-A4WC-01 11 82872456 82872456 A G PCF11 Missense_Mutation p.K94E 0.25 deleterious(0) possibly_damaging(0.806) TCGA-ND-A4WC-01 11 82878235 82878235 A C PCF11 Missense_Mutation p.K629T 0.38 tolerated(0.07) probably_damaging(0.918) TCGA-ND-A4WC-01 11 82909623 82909623 A C ANKRD42 Intron 0.23 TCGA-ND-A4WC-01 11 84245767 84245767 C T DLG2 Missense_Mutation p.R122Q 0.35 deleterious_low_confidence(0.04) probably_damaging(0.964) TCGA-ND-A4WC-01 11 85396557 85396557 G A CCDC89 Missense_Mutation p.A206V 0.27 tolerated(0.14) possibly_damaging(0.672) TCGA-ND-A4WC-01 11 85396938 85396938 A C CCDC89 Missense_Mutation p.I79S 0.08 deleterious(0) possibly_damaging(0.886) TCGA-ND-A4WC-01 11 85407247 85407247 G T SYTL2 Missense_Mutation p.L1218I 0.35 tolerated(0.09) probably_damaging(0.91) TCGA-ND-A4WC-01 11 87847193 87847193 G A RAB38 Missense_Mutation p.T200I 0.37 tolerated(0.18) benign(0.024) TCGA-ND-A4WC-01 11 89868834 89868834 C A NAALAD2 Missense_Mutation p.L64I 0.43 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 11 89944398 89944398 C A CHORDC1 Nonsense_Mutation p.E140* 0.33 TCGA-ND-A4WC-01 11 9069544 9069544 C T SCUBE2 Missense_Mutation p.E581K 0.35 deleterious(0.04) possibly_damaging(0.492) TCGA-ND-A4WC-01 11 92085936 92085936 A C FAT3 Missense_Mutation p.N220H 0.34 possibly_damaging(0.525) TCGA-ND-A4WC-01 11 92087781 92087781 A C FAT3 Missense_Mutation p.S835R 0.54 benign(0.439) TCGA-ND-A4WC-01 11 92498214 92498214 C A FAT3 Missense_Mutation p.S1385Y 0.32 probably_damaging(0.961) TCGA-ND-A4WC-01 11 92532534 92532534 G T FAT3 Missense_Mutation p.V2119L 0.30 probably_damaging(0.999) TCGA-ND-A4WC-01 11 92901248 92901248 C T SLC36A4 Silent p.R210R 0.33 TCGA-ND-A4WC-01 11 93104221 93104221 C G CCDC67 Nonsense_Mutation p.Y188* 0.45 TCGA-ND-A4WC-01 11 93487178 93487178 T G C11orf54 Missense_Mutation p.F102C 0.07 tolerated(0.18) benign(0.007) TCGA-ND-A4WC-01 11 93796740 93796740 A G HEPHL1 Missense_Mutation p.N161S 0.31 tolerated(0.89) benign(0.264) TCGA-ND-A4WC-01 11 94178996 94178996 C A MRE11A Missense_Mutation p.R616I 0.37 deleterious_low_confidence(0.01) benign(0.177) TCGA-ND-A4WC-01 11 94224044 94224044 C T MRE11A Silent p.T36T 0.27 TCGA-ND-A4WC-01 11 94229989 94229989 C A ANKRD49 Missense_Mutation p.L44I 0.10 tolerated(0.05) benign(0.057) TCGA-ND-A4WC-01 11 94310616 94310616 C T PIWIL4 Silent p.F157F 0.41 TCGA-ND-A4WC-01 11 94318621 94318621 A C PIWIL4 Missense_Mutation p.K216Q 0.30 tolerated(0.67) benign(0.071) TCGA-ND-A4WC-01 11 94322371 94322371 G T PIWIL4 Missense_Mutation p.E333D 0.30 tolerated(0.13) benign(0.011) TCGA-ND-A4WC-01 11 94732052 94732052 C T KDM4D Missense_Mutation p.P506S 0.45 tolerated_low_confidence(0.13) benign(0.062) TCGA-ND-A4WC-01 11 95578263 95578263 C T MTMR2 Missense_Mutation p.V414I 0.42 tolerated(0.08) benign(0.11) TCGA-ND-A4WC-01 11 95826576 95826576 G A MAML2 Missense_Mutation p.R207C 0.31 benign(0.103) TCGA-ND-A4WC-01 11 9598080 9598080 A C WEE1 Missense_Mutation p.E298A 0.10 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 11 96123832 96123832 C T JRKL Missense_Mutation p.R7C 0.29 deleterious(0.02) probably_damaging(0.971) TCGA-ND-A4WC-01 11 9829665 9829665 A G SBF2 Missense_Mutation p.V1442A 0.28 deleterious(0) possibly_damaging(0.5) TCGA-ND-A4WC-01 11 99827539 99827539 G T CNTN5 Missense_Mutation p.E225D 0.16 tolerated(0.29) possibly_damaging(0.64) TCGA-ND-A4WC-01 12 100169404 100169404 C T ANKS1B Missense_Mutation p.E295K 0.52 tolerated(0.23) benign(0.032) TCGA-ND-A4WC-01 12 100441926 100441926 G T UHRF1BP1L Missense_Mutation p.S1256Y 0.28 tolerated(0.05) benign(0.206) TCGA-ND-A4WC-01 12 100453042 100453042 A C UHRF1BP1L Missense_Mutation p.I671M 0.39 deleterious(0.03) possibly_damaging(0.474) TCGA-ND-A4WC-01 12 100453047 100453047 C A UHRF1BP1L Nonsense_Mutation p.E670* 0.37 TCGA-ND-A4WC-01 12 100551073 100551073 A G AC010203.1 RNA 0.36 TCGA-ND-A4WC-01 12 100727960 100727960 C T SCYL2 Missense_Mutation p.S593F 0.37 deleterious(0.01) benign(0.097) TCGA-ND-A4WC-01 12 100928670 100928670 T G NR1H4 Missense_Mutation p.L211V 0.27 deleterious(0) benign(0.266) TCGA-ND-A4WC-01 12 100934521 100934521 C T NR1H4 Missense_Mutation p.R345C 0.43 deleterious(0.04) probably_damaging(1) TCGA-ND-A4WC-01 12 10124262 10124262 G T CLEC12A Nonsense_Mutation p.E33* 0.37 TCGA-ND-A4WC-01 12 101413875 101413875 C A ANO4 Missense_Mutation p.H231Q 0.35 tolerated(0.06) probably_damaging(0.999) TCGA-ND-A4WC-01 12 101679554 101679554 A C UTP20 Missense_Mutation p.K74T 0.28 deleterious(0.02) probably_damaging(0.917) TCGA-ND-A4WC-01 12 101693498 101693498 G T UTP20 Missense_Mutation p.R490I 0.23 tolerated(0.13) benign(0.001) TCGA-ND-A4WC-01 12 101873373 101873373 C A SPIC Nonsense_Mutation p.Y37* 0.37 TCGA-ND-A4WC-01 12 102038555 102038555 G T MYBPC1 Nonsense_Mutation p.E291* 0.36 TCGA-ND-A4WC-01 12 102067366 102067366 C T MYBPC1 Silent p.F918F 0.33 TCGA-ND-A4WC-01 12 102122937 102122937 C A SYCP3 Nonsense_Mutation p.E203* 0.25 TCGA-ND-A4WC-01 12 102153891 102153891 T G GNPTAB Missense_Mutation p.N1056H 0.29 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 12 10332194 10332194 C T TMEM52B Missense_Mutation p.S2L 0.29 deleterious_low_confidence(0) benign(0.001) TCGA-ND-A4WC-01 12 103700009 103700009 T G C12orf42 Missense_Mutation p.E125A 0.14 tolerated(0.9) benign(0.058) TCGA-ND-A4WC-01 12 104122665 104122665 T A STAB2 Silent p.V1658V 0.08 TCGA-ND-A4WC-01 12 104335423 104335423 T C HSP90B1 Missense_Mutation p.V416A 0.31 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 12 104336433 104336433 G A HSP90B1 Silent p.S501S 0.30 TCGA-ND-A4WC-01 12 104373823 104373823 T A TDG Silent p.I127I 0.30 TCGA-ND-A4WC-01 12 104492166 104492166 C T HCFC2 Nonsense_Mutation p.R596* 0.39 TCGA-ND-A4WC-01 12 104497111 104497111 G T HCFC2 3'UTR 0.31 TCGA-ND-A4WC-01 12 105151374 105151374 G T CHST11 Missense_Mutation p.E284D 0.41 tolerated(0.12) benign(0.015) TCGA-ND-A4WC-01 12 105527584 105527584 G A KIAA1033 Nonsense_Mutation p.W412* 0.29 TCGA-ND-A4WC-01 12 105535003 105535003 T G KIAA1033 Missense_Mutation p.L589R 0.35 tolerated(0.15) benign(0.014) TCGA-ND-A4WC-01 12 10569349 10569349 A C KLRC3 Missense_Mutation p.I168M 0.13 deleterious(0.01) possibly_damaging(0.447) TCGA-ND-A4WC-01 12 106633909 106633909 C A CKAP4 Missense_Mutation p.E234D 0.37 deleterious(0.01) probably_damaging(0.974) TCGA-ND-A4WC-01 12 107075883 107075883 G A RFX4 Intron 0.27 TCGA-ND-A4WC-01 12 108004065 108004065 G A BTBD11 Missense_Mutation p.R581Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 12 108010898 108010898 C T BTBD11 Silent p.G678G 0.37 TCGA-ND-A4WC-01 12 108145727 108145727 A C PRDM4 Silent p.V197V 0.41 TCGA-ND-A4WC-01 12 108626509 108626509 C T WSCD2 Silent p.D327D 0.44 TCGA-ND-A4WC-01 12 108685654 108685654 C A CMKLR1 Missense_Mutation p.R362S 0.25 tolerated(0.19) benign(0.009) TCGA-ND-A4WC-01 12 108931363 108931363 C T SART3 Missense_Mutation p.E404K 0.40 deleterious(0.01) probably_damaging(0.93) TCGA-ND-A4WC-01 12 108957880 108957880 T C ISCU Intron 0.40 TCGA-ND-A4WC-01 12 109294343 109294343 G T DAO 3'UTR 0.16 TCGA-ND-A4WC-01 12 10959316 10959316 G A TAS2R8 Silent p.F88F 0.46 TCGA-ND-A4WC-01 12 10962679 10962679 G T TAS2R9 5'UTR 0.25 TCGA-ND-A4WC-01 12 109863801 109863801 C A MYO1H Silent p.I576I 0.35 TCGA-ND-A4WC-01 12 109994855 109994855 G A MMAB Missense_Mutation p.S244L 0.43 tolerated_low_confidence(0.13) benign(0.013) TCGA-ND-A4WC-01 12 110451051 110451051 C T ANKRD13A Silent p.L117L 0.31 TCGA-ND-A4WC-01 12 110618313 110618313 C T IFT81 Silent p.F425F 0.18 TCGA-ND-A4WC-01 12 110902914 110902914 C A GPN3 Missense_Mutation p.A91S 0.34 tolerated(0.37) benign(0.288) TCGA-ND-A4WC-01 12 111348774 111348774 A G MYL2 3'UTR 0.50 TCGA-ND-A4WC-01 12 11139431 11139431 G T TAS2R50 Nonsense_Mutation p.S10* 0.27 TCGA-ND-A4WC-01 12 11150374 11150374 G A TAS2R20 Missense_Mutation p.A34V 0.33 deleterious(0) benign(0.425) TCGA-ND-A4WC-01 12 111776197 111776197 C T CUX2 Missense_Mutation p.P1102S 0.33 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 12 112673048 112673048 T C HECTD4 Silent p.P1770P 0.39 TCGA-ND-A4WC-01 12 112893786 112893786 A C PTPN11 Missense_Mutation p.E225D 0.41 tolerated(0.87) benign(0.118) TCGA-ND-A4WC-01 12 113436156 113436156 A G OAS2 Missense_Mutation p.T317A 0.31 tolerated(1) benign(0.01) TCGA-ND-A4WC-01 12 113599158 113599158 A C DDX54 Missense_Mutation p.I777S 0.45 deleterious(0) possibly_damaging(0.586) TCGA-ND-A4WC-01 12 114364909 114364909 G A RBM19 Silent p.L732L 0.37 TCGA-ND-A4WC-01 12 114803995 114803995 T G TBX5 Missense_Mutation p.Q319H 0.09 tolerated(0.13) possibly_damaging(0.646) TCGA-ND-A4WC-01 12 114832641 114832641 C A TBX5 Nonsense_Mutation p.E190* 0.36 TCGA-ND-A4WC-01 12 11508421 11508421 T C PRB1 Intron 0.39 TCGA-ND-A4WC-01 12 116408498 116408498 C A MED13L Missense_Mutation p.D1990Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 12 116446641 116446641 T G MED13L Missense_Mutation p.D526A 0.46 tolerated(0.2) unknown(0) TCGA-ND-A4WC-01 12 116534522 116534522 T C MED13L Missense_Mutation p.K144R 0.50 deleterious(0.04) unknown(0) TCGA-ND-A4WC-01 12 116586367 116586367 C T MED13L Intron 0.36 TCGA-ND-A4WC-01 12 118467596 118467596 C T RFC5 Nonsense_Mutation p.R298* 0.40 TCGA-ND-A4WC-01 12 118474182 118474182 A C WSB2 Missense_Mutation p.M265R 0.31 deleterious(0.01) possibly_damaging(0.69) TCGA-ND-A4WC-01 12 118675943 118675943 G A TAOK3 Silent p.I124I 0.29 TCGA-ND-A4WC-01 12 119583269 119583269 C T SRRM4 Silent p.Y285Y 0.48 TCGA-ND-A4WC-01 12 119588844 119588844 G A SRRM4 Missense_Mutation p.E367K 0.36 tolerated_low_confidence(0.1) probably_damaging(0.953) TCGA-ND-A4WC-01 12 120295449 120295449 C T CIT Missense_Mutation p.E98K 0.30 deleterious(0) benign(0.311) TCGA-ND-A4WC-01 12 12038927 12038927 T C ETV6 Missense_Mutation p.I407T 0.27 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 120762808 120762808 T G PLA2G1B Missense_Mutation p.K84T 0.42 tolerated(0.55) benign(0.004) TCGA-ND-A4WC-01 12 121151136 121151136 C T UNC119B Nonsense_Mutation p.R102* 0.24 TCGA-ND-A4WC-01 12 122361794 122361794 C T WDR66 Silent p.S215S 0.43 TCGA-ND-A4WC-01 12 123067340 123067340 A G KNTC1 Missense_Mutation p.E1024G 0.39 deleterious(0) possibly_damaging(0.868) TCGA-ND-A4WC-01 12 123087284 123087284 C A KNTC1 Missense_Mutation p.L1608I 0.28 tolerated(1) benign(0.031) TCGA-ND-A4WC-01 12 12317334 12317334 A C LRP6 Missense_Mutation p.I642S 0.32 deleterious(0) possibly_damaging(0.848) TCGA-ND-A4WC-01 12 123900207 123900207 C A RILPL2 3'UTR 0.26 TCGA-ND-A4WC-01 12 124102387 124102387 T C DDX55 Missense_Mutation p.S378P 0.10 tolerated(0.06) benign(0.02) TCGA-ND-A4WC-01 12 124104541 124104541 G T DDX55 Nonsense_Mutation p.E553* 0.37 TCGA-ND-A4WC-01 12 124326058 124326058 G T DNAH10 Nonsense_Mutation p.E1658* 0.30 TCGA-ND-A4WC-01 12 124371784 124371784 G A DNAH10 Silent p.A2855A 0.22 TCGA-ND-A4WC-01 12 124831140 124831140 C T NCOR2 Silent p.P1443P 0.35 TCGA-ND-A4WC-01 12 12491458 12491458 C T MANSC1 Missense_Mutation p.R87Q 0.13 deleterious(0.04) possibly_damaging(0.598) TCGA-ND-A4WC-01 12 12633209 12633209 C T DUSP16 Missense_Mutation p.A255T 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 12 128899720 128899720 G T TMEM132C Nonsense_Mutation p.E177* 0.44 TCGA-ND-A4WC-01 12 129558971 129558971 C A TMEM132D Nonsense_Mutation p.E917* 0.39 TCGA-ND-A4WC-01 12 130847640 130847640 G A PIWIL1 Missense_Mutation p.E716K 0.35 deleterious(0) probably_damaging(0.947) TCGA-ND-A4WC-01 12 131456095 131456095 A G GPR133 Missense_Mutation p.I94V 0.31 tolerated_low_confidence(0.09) benign(0.414) TCGA-ND-A4WC-01 12 132479477 132479477 G T EP400 Nonsense_Mutation p.E935* 0.18 TCGA-ND-A4WC-01 12 132688051 132688051 G A GALNT9 Missense_Mutation p.S55L 0.46 deleterious(0.02) benign(0.001) TCGA-ND-A4WC-01 12 133253184 133253184 G C POLE Missense_Mutation p.P286R 0.32 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 133502395 133502395 C A ZNF605 Missense_Mutation p.R528I 0.29 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 12 133727724 133727724 G T CTD-2140B24.4 Missense_Mutation p.K48N 0.30 tolerated(0.13) benign(0.014) TCGA-ND-A4WC-01 12 133779416 133779416 C A ZNF268 Missense_Mutation p.H382N 0.27 deleterious(0) probably_damaging(0.984) TCGA-ND-A4WC-01 12 133781007 133781007 G T ZNF268 Missense_Mutation p.R912I 0.25 deleterious(0.01) probably_damaging(0.958) TCGA-ND-A4WC-01 12 14947660 14947660 G A WBP11 Missense_Mutation p.R178W 0.42 tolerated(0.14) unknown(0) TCGA-ND-A4WC-01 12 15262170 15262170 C A RERG Missense_Mutation p.E158D 0.39 tolerated(0.33) benign(0.014) TCGA-ND-A4WC-01 12 15652380 15652380 C A PTPRO Missense_Mutation p.F171L 0.46 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-ND-A4WC-01 12 16704081 16704081 T G LMO3 3'UTR 0.27 TCGA-ND-A4WC-01 12 1740581 1740581 A G WNT5B Missense_Mutation p.T21A 0.34 tolerated(0.85) benign(0) TCGA-ND-A4WC-01 12 18435082 18435082 G T PIK3C2G Nonsense_Mutation p.E23* 0.30 TCGA-ND-A4WC-01 12 1909191 1909191 G A CACNA2D4 Silent p.G983G 0.29 TCGA-ND-A4WC-01 12 19512414 19512414 A C PLEKHA5 Missense_Mutation p.E1139D 0.12 tolerated(0.09) benign(0.003) TCGA-ND-A4WC-01 12 20801671 20801671 C A PDE3A Missense_Mutation p.A872D 0.32 deleterious(0) probably_damaging(0.958) TCGA-ND-A4WC-01 12 21207445 21207445 G A SLCO1B7 Silent p.A472A 0.26 TCGA-ND-A4WC-01 12 21294589 21294589 G A SLCO1B1 Silent p.L27L 0.34 TCGA-ND-A4WC-01 12 21422631 21422631 G T SLCO1A2 Missense_Mutation p.L622I 0.38 tolerated(0.39) benign(0.007) TCGA-ND-A4WC-01 12 21453329 21453329 T G SLCO1A2 Missense_Mutation p.D288A 0.32 tolerated(0.3) benign(0.01) TCGA-ND-A4WC-01 12 21615024 21615024 A G PYROXD1 Silent p.P321P 0.21 TCGA-ND-A4WC-01 12 21733410 21733410 C T GYS2 Missense_Mutation p.D57N 0.30 tolerated(0.1) benign(0.02) TCGA-ND-A4WC-01 12 21757593 21757593 G T GYS2 5'UTR 0.36 TCGA-ND-A4WC-01 12 22025633 22025633 T C ABCC9 Silent p.G708G 0.39 TCGA-ND-A4WC-01 12 22063775 22063775 G T ABCC9 Silent p.L383L 0.30 TCGA-ND-A4WC-01 12 22609946 22609946 T G C2CD5 Missense_Mutation p.I895L 0.38 tolerated(1) benign(0.019) TCGA-ND-A4WC-01 12 22635604 22635604 C T C2CD5 Missense_Mutation p.E542K 0.42 deleterious(0) possibly_damaging(0.811) TCGA-ND-A4WC-01 12 25264728 25264728 A C CASC1 Missense_Mutation p.F586C 0.38 tolerated(0.12) probably_damaging(0.917) TCGA-ND-A4WC-01 12 25297311 25297311 A T CASC1 Silent p.I330I 0.33 TCGA-ND-A4WC-01 12 25299943 25299943 C T CASC1 Silent p.K227K 0.34 TCGA-ND-A4WC-01 12 2676775 2676775 G A CACNA1C Silent p.E570E 0.25 TCGA-ND-A4WC-01 12 26775334 26775334 C A ITPR2 Nonsense_Mutation p.E1043* 0.55 TCGA-ND-A4WC-01 12 2763047 2763047 A G CACNA1C Missense_Mutation p.Y1422C 0.26 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 12 27869353 27869353 G A MRPS35 Missense_Mutation p.V95M 0.29 deleterious(0.05) benign(0.022) TCGA-ND-A4WC-01 12 29642678 29642678 C T OVCH1 Missense_Mutation p.E193K 0.41 deleterious(0.01) probably_damaging(0.955) TCGA-ND-A4WC-01 12 29659799 29659799 G A TMTC1 Nonsense_Mutation p.R877* 0.32 TCGA-ND-A4WC-01 12 2997159 2997159 G A RHNO1 Missense_Mutation p.R84Q 0.32 deleterious(0.05) possibly_damaging(0.736) TCGA-ND-A4WC-01 12 3018701 3018701 C T TULP3 Silent p.F16F 0.33 TCGA-ND-A4WC-01 12 3031488 3031488 C T TULP3 Missense_Mutation p.S105F 0.35 deleterious(0.01) probably_damaging(0.974) TCGA-ND-A4WC-01 12 30881756 30881756 T G CAPRIN2 Missense_Mutation p.E536D 0.28 tolerated(0.27) benign(0.008) TCGA-ND-A4WC-01 12 31579260 31579260 G A DENND5B Silent p.F735F 0.39 TCGA-ND-A4WC-01 12 32751469 32751469 A G FGD4 Silent p.E213E 0.34 TCGA-ND-A4WC-01 12 32754280 32754280 C A FGD4 Silent p.I253I 0.34 TCGA-ND-A4WC-01 12 32772699 32772699 C T FGD4 Missense_Mutation p.T469I 0.31 deleterious(0.04) benign(0.155) TCGA-ND-A4WC-01 12 32884447 32884447 T C DNM1L Splice_Site p.X452_splice 0.09 TCGA-ND-A4WC-01 12 32908477 32908477 A C YARS2 Missense_Mutation p.L111R 0.19 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 12 34175465 34175465 T G ALG10 5'UTR 0.37 TCGA-ND-A4WC-01 12 38714484 38714484 T G ALG10B Missense_Mutation p.F297L 0.24 deleterious(0.01) probably_damaging(0.914) TCGA-ND-A4WC-01 12 38714839 38714839 C T ALG10B Missense_Mutation p.R416C 0.26 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 39161529 39161529 C T CPNE8 Silent p.L161L 0.35 TCGA-ND-A4WC-01 12 39242380 39242380 C T CPNE8 Missense_Mutation p.E91K 0.19 deleterious(0) benign(0.243) TCGA-ND-A4WC-01 12 40010816 40010816 A C ABCD2 Missense_Mutation p.I365S 0.37 deleterious(0) probably_damaging(0.917) TCGA-ND-A4WC-01 12 40668394 40668394 A C LRRK2 Missense_Mutation p.N556H 0.21 tolerated(0.08) benign(0.012) TCGA-ND-A4WC-01 12 40749930 40749930 T G LRRK2 Missense_Mutation p.F2262V 0.29 deleterious(0.03) possibly_damaging(0.859) TCGA-ND-A4WC-01 12 41967015 41967015 G T PDZRN4 Nonsense_Mutation p.E812* 0.11 TCGA-ND-A4WC-01 12 43777415 43777415 C A ADAMTS20 Missense_Mutation p.K1581N 0.26 deleterious(0.01) possibly_damaging(0.642) TCGA-ND-A4WC-01 12 4398043 4398043 G A CCND2 Missense_Mutation p.A203T 0.17 deleterious(0) probably_damaging(0.922) TCGA-ND-A4WC-01 12 45097553 45097553 C T NELL2 Missense_Mutation p.R475Q 0.35 tolerated(0.07) benign(0.007) TCGA-ND-A4WC-01 12 45169892 45169892 G A NELL2 Silent p.C318C 0.27 TCGA-ND-A4WC-01 12 46246346 46246346 A G ARID2 Silent p.G1480G 0.36 TCGA-ND-A4WC-01 12 4668313 4668313 C A RAD51AP1 3'UTR 0.35 TCGA-ND-A4WC-01 12 4708218 4708218 G T DYRK4 Missense_Mutation p.K195N 0.33 deleterious(0) probably_damaging(0.976) TCGA-ND-A4WC-01 12 47471533 47471533 T C AMIGO2 Missense_Mutation p.Y418C 0.44 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 12 49087243 49087243 A C CCNT1 Missense_Mutation p.F585C 0.38 tolerated_low_confidence(0.08) possibly_damaging(0.695) TCGA-ND-A4WC-01 12 49088048 49088048 C T CCNT1 Missense_Mutation p.E317K 0.43 tolerated(0.65) benign(0.003) TCGA-ND-A4WC-01 12 49089871 49089871 T G CCNT1 Missense_Mutation p.K206T 0.27 deleterious(0) benign(0.214) TCGA-ND-A4WC-01 12 4920773 4920773 G T KCNA6 Missense_Mutation p.E522D 0.33 tolerated_low_confidence(0.69) possibly_damaging(0.636) TCGA-ND-A4WC-01 12 49315203 49315203 G A CCDC65 Missense_Mutation p.D478N 0.32 tolerated_low_confidence(0.33) benign(0.003) TCGA-ND-A4WC-01 12 49432215 49432215 C T KMT2D Missense_Mutation p.R2975H 0.12 benign(0.103) TCGA-ND-A4WC-01 12 49484166 49484166 C A DHH Missense_Mutation p.D223Y 0.25 deleterious(0) benign(0.199) TCGA-ND-A4WC-01 12 49725173 49725173 G A TROAP Missense_Mutation p.E759K 0.30 deleterious(0) benign(0.197) TCGA-ND-A4WC-01 12 50036498 50036498 G T FMNL3 3'UTR 0.19 TCGA-ND-A4WC-01 12 5021796 5021796 G T KCNA1 Nonsense_Mutation p.E418* 0.30 TCGA-ND-A4WC-01 12 50410486 50410486 T G RACGAP1 Missense_Mutation p.M5L 0.34 tolerated(0.24) benign(0) TCGA-ND-A4WC-01 12 50571158 50571158 C A LIMA1 Nonsense_Mutation p.E658* 0.31 TCGA-ND-A4WC-01 12 50847289 50847289 G A LARP4 Missense_Mutation p.R284Q 0.29 deleterious(0.02) benign(0.418) TCGA-ND-A4WC-01 12 51279214 51279214 G A TMPRSS12 Intron 0.33 TCGA-ND-A4WC-01 12 51399200 51399200 C T SLC11A2 Missense_Mutation p.R97H 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-ND-A4WC-01 12 51442897 51442897 A C LETMD1 Missense_Mutation p.N68T 0.24 tolerated(0.08) benign(0.15) TCGA-ND-A4WC-01 12 5154876 5154876 C A KCNA5 Nonsense_Mutation p.Y521* 0.33 TCGA-ND-A4WC-01 12 51695879 51695879 T G BIN2 Missense_Mutation p.E111D 0.10 tolerated(0.11) benign(0.086) TCGA-ND-A4WC-01 12 52115650 52115650 C T SCN8A Silent p.I652I 0.44 TCGA-ND-A4WC-01 12 52183109 52183109 C A SCN8A Silent p.I1442I 0.12 TCGA-ND-A4WC-01 12 52865252 52865252 C A KRT6C Missense_Mutation p.D289Y 0.20 deleterious(0) probably_damaging(0.979) TCGA-ND-A4WC-01 12 53167390 53167390 C A KRT76 Missense_Mutation p.E284D 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 12 53722254 53722254 G A SP7 Silent p.F324F 0.43 TCGA-ND-A4WC-01 12 53722395 53722395 C T SP7 Silent p.E277E 0.29 TCGA-ND-A4WC-01 12 53777010 53777010 A C SP1 Missense_Mutation p.T427P 0.37 tolerated(0.06) possibly_damaging(0.86) TCGA-ND-A4WC-01 12 53901163 53901163 G T NPFF Silent p.L32L 0.38 TCGA-ND-A4WC-01 12 54110096 54110096 T C CALCOCO1 Missense_Mutation p.K318R 0.41 tolerated(0.79) benign(0.101) TCGA-ND-A4WC-01 12 54383309 54383309 T G HOXC10 3'UTR 0.40 TCGA-ND-A4WC-01 12 54645982 54645982 T C CBX5 Missense_Mutation p.N56S 0.34 deleterious(0.05) probably_damaging(0.983) TCGA-ND-A4WC-01 12 54963137 54963137 A G PDE1B Missense_Mutation p.I133V 0.32 tolerated(0.05) probably_damaging(0.972) TCGA-ND-A4WC-01 12 55026990 55026990 G A LACRT Missense_Mutation p.A29V 0.37 tolerated_low_confidence(0.34) possibly_damaging(0.682) TCGA-ND-A4WC-01 12 55356262 55356262 G A TESPA1 Missense_Mutation p.R474C 0.31 tolerated_low_confidence(0.11) benign(0.004) TCGA-ND-A4WC-01 12 55863898 55863898 C A OR6C70 Nonsense_Mutation p.E9* 0.34 TCGA-ND-A4WC-01 12 56031002 56031002 C T OR10P1 Silent p.G109G 0.32 TCGA-ND-A4WC-01 12 56031269 56031269 C A OR10P1 Silent p.I198I 0.40 TCGA-ND-A4WC-01 12 56090195 56090195 G A ITGA7 Missense_Mutation p.R591W 0.45 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 56143605 56143605 A G GDF11 Missense_Mutation p.K388R 0.10 tolerated(0.18) benign(0.013) TCGA-ND-A4WC-01 12 56554045 56554045 A G MYL6 Missense_Mutation p.E123G 0.33 deleterious(0.03) possibly_damaging(0.619) TCGA-ND-A4WC-01 12 57039021 57039021 T C ATP5B Missense_Mutation p.I82V 0.15 deleterious_low_confidence(0.04) benign(0.097) TCGA-ND-A4WC-01 12 57114403 57114403 G T NACA Missense_Mutation p.S304Y 0.42 deleterious_low_confidence(0.05) benign(0.001) TCGA-ND-A4WC-01 12 57431423 57431423 T C MYO1A Missense_Mutation p.E655G 0.35 deleterious(0.01) possibly_damaging(0.474) TCGA-ND-A4WC-01 12 57588394 57588394 C T LRP1 Silent p.F2701F 0.44 TCGA-ND-A4WC-01 12 57642498 57642498 G A STAC3 Silent p.F141F 0.35 TCGA-ND-A4WC-01 12 57865362 57865362 A G GLI1 Missense_Mutation p.T947A 0.35 tolerated_low_confidence(0.53) benign(0.001) TCGA-ND-A4WC-01 12 57867888 57867888 G T ARHGAP9 Missense_Mutation p.L619I 0.39 deleterious(0.01) possibly_damaging(0.892) TCGA-ND-A4WC-01 12 57910667 57910667 G A DDIT3 Silent p.I168I 0.29 TCGA-ND-A4WC-01 12 58002452 58002452 A C DTX3 Silent p.T300T 0.28 TCGA-ND-A4WC-01 12 58010626 58010626 A C ARHGEF25 Missense_Mutation p.K603N 0.38 tolerated_low_confidence(1) benign(0) TCGA-ND-A4WC-01 12 58197112 58197112 T C AVIL Missense_Mutation p.Q627R 0.43 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 12 58209764 58209764 T G AVIL Missense_Mutation p.R20S 0.30 tolerated(0.77) probably_damaging(0.931) TCGA-ND-A4WC-01 12 59274382 59274382 T G LRIG3 Missense_Mutation p.K594N 0.11 deleterious(0.02) probably_damaging(0.986) TCGA-ND-A4WC-01 12 60098718 60098718 G T SLC16A7 Nonsense_Mutation p.E46* 0.09 TCGA-ND-A4WC-01 12 6125981 6125981 T G VWF Silent p.P1703P 0.22 TCGA-ND-A4WC-01 12 62931428 62931428 C T MON2 Missense_Mutation p.A687V 0.32 deleterious(0) probably_damaging(0.975) TCGA-ND-A4WC-01 12 63182119 63182119 C T PPM1H Splice_Site p.X253_splice 0.31 TCGA-ND-A4WC-01 12 6427545 6427545 C T PLEKHG6 Silent p.L412L 0.38 TCGA-ND-A4WC-01 12 65639662 65639662 C T LEMD3 Silent p.L839L 0.29 TCGA-ND-A4WC-01 12 65857159 65857159 C A MSRB3 3'UTR 0.40 TCGA-ND-A4WC-01 12 66709096 66709096 A C HELB Missense_Mutation p.N645H 0.34 tolerated(0.13) benign(0.033) TCGA-ND-A4WC-01 12 6701195 6701195 T G CHD4 Missense_Mutation p.N993H 0.36 deleterious(0) possibly_damaging(0.751) TCGA-ND-A4WC-01 12 6709138 6709138 G T CHD4 Nonsense_Mutation p.S428* 0.40 TCGA-ND-A4WC-01 12 67700159 67700159 A C CAND1 Missense_Mutation p.K904T 0.42 deleterious(0) probably_damaging(0.92) TCGA-ND-A4WC-01 12 68051084 68051084 C T DYRK2 Missense_Mutation p.R133W 0.37 deleterious(0) possibly_damaging(0.462) TCGA-ND-A4WC-01 12 69084386 69084386 C A NUP107 Intron 0.32 TCGA-ND-A4WC-01 12 69096538 69096538 G T NUP107 Nonsense_Mutation p.E235* 0.37 TCGA-ND-A4WC-01 12 69650589 69650589 T C CPSF6 Missense_Mutation p.F163L 0.28 tolerated(0.05) unknown(0) TCGA-ND-A4WC-01 12 69968311 69968311 A T FRS2 Missense_Mutation p.E368V 0.36 tolerated(0.12) benign(0.014) TCGA-ND-A4WC-01 12 70048879 70048879 G T BEST3 Missense_Mutation p.N605K 0.34 tolerated_low_confidence(0.08) benign(0.034) TCGA-ND-A4WC-01 12 70149248 70149248 G A RAB3IP Silent p.P36P 0.32 TCGA-ND-A4WC-01 12 7086403 7086403 G A LPCAT3 Missense_Mutation p.L457F 0.36 tolerated(0.31) benign(0.008) TCGA-ND-A4WC-01 12 70946656 70946656 T C PTPRB Missense_Mutation p.N1763S 0.37 tolerated(0.1) benign(0.138) TCGA-ND-A4WC-01 12 71032806 71032806 A C PTPRR 3'UTR 0.43 TCGA-ND-A4WC-01 12 71155283 71155283 A G PTPRR Missense_Mutation p.S199P 0.22 tolerated(0.2) benign(0.002) TCGA-ND-A4WC-01 12 71523156 71523157 - T TSPAN8 Frame_Shift_Ins p.N205Kfs*16 0.28 TCGA-ND-A4WC-01 12 7188438 7188438 G A C1R Missense_Mutation p.P454S 0.11 tolerated(0.12) possibly_damaging(0.72) TCGA-ND-A4WC-01 12 71950416 71950416 G T LGR5 Missense_Mutation p.R221I 0.31 deleterious(0) possibly_damaging(0.901) TCGA-ND-A4WC-01 12 71978130 71978130 C T LGR5 Silent p.C780C 0.30 TCGA-ND-A4WC-01 12 72037952 72037952 G A ZFC3H1 Nonsense_Mutation p.R476* 0.19 TCGA-ND-A4WC-01 12 72771853 72771853 G T TRHDE Nonsense_Mutation p.E378* 0.21 TCGA-ND-A4WC-01 12 72955964 72955964 A C TRHDE Missense_Mutation p.K558T 0.33 tolerated(0.17) benign(0.237) TCGA-ND-A4WC-01 12 7302202 7302202 G A CLSTN3 Missense_Mutation p.E720K 0.26 tolerated(0.08) benign(0.053) TCGA-ND-A4WC-01 12 7520728 7520728 G T CD163L1 Missense_Mutation p.L1380I 0.28 tolerated(0.1) possibly_damaging(0.831) TCGA-ND-A4WC-01 12 75444659 75444659 G A KCNC2 Nonsense_Mutation p.R376* 0.12 TCGA-ND-A4WC-01 12 7639348 7639348 A C CD163 Nonsense_Mutation p.Y735* 0.28 TCGA-ND-A4WC-01 12 7649418 7649418 T C CD163 Missense_Mutation p.T364A 0.20 tolerated(0.15) possibly_damaging(0.734) TCGA-ND-A4WC-01 12 7803651 7803651 A G APOBEC1 Silent p.L177L 0.09 TCGA-ND-A4WC-01 12 78225316 78225316 G A NAV3 Silent p.P25P 0.31 TCGA-ND-A4WC-01 12 7842390 7842390 G A GDF3 3'UTR 0.50 TCGA-ND-A4WC-01 12 7842753 7842753 G T GDF3 Missense_Mutation p.N272K 0.36 tolerated(0.14) benign(0.207) TCGA-ND-A4WC-01 12 78562559 78562559 G T NAV3 Nonsense_Mutation p.E1632* 0.32 TCGA-ND-A4WC-01 12 78582038 78582038 C T NAV3 Missense_Mutation p.S1912F 0.43 deleterious(0.01) benign(0.272) TCGA-ND-A4WC-01 12 79679637 79679637 C A SYT1 Silent p.I79I 0.24 TCGA-ND-A4WC-01 12 80733009 80733009 G A OTOGL Missense_Mutation p.R1663Q 0.38 tolerated(0.65) benign(0.001) TCGA-ND-A4WC-01 12 81741356 81741356 G A PPFIA2 Nonsense_Mutation p.R730* 0.32 TCGA-ND-A4WC-01 12 81777837 81777837 C A PPFIA2 Nonsense_Mutation p.E317* 0.14 TCGA-ND-A4WC-01 12 8276482 8276482 C T CLEC4A Missense_Mutation p.S3L 0.42 tolerated(0.15) benign(0.048) TCGA-ND-A4WC-01 12 8329731 8329731 C A ZNF705A Missense_Mutation p.S152Y 0.07 tolerated(0.97) benign(0.099) TCGA-ND-A4WC-01 12 85285788 85285788 C A SLC6A15 Nonsense_Mutation p.E38* 0.13 TCGA-ND-A4WC-01 12 85439838 85439838 A C LRRIQ1 Missense_Mutation p.K126T 0.44 tolerated(0.28) benign(0.017) TCGA-ND-A4WC-01 12 85449618 85449618 A G LRRIQ1 Silent p.R349R 0.25 TCGA-ND-A4WC-01 12 85450583 85450583 G T LRRIQ1 Missense_Mutation p.R671I 0.29 tolerated(1) benign(0) TCGA-ND-A4WC-01 12 85677427 85677427 C T ALX1 Missense_Mutation p.L102F 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-ND-A4WC-01 12 85695307 85695307 C A ALX1 3'UTR 0.43 TCGA-ND-A4WC-01 12 86276047 86276047 A C NTS Missense_Mutation p.K136T 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-ND-A4WC-01 12 86383317 86383317 T G MGAT4C Missense_Mutation p.K3T 0.36 tolerated_low_confidence(0.21) benign(0.001) TCGA-ND-A4WC-01 12 88465107 88465107 C A CEP290 Missense_Mutation p.R1992I 0.42 possibly_damaging(0.724) TCGA-ND-A4WC-01 12 88542259 88542259 T C TMTC3 Missense_Mutation p.F56S 0.40 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 88910206 88910206 C A KITLG Missense_Mutation p.R142I 0.27 deleterious(0.05) benign(0.155) TCGA-ND-A4WC-01 12 89917476 89917476 A C GALNT4 Missense_Mutation p.F284C 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 8995860 8995860 G A A2ML1 Missense_Mutation p.G460D 0.36 tolerated(0.12) benign(0.17) TCGA-ND-A4WC-01 12 89992944 89992944 G A ATP2B1 Missense_Mutation p.R1101W 0.15 deleterious(0.01) possibly_damaging(0.889) TCGA-ND-A4WC-01 12 91347382 91347382 T G CCER1 Missense_Mutation p.S380R 0.43 deleterious(0) unknown(0) TCGA-ND-A4WC-01 12 91449541 91449541 A C KERA Missense_Mutation p.L173R 0.07 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 91502546 91502546 G T LUM Missense_Mutation p.L71I 0.10 tolerated(0.08) possibly_damaging(0.759) TCGA-ND-A4WC-01 12 9220799 9220799 T C A2M Missense_Mutation p.Y1463C 0.43 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 12 922930 922930 G A WNK1 Silent p.K294K 0.11 TCGA-ND-A4WC-01 12 9268487 9268487 A G A2M 5'UTR 0.40 TCGA-ND-A4WC-01 12 92821901 92821901 C T CLLU1OS Missense_Mutation p.E8K 0.43 deleterious_low_confidence(0) benign(0.001) TCGA-ND-A4WC-01 12 93100661 93100661 C A C12orf74 Nonsense_Mutation p.S85* 0.26 TCGA-ND-A4WC-01 12 93150140 93150140 C T PLEKHG7 Missense_Mutation p.L225F 0.35 deleterious(0.03) benign(0.072) TCGA-ND-A4WC-01 12 93163929 93163929 A C PLEKHG7 Missense_Mutation p.K366N 0.33 tolerated(0.24) benign(0.002) TCGA-ND-A4WC-01 12 93169899 93169899 C T EEA1 Missense_Mutation p.R1375Q 0.24 deleterious(0) probably_damaging(0.968) TCGA-ND-A4WC-01 12 93792607 93792607 G A NUDT4 Missense_Mutation p.D107N 0.23 deleterious(0.01) benign(0.176) TCGA-ND-A4WC-01 12 93968612 93968612 C A SOCS2 Missense_Mutation p.S85Y 0.40 deleterious(0) probably_damaging(0.954) TCGA-ND-A4WC-01 12 94543462 94543462 C T PLXNC1 Missense_Mutation p.L239F 0.45 tolerated(0.17) benign(0.339) TCGA-ND-A4WC-01 12 94575310 94575310 C A PLXNC1 Missense_Mutation p.P431H 0.32 deleterious(0.01) possibly_damaging(0.541) TCGA-ND-A4WC-01 12 94692488 94692488 A C PLXNC1 Missense_Mutation p.K1385N 0.23 deleterious(0) probably_damaging(0.981) TCGA-ND-A4WC-01 12 94703807 94703807 G A CCDC41 Nonsense_Mutation p.R630* 0.09 TCGA-ND-A4WC-01 12 95461145 95461145 C A NR2C1 Nonsense_Mutation p.E6* 0.34 TCGA-ND-A4WC-01 12 95483391 95483391 A G FGD6 Missense_Mutation p.I1311T 0.34 deleterious(0.03) possibly_damaging(0.459) TCGA-ND-A4WC-01 12 95531303 95531303 A G FGD6 Missense_Mutation p.F997L 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-ND-A4WC-01 12 95868101 95868101 C A METAP2 Missense_Mutation p.S49Y 0.34 deleterious_low_confidence(0) benign(0.037) TCGA-ND-A4WC-01 12 96052892 96052892 G T NTN4 Silent p.V619V 0.28 TCGA-ND-A4WC-01 12 98941517 98941517 A C TMPO Missense_Mutation p.K307Q 0.38 tolerated(0.09) probably_damaging(0.998) TCGA-ND-A4WC-01 13 100188971 100188971 A G TM9SF2 Missense_Mutation p.K191E 0.41 tolerated(0.19) possibly_damaging(0.794) TCGA-ND-A4WC-01 13 100518526 100518526 C A CLYBL Missense_Mutation p.L223I 0.38 tolerated(0.08) benign(0.248) TCGA-ND-A4WC-01 13 100617759 100617759 C A ZIC5 Nonsense_Mutation p.E622* 0.39 TCGA-ND-A4WC-01 13 101258625 101258625 G T TMTC4 Nonsense_Mutation p.Y707* 0.38 TCGA-ND-A4WC-01 13 101707628 101707628 C A NALCN 3'UTR 0.27 TCGA-ND-A4WC-01 13 102378997 102378997 T G FGF14 Missense_Mutation p.K196T 0.40 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 13 102379130 102379130 C A FGF14 Nonsense_Mutation p.E152* 0.17 TCGA-ND-A4WC-01 13 103299592 103299592 A G TPP2 Silent p.L842L 0.23 TCGA-ND-A4WC-01 13 103343277 103343277 C A METTL21C Missense_Mutation p.Q56H 0.32 deleterious(0.04) possibly_damaging(0.642) TCGA-ND-A4WC-01 13 103419691 103419691 C A TEX30 Nonsense_Mutation p.E146* 0.08 TCGA-ND-A4WC-01 13 108862660 108862660 G T LIG4 Missense_Mutation p.F319L 0.33 tolerated(0.05) possibly_damaging(0.456) TCGA-ND-A4WC-01 13 108922412 108922412 C T TNFSF13B Silent p.L57L 0.16 TCGA-ND-A4WC-01 13 110829261 110829261 T G COL4A1 Missense_Mutation p.K947T 0.23 benign(0.003) TCGA-ND-A4WC-01 13 113824786 113824786 T G PROZ Missense_Mutation p.N233K 0.35 deleterious(0.02) possibly_damaging(0.754) TCGA-ND-A4WC-01 13 113839908 113839908 G A PCID2 Intron 0.24 TCGA-ND-A4WC-01 13 115030682 115030682 G A CDC16 Missense_Mutation p.E524K 0.35 deleterious(0.01) benign(0.336) TCGA-ND-A4WC-01 13 19751395 19751395 C T TUBA3C Missense_Mutation p.R243Q 0.38 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-ND-A4WC-01 13 19752459 19752459 T G TUBA3C Missense_Mutation p.N101T 0.11 deleterious_low_confidence(0.01) benign(0.308) TCGA-ND-A4WC-01 13 19753677 19753677 C T TUBA3C Silent p.G10G 0.35 TCGA-ND-A4WC-01 13 20277238 20277238 C A PSPC1 3'UTR 0.33 TCGA-ND-A4WC-01 13 23853608 23853608 C T SGCG Nonsense_Mutation p.R166* 0.41 TCGA-ND-A4WC-01 13 23904369 23904369 T G SACS Missense_Mutation p.N4549T 0.31 probably_damaging(0.996) TCGA-ND-A4WC-01 13 23907353 23907353 T A SACS Missense_Mutation p.E3554D 0.53 probably_damaging(0.978) TCGA-ND-A4WC-01 13 23910423 23910423 C T SACS Missense_Mutation p.R2531K 0.36 probably_damaging(0.983) TCGA-ND-A4WC-01 13 23932558 23932558 C A SACS Nonsense_Mutation p.E174* 0.39 TCGA-ND-A4WC-01 13 24844882 24844882 A G SPATA13 Intron 0.44 TCGA-ND-A4WC-01 13 25144756 25144756 G T RP11-556N21.1 RNA 0.26 TCGA-ND-A4WC-01 13 25280568 25280568 G T ATP12A Missense_Mutation p.Q718H 0.27 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 13 25458144 25458144 C A CENPJ Nonsense_Mutation p.E1261* 0.33 TCGA-ND-A4WC-01 13 25480675 25480675 C A CENPJ Nonsense_Mutation p.E501* 0.34 TCGA-ND-A4WC-01 13 27847485 27847485 G T RASL11A Nonsense_Mutation p.E195* 0.36 TCGA-ND-A4WC-01 13 28602426 28602426 C A FLT3 Splice_Site p.X648_splice 0.38 TCGA-ND-A4WC-01 13 28862175 28862175 C A PAN3 Silent p.L813L 0.32 TCGA-ND-A4WC-01 13 29246494 29246494 C A POMP Missense_Mutation p.L95I 0.32 deleterious(0.02) benign(0.309) TCGA-ND-A4WC-01 13 30071434 30071434 C T MTUS2 Silent p.F1223F 0.27 TCGA-ND-A4WC-01 13 31231670 31231670 G T USPL1 Nonsense_Mutation p.E486* 0.32 TCGA-ND-A4WC-01 13 31526864 31526864 T C TEX26 Missense_Mutation p.Y72H 0.44 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 13 31713236 31713236 T G HSPH1 Missense_Mutation p.Q663H 0.27 deleterious(0.02) benign(0.014) TCGA-ND-A4WC-01 13 31714336 31714336 T G HSPH1 Missense_Mutation p.K655N 0.32 tolerated(0.07) probably_damaging(0.978) TCGA-ND-A4WC-01 13 32911760 32911760 A C BRCA2 Missense_Mutation p.M1090L 0.17 tolerated(0.37) benign(0.022) TCGA-ND-A4WC-01 13 32971071 32971071 C T BRCA2 Missense_Mutation p.L3180F 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 13 32972843 32972843 A G BRCA2 Missense_Mutation p.Q3398R 0.31 tolerated(0.27) benign(0.091) TCGA-ND-A4WC-01 13 33110531 33110531 T G N4BP2L2 Intron 0.32 TCGA-ND-A4WC-01 13 33111120 33111120 T G N4BP2L2 Intron 0.30 TCGA-ND-A4WC-01 13 33316752 33316752 T C PDS5B Silent p.V833V 0.35 TCGA-ND-A4WC-01 13 33332303 33332303 A C PDS5B Missense_Mutation p.E1045D 0.37 deleterious(0.03) benign(0.208) TCGA-ND-A4WC-01 13 33703873 33703873 G A STARD13 Missense_Mutation p.S314L 0.35 tolerated(0.34) benign(0.001) TCGA-ND-A4WC-01 13 37011779 37011779 T G CCNA1 Missense_Mutation p.I104S 0.32 tolerated(0.36) benign(0.118) TCGA-ND-A4WC-01 13 37524060 37524060 A G ALG5 3'UTR 0.37 TCGA-ND-A4WC-01 13 38160307 38160307 T G POSTN Missense_Mutation p.E288D 0.49 tolerated(0.14) possibly_damaging(0.734) TCGA-ND-A4WC-01 13 38211329 38211329 C A TRPC4 Missense_Mutation p.R887I 0.24 deleterious_low_confidence(0.01) benign(0.002) TCGA-ND-A4WC-01 13 38320162 38320162 T G TRPC4 Missense_Mutation p.N270T 0.07 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 13 39264612 39264612 G A FREM2 Missense_Mutation p.R1044K 0.09 tolerated(0.46) benign(0.001) TCGA-ND-A4WC-01 13 39265586 39265586 A C FREM2 Missense_Mutation p.N1369H 0.32 deleterious(0) possibly_damaging(0.837) TCGA-ND-A4WC-01 13 39616246 39616246 C A NHLRC3 Missense_Mutation p.F130L 0.44 tolerated(0.28) benign(0) TCGA-ND-A4WC-01 13 40261896 40261896 G T COG6 Missense_Mutation p.K323N 0.20 deleterious(0) probably_damaging(0.971) TCGA-ND-A4WC-01 13 41706285 41706285 G T KBTBD6 Silent p.S121S 0.36 TCGA-ND-A4WC-01 13 41706525 41706525 C A KBTBD6 Missense_Mutation p.K41N 0.37 tolerated(0.07) benign(0.199) TCGA-ND-A4WC-01 13 41767897 41767897 C T KBTBD7 Missense_Mutation p.R166Q 0.36 deleterious(0.03) probably_damaging(1) TCGA-ND-A4WC-01 13 41834816 41834816 C A MTRF1 Missense_Mutation p.Q76H 0.17 deleterious(0.02) possibly_damaging(0.728) TCGA-ND-A4WC-01 13 41933048 41933048 C T NAA16 Nonsense_Mutation p.R454* 0.34 TCGA-ND-A4WC-01 13 41943339 41943339 A C NAA16 Missense_Mutation p.N623H 0.43 tolerated(0.2) benign(0.008) TCGA-ND-A4WC-01 13 42361621 42361621 C A VWA8 Nonsense_Mutation p.E708* 0.33 TCGA-ND-A4WC-01 13 43181100 43181101 - T TNFSF11 3'UTR 0.17 TCGA-ND-A4WC-01 13 45010884 45010884 A C TSC22D1 Intron 0.22 TCGA-ND-A4WC-01 13 45148935 45148935 A G TSC22D1 Missense_Mutation p.C426R 0.40 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 13 45768375 45768375 G T KCTD4 Missense_Mutation p.L110I 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 13 46276932 46276933 - A SPERT Frame_Shift_Ins p.R35Kfs*6 0.24 TCGA-ND-A4WC-01 13 46942916 46942916 C T KIAA0226L Silent p.S190S 0.32 TCGA-ND-A4WC-01 13 48937070 48937070 G T RB1 Nonsense_Mutation p.E280* 0.33 TCGA-ND-A4WC-01 13 48955517 48955517 G T RB1 Nonsense_Mutation p.E545* 0.26 TCGA-ND-A4WC-01 13 49281071 49281071 T G CYSLTR2 Missense_Mutation p.F40V 0.28 tolerated(1) benign(0.113) TCGA-ND-A4WC-01 13 49776035 49776035 T C FNDC3A Silent p.A1029A 0.35 TCGA-ND-A4WC-01 13 49841919 49841919 T A CDADC1 Missense_Mutation p.L242I 0.27 tolerated(0.43) benign(0.001) TCGA-ND-A4WC-01 13 50204716 50204716 G T ARL11 Missense_Mutation p.G45C 0.33 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 13 52035186 52035186 C T RPS4XP16 RNA 0.19 TCGA-ND-A4WC-01 13 52439882 52439882 A C CCDC70 Missense_Mutation p.K123T 0.36 deleterious(0.01) possibly_damaging(0.489) TCGA-ND-A4WC-01 13 52548571 52548571 C A ATP7B Missense_Mutation p.R262I 0.26 tolerated(0.21) benign(0.392) TCGA-ND-A4WC-01 13 52604309 52604309 G A UTP14C Missense_Mutation p.E457K 0.34 tolerated(0.1) benign(0.117) TCGA-ND-A4WC-01 13 52971819 52971819 G A THSD1 Missense_Mutation p.T190I 0.26 tolerated(0.28) benign(0.023) TCGA-ND-A4WC-01 13 52976790 52976790 G T THSD1 5'UTR 0.40 TCGA-ND-A4WC-01 13 58206862 58206862 C T PCDH17 Missense_Mutation p.S61L 0.34 tolerated(0.08) benign(0.007) TCGA-ND-A4WC-01 13 60348377 60348377 G A DIAPH3 Missense_Mutation p.R1089W 0.40 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-ND-A4WC-01 13 61986041 61986041 G T PCDH20 Missense_Mutation p.L731I 0.35 tolerated(0.35) possibly_damaging(0.759) TCGA-ND-A4WC-01 13 61987061 61987061 G A PCDH20 Silent p.L391L 0.36 TCGA-ND-A4WC-01 13 61987509 61987509 A C PCDH20 Missense_Mutation p.I241M 0.37 tolerated(0.1) benign(0.005) TCGA-ND-A4WC-01 13 67802265 67802265 T G PCDH9 Missense_Mutation p.Y103S 0.35 tolerated(0.09) benign(0) TCGA-ND-A4WC-01 13 67802555 67802555 A C PCDH9 Missense_Mutation p.F6L 0.11 tolerated(0.65) benign(0.028) TCGA-ND-A4WC-01 13 73284334 73284334 C A MZT1 3'UTR 0.33 TCGA-ND-A4WC-01 13 73467988 73467988 A C PIBF1 Missense_Mutation p.K463N 0.26 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 13 76100668 76100668 G A COMMD6 3'UTR 0.28 TCGA-ND-A4WC-01 13 78130826 78130826 A C SCEL Missense_Mutation p.K47Q 0.11 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 13 78173503 78173503 G T SCEL Missense_Mutation p.K279N 0.27 deleterious(0.01) possibly_damaging(0.885) TCGA-ND-A4WC-01 13 78202083 78202083 G A SCEL Missense_Mutation p.D544N 0.48 deleterious(0.04) benign(0.132) TCGA-ND-A4WC-01 13 79213182 79213182 C A RNF219 Nonsense_Mutation p.E109* 0.22 TCGA-ND-A4WC-01 13 84454060 84454060 C T SLITRK1 Missense_Mutation p.G528E 0.38 tolerated(1) benign(0.01) TCGA-ND-A4WC-01 13 84454778 84454778 G T SLITRK1 Missense_Mutation p.P289T 0.30 tolerated(0.24) benign(0.014) TCGA-ND-A4WC-01 13 88328028 88328028 C T SLITRK5 Missense_Mutation p.R129W 0.37 deleterious(0.03) benign(0.081) TCGA-ND-A4WC-01 13 88330517 88330517 C A SLITRK5 Missense_Mutation p.F958L 0.33 tolerated(0.61) benign(0.029) TCGA-ND-A4WC-01 13 95121172 95121172 G T DCT Missense_Mutation p.F141L 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-ND-A4WC-01 13 95231015 95231015 A C TGDS Missense_Mutation p.F210V 0.11 deleterious(0) probably_damaging(0.914) TCGA-ND-A4WC-01 13 95847160 95847160 C T ABCC4 Missense_Mutation p.R398H 0.16 tolerated(0.18) benign(0.001) TCGA-ND-A4WC-01 13 96443321 96443321 G T DNAJC3 3'UTR 0.41 TCGA-ND-A4WC-01 13 96555127 96555127 A C UGGT2 Missense_Mutation p.I828S 0.32 deleterious(0) possibly_damaging(0.851) TCGA-ND-A4WC-01 13 96589253 96589253 A C UGGT2 Missense_Mutation p.N634K 0.23 tolerated(0.06) benign(0.002) TCGA-ND-A4WC-01 13 99127579 99127579 C T STK24 Missense_Mutation p.A134T 0.25 deleterious(0.02) possibly_damaging(0.882) TCGA-ND-A4WC-01 13 99667807 99667807 C A DOCK9 Missense_Mutation p.R19I 0.33 deleterious_low_confidence(0) benign(0.003) TCGA-ND-A4WC-01 14 100376649 100376649 C A EML1 Nonsense_Mutation p.S456* 0.18 TCGA-ND-A4WC-01 14 100826997 100826997 G A WARS Missense_Mutation p.R106W 0.46 deleterious(0) possibly_damaging(0.552) TCGA-ND-A4WC-01 14 101005179 101005179 G T BEGAIN Missense_Mutation p.F303L 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 14 101500140 101500140 G A MIR495 RNA 0.50 TCGA-ND-A4WC-01 14 102729915 102729915 A C MOK Missense_Mutation p.L84R 0.28 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 14 103406031 103406031 T G CDC42BPB Missense_Mutation p.K1581N 0.09 deleterious(0) benign(0.24) TCGA-ND-A4WC-01 14 103803151 103803151 C A EIF5 Missense_Mutation p.L98I 0.32 deleterious(0.01) benign(0.03) TCGA-ND-A4WC-01 14 104143808 104143808 A C KLC1 Missense_Mutation p.K479T 0.47 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 14 105406167 105406167 T C AHNAK2 Silent p.R5207R 0.41 TCGA-ND-A4WC-01 14 105407539 105407539 G A AHNAK2 Missense_Mutation p.S4750L 0.25 benign(0.142) TCGA-ND-A4WC-01 14 105411897 105411897 G A AHNAK2 Silent p.A3297A 0.33 TCGA-ND-A4WC-01 14 105411964 105411964 T C AHNAK2 Missense_Mutation p.E3275G 0.35 benign(0.085) TCGA-ND-A4WC-01 14 105517481 105517481 C A GPR132 Missense_Mutation p.M331I 0.38 tolerated(0.4) benign(0) TCGA-ND-A4WC-01 14 105857575 105857575 C T PACS2 Missense_Mutation p.S703L 0.33 tolerated(0.75) possibly_damaging(0.626) TCGA-ND-A4WC-01 14 105860899 105860899 G A PACS2 Missense_Mutation p.D869N 0.29 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 14 106110409 106110409 G A IGHG2 Silent p.C109C 0.39 TCGA-ND-A4WC-01 14 106236046 106236046 G A IGHG3 Silent p.V253V 0.32 TCGA-ND-A4WC-01 14 106236822 106236822 G A IGHG3 Silent p.C129C 0.38 TCGA-ND-A4WC-01 14 106610781 106610781 C T IGHV3-15 5'UTR 0.36 TCGA-ND-A4WC-01 14 106963355 106963355 G T IGHV1-45 Silent p.T4T 0.25 TCGA-ND-A4WC-01 14 107198998 107198998 C A IGHV3-72 Missense_Mutation p.K97N 0.36 deleterious_low_confidence(0.04) benign(0.051) TCGA-ND-A4WC-01 14 20295871 20295871 G A OR4N2 Silent p.A88A 0.16 TCGA-ND-A4WC-01 14 20692492 20692492 C A OR11H6 Silent p.I208I 0.33 TCGA-ND-A4WC-01 14 20692796 20692796 C A OR11H6 Missense_Mutation p.L310I 0.33 deleterious(0) possibly_damaging(0.589) TCGA-ND-A4WC-01 14 20760161 20760161 C T TTC5 Missense_Mutation p.R395Q 0.36 tolerated(0.6) benign(0) TCGA-ND-A4WC-01 14 20763928 20763928 C T TTC5 Missense_Mutation p.R261Q 0.39 tolerated(0.68) benign(0) TCGA-ND-A4WC-01 14 20825862 20825862 C G PARP2 Missense_Mutation p.T553S 0.23 tolerated(0.26) benign(0.04) TCGA-ND-A4WC-01 14 20872882 20872882 T G TEP1 Missense_Mutation p.N307T 0.22 tolerated(0.4) benign(0.002) TCGA-ND-A4WC-01 14 20925288 20925288 G A APEX1 Missense_Mutation p.R193H 0.39 tolerated(0.16) possibly_damaging(0.589) TCGA-ND-A4WC-01 14 20979224 20979224 A C RNASE10 Missense_Mutation p.K198N 0.43 deleterious(0) possibly_damaging(0.493) TCGA-ND-A4WC-01 14 21460309 21460309 C T METTL17 Missense_Mutation p.R131C 0.36 deleterious(0.04) benign(0.049) TCGA-ND-A4WC-01 14 21542507 21542507 C T ARHGEF40 Silent p.P206P 0.28 TCGA-ND-A4WC-01 14 21793213 21793213 C T RPGRIP1 Silent p.G733G 0.29 TCGA-ND-A4WC-01 14 21795831 21795831 A C RPGRIP1 Missense_Mutation p.Q920H 0.47 tolerated(0.11) possibly_damaging(0.815) TCGA-ND-A4WC-01 14 21828672 21828672 G A SUPT16H Nonsense_Mutation p.R693* 0.29 TCGA-ND-A4WC-01 14 21859710 21859710 A C CHD8 Missense_Mutation p.L2326R 0.30 deleterious(0.01) probably_damaging(0.928) TCGA-ND-A4WC-01 14 21870219 21870219 T C CHD8 Missense_Mutation p.D1320G 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-ND-A4WC-01 14 21870647 21870647 G T CHD8 Missense_Mutation p.H1244N 0.27 deleterious(0) benign(0.192) TCGA-ND-A4WC-01 14 22309784 22309784 C T TRAV12-1 Silent p.F55F 0.32 TCGA-ND-A4WC-01 14 22951884 22951884 A C TRAJ57 3'Flank 0.44 TCGA-ND-A4WC-01 14 23242890 23242890 A G SLC7A7 Missense_Mutation p.S489P 0.35 deleterious(0.03) benign(0.221) TCGA-ND-A4WC-01 14 23282638 23282638 C A SLC7A7 5'UTR 0.41 TCGA-ND-A4WC-01 14 23847687 23847687 G A CMTM5 Missense_Mutation p.D86N 0.38 tolerated(0.14) benign(0.002) TCGA-ND-A4WC-01 14 23874928 23874928 C T MYH6 Missense_Mutation p.D85N 0.29 deleterious(0.02) benign(0.198) TCGA-ND-A4WC-01 14 23902789 23902789 G A MYH7 Silent p.I51I 0.34 TCGA-ND-A4WC-01 14 24040637 24040637 C T JPH4 Missense_Mutation p.D435N 0.31 tolerated(0.1) possibly_damaging(0.883) TCGA-ND-A4WC-01 14 24528924 24528924 C T LRRC16B Silent p.I617I 0.21 TCGA-ND-A4WC-01 14 24533552 24533552 C A LRRC16B Missense_Mutation p.S1026Y 0.31 tolerated(0.73) benign(0.028) TCGA-ND-A4WC-01 14 24649445 24649445 A C IPO4 3'UTR 0.47 TCGA-ND-A4WC-01 14 24808484 24808484 C A RIPK3 Nonsense_Mutation p.E70* 0.39 TCGA-ND-A4WC-01 14 24836377 24836377 T A NFATC4 Missense_Mutation p.F39L 0.24 deleterious_low_confidence(0.03) benign(0) TCGA-ND-A4WC-01 14 24975706 24975706 G T CMA1 Missense_Mutation p.S105Y 0.38 tolerated(0.61) benign(0.002) TCGA-ND-A4WC-01 14 25101296 25101296 G T GZMB Missense_Mutation p.A123D 0.20 tolerated(0.06) possibly_damaging(0.845) TCGA-ND-A4WC-01 14 31354209 31354209 G A COCH Intron 0.35 TCGA-ND-A4WC-01 14 31585633 31585633 G A HECTD1 Silent p.V1809V 0.42 TCGA-ND-A4WC-01 14 31614112 31614112 A C HECTD1 Missense_Mutation p.H844Q 0.44 deleterious(0) possibly_damaging(0.701) TCGA-ND-A4WC-01 14 31637631 31637631 C A HECTD1 Missense_Mutation p.D499Y 0.40 deleterious(0.02) possibly_damaging(0.549) TCGA-ND-A4WC-01 14 31762386 31762386 G A RP11-596D21.1 Intron 0.30 TCGA-ND-A4WC-01 14 31828138 31828138 A C HEATR5A Missense_Mutation p.F440V 0.31 tolerated(0.08) benign(0) TCGA-ND-A4WC-01 14 32315743 32315743 T G NUBPL Missense_Mutation p.F254V 0.43 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 14 32560867 32560867 T C ARHGAP5 Missense_Mutation p.I331T 0.38 deleterious(0.02) benign(0.347) TCGA-ND-A4WC-01 14 32561892 32561892 G A ARHGAP5 Missense_Mutation p.E673K 0.27 tolerated(0.12) possibly_damaging(0.611) TCGA-ND-A4WC-01 14 33290942 33290942 A G AKAP6 Missense_Mutation p.N1308S 0.26 tolerated(0.98) benign(0.003) TCGA-ND-A4WC-01 14 33292587 33292587 C A AKAP6 Silent p.V1856V 0.40 TCGA-ND-A4WC-01 14 34269487 34269487 C T NPAS3 Silent p.F658F 0.22 TCGA-ND-A4WC-01 14 34270072 34270072 C T NPAS3 Silent p.F853F 0.52 TCGA-ND-A4WC-01 14 36096694 36096694 G A RALGAPA1 Silent p.C1647C 0.34 TCGA-ND-A4WC-01 14 36133883 36133883 G A RALGAPA1 Missense_Mutation p.P1259S 0.30 tolerated(0.55) benign(0.01) TCGA-ND-A4WC-01 14 36155765 36155765 G A RALGAPA1 Nonsense_Mutation p.R848* 0.50 TCGA-ND-A4WC-01 14 37969124 37969124 C A MIPOL1 Missense_Mutation p.S348Y 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 14 38678969 38678969 C T SSTR1 Silent p.F125F 0.29 TCGA-ND-A4WC-01 14 38724396 38724396 C T CLEC14A Missense_Mutation p.E278K 0.34 tolerated(0.76) benign(0.004) TCGA-ND-A4WC-01 14 39639223 39639223 T C TRAPPC6B Missense_Mutation p.E26G 0.15 tolerated(0.17) benign(0.007) TCGA-ND-A4WC-01 14 39716361 39716361 G T MIA2 Missense_Mutation p.D195Y 0.09 deleterious(0.01) benign(0.277) TCGA-ND-A4WC-01 14 39784901 39784901 G T CTAGE5 Missense_Mutation p.E462D 0.25 deleterious(0) possibly_damaging(0.885) TCGA-ND-A4WC-01 14 44975624 44975624 C A FSCB Missense_Mutation p.K189N 0.27 tolerated(0.28) benign(0.143) TCGA-ND-A4WC-01 14 44975941 44975941 C A FSCB Nonsense_Mutation p.E84* 0.30 TCGA-ND-A4WC-01 14 45433195 45433195 G A FAM179B Missense_Mutation p.R524H 0.30 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 14 45535797 45535797 C T FAM179B Missense_Mutation p.R1473C 0.32 deleterious(0.02) benign(0.008) TCGA-ND-A4WC-01 14 45624629 45624629 G A FANCM Missense_Mutation p.E455K 0.47 deleterious(0) benign(0.168) TCGA-ND-A4WC-01 14 45633577 45633577 C T FANCM Missense_Mutation p.R533C 0.38 deleterious(0) probably_damaging(0.929) TCGA-ND-A4WC-01 14 47530619 47530619 T G MDGA2 Missense_Mutation p.E453A 0.35 deleterious(0.02) probably_damaging(0.972) TCGA-ND-A4WC-01 14 50118061 50118061 G T POLE2 Missense_Mutation p.R416S 0.26 deleterious(0) probably_damaging(0.986) TCGA-ND-A4WC-01 14 50244960 50244960 G A KLHDC2 Missense_Mutation p.D178N 0.34 tolerated(0.09) probably_damaging(0.976) TCGA-ND-A4WC-01 14 50802750 50802750 T C CDKL1 Intron 0.26 TCGA-ND-A4WC-01 14 51057742 51057742 A C ATL1 Silent p.G122G 0.45 TCGA-ND-A4WC-01 14 51210967 51210967 G A NIN Silent p.V1727V 0.29 TCGA-ND-A4WC-01 14 52194863 52194863 C A FRMD6 3'UTR 0.38 TCGA-ND-A4WC-01 14 52471321 52471321 C A C14orf166 3'UTR 0.29 TCGA-ND-A4WC-01 14 52949572 52949572 G A TXNDC16 Missense_Mutation p.A407V 0.45 tolerated(0.06) benign(0.315) TCGA-ND-A4WC-01 14 53224469 53224469 C A STYX Missense_Mutation p.L117I 0.49 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 14 53619307 53619307 C T DDHD1 Nonsense_Mutation p.W170* 0.24 TCGA-ND-A4WC-01 14 54417207 54417207 G A BMP4 Missense_Mutation p.S257L 0.31 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 14 55168871 55168871 C T SAMD4A Silent p.D96D 0.34 TCGA-ND-A4WC-01 14 55169170 55169170 C A SAMD4A Missense_Mutation p.S196Y 0.32 deleterious(0.01) probably_damaging(0.962) TCGA-ND-A4WC-01 14 55625460 55625460 C T DLGAP5 Splice_Site p.X552_splice 0.35 TCGA-ND-A4WC-01 14 55629731 55629731 G T DLGAP5 Silent p.V537V 0.39 TCGA-ND-A4WC-01 14 56078943 56078943 G T KTN1 Missense_Mutation p.K59N 0.29 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 14 56103931 56103931 T G KTN1 Missense_Mutation p.F522C 0.46 deleterious(0.02) benign(0.008) TCGA-ND-A4WC-01 14 56233531 56233531 C A RP11-813I20.2 Intron 0.31 TCGA-ND-A4WC-01 14 57876118 57876118 A G NAA30 Missense_Mutation p.T325A 0.33 deleterious(0) possibly_damaging(0.874) TCGA-ND-A4WC-01 14 58701269 58701269 G T ACTR10 Nonstop_Mutation p.*418Yext*4 0.14 TCGA-ND-A4WC-01 14 58965566 58965566 G A KIAA0586 Silent p.E1405E 0.13 TCGA-ND-A4WC-01 14 59792754 59792754 C T DAAM1 Missense_Mutation p.P378L 0.11 deleterious(0) unknown(0) TCGA-ND-A4WC-01 14 59835509 59835509 C T DAAM1 Missense_Mutation p.R1057C 0.37 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 14 60574497 60574497 T G PCNXL4 Intron 0.36 TCGA-ND-A4WC-01 14 61115666 61115666 G T SIX1 Missense_Mutation p.P81H 0.29 deleterious(0.03) benign(0.076) TCGA-ND-A4WC-01 14 61275130 61275130 A G MNAT1 Missense_Mutation p.K135R 0.50 tolerated(0.41) benign(0.014) TCGA-ND-A4WC-01 14 61444313 61444313 T C TRMT5 Silent p.V237V 0.37 TCGA-ND-A4WC-01 14 62162497 62162497 G T HIF1A 5'Flank 0.25 TCGA-ND-A4WC-01 14 62249055 62249055 A G SNAPC1 Missense_Mutation p.K306E 0.37 tolerated(0.4) benign(0.001) TCGA-ND-A4WC-01 14 64066363 64066363 G A WDR89 Nonsense_Mutation p.R100* 0.29 TCGA-ND-A4WC-01 14 64066622 64066622 A G WDR89 Silent p.I13I 0.09 TCGA-ND-A4WC-01 14 64421617 64421617 A C SYNE2 Missense_Mutation p.R257S 0.20 benign(0.079) TCGA-ND-A4WC-01 14 64430710 64430710 A C SYNE2 Missense_Mutation p.K328Q 0.48 possibly_damaging(0.841) TCGA-ND-A4WC-01 14 65197549 65197549 A G PLEKHG3 Missense_Mutation p.D144G 0.23 deleterious(0.01) possibly_damaging(0.62) TCGA-ND-A4WC-01 14 65208583 65208583 C T PLEKHG3 Missense_Mutation p.S727L 0.42 tolerated(0.07) possibly_damaging(0.754) TCGA-ND-A4WC-01 14 67745898 67745898 C T MPP5 Missense_Mutation p.S4F 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ND-A4WC-01 14 67847476 67847476 C T EIF2S1 Nonsense_Mutation p.R192* 0.29 TCGA-ND-A4WC-01 14 68353863 68353863 A C RAD51B Missense_Mutation p.K233T 0.36 tolerated(0.07) benign(0.21) TCGA-ND-A4WC-01 14 69588977 69588977 A C DCAF5 Missense_Mutation p.F105L 0.36 deleterious(0.03) benign(0.119) TCGA-ND-A4WC-01 14 69695675 69695675 G A EXD2 Missense_Mutation p.G159D 0.39 tolerated(0.52) benign(0.005) TCGA-ND-A4WC-01 14 69866118 69866118 C T SLC39A9 Missense_Mutation p.S11F 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-ND-A4WC-01 14 70633726 70633726 C T SLC8A3 Missense_Mutation p.D472N 0.32 deleterious(0) probably_damaging(0.985) TCGA-ND-A4WC-01 14 70713070 70713070 C A ADAM21P1 RNA 0.11 TCGA-ND-A4WC-01 14 70714127 70714127 G T ADAM21P1 RNA 0.30 TCGA-ND-A4WC-01 14 70924467 70924467 C A ADAM21 Missense_Mutation p.S84Y 0.11 deleterious(0.03) possibly_damaging(0.779) TCGA-ND-A4WC-01 14 71205013 71205013 G A MAP3K9 Missense_Mutation p.T598M 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 14 71478246 71478246 C T PCNX Nonsense_Mutation p.R920* 0.14 TCGA-ND-A4WC-01 14 73138003 73138003 G A DPF3 Silent p.A305A 0.41 TCGA-ND-A4WC-01 14 74179915 74179915 T C PNMA1 Missense_Mutation p.Y143C 0.42 deleterious(0.02) possibly_damaging(0.854) TCGA-ND-A4WC-01 14 74363124 74363124 A G ZNF410 Missense_Mutation p.Q109R 0.34 tolerated_low_confidence(0.39) probably_damaging(0.983) TCGA-ND-A4WC-01 14 74539002 74539002 A C ALDH6A1 Silent p.A84A 0.37 TCGA-ND-A4WC-01 14 74823942 74823942 G A VRTN Silent p.T152T 0.28 TCGA-ND-A4WC-01 14 75506691 75506691 C T MLH3 Missense_Mutation p.A1165T 0.43 deleterious(0.03) probably_damaging(0.925) TCGA-ND-A4WC-01 14 75515305 75515305 T G MLH3 Missense_Mutation p.K352Q 0.46 tolerated(0.11) benign(0.027) TCGA-ND-A4WC-01 14 75537671 75537671 G A ZC2HC1C Missense_Mutation p.R132Q 0.38 tolerated(0.06) benign(0.096) TCGA-ND-A4WC-01 14 77580149 77580149 G A CIPC Missense_Mutation p.G230S 0.31 tolerated(0.79) benign(0.056) TCGA-ND-A4WC-01 14 77605688 77605688 A G ZDHHC22 Missense_Mutation p.Y132H 0.62 tolerated(0.13) benign(0.098) TCGA-ND-A4WC-01 14 77737225 77737225 C T NGB Missense_Mutation p.S19N 0.33 tolerated(0.76) benign(0) TCGA-ND-A4WC-01 14 77751907 77751907 G T POMT2 Silent p.I467I 0.33 TCGA-ND-A4WC-01 14 77844235 77844235 T C SAMD15 Silent p.D158D 0.39 TCGA-ND-A4WC-01 14 81422098 81422098 C T TSHR Missense_Mutation p.S25L 0.39 tolerated(0.79) benign(0.001) TCGA-ND-A4WC-01 14 81610603 81610603 A G TSHR Missense_Mutation p.N734S 0.37 tolerated_low_confidence(0.36) benign(0.012) TCGA-ND-A4WC-01 14 88407879 88407879 T C GALC Missense_Mutation p.D565G 0.41 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 14 88789139 88789139 T G KCNK10 Missense_Mutation p.K2Q 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-ND-A4WC-01 14 88892857 88892857 G A SPATA7 Silent p.S218S 0.33 TCGA-ND-A4WC-01 14 89131693 89131693 G A EML5 Nonsense_Mutation p.R1089* 0.47 TCGA-ND-A4WC-01 14 89202808 89202808 A T EML5 Missense_Mutation p.F317I 0.37 tolerated(0.4) benign(0.086) TCGA-ND-A4WC-01 14 90429920 90429920 T G TDP1 Missense_Mutation p.I154M 0.12 tolerated(0.08) benign(0.027) TCGA-ND-A4WC-01 14 90871115 90871115 T G CALM1 3'UTR 0.20 TCGA-ND-A4WC-01 14 91338638 91338638 A G RPS6KA5 Missense_Mutation p.F730S 0.42 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 14 92139243 92139243 G A CATSPERB Missense_Mutation p.R366C 0.34 tolerated(0.15) benign(0.431) TCGA-ND-A4WC-01 14 92159544 92159544 A C CATSPERB Missense_Mutation p.F253V 0.26 tolerated(0.09) benign(0.013) TCGA-ND-A4WC-01 14 92353567 92353567 C A FBLN5 Nonsense_Mutation p.E237* 0.38 TCGA-ND-A4WC-01 14 92436010 92436010 G T TRIP11 3'UTR 0.24 TCGA-ND-A4WC-01 14 93653028 93653028 G A TMEM251 3'UTR 0.32 TCGA-ND-A4WC-01 14 94007016 94007016 G T UNC79 Nonsense_Mutation p.E278* 0.31 TCGA-ND-A4WC-01 14 94121601 94121601 T G UNC79 Missense_Mutation p.L1964V 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-ND-A4WC-01 14 94750194 94750194 G T SERPINA10 3'UTR 0.17 TCGA-ND-A4WC-01 14 95560464 95560464 C T DICER1 Missense_Mutation p.D1709N 0.39 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 14 95884214 95884214 G A SYNE3 Silent p.F959F 0.37 TCGA-ND-A4WC-01 14 96157608 96157608 G T TCL1B Missense_Mutation p.D113Y 0.43 tolerated(0.22) benign(0.036) TCGA-ND-A4WC-01 14 96730613 96730613 G A BDKRB1 Nonsense_Mutation p.W198* 0.42 TCGA-ND-A4WC-01 14 96798990 96798990 C A ATG2B Nonsense_Mutation p.E404* 0.50 TCGA-ND-A4WC-01 14 99697799 99697799 C T BCL11B Missense_Mutation p.G175S 0.17 tolerated(0.17) benign(0.027) TCGA-ND-A4WC-01 15 101031086 101031086 C T CERS3 Missense_Mutation p.R75Q 0.32 tolerated(0.13) benign(0.003) TCGA-ND-A4WC-01 15 101031134 101031134 A C CERS3 Missense_Mutation p.F59C 0.40 tolerated(0.06) benign(0.01) TCGA-ND-A4WC-01 15 101109703 101109703 C A LINS Nonsense_Mutation p.E672* 0.32 TCGA-ND-A4WC-01 15 101432738 101432738 G A ALDH1A3 Silent p.G123G 0.35 TCGA-ND-A4WC-01 15 101464879 101464879 T G LRRK1 Missense_Mutation p.C14W 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-ND-A4WC-01 15 101609067 101609067 A G LRRK1 3'UTR 0.08 TCGA-ND-A4WC-01 15 101832242 101832242 A G SNRPA1 Silent p.R78R 0.37 TCGA-ND-A4WC-01 15 101938712 101938712 T C PCSK6 Missense_Mutation p.Y297C 0.41 deleterious(0) probably_damaging(0.993) TCGA-ND-A4WC-01 15 102359228 102359228 C A OR4F15 Missense_Mutation p.P280H 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-ND-A4WC-01 15 20496803 20496803 G T CHEK2P2 RNA 0.28 TCGA-ND-A4WC-01 15 20644257 20644257 T C HERC2P3 RNA 0.14 TCGA-ND-A4WC-01 15 22332692 22332692 T G RP11-69H14.6 RNA 0.22 TCGA-ND-A4WC-01 15 22368561 22368561 G T OR4M2 5'UTR 0.13 TCGA-ND-A4WC-01 15 22382507 22382507 T G OR4N4 Missense_Mutation p.F12C 0.07 deleterious(0) probably_damaging(0.968) TCGA-ND-A4WC-01 15 22383340 22383340 C T OR4N4 Missense_Mutation p.R290C 0.11 deleterious(0.02) benign(0.019) TCGA-ND-A4WC-01 15 22472986 22472986 C A IGHV4OR15-8 Missense_Mutation p.K95N 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-ND-A4WC-01 15 22933766 22933766 G A CYFIP1 Missense_Mutation p.E229K 0.36 tolerated(0.2) benign(0.425) TCGA-ND-A4WC-01 15 23889613 23889613 G T MAGEL2 Missense_Mutation p.L490M 0.32 tolerated(0.07) benign(0.176) TCGA-ND-A4WC-01 15 24922007 24922007 G A NPAP1 Silent p.S331S 0.34 TCGA-ND-A4WC-01 15 25302011 25302011 C T SNORD116-3 RNA 0.31 TCGA-ND-A4WC-01 15 25615832 25615832 G A UBE3A Missense_Mutation p.R500C 0.31 deleterious(0) possibly_damaging(0.886) TCGA-ND-A4WC-01 15 25925385 25925385 G A ATP10A Missense_Mutation p.A1250V 0.38 deleterious(0.04) benign(0.009) TCGA-ND-A4WC-01 15 26793009 26793009 C T GABRB3 Nonsense_Mutation p.W451* 0.09 TCGA-ND-A4WC-01 15 28414768 28414768 C A HERC2 Missense_Mutation p.S3364I 0.09 benign(0.209) TCGA-ND-A4WC-01 15 29406121 29406121 G A APBA2 Missense_Mutation p.V694I 0.30 tolerated(0.18) possibly_damaging(0.577) TCGA-ND-A4WC-01 15 30034962 30034962 C A TJP1 Missense_Mutation p.R345I 0.28 deleterious(0) possibly_damaging(0.594) TCGA-ND-A4WC-01 15 31196735 31196735 G A FAN1 5'UTR 0.45 TCGA-ND-A4WC-01 15 31197613 31197613 G T FAN1 Missense_Mutation p.E249D 0.19 tolerated(0.47) benign(0.101) TCGA-ND-A4WC-01 15 31210381 31210381 C T FAN1 Missense_Mutation p.T609M 0.18 tolerated(0.35) benign(0.277) TCGA-ND-A4WC-01 15 31251300 31251300 T C MTMR10 Silent p.P261P 0.33 TCGA-ND-A4WC-01 15 32917394 32917394 G A ARHGAP11A Missense_Mutation p.R222Q 0.47 deleterious(0.05) benign(0.338) TCGA-ND-A4WC-01 15 32929102 32929102 G T ARHGAP11A Missense_Mutation p.D710Y 0.41 deleterious(0) possibly_damaging(0.88) TCGA-ND-A4WC-01 15 32929515 32929515 T G ARHGAP11A Silent p.S847S 0.42 TCGA-ND-A4WC-01 15 33261472 33261472 C A FMN1 Missense_Mutation p.E587D 0.06 deleterious(0.01) unknown(0) TCGA-ND-A4WC-01 15 33954392 33954392 T G RYR3 Missense_Mutation p.L1554R 0.33 probably_damaging(0.96) TCGA-ND-A4WC-01 15 34040342 34040342 C T RYR3 Nonsense_Mutation p.R2673* 0.28 TCGA-ND-A4WC-01 15 34049726 34049726 C A RYR3 Missense_Mutation p.F2878L 0.35 probably_damaging(0.998) TCGA-ND-A4WC-01 15 34080594 34080594 C T RYR3 Silent p.F3255F 0.29 TCGA-ND-A4WC-01 15 34115220 34115220 G T RYR3 Missense_Mutation p.E3673D 0.23 benign(0.023) TCGA-ND-A4WC-01 15 34123245 34123245 C A RYR3 Missense_Mutation p.L3806M 0.29 possibly_damaging(0.649) TCGA-ND-A4WC-01 15 34130278 34130278 G A RYR3 Missense_Mutation p.E4033K 0.35 probably_damaging(0.996) TCGA-ND-A4WC-01 15 34356260 34356260 C A CHRM5 Missense_Mutation p.L448I 0.36 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 15 34531322 34531322 A C SLC12A6 Missense_Mutation p.F826V 0.33 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 15 37387806 37387806 C T MEIS2 Missense_Mutation p.E133K 0.31 deleterious(0.01) possibly_damaging(0.893) TCGA-ND-A4WC-01 15 38766438 38766438 G A FAM98B Missense_Mutation p.R223Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 15 40599857 40599857 G T PLCB2 Missense_Mutation p.P6H 0.10 tolerated_low_confidence(0.07) unknown(0) TCGA-ND-A4WC-01 15 40754371 40754371 C T BAHD1 Missense_Mutation p.R565C 0.38 tolerated(0.06) benign(0) TCGA-ND-A4WC-01 15 40954496 40954496 C A CASC5 3'UTR 0.21 TCGA-ND-A4WC-01 15 41680707 41680707 T C NDUFAF1 Missense_Mutation p.K258R 0.27 deleterious(0.02) probably_damaging(1) TCGA-ND-A4WC-01 15 42040968 42040968 T G MGA Silent p.L1782L 0.20 TCGA-ND-A4WC-01 15 42136685 42136685 T G PLA2G4B Missense_Mutation p.I530S 0.07 deleterious(0) benign(0.043) TCGA-ND-A4WC-01 15 42143119 42143119 C A SPTBN5 Missense_Mutation p.E3618D 0.50 benign(0.382) TCGA-ND-A4WC-01 15 42275988 42275988 C A PLA2G4E Missense_Mutation p.E857D 0.45 deleterious(0.01) benign(0.345) TCGA-ND-A4WC-01 15 42742156 42742156 G A ZNF106 Missense_Mutation p.P749S 0.21 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 15 42742690 42742690 C A ZNF106 Nonsense_Mutation p.E571* 0.28 TCGA-ND-A4WC-01 15 42807447 42807447 G A SNAP23 Missense_Mutation p.R54H 0.20 deleterious(0.04) benign(0.097) TCGA-ND-A4WC-01 15 43503726 43503726 G T EPB42 Missense_Mutation p.A176D 0.17 tolerated(0.47) benign(0.03) TCGA-ND-A4WC-01 15 43628012 43628012 G T ADAL Missense_Mutation p.R61I 0.35 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 15 43892823 43892823 C A STRC Missense_Mutation p.E1634D 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-ND-A4WC-01 15 44180393 44180393 G A FRMD5 Silent p.I288I 0.33 TCGA-ND-A4WC-01 15 44673090 44673090 T G CASC4 Missense_Mutation p.L330V 0.27 tolerated(0.22) benign(0.127) TCGA-ND-A4WC-01 15 44789312 44789312 G A CTDSPL2 Silent p.P286P 0.26 TCGA-ND-A4WC-01 15 44811443 44811443 C A CTDSPL2 Missense_Mutation p.L397I 0.35 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 15 44943956 44943956 T G SPG11 Missense_Mutation p.N397H 0.38 tolerated(0.07) benign(0) TCGA-ND-A4WC-01 15 45270924 45270924 A C C15orf43 3'UTR 0.25 TCGA-ND-A4WC-01 15 48052094 48052094 C T SEMA6D Silent p.V33V 0.40 TCGA-ND-A4WC-01 15 48434526 48434526 A C SLC24A5 Missense_Mutation p.K494T 0.14 tolerated(0.26) benign(0.063) TCGA-ND-A4WC-01 15 48580301 48580301 A C SLC12A1 Missense_Mutation p.E897D 0.40 tolerated(0.23) benign(0.109) TCGA-ND-A4WC-01 15 48594949 48594949 G A SLC12A1 Missense_Mutation p.S1056N 0.31 deleterious(0) benign(0.14) TCGA-ND-A4WC-01 15 48776136 48776136 G A FBN1 Silent p.I1239I 0.36 TCGA-ND-A4WC-01 15 49083511 49083511 C A CEP152 Nonsense_Mutation p.E299* 0.46 TCGA-ND-A4WC-01 15 49775360 49775360 T G FGF7 Missense_Mutation p.I100S 0.23 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 15 50366349 50366349 T C ATP8B4 Missense_Mutation p.E21G 0.37 tolerated(0.11) benign(0.002) TCGA-ND-A4WC-01 15 50769684 50769684 G T USP8 Missense_Mutation p.K402N 0.36 deleterious(0.02) probably_damaging(0.977) TCGA-ND-A4WC-01 15 51201024 51201024 C A AP4E1 Missense_Mutation p.L17M 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-ND-A4WC-01 15 51285572 51285572 A C AP4E1 Missense_Mutation p.N699T 0.23 tolerated(0.35) benign(0.003) TCGA-ND-A4WC-01 15 52538226 52538226 T A MYO5C Nonsense_Mutation p.R665* 0.23 TCGA-ND-A4WC-01 15 52718065 52718065 G T MYO5A Silent p.I139I 0.36 TCGA-ND-A4WC-01 15 52900777 52900777 A C FAM214A Missense_Mutation p.N778K 0.46 tolerated(0.07) benign(0.041) TCGA-ND-A4WC-01 15 54307590 54307590 G T UNC13C Missense_Mutation p.M830I 0.41 tolerated_low_confidence(0.06) benign(0.001) TCGA-ND-A4WC-01 15 54919327 54919327 C A UNC13C 3'UTR 0.33 TCGA-ND-A4WC-01 15 55652205 55652205 T C CCPG1 Missense_Mutation p.Q589R 0.36 tolerated(0.29) benign(0.005) TCGA-ND-A4WC-01 15 55722836 55722836 T G DYX1C1 3'UTR 0.10 TCGA-ND-A4WC-01 15 55759161 55759161 T G DYX1C1 Silent p.R202R 0.24 TCGA-ND-A4WC-01 15 55912375 55912375 A G PRTG Silent p.G1096G 0.37 TCGA-ND-A4WC-01 15 56388073 56388073 T C RFX7 Missense_Mutation p.N618S 0.55 deleterious_low_confidence(0) benign(0.009) TCGA-ND-A4WC-01 15 56748695 56748695 C A MNS1 Nonsense_Mutation p.E84* 0.15 TCGA-ND-A4WC-01 15 56748713 56748713 C A MNS1 Nonsense_Mutation p.E78* 0.18 TCGA-ND-A4WC-01 15 57511760 57511760 C A TCF12 Intron 0.37 TCGA-ND-A4WC-01 15 57555431 57555431 C A TCF12 Silent p.S568S 0.12 TCGA-ND-A4WC-01 15 59179667 59179667 G A SLTM Silent p.F816F 0.34 TCGA-ND-A4WC-01 15 59399854 59399854 A C CCNB2 Missense_Mutation p.E84D 0.27 tolerated(0.05) benign(0.002) TCGA-ND-A4WC-01 15 59429475 59429475 A G MYO1E 3'UTR 0.50 TCGA-ND-A4WC-01 15 60741464 60741464 G T NARG2 Missense_Mutation p.L568I 0.40 tolerated(0.41) benign(0.111) TCGA-ND-A4WC-01 15 60748989 60748989 A C NARG2 Missense_Mutation p.I178S 0.35 deleterious(0.02) benign(0.007) TCGA-ND-A4WC-01 15 62306143 62306143 T G VPS13C Missense_Mutation p.I245L 0.33 tolerated(1) benign(0.128) TCGA-ND-A4WC-01 15 62315708 62315708 C A VPS13C Nonsense_Mutation p.E176* 0.31 TCGA-ND-A4WC-01 15 63618349 63618349 G A CA12 3'UTR 0.50 TCGA-ND-A4WC-01 15 63970231 63970231 G A HERC1 Nonsense_Mutation p.Q2295* 0.39 TCGA-ND-A4WC-01 15 63972977 63972977 T A HERC1 Splice_Site p.X2076_splice 0.42 TCGA-ND-A4WC-01 15 64668939 64668939 T G KIAA0101 Intron 0.46 TCGA-ND-A4WC-01 15 64673610 64673610 T G KIAA0101 5'UTR 0.38 TCGA-ND-A4WC-01 15 65223707 65223707 C T ANKDD1A Missense_Mutation p.S231L 0.40 tolerated(1) benign(0.002) TCGA-ND-A4WC-01 15 65295412 65295412 T C MTFMT Silent p.Q386Q 0.18 TCGA-ND-A4WC-01 15 65450140 65450140 G T CLPX Missense_Mutation p.S334Y 0.11 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 15 65489882 65489882 G T CILP Missense_Mutation p.F914L 0.35 deleterious(0) probably_damaging(0.977) TCGA-ND-A4WC-01 15 65621180 65621180 G T IGDCC3 3'UTR 0.42 TCGA-ND-A4WC-01 15 65959785 65959785 A G DENND4A Splice_Site p.X1746_splice 0.36 TCGA-ND-A4WC-01 15 66048662 66048662 C A DENND4A Nonsense_Mutation p.E43* 0.25 TCGA-ND-A4WC-01 15 66206168 66206168 G A MEGF11 Missense_Mutation p.R873W 0.20 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 15 66599214 66599214 C A DIS3L Missense_Mutation p.L116I 0.30 tolerated(0.07) benign(0.064) TCGA-ND-A4WC-01 15 66797746 66797746 C A RPL4 5'Flank 0.30 TCGA-ND-A4WC-01 15 68061960 68061960 T C MAP2K5 Silent p.V385V 0.12 TCGA-ND-A4WC-01 15 68378827 68378827 A G PIAS1 Missense_Mutation p.M70V 0.33 tolerated(0.38) benign(0) TCGA-ND-A4WC-01 15 68583077 68583077 G A FEM1B Missense_Mutation p.E461K 0.31 tolerated(0.49) benign(0.078) TCGA-ND-A4WC-01 15 68583595 68583595 A C FEM1B 3'UTR 0.30 TCGA-ND-A4WC-01 15 68654041 68654041 G A ITGA11 Missense_Mutation p.A120V 0.22 tolerated(0.05) probably_damaging(0.967) TCGA-ND-A4WC-01 15 69076874 69076874 C T ANP32A Missense_Mutation p.D130N 0.42 tolerated(0.3) benign(0.106) TCGA-ND-A4WC-01 15 69238254 69238254 C T SPESP1 Silent p.N127N 0.31 TCGA-ND-A4WC-01 15 69238515 69238515 T G SPESP1 Missense_Mutation p.F214L 0.41 tolerated(0.31) benign(0.007) TCGA-ND-A4WC-01 15 69238943 69238943 T G SPESP1 3'UTR 0.50 TCGA-ND-A4WC-01 15 69715499 69715499 C T KIF23 Nonsense_Mutation p.R189* 0.27 TCGA-ND-A4WC-01 15 70960671 70960671 T A UACA Missense_Mutation p.K784N 0.21 deleterious(0) possibly_damaging(0.756) TCGA-ND-A4WC-01 15 72190380 72190380 C A MYO9A Missense_Mutation p.K1488N 0.28 deleterious_low_confidence(0.01) benign(0.161) TCGA-ND-A4WC-01 15 72499185 72499185 G A PKM Missense_Mutation p.R342W 0.38 deleterious(0.01) possibly_damaging(0.783) TCGA-ND-A4WC-01 15 72855808 72855808 A G ARIH1 Missense_Mutation p.K293R 0.17 tolerated(1) benign(0.023) TCGA-ND-A4WC-01 15 73045231 73045231 G A ADPGK Silent p.V314V 0.47 TCGA-ND-A4WC-01 15 73470720 73470720 G T NEO1 Missense_Mutation p.D415Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 15 73566199 73566199 T C NEO1 Missense_Mutation p.W1005R 0.29 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 15 74174038 74174038 C A TBC1D21 Missense_Mutation p.F74L 0.31 deleterious(0.03) benign(0.063) TCGA-ND-A4WC-01 15 74924863 74924863 T G EDC3 3'UTR 0.41 TCGA-ND-A4WC-01 15 76073307 76073307 A C RN7SL319P 5'Flank 0.39 TCGA-ND-A4WC-01 15 76073366 76073366 A T RN7SL319P 5'Flank 0.35 TCGA-ND-A4WC-01 15 76462186 76462186 C A C15orf27 Silent p.I162I 0.36 TCGA-ND-A4WC-01 15 77329411 77329411 C T PSTPIP1 Missense_Mutation p.A382V 0.31 tolerated(0.66) benign(0.004) TCGA-ND-A4WC-01 15 77473298 77473298 G T PEAK1 Missense_Mutation p.S324Y 0.39 deleterious(0.01) possibly_damaging(0.73) TCGA-ND-A4WC-01 15 78215280 78215280 C A RP11-114H24.7 3'Flank 0.21 TCGA-ND-A4WC-01 15 78217391 78217391 C A RP11-114H24.7 3'Flank 0.35 TCGA-ND-A4WC-01 15 78557106 78557106 A C DNAJA4 Missense_Mutation p.M30L 0.28 deleterious(0) benign(0.426) TCGA-ND-A4WC-01 15 78633519 78633519 G A CRABP1 Missense_Mutation p.G69R 0.32 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 15 78805633 78805633 A G HYKK Missense_Mutation p.N68S 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-ND-A4WC-01 15 78837280 78837280 A C PSMA4 Missense_Mutation p.Q119H 0.40 tolerated(0.07) possibly_damaging(0.618) TCGA-ND-A4WC-01 15 79294116 79294116 G T RASGRF1 Silent p.S837S 0.33 TCGA-ND-A4WC-01 15 80137564 80137564 C T ST20-MTHFS Silent p.S176S 0.37 TCGA-ND-A4WC-01 15 80137599 80137599 C T ST20-MTHFS Missense_Mutation p.D165N 0.15 deleterious(0) possibly_damaging(0.879) TCGA-ND-A4WC-01 15 80253358 80253358 T G BCL2A1 3'UTR 0.36 TCGA-ND-A4WC-01 15 81565534 81565534 G T IL16 Missense_Mutation p.R260M 0.31 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 15 81598795 81598795 G T IL16 Missense_Mutation p.E1238D 0.31 tolerated(0.06) benign(0.051) TCGA-ND-A4WC-01 15 82575144 82575144 T G FAM154B Missense_Mutation p.F313C 0.39 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 15 83926268 83926268 G A BNC1 Missense_Mutation p.R971C 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 15 84558912 84558912 T G ADAMTSL3 Missense_Mutation p.V375G 0.13 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 15 85664054 85664054 C T PDE8A Silent p.V587V 0.34 TCGA-ND-A4WC-01 15 89198710 89198710 C T ISG20 Missense_Mutation p.S165F 0.35 deleterious(0.01) possibly_damaging(0.874) TCGA-ND-A4WC-01 15 89401045 89401045 T C ACAN Silent p.P1743P 0.33 TCGA-ND-A4WC-01 15 89817466 89817466 A C FANCI Missense_Mutation p.K348T 0.44 tolerated(0.15) benign(0.433) TCGA-ND-A4WC-01 15 90039673 90039673 C T RHCG Missense_Mutation p.E35K 0.30 tolerated(0.08) possibly_damaging(0.624) TCGA-ND-A4WC-01 15 90349269 90349269 G A ANPEP Silent p.F182F 0.08 TCGA-ND-A4WC-01 15 90630471 90630471 C A IDH2 Missense_Mutation p.K280N 0.39 tolerated_low_confidence(0.16) benign(0.01) TCGA-ND-A4WC-01 15 91827259 91827259 G A SV2B Missense_Mutation p.E506K 0.34 tolerated(0.45) benign(0.008) TCGA-ND-A4WC-01 15 99192775 99192775 T G IGF1R 5'UTR 0.55 TCGA-ND-A4WC-01 15 99500656 99500656 G A IGF1R Silent p.Q1363Q 0.34 TCGA-ND-A4WC-01 15 99672121 99672121 G T SYNM Nonsense_Mutation p.E1185* 0.39 TCGA-ND-A4WC-01 16 10274037 10274037 C T GRIN2A Missense_Mutation p.D78N 0.32 tolerated(0.66) probably_damaging(0.999) TCGA-ND-A4WC-01 16 10534236 10534236 C A ATF7IP2 Missense_Mutation p.L371I 0.29 deleterious(0.01) possibly_damaging(0.765) TCGA-ND-A4WC-01 16 1129540 1129540 C T SSTR5 Silent p.I224I 0.39 TCGA-ND-A4WC-01 16 1255242 1255242 C T CACNA1H Silent p.F860F 0.47 TCGA-ND-A4WC-01 16 1267977 1267977 C T CACNA1H Silent p.F1794F 0.40 TCGA-ND-A4WC-01 16 1270813 1270813 C A CACNA1H Missense_Mutation p.A2294D 0.29 tolerated_low_confidence(0.18) benign(0.159) TCGA-ND-A4WC-01 16 1270889 1270889 G T CACNA1H Missense_Mutation p.E2319D 0.32 deleterious_low_confidence(0.03) benign(0.197) TCGA-ND-A4WC-01 16 129447 129447 G T MPG Missense_Mutation p.K21N 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ND-A4WC-01 16 1394064 1394064 C T BAIAP3 Silent p.F511F 0.31 TCGA-ND-A4WC-01 16 14029408 14029408 C T ERCC4 Missense_Mutation p.S540L 0.35 deleterious(0.05) possibly_damaging(0.59) TCGA-ND-A4WC-01 16 14761493 14761493 A G BFAR Missense_Mutation p.T388A 0.30 deleterious(0.02) benign(0.265) TCGA-ND-A4WC-01 16 1510831 1510831 C T CLCN7 Missense_Mutation p.R157K 0.26 tolerated(0.95) benign(0) TCGA-ND-A4WC-01 16 15710987 15710987 A G KIAA0430 Missense_Mutation p.V1000A 0.15 deleterious(0.01) benign(0.045) TCGA-ND-A4WC-01 16 15833968 15833968 C A MYH11 Missense_Mutation p.K986N 0.33 benign(0.411) TCGA-ND-A4WC-01 16 16108405 16108405 A G ABCC1 Missense_Mutation p.I137V 0.29 tolerated(1) benign(0.003) TCGA-ND-A4WC-01 16 17202841 17202841 C T XYLT1 Missense_Mutation p.R864H 0.31 tolerated(0.42) benign(0.014) TCGA-ND-A4WC-01 16 17353254 17353254 G A XYLT1 Silent p.F168F 0.39 TCGA-ND-A4WC-01 16 18823418 18823418 C T SMG1 Silent p.Q3551Q 0.29 TCGA-ND-A4WC-01 16 19547870 19547870 A G CCP110 Silent p.P293P 0.10 TCGA-ND-A4WC-01 16 19656250 19656250 G T C16orf62 Missense_Mutation p.L725F 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-ND-A4WC-01 16 19702791 19702791 G A C16orf62 Missense_Mutation p.E971K 0.39 tolerated(0.06) benign(0.007) TCGA-ND-A4WC-01 16 20043162 20043162 A G GPR139 Silent p.F319F 0.39 TCGA-ND-A4WC-01 16 20491925 20491925 C T ACSM2A Nonsense_Mutation p.R438* 0.37 TCGA-ND-A4WC-01 16 20497922 20497922 G T ACSM2A Missense_Mutation p.K552N 0.10 deleterious(0) probably_damaging(0.974) TCGA-ND-A4WC-01 16 20682930 20682930 G A ACSM1 Silent p.F225F 0.28 TCGA-ND-A4WC-01 16 20748196 20748196 G T THUMPD1 3'UTR 0.26 TCGA-ND-A4WC-01 16 20807831 20807831 C T ERI2 3'UTR 0.16 TCGA-ND-A4WC-01 16 20944541 20944541 T C DNAH3 Missense_Mutation p.T4096A 0.35 deleterious(0) possibly_damaging(0.641) TCGA-ND-A4WC-01 16 20944632 20944632 A C DNAH3 Nonsense_Mutation p.Y4065* 0.09 TCGA-ND-A4WC-01 16 21011661 21011661 A T DNAH3 Missense_Mutation p.N2102K 0.33 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 16 21145624 21145624 C T DNAH3 Silent p.T346T 0.34 TCGA-ND-A4WC-01 16 21157311 21157311 G T DNAH3 Silent p.L72L 0.15 TCGA-ND-A4WC-01 16 21218215 21218215 C A ZP2 Missense_Mutation p.V143L 0.30 deleterious(0.05) benign(0.016) TCGA-ND-A4WC-01 16 22441222 22441222 C T RRN3P3 RNA 0.09 TCGA-ND-A4WC-01 16 23415025 23415025 G A COG7 Missense_Mutation p.S598L 0.38 tolerated(0.14) benign(0.169) TCGA-ND-A4WC-01 16 2354003 2354003 G A ABCA3 Silent p.F478F 0.42 TCGA-ND-A4WC-01 16 23573949 23573949 C T UBFD1 Missense_Mutation p.R212C 0.39 tolerated(0.06) benign(0.405) TCGA-ND-A4WC-01 16 23672543 23672543 T G DCTN5 Missense_Mutation p.C97G 0.23 deleterious(0.03) benign(0.15) TCGA-ND-A4WC-01 16 23848713 23848713 G A PRKCB Missense_Mutation p.G64E 0.33 deleterious(0) probably_damaging(0.985) TCGA-ND-A4WC-01 16 24358084 24358084 G A CACNG3 Missense_Mutation p.D81N 0.43 tolerated(1) probably_damaging(0.992) TCGA-ND-A4WC-01 16 24560270 24560270 C T RBBP6 Nonsense_Mutation p.R91* 0.50 TCGA-ND-A4WC-01 16 24567184 24567184 G A RBBP6 Silent p.T160T 0.33 TCGA-ND-A4WC-01 16 24582569 24582569 C A RBBP6 Missense_Mutation p.N1394K 0.46 tolerated_low_confidence(0.07) unknown(0) TCGA-ND-A4WC-01 16 24834300 24834300 G T TNRC6A Nonsense_Mutation p.E1827* 0.31 TCGA-ND-A4WC-01 16 27481617 27481617 G T GTF3C1 Missense_Mutation p.F1542L 0.30 tolerated(0.08) probably_damaging(0.971) TCGA-ND-A4WC-01 16 2813312 2813312 G T SRRM2 Missense_Mutation p.R928I 0.30 unknown(0) TCGA-ND-A4WC-01 16 28948597 28948597 G T CD19 Nonsense_Mutation p.E402* 0.14 TCGA-ND-A4WC-01 16 30002147 30002147 C T TAOK2 3'Flank 0.39 TCGA-ND-A4WC-01 16 30037010 30037010 C T FAM57B Intron 0.25 TCGA-ND-A4WC-01 16 30507506 30507506 T G ITGAL Missense_Mutation p.I531S 0.15 deleterious(0) possibly_damaging(0.826) TCGA-ND-A4WC-01 16 30680679 30680679 G T FBRS Missense_Mutation p.A886S 0.31 benign(0.218) TCGA-ND-A4WC-01 16 30939819 30939819 A C FBXL19 Missense_Mutation p.K240T 0.43 deleterious(0.01) possibly_damaging(0.838) TCGA-ND-A4WC-01 16 30970433 30970433 G A SETD1A Missense_Mutation p.E58K 0.34 benign(0.211) TCGA-ND-A4WC-01 16 31087953 31087953 G A ZNF646 Missense_Mutation p.R103H 0.50 tolerated(0.08) possibly_damaging(0.586) TCGA-ND-A4WC-01 16 31143831 31143831 G A PRSS8 Silent p.D208D 0.34 TCGA-ND-A4WC-01 16 31341654 31341654 G T ITGAM Missense_Mutation p.R1030I 0.27 tolerated(0.06) benign(0.206) TCGA-ND-A4WC-01 16 31471145 31471145 T G ARMC5 Silent p.A100A 0.40 TCGA-ND-A4WC-01 16 31500065 31500065 G A SLC5A2 Missense_Mutation p.G418S 0.31 tolerated(1) benign(0.004) TCGA-ND-A4WC-01 16 31926769 31926769 G T ZNF267 Missense_Mutation p.R400I 0.28 tolerated(0.19) possibly_damaging(0.805) TCGA-ND-A4WC-01 16 32077585 32077585 G A IGHV3OR16-9 Missense_Mutation p.R67Q 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.669) TCGA-ND-A4WC-01 16 3454597 3454597 T C ZNF174 Missense_Mutation p.W192R 0.31 tolerated(0.29) benign(0.018) TCGA-ND-A4WC-01 16 3789684 3789684 C T CREBBP Missense_Mutation p.R1392Q 0.30 unknown(0) TCGA-ND-A4WC-01 16 3817823 3817823 C A CREBBP Nonsense_Mutation p.E1050* 0.38 TCGA-ND-A4WC-01 16 46746599 46746599 G T MYLK3 Missense_Mutation p.P692H 0.25 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 16 4707338 4707338 G T MGRN1 Missense_Mutation p.D179Y 0.41 deleterious(0.03) probably_damaging(0.947) TCGA-ND-A4WC-01 16 48121866 48121866 C T ABCC12 Silent p.Q1202Q 0.19 TCGA-ND-A4WC-01 16 48138169 48138169 C A ABCC12 Missense_Mutation p.E928D 0.34 tolerated(0.11) possibly_damaging(0.791) TCGA-ND-A4WC-01 16 48145699 48145699 T C ABCC12 Silent p.G704G 0.27 TCGA-ND-A4WC-01 16 48594765 48594765 G A N4BP1 Nonsense_Mutation p.R597* 0.36 TCGA-ND-A4WC-01 16 4908061 4908061 A C UBN1 Missense_Mutation p.K107T 0.29 deleterious(0.01) possibly_damaging(0.694) TCGA-ND-A4WC-01 16 4910743 4910743 G T UBN1 Missense_Mutation p.K250N 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 16 4910745 4910745 A C UBN1 Missense_Mutation p.K251T 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-ND-A4WC-01 16 50326626 50326626 A C ADCY7 Missense_Mutation p.T193P 0.29 deleterious(0) benign(0.355) TCGA-ND-A4WC-01 16 50384060 50384060 G T BRD7 Missense_Mutation p.F155L 0.17 deleterious(0) probably_damaging(0.926) TCGA-ND-A4WC-01 16 50667564 50667564 C T NKD1 Missense_Mutation p.R429W 0.24 deleterious(0.01) probably_damaging(0.923) TCGA-ND-A4WC-01 16 5115773 5115773 G A C16orf89 Missense_Mutation p.A46V 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-ND-A4WC-01 16 53528122 53528122 A C AKTIP Missense_Mutation p.V213G 0.24 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 16 53682877 53682877 G A RPGRIP1L Missense_Mutation p.S768L 0.13 tolerated(0.82) benign(0.001) TCGA-ND-A4WC-01 16 54319319 54319319 G A IRX3 Silent p.G158G 0.28 TCGA-ND-A4WC-01 16 55733485 55733485 C T SLC6A2 Silent p.N503N 0.32 TCGA-ND-A4WC-01 16 55880315 55880315 G T CES5A 3'UTR 0.37 TCGA-ND-A4WC-01 16 56377721 56377721 C T GNAO1 Silent p.Y308Y 0.33 TCGA-ND-A4WC-01 16 57009049 57009049 G A CETP Missense_Mutation p.E323K 0.42 tolerated(0.65) benign(0.004) TCGA-ND-A4WC-01 16 57113472 57113472 A C NLRC5 Missense_Mutation p.K1751T 0.32 tolerated(0.34) benign(0.179) TCGA-ND-A4WC-01 16 57155661 57155661 C T CPNE2 Nonsense_Mutation p.R286* 0.12 TCGA-ND-A4WC-01 16 57466419 57466419 C T CIAPIN1 Missense_Mutation p.D204N 0.32 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 16 57950065 57950065 G A CNGB1 Nonsense_Mutation p.R729* 0.37 TCGA-ND-A4WC-01 16 58031930 58031930 C G ZNF319 Silent p.V80V 0.37 TCGA-ND-A4WC-01 16 58589167 58589167 C A CNOT1 Missense_Mutation p.R960I 0.45 deleterious(0) probably_damaging(0.979) TCGA-ND-A4WC-01 16 613438 613438 G T C16orf11 Missense_Mutation p.E48D 0.27 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 16 61858924 61858924 A G CDH8 Missense_Mutation p.F276S 0.33 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 16 65016055 65016055 G T CDH11 Missense_Mutation p.F383L 0.44 deleterious(0) benign(0.163) TCGA-ND-A4WC-01 16 66565347 66565347 C T TK2 Missense_Mutation p.R104H 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-ND-A4WC-01 16 67168075 67168075 A G C16orf70 Missense_Mutation p.N152S 0.37 tolerated(0.44) benign(0.012) TCGA-ND-A4WC-01 16 67262716 67262716 A G TMEM208 Missense_Mutation p.I106V 0.33 tolerated(0.14) benign(0.136) TCGA-ND-A4WC-01 16 67329205 67329205 A G KCTD19 Missense_Mutation p.F451S 0.45 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 16 67335823 67335823 T C KCTD19 Missense_Mutation p.N216D 0.24 deleterious(0.01) benign(0.079) TCGA-ND-A4WC-01 16 67338374 67338374 T G KCTD19 Missense_Mutation p.K134T 0.35 deleterious(0.02) benign(0.093) TCGA-ND-A4WC-01 16 67645132 67645132 G T CTCF Nonsense_Mutation p.E133* 0.30 TCGA-ND-A4WC-01 16 67681792 67681792 C T RLTPR Silent p.F334F 0.31 TCGA-ND-A4WC-01 16 67696979 67696979 C T ENKD1 3'UTR 0.41 TCGA-ND-A4WC-01 16 67899124 67899124 G A NUTF2 Missense_Mutation p.A31T 0.32 tolerated(1) benign(0.002) TCGA-ND-A4WC-01 16 67978867 67978867 G T SLC12A4 Intron 0.39 TCGA-ND-A4WC-01 16 67991677 67991677 A G SLC12A4 Missense_Mutation p.M173T 0.39 deleterious(0) possibly_damaging(0.708) TCGA-ND-A4WC-01 16 68598587 68598587 C T ZFP90 Nonsense_Mutation p.R633* 0.43 TCGA-ND-A4WC-01 16 68914501 68914501 G T TANGO6 Nonsense_Mutation p.E449* 0.30 TCGA-ND-A4WC-01 16 70045802 70045802 T C PDXDC2P RNA 0.25 TCGA-ND-A4WC-01 16 70765467 70765467 A G VAC14 Missense_Mutation p.M531T 0.37 deleterious(0) benign(0.316) TCGA-ND-A4WC-01 16 70817355 70817355 G A VAC14 Missense_Mutation p.R233C 0.34 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 16 72184724 72184724 A C PMFBP1 Missense_Mutation p.I140S 0.43 tolerated(0.25) possibly_damaging(0.57) TCGA-ND-A4WC-01 16 72829497 72829497 C T ZFHX3 Missense_Mutation p.D2362N 0.40 probably_damaging(0.956) TCGA-ND-A4WC-01 16 733859 733859 A G JMJD8 Splice_Site p.X96_splice 0.33 TCGA-ND-A4WC-01 16 747067 747067 C A FBXL16 Missense_Mutation p.E113D 0.31 tolerated(0.1) benign(0.217) TCGA-ND-A4WC-01 16 76592493 76592493 G T CNTNAP4 Missense_Mutation p.E1207D 0.37 tolerated(0.06) benign(0.359) TCGA-ND-A4WC-01 16 77227525 77227525 G A MON1B Missense_Mutation p.R109Q 0.31 tolerated(0.19) possibly_damaging(0.898) TCGA-ND-A4WC-01 16 77359844 77359844 G A ADAMTS18 Missense_Mutation p.R651W 0.42 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 16 77775869 77775869 G T NUDT7 3'UTR 0.32 TCGA-ND-A4WC-01 16 79632598 79632598 C T MAF Intron 0.43 TCGA-ND-A4WC-01 16 81077539 81077539 T G ATMIN Missense_Mutation p.F479C 0.38 tolerated(0.07) benign(0.03) TCGA-ND-A4WC-01 16 81193409 81193409 C T PKD1L2 RNA 0.33 TCGA-ND-A4WC-01 16 81224277 81224277 C A PKD1L2 Missense_Mutation p.G83V 0.31 tolerated(0.32) benign(0.23) TCGA-ND-A4WC-01 16 81279168 81279168 C T BCMO1 Silent p.F51F 0.27 TCGA-ND-A4WC-01 16 83816998 83816998 C A CDH13 Silent p.S732S 0.09 TCGA-ND-A4WC-01 16 84163651 84163651 C T HSDL1 Silent p.T202T 0.38 TCGA-ND-A4WC-01 16 84193391 84193391 C T DNAAF1 Missense_Mutation p.P285S 0.38 deleterious(0.01) possibly_damaging(0.848) TCGA-ND-A4WC-01 16 85135934 85135934 C A FAM92B Splice_Site p.X180_splice 0.23 TCGA-ND-A4WC-01 16 855733 855733 G A PRR25 Silent p.A97A 0.30 TCGA-ND-A4WC-01 16 85696959 85696959 T C GSE1 Missense_Mutation p.F795L 0.38 deleterious(0.02) possibly_damaging(0.883) TCGA-ND-A4WC-01 16 85697170 85697170 A C GSE1 Missense_Mutation p.K865T 0.30 deleterious(0.04) possibly_damaging(0.881) TCGA-ND-A4WC-01 16 86544588 86544588 G A FOXF1 Missense_Mutation p.R138Q 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-ND-A4WC-01 16 87454256 87454256 A G ZCCHC14 Missense_Mutation p.F166L 0.18 tolerated(0.38) possibly_damaging(0.764) TCGA-ND-A4WC-01 16 88666313 88666313 C T ZC3H18 Nonsense_Mutation p.R349* 0.37 TCGA-ND-A4WC-01 16 8890295 8890295 C A TMEM186 Missense_Mutation p.E52D 0.35 tolerated(0.16) benign(0.081) TCGA-ND-A4WC-01 16 8987785 8987785 G A USP7 3'UTR 0.38 TCGA-ND-A4WC-01 16 8989562 8989562 A C USP7 Silent p.V952V 0.24 TCGA-ND-A4WC-01 16 90124880 90124880 G T PRDM7 Missense_Mutation p.F432L 0.30 tolerated_low_confidence(0.2) benign(0.004) TCGA-ND-A4WC-01 17 10206514 10206514 G A MYH13 Missense_Mutation p.A1889V 0.35 tolerated(0.06) probably_damaging(0.995) TCGA-ND-A4WC-01 17 10402095 10402095 G T MYH1 Missense_Mutation p.D1343E 0.38 deleterious(0.04) possibly_damaging(0.578) TCGA-ND-A4WC-01 17 10427885 10427885 G A MYH2 Silent p.I1691I 0.31 TCGA-ND-A4WC-01 17 10441078 10441078 G A MYH2 Silent p.F497F 0.33 TCGA-ND-A4WC-01 17 10447242 10447242 C A MYH2 Nonsense_Mutation p.E209* 0.34 TCGA-ND-A4WC-01 17 11573031 11573031 C A DNAH9 Silent p.P1091P 0.13 TCGA-ND-A4WC-01 17 11593429 11593429 G T DNAH9 Missense_Mutation p.E1430D 0.32 probably_damaging(1) TCGA-ND-A4WC-01 17 11881173 11881173 T G ZNF18 3'UTR 0.33 TCGA-ND-A4WC-01 17 11984700 11984700 G A MAP2K4 Silent p.E82E 0.38 TCGA-ND-A4WC-01 17 11998922 11998923 - A MAP2K4 Frame_Shift_Ins p.Q144Tfs*13 0.21 TCGA-ND-A4WC-01 17 13504372 13504372 G T HS3ST3A1 Missense_Mutation p.F25L 0.24 tolerated_low_confidence(0.78) possibly_damaging(0.878) TCGA-ND-A4WC-01 17 15519060 15519060 G A RP11-385D13.1 Missense_Mutation p.A500V 0.13 tolerated_low_confidence(0.12) benign(0.001) TCGA-ND-A4WC-01 17 15620126 15620126 T G ZNF286A Missense_Mutation p.F363C 0.21 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 17 15620411 15620411 G T ZNF286A Missense_Mutation p.R458I 0.43 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 17 16527311 16527311 T C ZNF624 Missense_Mutation p.T297A 0.27 deleterious(0.04) benign(0.012) TCGA-ND-A4WC-01 17 16612833 16612833 G T CCDC144A Nonsense_Mutation p.E488* 0.27 TCGA-ND-A4WC-01 17 16705620 16705620 C A CCDC144A 3'UTR 0.33 TCGA-ND-A4WC-01 17 1703308 1703308 C T SMYD4 Silent p.Q460Q 0.40 TCGA-ND-A4WC-01 17 17179423 17179423 C A COPS3 Missense_Mutation p.K37N 0.28 deleterious(0.01) possibly_damaging(0.87) TCGA-ND-A4WC-01 17 1782331 1782331 C A RPA1 Missense_Mutation p.F245L 0.36 deleterious(0.02) possibly_damaging(0.885) TCGA-ND-A4WC-01 17 17909551 17909551 G A LRRC48 Missense_Mutation p.E396K 0.25 deleterious(0.01) benign(0.256) TCGA-ND-A4WC-01 17 17957474 17957474 G A GID4 Missense_Mutation p.E178K 0.45 deleterious(0) probably_damaging(0.964) TCGA-ND-A4WC-01 17 18284997 18284997 G A EVPLL Missense_Mutation p.R100Q 0.28 tolerated(0.36) benign(0.002) TCGA-ND-A4WC-01 17 1840609 1840609 G A RTN4RL1 Silent p.F169F 0.17 TCGA-ND-A4WC-01 17 18539887 18539887 A C TBC1D28 Missense_Mutation p.L174R 0.11 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 17 18694243 18694243 C T TVP23B Nonsense_Mutation p.R44* 0.28 TCGA-ND-A4WC-01 17 19809424 19809424 A G AKAP10 3'UTR 0.29 TCGA-ND-A4WC-01 17 19999945 19999945 A G SPECC1 Intron 0.33 TCGA-ND-A4WC-01 17 21319491 21319491 G A KCNJ12 Silent p.P279P 0.18 TCGA-ND-A4WC-01 17 2227591 2227591 G A TSR1 Nonsense_Mutation p.R772* 0.37 TCGA-ND-A4WC-01 17 25639387 25639387 C T WSB1 Missense_Mutation p.R420C 0.36 deleterious(0) possibly_damaging(0.745) TCGA-ND-A4WC-01 17 2573541 2573541 G A PAFAH1B1 Missense_Mutation p.G162S 0.27 deleterious(0.02) probably_damaging(1) TCGA-ND-A4WC-01 17 26109077 26109077 C A NOS2 Missense_Mutation p.R229I 0.09 deleterious(0.02) possibly_damaging(0.649) TCGA-ND-A4WC-01 17 26114738 26114738 C T NOS2 Missense_Mutation p.E145K 0.37 deleterious(0.03) possibly_damaging(0.619) TCGA-ND-A4WC-01 17 26696426 26696426 C T VTN Missense_Mutation p.E185K 0.30 tolerated(0.09) possibly_damaging(0.844) TCGA-ND-A4WC-01 17 27041840 27041840 G A RAB34 Missense_Mutation p.S285L 0.29 tolerated(0.13) possibly_damaging(0.574) TCGA-ND-A4WC-01 17 27959445 27959445 G A SSH2 Missense_Mutation p.R896C 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-ND-A4WC-01 17 28003889 28003889 G A SSH2 Missense_Mutation p.S161L 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-ND-A4WC-01 17 28405274 28405274 G A EFCAB5 Missense_Mutation p.E927K 0.28 tolerated(0.05) possibly_damaging(0.831) TCGA-ND-A4WC-01 17 28414099 28414099 C T EFCAB5 Missense_Mutation p.R1200C 0.29 deleterious(0.04) benign(0.187) TCGA-ND-A4WC-01 17 28417440 28417440 G A EFCAB5 Missense_Mutation p.D1229N 0.38 tolerated(0.06) possibly_damaging(0.449) TCGA-ND-A4WC-01 17 28776572 28776572 T G CPD Missense_Mutation p.L959V 0.10 tolerated(0.35) probably_damaging(0.999) TCGA-ND-A4WC-01 17 29162582 29162582 A C ATAD5 Missense_Mutation p.N495H 0.33 deleterious(0.01) possibly_damaging(0.907) TCGA-ND-A4WC-01 17 29220402 29220402 C A ATAD5 Missense_Mutation p.L1511I 0.28 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 17 29253886 29253886 C T ADAP2 Silent p.F89F 0.31 TCGA-ND-A4WC-01 17 29261312 29261312 A G ADAP2 Silent p.E169E 0.29 TCGA-ND-A4WC-01 17 29684049 29684049 C A NF1 Missense_Mutation p.L2604I 0.33 deleterious(0) probably_damaging(0.952) TCGA-ND-A4WC-01 17 32904526 32904526 C T C17orf102 3'UTR 0.41 TCGA-ND-A4WC-01 17 33269503 33269503 C A CCT6B Missense_Mutation p.K295N 0.43 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 17 33679887 33679887 G A SLFN11 Missense_Mutation p.R732C 0.32 deleterious(0.01) benign(0.366) TCGA-ND-A4WC-01 17 33690361 33690361 T G SLFN11 Silent p.R156R 0.35 TCGA-ND-A4WC-01 17 33772094 33772094 T G SLFN13 Missense_Mutation p.E202D 0.10 deleterious(0.05) benign(0.02) TCGA-ND-A4WC-01 17 34163181 34163181 G T TAF15 Missense_Mutation p.G240V 0.42 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ND-A4WC-01 17 34182689 34182689 G A C17orf66 Silent p.N448N 0.30 TCGA-ND-A4WC-01 17 34266445 34266445 G A LYZL6 5'UTR 0.24 TCGA-ND-A4WC-01 17 34587319 34587319 C T TBC1D3C Missense_Mutation p.D146N 0.11 tolerated(0.07) benign(0.044) TCGA-ND-A4WC-01 17 34854398 34854398 T C MYO19 Silent p.R823R 0.41 TCGA-ND-A4WC-01 17 34958728 34958728 G C MRM1 Silent p.L163L 0.39 TCGA-ND-A4WC-01 17 36482602 36482602 C A GPR179 Missense_Mutation p.D2284Y 0.37 deleterious_low_confidence(0.04) benign(0.231) TCGA-ND-A4WC-01 17 36933975 36933975 T G PIP4K2B Missense_Mutation p.K258Q 0.35 tolerated(0.22) benign(0.217) TCGA-ND-A4WC-01 17 36991415 36991415 C T C17orf98 3'UTR 0.33 TCGA-ND-A4WC-01 17 37564014 37564014 C T MED1 Missense_Mutation p.R1487Q 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-ND-A4WC-01 17 3773125 3773125 G A CAMKK1 Silent p.P432P 0.23 TCGA-ND-A4WC-01 17 37814703 37814703 T G STARD3 Missense_Mutation p.F159V 0.36 deleterious(0) possibly_damaging(0.895) TCGA-ND-A4WC-01 17 38421170 38421170 C T WIPF2 Silent p.L248L 0.06 TCGA-ND-A4WC-01 17 38458221 38458221 A C CDC6 Missense_Mutation p.I551L 0.30 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 17 38612896 38612896 G T IGFBP4 3'UTR 0.22 TCGA-ND-A4WC-01 17 38859658 38859658 G T KRT24 Silent p.V96V 0.33 TCGA-ND-A4WC-01 17 39197617 39197617 A C KRTAP1-1 Missense_Mutation p.F11L 0.27 tolerated(0.66) benign(0.009) TCGA-ND-A4WC-01 17 39406152 39406152 C T KRTAP9-4 Silent p.T60T 0.32 TCGA-ND-A4WC-01 17 39521451 39521451 G A KRT33B Silent p.I284I 0.34 TCGA-ND-A4WC-01 17 39567588 39567588 G A AC003958.2 RNA 0.28 TCGA-ND-A4WC-01 17 39580138 39580138 C T KRT37 Intron 0.33 TCGA-ND-A4WC-01 17 39681143 39681143 G A KRT19 Silent p.I204I 0.39 TCGA-ND-A4WC-01 17 3974124 3974124 A C ZZEF1 Missense_Mutation p.L1310R 0.30 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 17 39872190 39872190 A C GAST 3'UTR 0.36 TCGA-ND-A4WC-01 17 39978543 39978543 G T FKBP10 Missense_Mutation p.E544D 0.25 tolerated(0.52) benign(0.003) TCGA-ND-A4WC-01 17 40063734 40063734 G A ACLY Silent p.I236I 0.35 TCGA-ND-A4WC-01 17 40275349 40275349 A T HSPB9 3'UTR 0.37 TCGA-ND-A4WC-01 17 40947053 40947053 T C WNK4 Missense_Mutation p.F872L 0.40 tolerated(0.15) unknown(0) TCGA-ND-A4WC-01 17 40956314 40956314 C A CNTD1 Missense_Mutation p.S106Y 0.30 deleterious(0.03) benign(0.019) TCGA-ND-A4WC-01 17 42030313 42030313 C T PYY 3'UTR 0.45 TCGA-ND-A4WC-01 17 4210374 4210374 C T UBE2G1 Missense_Mutation p.D31N 0.44 tolerated(0.19) benign(0.034) TCGA-ND-A4WC-01 17 42152412 42152412 C A G6PC3 Silent p.I164I 0.30 TCGA-ND-A4WC-01 17 42255579 42255579 G A ASB16 Missense_Mutation p.E395K 0.19 tolerated(0.72) benign(0.002) TCGA-ND-A4WC-01 17 42268132 42268132 G A TMUB2 Missense_Mutation p.R289Q 0.29 tolerated(0.27) probably_damaging(0.999) TCGA-ND-A4WC-01 17 42392102 42392102 G T RUNDC3A Splice_Site p.X153_splice 0.45 TCGA-ND-A4WC-01 17 42466810 42466810 A G ITGA2B Missense_Mutation p.L11P 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.67) TCGA-ND-A4WC-01 17 42882757 42882757 C A GJC1 Missense_Mutation p.E143D 0.07 tolerated(0.35) probably_damaging(0.935) TCGA-ND-A4WC-01 17 43906647 43906647 G A CRHR1 Missense_Mutation p.V132M 0.14 tolerated(0.14) benign(0.04) TCGA-ND-A4WC-01 17 44127980 44127980 C T KANSL1 Missense_Mutation p.E647K 0.40 deleterious(0.02) benign(0.284) TCGA-ND-A4WC-01 17 45258949 45258949 C T CDC27 Missense_Mutation p.A28T 0.28 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 17 45425210 45425210 G A EFCAB13 Missense_Mutation p.R185Q 0.47 tolerated(0.17) benign(0.127) TCGA-ND-A4WC-01 17 45452066 45452066 T G EFCAB13 Missense_Mutation p.F369C 0.33 deleterious(0.01) probably_damaging(0.94) TCGA-ND-A4WC-01 17 45455157 45455157 A C EFCAB13 Missense_Mutation p.K466N 0.32 deleterious(0) possibly_damaging(0.798) TCGA-ND-A4WC-01 17 4576196 4576196 G A PELP1 Missense_Mutation p.S697L 0.41 benign(0.32) TCGA-ND-A4WC-01 17 45901508 45901508 T C MRPL10 3'UTR 0.31 TCGA-ND-A4WC-01 17 46022057 46022057 C T PNPO Silent p.F113F 0.36 TCGA-ND-A4WC-01 17 465979 465979 G A VPS53 Silent p.L440L 0.39 TCGA-ND-A4WC-01 17 46933497 46933497 T G CALCOCO2 Missense_Mutation p.I343S 0.36 tolerated(0.4) benign(0.063) TCGA-ND-A4WC-01 17 47075230 47075230 C A IGF2BP1 Missense_Mutation p.F41L 0.12 deleterious(0) possibly_damaging(0.786) TCGA-ND-A4WC-01 17 47394794 47394794 C A ZNF652 Missense_Mutation p.E98D 0.41 tolerated(0.22) possibly_damaging(0.584) TCGA-ND-A4WC-01 17 48068973 48068973 T C DLX3 Missense_Mutation p.S258G 0.39 tolerated(0.33) benign(0.011) TCGA-ND-A4WC-01 17 48606124 48606124 G T MYCBPAP Nonsense_Mutation p.G869* 0.36 TCGA-ND-A4WC-01 17 48625670 48625670 G A SPATA20 Missense_Mutation p.R51Q 0.36 deleterious_low_confidence(0.03) benign(0.417) TCGA-ND-A4WC-01 17 4873207 4873207 C T CAMTA2 Missense_Mutation p.R1083Q 0.39 deleterious(0) possibly_damaging(0.597) TCGA-ND-A4WC-01 17 49731017 49731017 A C CA10 Silent p.V182V 0.44 TCGA-ND-A4WC-01 17 4996205 4996205 G T ZFP3 Missense_Mutation p.R469I 0.27 deleterious(0) possibly_damaging(0.88) TCGA-ND-A4WC-01 17 5064861 5064861 G A USP6 Missense_Mutation p.R956Q 0.31 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 17 5085278 5085278 C A ZNF594 Missense_Mutation p.K758N 0.30 deleterious(0.01) benign(0.005) TCGA-ND-A4WC-01 17 5392583 5392583 C A MIS12 Missense_Mutation p.T134N 0.09 deleterious(0) possibly_damaging(0.66) TCGA-ND-A4WC-01 17 54978869 54978869 A G TRIM25 Missense_Mutation p.L333P 0.29 deleterious(0) benign(0.111) TCGA-ND-A4WC-01 17 55478757 55478757 G T MSI2 Missense_Mutation p.K110N 0.35 deleterious(0) probably_damaging(0.973) TCGA-ND-A4WC-01 17 56084470 56084470 G A SRSF1 Missense_Mutation p.P10L 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.814) TCGA-ND-A4WC-01 17 56499668 56499668 T C HSF5 3'UTR 0.66 TCGA-ND-A4WC-01 17 56568929 56568929 G T MTMR4 3'UTR 0.46 TCGA-ND-A4WC-01 17 56598957 56598957 G T SEPT4 Missense_Mutation p.D337E 0.31 tolerated(0.78) benign(0.016) TCGA-ND-A4WC-01 17 56604289 56604289 G A SEPT4 Silent p.F52F 0.37 TCGA-ND-A4WC-01 17 56620179 56620179 G T C17orf47 Missense_Mutation p.L457I 0.34 tolerated(0.3) benign(0.006) TCGA-ND-A4WC-01 17 56682459 56682459 G A TEX14 Nonsense_Mutation p.R412* 0.35 TCGA-ND-A4WC-01 17 57106003 57106003 C A TRIM37 Missense_Mutation p.R677I 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ND-A4WC-01 17 57196697 57196697 T C SKA2 Missense_Mutation p.K94E 0.30 tolerated(0.13) possibly_damaging(0.851) TCGA-ND-A4WC-01 17 57288858 57288858 T C SMG8 Silent p.I482I 0.36 TCGA-ND-A4WC-01 17 57724861 57724861 C T CLTC Missense_Mutation p.T118M 0.10 tolerated(0.2) possibly_damaging(0.897) TCGA-ND-A4WC-01 17 57771337 57771337 C A CLTC 3'UTR 0.33 TCGA-ND-A4WC-01 17 57958404 57958404 A C TUBD1 Missense_Mutation p.C130G 0.38 deleterious(0) probably_damaging(0.986) TCGA-ND-A4WC-01 17 58136792 58136792 G A HEATR6 Missense_Mutation p.R572C 0.32 tolerated(0.16) benign(0.01) TCGA-ND-A4WC-01 17 58137338 58137338 G A HEATR6 Silent p.I512I 0.34 TCGA-ND-A4WC-01 17 58137400 58137400 G T HEATR6 Missense_Mutation p.L492I 0.14 deleterious(0) probably_damaging(0.957) TCGA-ND-A4WC-01 17 58153597 58153597 T C HEATR6 Missense_Mutation p.D74G 0.23 deleterious(0) benign(0) TCGA-ND-A4WC-01 17 58512722 58512722 C T C17orf64 3'Flank 0.50 TCGA-ND-A4WC-01 17 58525055 58525055 G A APPBP2 Missense_Mutation p.R549W 0.30 deleterious(0.01) possibly_damaging(0.798) TCGA-ND-A4WC-01 17 58824611 58824611 C T BCAS3 Missense_Mutation p.A125V 0.35 tolerated(0.66) benign(0.005) TCGA-ND-A4WC-01 17 59469632 59469632 T C BCAS3 3'UTR 0.36 TCGA-ND-A4WC-01 17 59485502 59485502 G A TBX2 Missense_Mutation p.A592T 0.38 tolerated(0.5) benign(0.006) TCGA-ND-A4WC-01 17 59560407 59560407 G T TBX4 Nonsense_Mutation p.E390* 0.34 TCGA-ND-A4WC-01 17 59760516 59760516 G T BRIP1 3'UTR 0.44 TCGA-ND-A4WC-01 17 59886056 59886056 C T BRIP1 Silent p.S230S 0.35 TCGA-ND-A4WC-01 17 60040120 60040120 G A MED13 Missense_Mutation p.S1686F 0.29 tolerated(0.68) probably_damaging(0.993) TCGA-ND-A4WC-01 17 60631070 60631070 A C TLK2 Missense_Mutation p.N225T 0.11 tolerated(0.1) benign(0.025) TCGA-ND-A4WC-01 17 61497761 61497761 C A TANC2 Missense_Mutation p.S1473Y 0.37 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-ND-A4WC-01 17 61555323 61555323 C T ACE Missense_Mutation p.A94V 0.36 tolerated(0.1) benign(0.004) TCGA-ND-A4WC-01 17 61571794 61571794 G T ACE Missense_Mutation p.A1115S 0.31 tolerated(0.18) possibly_damaging(0.544) TCGA-ND-A4WC-01 17 61601590 61601590 G A KCNH6 Missense_Mutation p.R56Q 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 17 62021173 62021173 T G SCN4A Missense_Mutation p.K1317T 0.30 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 17 62034759 62034759 G A SCN4A Silent p.I713I 0.30 TCGA-ND-A4WC-01 17 62518818 62518818 A C CEP95 Splice_Site p.X239_splice 0.36 TCGA-ND-A4WC-01 17 62530763 62530763 C T CEP95 Nonsense_Mutation p.R660* 0.11 TCGA-ND-A4WC-01 17 62781380 62781380 G A hsa-mir-6080 5'Flank 0.27 TCGA-ND-A4WC-01 17 6358759 6358759 C T PITPNM3 Missense_Mutation p.E942K 0.33 deleterious(0) possibly_damaging(0.666) TCGA-ND-A4WC-01 17 64001835 64001835 T C CEP112 Missense_Mutation p.K570R 0.35 tolerated(0.07) benign(0.027) TCGA-ND-A4WC-01 17 6493188 6493188 G A KIAA0753 Silent p.I899I 0.32 TCGA-ND-A4WC-01 17 65722653 65722653 T A NOL11 Missense_Mutation p.S248T 0.30 tolerated(0.11) benign(0.043) TCGA-ND-A4WC-01 17 66887695 66887695 A G ABCA8 Missense_Mutation p.F987L 0.24 tolerated(0.14) benign(0.06) TCGA-ND-A4WC-01 17 6690193 6690193 T G FBXO39 Missense_Mutation p.I373S 0.38 deleterious(0) benign(0.355) TCGA-ND-A4WC-01 17 66903902 66903902 C A ABCA8 Nonsense_Mutation p.E713* 0.40 TCGA-ND-A4WC-01 17 67111054 67111054 T C ABCA6 Missense_Mutation p.N544S 0.32 tolerated(0.14) benign(0.117) TCGA-ND-A4WC-01 17 67270154 67270154 G T ABCA5 Missense_Mutation p.P904T 0.28 tolerated(0.51) benign(0.039) TCGA-ND-A4WC-01 17 67302906 67302906 C A ABCA5 Nonsense_Mutation p.E250* 0.28 TCGA-ND-A4WC-01 17 673156 673156 G A GLOD4 Nonsense_Mutation p.R262* 0.35 TCGA-ND-A4WC-01 17 7106763 7106763 T G DLG4 Missense_Mutation p.K205T 0.36 deleterious(0.03) probably_damaging(1) TCGA-ND-A4WC-01 17 71334925 71334925 G A SDK2 Missense_Mutation p.S2107L 0.42 tolerated(0.1) benign(0.116) TCGA-ND-A4WC-01 17 71390374 71390374 G A SDK2 Missense_Mutation p.R1228C 0.33 tolerated(0.12) benign(0.044) TCGA-ND-A4WC-01 17 7186949 7186949 C A SLC2A4 Missense_Mutation p.S103Y 0.30 tolerated(0.14) probably_damaging(0.961) TCGA-ND-A4WC-01 17 7192940 7192940 C T YBX2 Missense_Mutation p.R318H 0.31 deleterious(0) possibly_damaging(0.522) TCGA-ND-A4WC-01 17 7219540 7219540 C A NEURL4 Nonsense_Mutation p.E1531* 0.27 TCGA-ND-A4WC-01 17 72350678 72350678 T G KIF19 Missense_Mutation p.F896V 0.50 deleterious(0.01) possibly_damaging(0.698) TCGA-ND-A4WC-01 17 72527608 72527608 G A CD300LB 5'Flank 0.26 TCGA-ND-A4WC-01 17 72539095 72539095 G A CD300C Silent p.S144S 0.41 TCGA-ND-A4WC-01 17 7293749 7293749 G T TMEM256-PLSCR3 Missense_Mutation p.F281L 0.32 deleterious(0.02) benign(0.133) TCGA-ND-A4WC-01 17 73234235 73234235 G A GGA3 3'UTR 0.45 TCGA-ND-A4WC-01 17 7404318 7404318 G A POLR2A Silent p.T647T 0.32 TCGA-ND-A4WC-01 17 7474849 7474849 G A SENP3 3'UTR 0.40 TCGA-ND-A4WC-01 17 75398271 75398271 G T SEPT9 Missense_Mutation p.K69N 0.38 tolerated_low_confidence(0.11) probably_damaging(0.959) TCGA-ND-A4WC-01 17 7557947 7557947 T C ATP1B2 Missense_Mutation p.V185A 0.11 deleterious(0) possibly_damaging(0.549) TCGA-ND-A4WC-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.37 TCGA-ND-A4WC-01 17 7578389 7578389 G A TP53 Missense_Mutation p.R181C 0.26 tolerated(0.14) benign(0.381) TCGA-ND-A4WC-01 17 7606440 7606440 C T WRAP53 Silent p.G466G 0.22 TCGA-ND-A4WC-01 17 76503679 76503679 G A DNAH17 Missense_Mutation p.A1478V 0.45 benign(0.014) TCGA-ND-A4WC-01 17 7678128 7678128 A C DNAH2 Missense_Mutation p.K1518T 0.50 probably_damaging(0.925) TCGA-ND-A4WC-01 17 7678157 7678157 C T DNAH2 Nonsense_Mutation p.R1528* 0.09 TCGA-ND-A4WC-01 17 76799474 76799474 G A USP36 Missense_Mutation p.R935W 0.27 tolerated(0.13) benign(0) TCGA-ND-A4WC-01 17 77073826 77073826 G A ENGASE Missense_Mutation p.R99H 0.37 tolerated(0.21) benign(0) TCGA-ND-A4WC-01 17 7707670 7707670 G T DNAH2 Silent p.V3023V 0.26 TCGA-ND-A4WC-01 17 7733753 7733753 A C DNAH2 Missense_Mutation p.K3997Q 0.33 probably_damaging(1) TCGA-ND-A4WC-01 17 7735091 7735091 A C DNAH2 Missense_Mutation p.K4242Q 0.30 benign(0.097) TCGA-ND-A4WC-01 17 78078718 78078718 C T GAA Silent p.I111I 0.38 TCGA-ND-A4WC-01 17 78353468 78353468 A C RNF213 Missense_Mutation p.I4532L 0.31 benign(0.338) TCGA-ND-A4WC-01 17 80049219 80049219 G A FASN Silent p.I457I 0.27 TCGA-ND-A4WC-01 17 80377718 80377718 G A HEXDC Missense_Mutation p.D15N 0.17 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 17 80617462 80617462 G A RAB40B Silent p.I112I 0.30 TCGA-ND-A4WC-01 17 8508286 8508286 G T MYH10 Silent p.L120L 0.30 TCGA-ND-A4WC-01 18 10671631 10671631 G A PIEZO2 Nonsense_Mutation p.R2718* 0.35 TCGA-ND-A4WC-01 18 12512515 12512515 G T SPIRE1 Missense_Mutation p.Q249K 0.28 tolerated(0.51) possibly_damaging(0.882) TCGA-ND-A4WC-01 18 13059163 13059163 T C CEP192 Missense_Mutation p.L1447P 0.34 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 18 19144267 19144267 C T ESCO1 Missense_Mutation p.R573Q 0.28 tolerated(0.31) benign(0) TCGA-ND-A4WC-01 18 21136259 21136259 G A NPC1 Missense_Mutation p.S425L 0.29 tolerated(0.06) benign(0.409) TCGA-ND-A4WC-01 18 21330920 21330920 A C LAMA3 Missense_Mutation p.K241N 0.42 benign(0.159) TCGA-ND-A4WC-01 18 21399891 21399891 G A LAMA3 Missense_Mutation p.R745Q 0.32 probably_damaging(0.998) TCGA-ND-A4WC-01 18 21644103 21644103 G T TTC39C Splice_Site p.X56_splice 0.44 TCGA-ND-A4WC-01 18 21736538 21736538 A C CABYR Intron 0.29 TCGA-ND-A4WC-01 18 21819302 21819302 G T OSBPL1A Silent p.I442I 0.38 TCGA-ND-A4WC-01 18 22028085 22028085 T G IMPACT Missense_Mutation p.L233V 0.08 deleterious(0.01) benign(0.3) TCGA-ND-A4WC-01 18 23598310 23598310 G T SS18 3'UTR 0.18 TCGA-ND-A4WC-01 18 23895323 23895323 C A TAF4B Missense_Mutation p.L655I 0.29 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 18 24496352 24496352 G A CHST9 Silent p.S401S 0.29 TCGA-ND-A4WC-01 18 2656067 2656067 T C SMCHD1 5'UTR 0.38 TCGA-ND-A4WC-01 18 2778221 2778221 A C SMCHD1 Missense_Mutation p.N1844T 0.44 tolerated(0.26) probably_damaging(1) TCGA-ND-A4WC-01 18 28574328 28574328 C T DSC3 Missense_Mutation p.R835Q 0.36 tolerated(0.06) benign(0.002) TCGA-ND-A4WC-01 18 28671063 28671063 C T DSC2 Silent p.K134K 0.28 TCGA-ND-A4WC-01 18 28712594 28712594 T C DSC1 Silent p.P725P 0.28 TCGA-ND-A4WC-01 18 28712606 28712606 C A DSC1 Missense_Mutation p.K721N 0.27 tolerated(0.11) probably_damaging(0.932) TCGA-ND-A4WC-01 18 28720011 28720011 C A DSC1 Missense_Mutation p.G505V 0.28 deleterious(0) probably_damaging(0.993) TCGA-ND-A4WC-01 18 2890578 2890578 C A EMILIN2 Missense_Mutation p.F151L 0.28 tolerated(0.38) benign(0) TCGA-ND-A4WC-01 18 28968937 28968937 C T DSG4 Missense_Mutation p.S158L 0.33 deleterious(0) benign(0.176) TCGA-ND-A4WC-01 18 28979455 28979455 G A DSG4 Missense_Mutation p.G409D 0.36 deleterious(0) probably_damaging(0.974) TCGA-ND-A4WC-01 18 29487555 29487555 T G TRAPPC8 Silent p.P419P 0.56 TCGA-ND-A4WC-01 18 29648360 29648360 G A RNF125 3'UTR 0.38 TCGA-ND-A4WC-01 18 29772619 29772619 C T MEP1B Silent p.G31G 0.34 TCGA-ND-A4WC-01 18 29797891 29797891 G T MEP1B Missense_Mutation p.R685M 0.46 deleterious_low_confidence(0.01) benign(0.438) TCGA-ND-A4WC-01 18 30093424 30093424 A G WBP11P1 RNA 0.34 TCGA-ND-A4WC-01 18 30350502 30350502 T C KLHL14 Missense_Mutation p.N18S 0.39 tolerated(0.92) benign(0.003) TCGA-ND-A4WC-01 18 31326632 31326632 T G ASXL3 3'UTR 0.42 TCGA-ND-A4WC-01 18 3151809 3151809 C T MYOM1 Missense_Mutation p.E576K 0.34 tolerated(0.06) probably_damaging(1) TCGA-ND-A4WC-01 18 32407596 32407596 C A DTNA Missense_Mutation p.F347L 0.38 tolerated(0.86) benign(0.001) TCGA-ND-A4WC-01 18 32459636 32459636 T C DTNA Silent p.P618P 0.38 TCGA-ND-A4WC-01 18 32822391 32822391 G T ZNF397 5'UTR 0.37 TCGA-ND-A4WC-01 18 32844236 32844236 T A ZSCAN30 Missense_Mutation p.E27D 0.42 tolerated(0.4) benign(0.265) TCGA-ND-A4WC-01 18 32886813 32886813 C A ZNF271 RNA 0.39 TCGA-ND-A4WC-01 18 34298177 34298177 G A FHOD3 Silent p.P797P 0.35 TCGA-ND-A4WC-01 18 34376644 34376644 A C TPGS2 3'UTR 0.31 TCGA-ND-A4WC-01 18 3451934 3451934 T C TGIF1 5'UTR 0.25 TCGA-ND-A4WC-01 18 39567792 39567792 G A PIK3C3 Missense_Mutation p.R183Q 0.27 tolerated(0.08) probably_damaging(0.952) TCGA-ND-A4WC-01 18 39617746 39617746 G T PIK3C3 Missense_Mutation p.D644Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 18 40851677 40851677 C A SYT4 Missense_Mutation p.D324Y 0.31 deleterious(0) probably_damaging(0.978) TCGA-ND-A4WC-01 18 43523145 43523145 C T EPG5 Missense_Mutation p.R642Q 0.33 deleterious(0) probably_damaging(0.947) TCGA-ND-A4WC-01 18 44579309 44579309 G T KATNAL2 5'UTR 0.32 TCGA-ND-A4WC-01 18 46570519 46570519 A C DYM Missense_Mutation p.F639C 0.34 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 18 47404165 47404165 C T MYO5B Missense_Mutation p.G1122R 0.39 deleterious(0.04) probably_damaging(0.951) TCGA-ND-A4WC-01 18 47809356 47809356 G A CXXC1 Silent p.C568C 0.33 TCGA-ND-A4WC-01 18 48252489 48252489 C T MAPK4 Silent p.I337I 0.34 TCGA-ND-A4WC-01 18 48446854 48446854 G A ME2 Missense_Mutation p.E255K 0.25 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 18 49867163 49867163 G T DCC Missense_Mutation p.E2D 0.29 deleterious_low_confidence(0) benign(0.135) TCGA-ND-A4WC-01 18 50278454 50278454 G A DCC Missense_Mutation p.R41H 0.43 tolerated(0.4) benign(0.003) TCGA-ND-A4WC-01 18 50432692 50432692 T G DCC Missense_Mutation p.L231V 0.43 tolerated(0.21) benign(0.083) TCGA-ND-A4WC-01 18 50450145 50450145 G T DCC Missense_Mutation p.D256Y 0.44 deleterious(0.01) possibly_damaging(0.89) TCGA-ND-A4WC-01 18 50731697 50731697 G T DCC Missense_Mutation p.R562I 0.39 deleterious(0.02) possibly_damaging(0.543) TCGA-ND-A4WC-01 18 50923743 50923743 C A DCC Missense_Mutation p.F918L 0.29 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 18 51053053 51053053 C A DCC Missense_Mutation p.P1393H 0.37 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 18 51898953 51898953 G T C18orf54 Nonsense_Mutation p.E321* 0.30 TCGA-ND-A4WC-01 18 55021708 55021708 G T ST8SIA3 Missense_Mutation p.E85D 0.39 benign(0) TCGA-ND-A4WC-01 18 55338749 55338749 C T ATP8B1 Missense_Mutation p.R628Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 18 56184404 56184404 C T ALPK2 Silent p.E1892E 0.19 TCGA-ND-A4WC-01 18 57363940 57363940 C A CCBE1 Nonsense_Mutation p.E45* 0.31 TCGA-ND-A4WC-01 18 57569889 57569889 C T PMAIP1 Silent p.V23V 0.37 TCGA-ND-A4WC-01 18 57569963 57569963 A C PMAIP1 Missense_Mutation p.K48T 0.38 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 18 580627 580627 C A CETN1 Silent p.I73I 0.36 TCGA-ND-A4WC-01 18 60025530 60025530 C A TNFRSF11A Missense_Mutation p.F159L 0.42 deleterious(0) probably_damaging(0.957) TCGA-ND-A4WC-01 18 60646231 60646231 C T PHLPP1 Missense_Mutation p.A1574V 0.33 tolerated(0.1) benign(0.284) TCGA-ND-A4WC-01 18 61002592 61002592 C T KDSR Splice_Site p.X260_splice 0.40 TCGA-ND-A4WC-01 18 61166405 61166405 G A SERPINB5 Missense_Mutation p.G207E 0.42 tolerated(0.29) probably_damaging(0.979) TCGA-ND-A4WC-01 18 64212074 64212074 T G CDH19 Missense_Mutation p.Y281S 0.33 tolerated(0.72) benign(0.044) TCGA-ND-A4WC-01 18 65178668 65178668 T G DSEL Missense_Mutation p.K1070Q 0.26 tolerated(0.58) benign(0.117) TCGA-ND-A4WC-01 18 65178964 65178964 A C DSEL Missense_Mutation p.F971C 0.29 tolerated(0.18) benign(0.296) TCGA-ND-A4WC-01 18 65180565 65180565 T C DSEL Silent p.T437T 0.29 TCGA-ND-A4WC-01 18 66365258 66365258 G A TMX3 Missense_Mutation p.R135W 0.36 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 18 66505962 66505962 A C CCDC102B Missense_Mutation p.D209A 0.25 deleterious(0.01) probably_damaging(0.933) TCGA-ND-A4WC-01 18 66721328 66721328 G T CCDC102B Missense_Mutation p.R499I 0.34 tolerated(0.56) benign(0.001) TCGA-ND-A4WC-01 18 70526222 70526222 A G NETO1 Missense_Mutation p.V103A 0.44 deleterious(0) probably_damaging(0.916) TCGA-ND-A4WC-01 18 72247405 72247405 A C CNDP1 Missense_Mutation p.S403R 0.42 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 18 72344194 72344194 G A ZNF407 Missense_Mutation p.G407S 0.29 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 18 736808 736808 C T YES1 Missense_Mutation p.G431S 0.15 deleterious(0) possibly_damaging(0.793) TCGA-ND-A4WC-01 18 74980781 74980781 G T GALR1 Missense_Mutation p.D325Y 0.11 deleterious(0.01) benign(0.01) TCGA-ND-A4WC-01 18 76754412 76754412 C T SALL3 Silent p.D807D 0.38 TCGA-ND-A4WC-01 18 76953202 76953202 C T ATP9B Missense_Mutation p.A298V 0.12 tolerated(0.06) benign(0.366) TCGA-ND-A4WC-01 18 77797377 77797377 G T RBFA Missense_Mutation p.K83N 0.32 tolerated(0.09) benign(0.424) TCGA-ND-A4WC-01 18 77805878 77805878 A G RBFA Missense_Mutation p.K252R 0.45 deleterious(0.02) possibly_damaging(0.542) TCGA-ND-A4WC-01 18 8143718 8143718 C T PTPRM Silent p.I747I 0.36 TCGA-ND-A4WC-01 18 8406109 8406109 T G PTPRM Missense_Mutation p.D1449E 0.30 tolerated(1) benign(0.003) TCGA-ND-A4WC-01 18 9134277 9134277 A C NDUFV2 Nonstop_Mutation p.*250Yext*? 0.33 TCGA-ND-A4WC-01 18 9886169 9886169 G A TXNDC2 5'UTR 0.30 TCGA-ND-A4WC-01 19 10079070 10079070 C A COL5A3 Missense_Mutation p.K1435N 0.37 unknown(0) TCGA-ND-A4WC-01 19 1012473 1012473 A C TMEM259 Missense_Mutation p.V236G 0.27 deleterious(0) probably_damaging(0.954) TCGA-ND-A4WC-01 19 10169496 10169496 C T C3P1 RNA 0.31 TCGA-ND-A4WC-01 19 10398049 10398049 A G ICAM4 Missense_Mutation p.T121A 0.58 deleterious_low_confidence(0.02) possibly_damaging(0.848) TCGA-ND-A4WC-01 19 1042699 1042699 A G ABCA7 Intron 0.16 TCGA-ND-A4WC-01 19 10793809 10793809 A C ILF3 Missense_Mutation p.K519N 0.37 deleterious(0.02) benign(0.275) TCGA-ND-A4WC-01 19 10794354 10794354 G A ILF3 Missense_Mutation p.E636K 0.37 tolerated_low_confidence(0.24) benign(0.176) TCGA-ND-A4WC-01 19 11114067 11114067 G T SMARCA4 Missense_Mutation p.E665D 0.17 benign(0.047) TCGA-ND-A4WC-01 19 11473304 11473304 G A DKFZP761J1410 Missense_Mutation p.R235Q 0.41 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 19 1147372 1147372 T C SBNO2 Missense_Mutation p.D72G 0.45 tolerated_low_confidence(0.07) benign(0.26) TCGA-ND-A4WC-01 19 11978295 11978295 G T ZNF439 Missense_Mutation p.M137I 0.33 tolerated(0.11) benign(0.006) TCGA-ND-A4WC-01 19 12059468 12059468 G A ZNF700 Missense_Mutation p.R210Q 0.32 tolerated(1) benign(0.019) TCGA-ND-A4WC-01 19 12127029 12127029 C T ZNF433 Missense_Mutation p.R218Q 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-ND-A4WC-01 19 12243602 12243602 G A ZNF20 Nonsense_Mutation p.R467* 0.23 TCGA-ND-A4WC-01 19 12243874 12243874 A C ZNF20 Missense_Mutation p.F376C 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-ND-A4WC-01 19 12244261 12244261 C A ZNF20 Missense_Mutation p.R247I 0.32 tolerated(0.08) benign(0.177) TCGA-ND-A4WC-01 19 12256655 12256655 T G ZNF625 Missense_Mutation p.K192N 0.39 deleterious(0.01) probably_damaging(0.981) TCGA-ND-A4WC-01 19 12298485 12298485 C A ZNF136 Missense_Mutation p.S431Y 0.11 tolerated(1) probably_damaging(0.965) TCGA-ND-A4WC-01 19 12541287 12541287 T G ZNF443 Missense_Mutation p.K567Q 0.19 deleterious(0.03) probably_damaging(0.948) TCGA-ND-A4WC-01 19 12542031 12542031 T G ZNF443 Missense_Mutation p.S319R 0.37 tolerated(0.48) benign(0.282) TCGA-ND-A4WC-01 19 12575681 12575681 C T ZNF709 Missense_Mutation p.R352Q 0.46 tolerated(0.9) probably_damaging(0.99) TCGA-ND-A4WC-01 19 12576017 12576017 C T ZNF709 Missense_Mutation p.R240Q 0.38 tolerated(0.65) probably_damaging(0.99) TCGA-ND-A4WC-01 19 12638272 12638272 C A ZNF564 Missense_Mutation p.R217I 0.35 tolerated(0.15) possibly_damaging(0.856) TCGA-ND-A4WC-01 19 12739611 12739611 C A ZNF791 Missense_Mutation p.S423Y 0.35 tolerated(1) probably_damaging(0.999) TCGA-ND-A4WC-01 19 12786607 12786607 T G DHPS 3'UTR 0.32 TCGA-ND-A4WC-01 19 12825950 12825950 C T TNPO2 Missense_Mutation p.E228K 0.39 tolerated(0.09) benign(0.136) TCGA-ND-A4WC-01 19 12958187 12958187 C T MAST1 Silent p.F137F 0.36 TCGA-ND-A4WC-01 19 12981886 12981886 G A MAST1 Missense_Mutation p.E1055K 0.11 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 19 13015378 13015378 G A SYCE2 Silent p.I78I 0.35 TCGA-ND-A4WC-01 19 13211649 13211649 A G LYL1 Splice_Site p.X112_splice 0.53 TCGA-ND-A4WC-01 19 13249228 13249228 A C NACC1 3'UTR 0.42 TCGA-ND-A4WC-01 19 13482541 13482541 G A CACNA1A Nonsense_Mutation p.R198* 0.27 TCGA-ND-A4WC-01 19 1453536 1453536 C T APC2 Silent p.S113S 0.27 TCGA-ND-A4WC-01 19 14705455 14705455 G T CLEC17A Nonsense_Mutation p.E108* 0.27 TCGA-ND-A4WC-01 19 14910876 14910876 A G OR7C1 Missense_Mutation p.F25L 0.32 tolerated_low_confidence(0.09) benign(0.001) TCGA-ND-A4WC-01 19 14952650 14952650 G T OR7A10 Missense_Mutation p.L14I 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.452) TCGA-ND-A4WC-01 19 15052725 15052725 G A OR7C2 Missense_Mutation p.G142E 0.38 deleterious_low_confidence(0.03) benign(0.033) TCGA-ND-A4WC-01 19 15739598 15739598 G A CYP4F8 RNA 0.33 TCGA-ND-A4WC-01 19 15795927 15795927 G A CYP4F12 Silent p.A345A 0.37 TCGA-ND-A4WC-01 19 15997104 15997104 C A CYP4F2 Missense_Mutation p.K311N 0.38 tolerated(0.21) benign(0.015) TCGA-ND-A4WC-01 19 16513114 16513114 C T EPS15L1 Intron 0.28 TCGA-ND-A4WC-01 19 17571484 17571484 G T NXNL1 Missense_Mutation p.F65L 0.36 deleterious(0.02) probably_damaging(0.912) TCGA-ND-A4WC-01 19 17598015 17598015 A C SLC27A1 Missense_Mutation p.S199R 0.16 tolerated(0.15) benign(0.009) TCGA-ND-A4WC-01 19 1787174 1787174 T G ATP8B3 Missense_Mutation p.E1027D 0.38 tolerated(0.96) benign(0.171) TCGA-ND-A4WC-01 19 17986847 17986847 C A SLC5A5 Silent p.V210V 0.29 TCGA-ND-A4WC-01 19 1816537 1816537 C T REXO1 Missense_Mutation p.D1117N 0.32 tolerated(1) benign(0.364) TCGA-ND-A4WC-01 19 18170414 18170414 A G IL12RB1 3'UTR 0.38 TCGA-ND-A4WC-01 19 18507553 18507553 C T LRRC25 Missense_Mutation p.R74Q 0.33 tolerated(0.68) benign(0.016) TCGA-ND-A4WC-01 19 1918133 1918133 C T SCAMP4 Silent p.C48C 0.31 TCGA-ND-A4WC-01 19 19643488 19643488 G A YJEFN3 Missense_Mutation p.R86H 0.25 deleterious(0.02) benign(0.097) TCGA-ND-A4WC-01 19 19646484 19646484 C A YJEFN3 Silent p.P230P 0.46 TCGA-ND-A4WC-01 19 19790391 19790391 A C ZNF101 Missense_Mutation p.K198T 0.38 deleterious(0.02) benign(0.119) TCGA-ND-A4WC-01 19 20003628 20003628 A C ZNF253 3'UTR 0.17 TCGA-ND-A4WC-01 19 20808063 20808063 C T ZNF626 Missense_Mutation p.G207D 0.35 deleterious(0.04) benign(0.04) TCGA-ND-A4WC-01 19 21132912 21132912 T G ZNF85 Missense_Mutation p.I531S 0.45 deleterious(0.04) benign(0.34) TCGA-ND-A4WC-01 19 21300262 21300262 T G ZNF714 Silent p.A264A 0.29 TCGA-ND-A4WC-01 19 21365476 21365476 G T ZNF431 Missense_Mutation p.D124Y 0.44 deleterious(0.05) probably_damaging(0.91) TCGA-ND-A4WC-01 19 2151286 2151286 C A AP3D1 Missense_Mutation p.K16N 0.28 deleterious(0) possibly_damaging(0.857) TCGA-ND-A4WC-01 19 21606234 21606234 T G ZNF493 Missense_Mutation p.I258S 0.28 deleterious(0.01) possibly_damaging(0.614) TCGA-ND-A4WC-01 19 21909894 21909894 C T ZNF100 Missense_Mutation p.G407D 0.13 deleterious(0.04) probably_damaging(1) TCGA-ND-A4WC-01 19 21991559 21991559 T G ZNF43 Missense_Mutation p.K427T 0.45 deleterious(0.04) probably_damaging(1) TCGA-ND-A4WC-01 19 21992001 21992001 G A ZNF43 Missense_Mutation p.R280C 0.37 deleterious(0.01) benign(0.003) TCGA-ND-A4WC-01 19 22271895 22271895 G A ZNF257 Missense_Mutation p.R448Q 0.42 tolerated(0.23) benign(0.005) TCGA-ND-A4WC-01 19 22363533 22363533 C A ZNF676 Missense_Mutation p.R329I 0.11 tolerated(0.52) benign(0.26) TCGA-ND-A4WC-01 19 22364033 22364033 A C ZNF676 Missense_Mutation p.I162M 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-ND-A4WC-01 19 22364261 22364261 G T ZNF676 Silent p.T86T 0.32 TCGA-ND-A4WC-01 19 22574423 22574423 C A ZNF98 Missense_Mutation p.M538I 0.36 tolerated(0.62) benign(0) TCGA-ND-A4WC-01 19 22939559 22939559 T G ZNF99 3'Flank 0.29 TCGA-ND-A4WC-01 19 22940624 22940624 T G ZNF99 Missense_Mutation p.K696T 0.33 deleterious(0.02) probably_damaging(0.913) TCGA-ND-A4WC-01 19 23159480 23159480 C A ZNF728 Missense_Mutation p.R220I 0.36 tolerated(0.35) benign(0) TCGA-ND-A4WC-01 19 23405633 23405633 G T ZNF724P Missense_Mutation p.H472N 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-ND-A4WC-01 19 23405890 23405890 C A ZNF724P Missense_Mutation p.R386I 0.42 tolerated(0.39) possibly_damaging(0.725) TCGA-ND-A4WC-01 19 23406199 23406199 T C ZNF724P Missense_Mutation p.K283R 0.29 tolerated(0.05) probably_damaging(0.953) TCGA-ND-A4WC-01 19 23543617 23543617 C T ZNF91 Missense_Mutation p.A722T 0.27 tolerated(0.22) possibly_damaging(0.853) TCGA-ND-A4WC-01 19 23544756 23544756 C A ZNF91 Missense_Mutation p.R342I 0.28 tolerated(0.19) benign(0) TCGA-ND-A4WC-01 19 24102284 24102284 G T ZNF726 Missense_Mutation p.R38I 0.35 deleterious(0) possibly_damaging(0.743) TCGA-ND-A4WC-01 19 24309134 24309134 G T ZNF254 Missense_Mutation p.R111I 0.15 deleterious(0.02) possibly_damaging(0.754) TCGA-ND-A4WC-01 19 24310052 24310052 G A ZNF254 Missense_Mutation p.R417Q 0.46 tolerated(0.94) benign(0.001) TCGA-ND-A4WC-01 19 24310499 24310499 G T ZNF254 Missense_Mutation p.R566I 0.23 tolerated(0.4) benign(0.014) TCGA-ND-A4WC-01 19 30193874 30193874 G A C19orf12 Silent p.V68V 0.35 TCGA-ND-A4WC-01 19 30934829 30934829 C T ZNF536 Silent p.I120I 0.33 TCGA-ND-A4WC-01 19 31025807 31025807 C T ZNF536 Missense_Mutation p.R742C 0.46 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 19 31038888 31038888 G A ZNF536 Missense_Mutation p.G788S 0.29 deleterious(0.03) probably_damaging(1) TCGA-ND-A4WC-01 19 31039523 31039523 A G ZNF536 Silent p.A999A 0.34 TCGA-ND-A4WC-01 19 31769642 31769642 G A TSHZ3 Nonsense_Mutation p.Q353* 0.07 TCGA-ND-A4WC-01 19 33134529 33134529 C T ANKRD27 Silent p.A178A 0.33 TCGA-ND-A4WC-01 19 34263626 34263626 C T CHST8 Silent p.F311F 0.36 TCGA-ND-A4WC-01 19 3462781 3462781 C T NFIC 3'UTR 0.37 TCGA-ND-A4WC-01 19 34832663 34832663 G A KIAA0355 Silent p.Q608Q 0.39 TCGA-ND-A4WC-01 19 35085454 35085454 G A SCGB2B2 Silent p.S5S 0.24 TCGA-ND-A4WC-01 19 35232056 35232056 G T ZNF181 Missense_Mutation p.R257I 0.45 deleterious(0.02) probably_damaging(0.955) TCGA-ND-A4WC-01 19 35233053 35233053 G T ZNF181 3'UTR 0.35 TCGA-ND-A4WC-01 19 35249920 35249920 A C ZNF599 3'UTR 0.40 TCGA-ND-A4WC-01 19 35251258 35251258 A C ZNF599 Missense_Mutation p.L150V 0.21 tolerated(0.4) benign(0.1) TCGA-ND-A4WC-01 19 35786762 35786762 G T MAG Missense_Mutation p.R98L 0.36 deleterious(0.01) benign(0.129) TCGA-ND-A4WC-01 19 36108227 36108227 C T HAUS5 Silent p.F198F 0.38 TCGA-ND-A4WC-01 19 36110954 36110954 C A HAUS5 Missense_Mutation p.L483M 0.35 tolerated(0.16) possibly_damaging(0.639) TCGA-ND-A4WC-01 19 36205547 36205547 A C ZBTB32 Silent p.R7R 0.30 TCGA-ND-A4WC-01 19 36273380 36273380 G A ARHGAP33 Silent p.P397P 0.43 TCGA-ND-A4WC-01 19 36395466 36395466 C T TYROBP 3'UTR 0.38 TCGA-ND-A4WC-01 19 36728316 36728316 G A ZNF146 3'UTR 0.27 TCGA-ND-A4WC-01 19 37130011 37130011 A C ZNF461 Silent p.P412P 0.34 TCGA-ND-A4WC-01 19 37210849 37210849 T G ZNF567 Missense_Mutation p.L377R 0.42 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 19 37240057 37240057 G A ZNF850 Missense_Mutation p.R629C 0.40 tolerated(0.2) probably_damaging(0.958) TCGA-ND-A4WC-01 19 37581896 37581896 G T ZNF420 Splice_Site p.X4_splice 0.36 TCGA-ND-A4WC-01 19 37644184 37644184 C A ZNF585A Missense_Mutation p.R151I 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-ND-A4WC-01 19 37903356 37903356 C A ZNF569 3'UTR 0.47 TCGA-ND-A4WC-01 19 37976191 37976191 C T ZNF570 3'UTR 0.42 TCGA-ND-A4WC-01 19 38027836 38027836 G A ZNF793 Silent p.R92R 0.43 TCGA-ND-A4WC-01 19 38056098 38056098 C A ZNF571 Missense_Mutation p.R411I 0.45 deleterious(0.02) probably_damaging(0.987) TCGA-ND-A4WC-01 19 38160724 38160724 C A ZNF781 Missense_Mutation p.R109I 0.33 tolerated(0.09) possibly_damaging(0.903) TCGA-ND-A4WC-01 19 38161110 38161110 C T ZNF781 5'UTR 0.26 TCGA-ND-A4WC-01 19 38817882 38817882 G A KCNK6 Missense_Mutation p.D261N 0.23 deleterious(0.03) possibly_damaging(0.504) TCGA-ND-A4WC-01 19 38985162 38985162 G A RYR1 Missense_Mutation p.V2149M 0.41 benign(0.007) TCGA-ND-A4WC-01 19 38990408 38990408 C T RYR1 Silent p.S2387S 0.30 TCGA-ND-A4WC-01 19 3905590 3905590 G A ATCAY Missense_Mutation p.E99K 0.45 deleterious(0) possibly_damaging(0.61) TCGA-ND-A4WC-01 19 39384111 39384111 G A SIRT2 Missense_Mutation p.R57C 0.45 deleterious(0) benign(0.402) TCGA-ND-A4WC-01 19 39517572 39517572 G T FBXO27 Missense_Mutation p.L216I 0.30 tolerated(0.17) benign(0.092) TCGA-ND-A4WC-01 19 39735436 39735436 C A IFNL3 Missense_Mutation p.D58Y 0.41 deleterious(0) possibly_damaging(0.898) TCGA-ND-A4WC-01 19 40318227 40318227 C T DYRK1B Missense_Mutation p.A293T 0.24 deleterious(0) probably_damaging(0.965) TCGA-ND-A4WC-01 19 40363943 40363943 T C FCGBP Missense_Mutation p.E4900G 0.38 probably_damaging(0.997) TCGA-ND-A4WC-01 19 40514459 40514459 G A ZNF546 Silent p.R127R 0.34 TCGA-ND-A4WC-01 19 40542471 40542471 A C ZNF780B Missense_Mutation p.L99V 0.38 tolerated(0.31) benign(0.364) TCGA-ND-A4WC-01 19 4054879 4054879 C T ZBTB7A Missense_Mutation p.A118T 0.40 deleterious(0.02) possibly_damaging(0.73) TCGA-ND-A4WC-01 19 40719431 40719431 C T MAP3K10 Silent p.F615F 0.48 TCGA-ND-A4WC-01 19 41386003 41386003 T C CYP2A7 Missense_Mutation p.T214A 0.33 deleterious(0) benign(0.161) TCGA-ND-A4WC-01 19 42352862 42352862 G T DMRTC2 Splice_Site p.X150_splice 0.35 TCGA-ND-A4WC-01 19 42485761 42485761 A G ATP1A3 Missense_Mutation p.S457P 0.35 deleterious(0.02) probably_damaging(0.958) TCGA-ND-A4WC-01 19 42910525 42910525 C T LIPE Missense_Mutation p.R718Q 0.33 deleterious(0.04) benign(0.2) TCGA-ND-A4WC-01 19 4294612 4294612 A G TMIGD2 Missense_Mutation p.F172L 0.33 tolerated(1) benign(0.009) TCGA-ND-A4WC-01 19 43348747 43348747 C A PSG10P RNA 0.28 TCGA-ND-A4WC-01 19 43371222 43371222 A G PSG1 3'Flank 0.20 TCGA-ND-A4WC-01 19 43371408 43371408 C A PSG1 3'UTR 0.38 TCGA-ND-A4WC-01 19 43371842 43371842 A C PSG1 3'UTR 0.35 TCGA-ND-A4WC-01 19 43411078 43411078 G T PSG6 Silent p.V412V 0.34 TCGA-ND-A4WC-01 19 43697359 43697359 G A PSG4 3'UTR 0.22 TCGA-ND-A4WC-01 19 44503353 44503353 G T ZNF155 3'Flank 0.29 TCGA-ND-A4WC-01 19 44740349 44740349 C A ZNF227 Nonsense_Mutation p.S589* 0.48 TCGA-ND-A4WC-01 19 44777266 44777266 C A ZNF233 Silent p.V151V 0.38 TCGA-ND-A4WC-01 19 44833664 44833664 T G ZNF112 Missense_Mutation p.K222Q 0.28 tolerated(0.22) benign(0.043) TCGA-ND-A4WC-01 19 44891906 44891906 C A ZNF285 Missense_Mutation p.K167N 0.32 deleterious(0.01) benign(0.205) TCGA-ND-A4WC-01 19 44981496 44981496 C A ZNF180 Missense_Mutation p.R401I 0.30 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 19 45853653 45853653 G T KLC3 Nonsense_Mutation p.E400* 0.25 TCGA-ND-A4WC-01 19 46627928 46627928 G T IGFL3 5'UTR 0.43 TCGA-ND-A4WC-01 19 47223872 47223872 T G STRN4 Missense_Mutation p.K757T 0.38 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 19 47258711 47258711 C T FKRP Missense_Mutation p.R2W 0.32 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 19 47424921 47424921 C T ARHGAP35 Nonsense_Mutation p.R997* 0.46 TCGA-ND-A4WC-01 19 48378009 48378009 T C SULT2A1 Missense_Mutation p.N217S 0.20 tolerated(0.08) possibly_damaging(0.658) TCGA-ND-A4WC-01 19 48385443 48385443 T C SULT2A1 Missense_Mutation p.R124G 0.13 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 19 48525433 48525433 C T ELSPBP1 Missense_Mutation p.S174F 0.32 deleterious(0.01) possibly_damaging(0.77) TCGA-ND-A4WC-01 19 48806990 48806990 A G CCDC114 Missense_Mutation p.L265P 0.35 tolerated(0.07) benign(0.379) TCGA-ND-A4WC-01 19 49557705 49557705 C T CGB7 Missense_Mutation p.R114H 0.21 tolerated(0.05) benign(0.078) TCGA-ND-A4WC-01 19 49963000 49963000 C T ALDH16A1 Nonsense_Mutation p.R132* 0.34 TCGA-ND-A4WC-01 19 50251695 50251695 T C TSKS Missense_Mutation p.K144R 0.21 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 19 50369710 50369710 T C PNKP Intron 0.17 TCGA-ND-A4WC-01 19 50412779 50412779 T G NUP62 Missense_Mutation p.K96Q 0.40 tolerated(0.07) probably_damaging(0.991) TCGA-ND-A4WC-01 19 50946777 50946777 A C MYBPC2 Missense_Mutation p.K310T 0.35 tolerated(0.1) probably_damaging(0.948) TCGA-ND-A4WC-01 19 51205732 51205732 T G SHANK1 Missense_Mutation p.K580T 0.13 probably_damaging(0.913) TCGA-ND-A4WC-01 19 51218983 51218983 C T SHANK1 Missense_Mutation p.R155Q 0.35 probably_damaging(0.978) TCGA-ND-A4WC-01 19 51274539 51274539 C T GPR32 Missense_Mutation p.P228S 0.32 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 19 51381922 51381922 C T KLK2 3'UTR 0.35 TCGA-ND-A4WC-01 19 51986322 51986322 T C CEACAM18 Missense_Mutation p.I303T 0.11 tolerated(0.18) benign(0.348) TCGA-ND-A4WC-01 19 52133244 52133244 C A SIGLEC5 Missense_Mutation p.G88V 0.14 tolerated(0.09) probably_damaging(0.925) TCGA-ND-A4WC-01 19 52216986 52216986 G A HAS1 Silent p.F477F 0.39 TCGA-ND-A4WC-01 19 52271959 52271959 C A FPR2 Silent p.S16S 0.32 TCGA-ND-A4WC-01 19 52327920 52327920 C T FPR3 Missense_Mutation p.R307C 0.35 deleterious(0) possibly_damaging(0.894) TCGA-ND-A4WC-01 19 52519497 52519497 C A ZNF614 Nonsense_Mutation p.E452* 0.36 TCGA-ND-A4WC-01 19 52569565 52569565 A C ZNF841 Missense_Mutation p.W524G 0.30 tolerated(0.34) benign(0.009) TCGA-ND-A4WC-01 19 52588117 52588117 C A ZNF841 5'UTR 0.47 TCGA-ND-A4WC-01 19 52619047 52619047 C A ZNF616 Missense_Mutation p.R457I 0.38 deleterious(0.04) benign(0.428) TCGA-ND-A4WC-01 19 52660432 52660432 C A ZNF836 Missense_Mutation p.E168D 0.25 tolerated(0.18) benign(0.152) TCGA-ND-A4WC-01 19 52705261 52705261 G A PPP2R1A Missense_Mutation p.R48Q 0.40 deleterious(0.03) possibly_damaging(0.464) TCGA-ND-A4WC-01 19 52918955 52918955 C A ZNF528 Missense_Mutation p.L284I 0.30 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 19 53164066 53164066 C A ZNF83 5'UTR 0.22 TCGA-ND-A4WC-01 19 53208087 53208087 T G ZNF611 3'UTR 0.34 TCGA-ND-A4WC-01 19 53303889 53303889 C T ZNF28 Silent p.R403R 0.32 TCGA-ND-A4WC-01 19 53343750 53343750 T G ZNF468 3'UTR 0.36 TCGA-ND-A4WC-01 19 53454211 53454211 C T ZNF816 Missense_Mutation p.V273I 0.28 tolerated(0.09) benign(0.102) TCGA-ND-A4WC-01 19 53454447 53454447 C A ZNF816 Missense_Mutation p.R194I 0.32 tolerated(0.08) benign(0.094) TCGA-ND-A4WC-01 19 53578315 53578315 G A ZNF160 Missense_Mutation p.S46F 0.37 tolerated(0.17) probably_damaging(0.951) TCGA-ND-A4WC-01 19 53644730 53644730 G T ZNF347 Missense_Mutation p.H452N 0.38 deleterious(0) probably_damaging(0.953) TCGA-ND-A4WC-01 19 53762110 53762110 G A VN1R2 Missense_Mutation p.G161E 0.35 tolerated(0.1) possibly_damaging(0.808) TCGA-ND-A4WC-01 19 53762646 53762646 C A VN1R2 Missense_Mutation p.L340I 0.34 tolerated(0.07) possibly_damaging(0.515) TCGA-ND-A4WC-01 19 53770013 53770013 T C VN1R4 Nonstop_Mutation p.*302Wext*8 0.34 TCGA-ND-A4WC-01 19 53770552 53770552 C A VN1R4 Missense_Mutation p.A123S 0.18 tolerated(0.1) benign(0.359) TCGA-ND-A4WC-01 19 53848860 53848860 G T ZNF845 Missense_Mutation p.E39D 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-ND-A4WC-01 19 53911394 53911394 T G ZNF765 Missense_Mutation p.F196V 0.10 deleterious(0.03) benign(0.115) TCGA-ND-A4WC-01 19 53989942 53989942 C A ZNF813 Nonsense_Mutation p.C24* 0.21 TCGA-ND-A4WC-01 19 54080743 54080743 G A ZNF331 Missense_Mutation p.R310Q 0.33 tolerated(0.38) probably_damaging(0.99) TCGA-ND-A4WC-01 19 54219879 54219879 T C MIR521-2 RNA 0.30 TCGA-ND-A4WC-01 19 54327368 54327368 C T NLRP12 Missense_Mutation p.E21K 0.42 deleterious(0.03) possibly_damaging(0.793) TCGA-ND-A4WC-01 19 54418757 54418757 C T CACNG7 Missense_Mutation p.S141L 0.42 deleterious(0) probably_damaging(0.951) TCGA-ND-A4WC-01 19 54799935 54799935 A C LILRA3 3'UTR 0.62 TCGA-ND-A4WC-01 19 55144057 55144057 C T LILRB1 Silent p.L268L 0.31 TCGA-ND-A4WC-01 19 55221508 55221508 C A AC098784.2 3'Flank 0.37 TCGA-ND-A4WC-01 19 55449593 55449593 T G NLRP7 Missense_Mutation p.I650L 0.32 tolerated(0.7) benign(0) TCGA-ND-A4WC-01 19 55450260 55450260 C A NLRP7 Nonsense_Mutation p.E643* 0.28 TCGA-ND-A4WC-01 19 55451265 55451265 C T NLRP7 Missense_Mutation p.D308N 0.36 deleterious(0.01) benign(0.374) TCGA-ND-A4WC-01 19 55649407 55649407 C A TNNT1 Missense_Mutation p.K141N 0.11 deleterious(0) possibly_damaging(0.883) TCGA-ND-A4WC-01 19 55665401 55665401 C A TNNI3 Missense_Mutation p.E182D 0.34 tolerated(0.07) benign(0) TCGA-ND-A4WC-01 19 56243645 56243645 C A NLRP9 Missense_Mutation p.D518Y 0.39 tolerated(0.06) possibly_damaging(0.804) TCGA-ND-A4WC-01 19 56329275 56329275 C T NLRP11 Missense_Mutation p.R89Q 0.41 tolerated(0.12) benign(0.064) TCGA-ND-A4WC-01 19 56538862 56538862 C T NLRP5 Silent p.V421V 0.41 TCGA-ND-A4WC-01 19 56736267 56736267 A C ZSCAN5A Missense_Mutation p.F50C 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 19 56935607 56935607 A C ZNF583 Missense_Mutation p.K527T 0.31 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 19 56935644 56935644 G A ZNF583 Silent p.E539E 0.21 TCGA-ND-A4WC-01 19 56953524 56953524 T C ZNF667 Silent p.T280T 0.21 TCGA-ND-A4WC-01 19 57036962 57036962 A G ZNF471 Missense_Mutation p.H509R 0.37 deleterious(0) probably_damaging(0.989) TCGA-ND-A4WC-01 19 57088168 57088168 G T ZNF470 Missense_Mutation p.R124I 0.20 deleterious(0) benign(0.001) TCGA-ND-A4WC-01 19 57326134 57326134 G A PEG3 Nonsense_Mutation p.R1226* 0.37 TCGA-ND-A4WC-01 19 57327758 57327758 G A PEG3 Silent p.L684L 0.20 TCGA-ND-A4WC-01 19 57335881 57335881 C A PEG3 Missense_Mutation p.R48M 0.43 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 19 57640183 57640183 T G USP29 Missense_Mutation p.F47C 0.25 deleterious(0.04) benign(0.004) TCGA-ND-A4WC-01 19 57640189 57640189 G T USP29 Missense_Mutation p.R49I 0.39 deleterious(0.01) benign(0.4) TCGA-ND-A4WC-01 19 57642424 57642424 A G USP29 Missense_Mutation p.N794S 0.12 tolerated(0.2) benign(0.01) TCGA-ND-A4WC-01 19 57646993 57646993 G T ZIM3 Missense_Mutation p.L238I 0.35 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 19 57647266 57647266 C T ZIM3 Missense_Mutation p.D147N 0.31 tolerated(0.15) benign(0) TCGA-ND-A4WC-01 19 5766116 5766116 G A CATSPERD Silent p.S503S 0.36 TCGA-ND-A4WC-01 19 57802428 57802428 C T ZNF460 Silent p.F173F 0.33 TCGA-ND-A4WC-01 19 57839976 57839976 C A ZNF543 Silent p.L382L 0.31 TCGA-ND-A4WC-01 19 57840782 57840782 G T ZNF543 3'UTR 0.29 TCGA-ND-A4WC-01 19 57876402 57876402 C A TRAPPC2P1 Missense_Mutation p.F67L 0.29 deleterious(0.01) benign(0.008) TCGA-ND-A4WC-01 19 57967372 57967372 C A VN1R1 Missense_Mutation p.K161N 0.09 deleterious(0.02) possibly_damaging(0.516) TCGA-ND-A4WC-01 19 58049412 58049412 T G ZNF549 Missense_Mutation p.F347C 0.35 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 19 58049766 58049766 G T ZNF549 Missense_Mutation p.R465I 0.34 deleterious(0) possibly_damaging(0.453) TCGA-ND-A4WC-01 19 58067768 58067768 C T ZNF550 5'Flank 0.44 TCGA-ND-A4WC-01 19 58084262 58084262 T G ZNF416 Missense_Mutation p.Q337P 0.31 tolerated(0.17) possibly_damaging(0.906) TCGA-ND-A4WC-01 19 58101659 58101659 C A ZIK1 Missense_Mutation p.F160L 0.36 tolerated(0.21) benign(0.002) TCGA-ND-A4WC-01 19 58118092 58118092 T G ZNF530 Missense_Mutation p.F400C 0.45 deleterious(0) possibly_damaging(0.836) TCGA-ND-A4WC-01 19 58199270 58199270 C T ZNF551 Missense_Mutation p.R543C 0.28 tolerated(0.19) benign(0.002) TCGA-ND-A4WC-01 19 58388316 58388316 G A ZNF814 Missense_Mutation p.T44M 0.32 tolerated(1) benign(0.02) TCGA-ND-A4WC-01 19 58441904 58441904 C A ZNF418 Missense_Mutation p.D9Y 0.30 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 19 58452990 58452990 T C ZNF256 Missense_Mutation p.K396E 0.42 tolerated(1) benign(0.007) TCGA-ND-A4WC-01 19 58472793 58472793 C T C19orf18 Silent p.E166E 0.30 TCGA-ND-A4WC-01 19 58578538 58578538 T G ZNF135 Missense_Mutation p.L253R 0.33 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 19 58773431 58773431 A G ZNF544 Missense_Mutation p.T487A 0.27 deleterious(0.01) probably_damaging(0.944) TCGA-ND-A4WC-01 19 5894850 5894850 A C NDUFA11 Intron 0.33 TCGA-ND-A4WC-01 19 59067707 59067707 A C UBE2M Missense_Mutation p.I129M 0.31 tolerated(0.19) probably_damaging(0.941) TCGA-ND-A4WC-01 19 59068073 59068073 C T UBE2M Missense_Mutation p.V110I 0.27 tolerated(0.15) benign(0.181) TCGA-ND-A4WC-01 19 6262312 6262312 T C MLLT1 Missense_Mutation p.E68G 0.28 deleterious(0) probably_damaging(0.928) TCGA-ND-A4WC-01 19 6416504 6416504 G A KHSRP Silent p.I495I 0.35 TCGA-ND-A4WC-01 19 6670139 6670139 G A TNFSF14 5'UTR 0.38 TCGA-ND-A4WC-01 19 6887590 6887590 C A EMR1 5'UTR 0.24 TCGA-ND-A4WC-01 19 6906479 6906479 G A EMR1 Missense_Mutation p.D329N 0.38 tolerated(1) benign(0.002) TCGA-ND-A4WC-01 19 7125368 7125368 A G INSR Missense_Mutation p.S1062P 0.30 tolerated(0.1) possibly_damaging(0.823) TCGA-ND-A4WC-01 19 7523545 7523545 T C ARHGEF18 Missense_Mutation p.W589R 0.19 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 19 7754000 7754000 A T FCER2 3'UTR 0.28 TCGA-ND-A4WC-01 19 7987561 7987561 C T SNAPC2 Missense_Mutation p.S306L 0.36 tolerated(0.2) benign(0.08) TCGA-ND-A4WC-01 19 8191614 8191614 G T FBN3 Missense_Mutation p.S800Y 0.33 deleterious(0) probably_damaging(0.934) TCGA-ND-A4WC-01 19 8612994 8612994 C T MYO1F Missense_Mutation p.E399K 0.46 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 19 8953322 8953322 T G MBD3L1 Intron 0.16 TCGA-ND-A4WC-01 19 9014641 9014641 T C MUC16 Silent p.K12778K 0.40 TCGA-ND-A4WC-01 19 9049889 9049889 G A MUC16 Missense_Mutation p.P10581L 0.45 benign(0) TCGA-ND-A4WC-01 19 9057532 9057532 T C MUC16 Missense_Mutation p.T9972A 0.29 unknown(0) TCGA-ND-A4WC-01 19 9062453 9062453 C T MUC16 Silent p.E8331E 0.31 TCGA-ND-A4WC-01 19 9085753 9085753 G T MUC16 Missense_Mutation p.S2021Y 0.35 unknown(0) TCGA-ND-A4WC-01 19 9089181 9089181 C A MUC16 Missense_Mutation p.E878D 0.27 unknown(0) TCGA-ND-A4WC-01 19 9213578 9213578 G T OR7G2 Silent p.L135L 0.18 TCGA-ND-A4WC-01 19 9271130 9271130 G T ZNF317 Missense_Mutation p.R270I 0.38 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 19 9296569 9296569 A G OR7D2 Missense_Mutation p.T38A 0.12 tolerated_low_confidence(0.07) benign(0.023) TCGA-ND-A4WC-01 19 9362120 9362120 G A OR7E24 Missense_Mutation p.S134N 0.39 deleterious(0.01) benign(0.003) TCGA-ND-A4WC-01 19 9406051 9406051 A C ZNF699 3'UTR 0.09 TCGA-ND-A4WC-01 19 9577913 9577913 T C ZNF560 Silent p.K570K 0.35 TCGA-ND-A4WC-01 19 9583919 9583919 T C ZNF560 Silent p.K58K 0.44 TCGA-ND-A4WC-01 19 9639180 9639180 G A ZNF426 Missense_Mutation p.T514M 0.37 deleterious(0.02) benign(0.172) TCGA-ND-A4WC-01 19 9677366 9677366 T G ZNF121 Missense_Mutation p.E141D 0.40 deleterious(0.01) benign(0.031) TCGA-ND-A4WC-01 1 100159639 100159639 A G PALMD 3'UTR 0.38 TCGA-ND-A4WC-01 1 100480922 100480922 G T SLC35A3 Missense_Mutation p.K233N 0.30 tolerated(0.16) benign(0.002) TCGA-ND-A4WC-01 1 100950090 100950090 T C CDC14A Intron 0.23 TCGA-ND-A4WC-01 1 101004646 101004646 G A GPR88 Missense_Mutation p.A42T 0.29 deleterious(0.03) possibly_damaging(0.676) TCGA-ND-A4WC-01 1 101704898 101704898 C T S1PR1 Missense_Mutation p.R120W 0.37 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 103548435 103548435 G T COL11A1 Missense_Mutation p.S67Y 0.29 probably_damaging(0.989) TCGA-ND-A4WC-01 1 108993212 108993212 A G NBPF6 5'UTR 0.29 TCGA-ND-A4WC-01 1 109242061 109242061 C T PRPF38B Nonsense_Mutation p.R354* 0.11 TCGA-ND-A4WC-01 1 109394800 109394800 C A AKNAD1 Nonsense_Mutation p.E163* 0.35 TCGA-ND-A4WC-01 1 109556458 109556458 C A WDR47 Missense_Mutation p.R111I 0.37 deleterious(0.01) benign(0.001) TCGA-ND-A4WC-01 1 109944548 109944548 T G PSMA5 3'UTR 0.45 TCGA-ND-A4WC-01 1 110155430 110155430 C A GNAT2 Missense_Mutation p.K21N 0.37 tolerated(0.12) probably_damaging(0.929) TCGA-ND-A4WC-01 1 110163640 110163640 G T AMPD2 Missense_Mutation p.R2I 0.44 deleterious_low_confidence(0) unknown(0) TCGA-ND-A4WC-01 1 110921888 110921888 G A SLC16A4 Missense_Mutation p.S206F 0.24 tolerated(0.17) benign(0.049) TCGA-ND-A4WC-01 1 111060320 111060320 G T KCNA10 Missense_Mutation p.L364I 0.36 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 1 111216263 111216263 G A KCNA3 Missense_Mutation p.T390M 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 111216954 111216954 G T KCNA3 Missense_Mutation p.L160I 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-ND-A4WC-01 1 111216964 111216964 G A KCNA3 Silent p.F156F 0.32 TCGA-ND-A4WC-01 1 111492551 111492551 G A LRIF1 Silent p.F597F 0.26 TCGA-ND-A4WC-01 1 111493955 111493955 T C LRIF1 Silent p.T517T 0.26 TCGA-ND-A4WC-01 1 111494605 111494606 - A LRIF1 Frame_Shift_Ins p.T301Yfs*8 0.16 TCGA-ND-A4WC-01 1 111825216 111825216 C A CHIAP2 RNA 0.33 TCGA-ND-A4WC-01 1 111893969 111893969 C T PIFO 3'UTR 0.37 TCGA-ND-A4WC-01 1 112329633 112329633 A C KCND3 Missense_Mutation p.V401G 0.45 deleterious(0) possibly_damaging(0.637) TCGA-ND-A4WC-01 1 113057506 113057506 G A WNT2B Missense_Mutation p.A65T 0.36 tolerated(0.2) benign(0.132) TCGA-ND-A4WC-01 1 113063068 113063068 A C WNT2B Missense_Mutation p.R371S 0.21 tolerated(0.69) benign(0.017) TCGA-ND-A4WC-01 1 11346072 11346072 C T UBIAD1 Nonsense_Mutation p.R301* 0.32 TCGA-ND-A4WC-01 1 114372580 114372580 C T PTPN22 Missense_Mutation p.D709N 0.29 deleterious(0.04) benign(0.437) TCGA-ND-A4WC-01 1 114400230 114400230 C T PTPN22 Intron 0.24 TCGA-ND-A4WC-01 1 114438410 114438410 C T AP4B1 Silent p.E587E 0.30 TCGA-ND-A4WC-01 1 114516185 114516185 G A HIPK1 3'UTR 0.36 TCGA-ND-A4WC-01 1 114964082 114964082 C T TRIM33 Silent p.S679S 0.23 TCGA-ND-A4WC-01 1 115256514 115256514 G A NRAS Missense_Mutation p.A66V 0.34 deleterious(0.01) benign(0.001) TCGA-ND-A4WC-01 1 115487508 115487508 G T SYCP1 Missense_Mutation p.V687L 0.25 tolerated(1) benign(0.009) TCGA-ND-A4WC-01 1 116655179 116655179 T C MAB21L3 5'UTR 0.24 TCGA-ND-A4WC-01 1 117150700 117150700 C A IGSF3 Missense_Mutation p.K362N 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-ND-A4WC-01 1 11735151 11735151 C T MAD2L2 Silent p.S194S 0.19 TCGA-ND-A4WC-01 1 117552698 117552698 A G CD101 Silent p.R90R 0.45 TCGA-ND-A4WC-01 1 117554504 117554504 G A CD101 Missense_Mutation p.E253K 0.27 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 118042105 118042105 G T MAN1A2 Nonsense_Mutation p.E536* 0.32 TCGA-ND-A4WC-01 1 118045593 118045593 G T MAN1A2 Splice_Site p.X598_splice 0.53 TCGA-ND-A4WC-01 1 118530745 118530745 G T SPAG17 Missense_Mutation p.F1868L 0.29 tolerated(0.68) benign(0.009) TCGA-ND-A4WC-01 1 11888619 11888619 T C CLCN6 Silent p.C353C 0.35 TCGA-ND-A4WC-01 1 119958000 119958000 C T HSD3B2 5'UTR 0.19 TCGA-ND-A4WC-01 1 119964880 119964880 C A HSD3B2 Missense_Mutation p.F252L 0.38 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 1 120846067 120846067 C A FAM72B Missense_Mutation p.F101L 0.37 tolerated(0.28) benign(0.013) TCGA-ND-A4WC-01 1 120927161 120927161 C T FCGR1B Silent p.R273R 0.29 TCGA-ND-A4WC-01 1 120930185 120930185 C T FCGR1B Missense_Mutation p.R139Q 0.29 tolerated(1) benign(0.008) TCGA-ND-A4WC-01 1 12337274 12337274 C T VPS13D Missense_Mutation p.T1210M 0.18 benign(0.085) TCGA-ND-A4WC-01 1 12414216 12414216 C T VPS13D Missense_Mutation p.T3206M 0.44 benign(0.157) TCGA-ND-A4WC-01 1 1248900 1248900 C T CPSF3L Missense_Mutation p.E350K 0.40 tolerated(0.07) possibly_damaging(0.704) TCGA-ND-A4WC-01 1 1268175 1268175 A C TAS1R3 Missense_Mutation p.K422Q 0.35 tolerated(0.28) benign(0.038) TCGA-ND-A4WC-01 1 1284285 1284285 T C DVL1 Missense_Mutation p.Q54R 0.55 deleterious(0.01) possibly_damaging(0.607) TCGA-ND-A4WC-01 1 12921510 12921510 G A PRAMEF2 Missense_Mutation p.R434Q 0.48 tolerated(0.37) benign(0.006) TCGA-ND-A4WC-01 1 14106775 14106775 G A PRDM2 Missense_Mutation p.G829S 0.24 possibly_damaging(0.762) TCGA-ND-A4WC-01 1 142713498 142713498 C A RP11-417J8.6 RNA 0.20 TCGA-ND-A4WC-01 1 142713945 142713945 G A RP11-417J8.6 RNA 0.42 TCGA-ND-A4WC-01 1 144879545 144879545 C T PDE4DIP Missense_Mutation p.S1302N 0.11 tolerated(1) benign(0.005) TCGA-ND-A4WC-01 1 145474859 145474859 T G ANKRD34A 3'UTR 0.40 TCGA-ND-A4WC-01 1 145562646 145562646 A G ANKRD35 Silent p.Q778Q 0.58 TCGA-ND-A4WC-01 1 145765393 145765393 A G GPR89A Silent p.I379I 0.18 TCGA-ND-A4WC-01 1 150193064 150193064 C A ANP32E Splice_Site p.X246_splice 0.30 TCGA-ND-A4WC-01 1 150248154 150248154 C A C1orf54 Missense_Mutation p.D45E 0.32 tolerated(0.16) benign(0) TCGA-ND-A4WC-01 1 150672634 150672634 G T HORMAD1 Missense_Mutation p.S353Y 0.32 tolerated(0.3) benign(0.229) TCGA-ND-A4WC-01 1 150959104 150959104 C A ANXA9 Silent p.I193I 0.39 TCGA-ND-A4WC-01 1 150973025 150973025 T C FAM63A Missense_Mutation p.T263A 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-ND-A4WC-01 1 151108986 151108986 C A SEMA6C Missense_Mutation p.K348N 0.34 deleterious(0.02) possibly_damaging(0.661) TCGA-ND-A4WC-01 1 151158378 151158378 C T VPS72 Missense_Mutation p.E56K 0.23 deleterious(0.05) probably_damaging(0.983) TCGA-ND-A4WC-01 1 151611416 151611416 C T SNX27 Nonsense_Mutation p.R122* 0.40 TCGA-ND-A4WC-01 1 151633298 151633298 A C SNX27 Missense_Mutation p.E254A 0.14 deleterious(0) possibly_damaging(0.69) TCGA-ND-A4WC-01 1 152057988 152057988 G A TCHHL1 Silent p.L724L 0.27 TCGA-ND-A4WC-01 1 152085512 152085512 G T TCHH Missense_Mutation p.L61M 0.39 unknown(0) TCGA-ND-A4WC-01 1 152086435 152086435 A C TCHH Missense_Mutation p.F41C 0.15 unknown(0) TCGA-ND-A4WC-01 1 152193031 152193031 G T HRNR Silent p.S358S 0.27 TCGA-ND-A4WC-01 1 152275493 152275493 G T FLG Missense_Mutation p.H3957N 0.43 unknown(0) TCGA-ND-A4WC-01 1 152329831 152329831 G T FLG2 Missense_Mutation p.S144Y 0.34 unknown(0) TCGA-ND-A4WC-01 1 152733586 152733586 C A KPRP Missense_Mutation p.P508T 0.31 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-ND-A4WC-01 1 152784893 152784893 C T LCE1B 5'UTR 0.42 TCGA-ND-A4WC-01 1 153012694 153012694 C T SPRR2D Silent p.Q43Q 0.12 TCGA-ND-A4WC-01 1 153066000 153066000 C A SPRR2E 3'UTR 0.37 TCGA-ND-A4WC-01 1 153084955 153084955 C A SPRR2F 3'UTR 0.40 TCGA-ND-A4WC-01 1 153632005 153632005 G A SNAPIN Missense_Mutation p.R91H 0.35 deleterious(0) probably_damaging(0.95) TCGA-ND-A4WC-01 1 153955547 153955547 G A RAB13 Intron 0.44 TCGA-ND-A4WC-01 1 154098814 154098814 G T NUP210L Silent p.T437T 0.24 TCGA-ND-A4WC-01 1 154841560 154841560 C A KCNN3 Missense_Mutation p.G294V 0.28 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 1 155023920 155023920 T C ADAM15 Missense_Mutation p.S20P 0.42 deleterious_low_confidence(0.04) unknown(0) TCGA-ND-A4WC-01 1 155252476 155252476 T G HCN3 Missense_Mutation p.Y185D 0.27 deleterious(0) benign(0.345) TCGA-ND-A4WC-01 1 155294608 155294608 T C RUSC1 Intron 0.30 TCGA-ND-A4WC-01 1 155631027 155631027 A C YY1AP1 Intron 0.33 TCGA-ND-A4WC-01 1 156222291 156222291 G A SMG5 Silent p.I889I 0.33 TCGA-ND-A4WC-01 1 156354664 156354664 G A RHBG 3'UTR 0.27 TCGA-ND-A4WC-01 1 156354674 156354674 G A RHBG 3'UTR 0.27 TCGA-ND-A4WC-01 1 156622874 156622874 G A BCAN Intron 0.42 TCGA-ND-A4WC-01 1 156642319 156642319 T C NES Missense_Mutation p.Q554R 0.39 tolerated(0.07) benign(0.03) TCGA-ND-A4WC-01 1 156697363 156697363 A C ISG20L2 Missense_Mutation p.F28V 0.42 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 1 156703223 156703223 G A RRNAD1 Missense_Mutation p.E183K 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-ND-A4WC-01 1 156928929 156928929 G A ARHGEF11 Missense_Mutation p.R430C 0.44 deleterious(0.01) possibly_damaging(0.905) TCGA-ND-A4WC-01 1 157014242 157014242 C A ARHGEF11 5'UTR 0.27 TCGA-ND-A4WC-01 1 157659642 157659642 C T FCRL3 Missense_Mutation p.V586I 0.39 tolerated(0.24) benign(0.087) TCGA-ND-A4WC-01 1 157667524 157667524 G T FCRL3 Missense_Mutation p.H162N 0.39 deleterious(0.01) possibly_damaging(0.653) TCGA-ND-A4WC-01 1 157811524 157811524 T G CD5L 5'UTR 0.50 TCGA-ND-A4WC-01 1 15789927 15789927 G A CELA2A Missense_Mutation p.D135N 0.28 tolerated(0.12) benign(0.012) TCGA-ND-A4WC-01 1 158064879 158064879 G A KIRREL Missense_Mutation p.R748Q 0.33 tolerated(0.13) probably_damaging(0.951) TCGA-ND-A4WC-01 1 158225933 158225933 G A CD1A Silent p.G155G 0.32 TCGA-ND-A4WC-01 1 158263087 158263087 G A CD1C Silent p.K325K 0.17 TCGA-ND-A4WC-01 1 158368397 158368397 G T OR10T2 Missense_Mutation p.P287H 0.37 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 1 158548750 158548750 A C OR10X1 Missense_Mutation p.F314V 0.10 deleterious(0.03) benign(0.126) TCGA-ND-A4WC-01 1 158549183 158549183 G T OR10X1 Missense_Mutation p.F169L 0.46 tolerated(0.45) probably_damaging(0.999) TCGA-ND-A4WC-01 1 158582729 158582729 C T SPTA1 Missense_Mutation p.D2338N 0.33 deleterious(0) possibly_damaging(0.632) TCGA-ND-A4WC-01 1 158605732 158605732 C A SPTA1 Missense_Mutation p.W1801C 0.31 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 159170792 159170792 G A CADM3 3'UTR 0.58 TCGA-ND-A4WC-01 1 159277721 159277721 G T FCER1A Nonstop_Mutation p.*258Lext*44 0.31 TCGA-ND-A4WC-01 1 159505559 159505559 C T OR10J5 Missense_Mutation p.R80Q 0.37 tolerated(0.36) benign(0.029) TCGA-ND-A4WC-01 1 15987116 15987116 C T RSC1A1 Silent p.I251I 0.23 TCGA-ND-A4WC-01 1 15987291 15987291 T G RSC1A1 Missense_Mutation p.L310V 0.50 tolerated(0.06) possibly_damaging(0.662) TCGA-ND-A4WC-01 1 160106452 160106452 G A ATP1A2 Missense_Mutation p.D886N 0.38 tolerated(0.56) benign(0.005) TCGA-ND-A4WC-01 1 160252876 160252876 C A PEX19 Missense_Mutation p.E68D 0.34 tolerated(0.28) benign(0.107) TCGA-ND-A4WC-01 1 160276964 160276964 G A COPA Missense_Mutation p.R431W 0.37 deleterious(0) probably_damaging(0.944) TCGA-ND-A4WC-01 1 160519727 160519727 C T CD84 Missense_Mutation p.E318K 0.35 tolerated(0.07) benign(0.074) TCGA-ND-A4WC-01 1 160580494 160580494 T C SLAMF1 3'UTR 0.14 TCGA-ND-A4WC-01 1 160651093 160651093 G A CD48 Missense_Mutation p.T184I 0.28 tolerated(0.28) benign(0.199) TCGA-ND-A4WC-01 1 161512689 161512689 G A FCGR3A 3'UTR 0.36 TCGA-ND-A4WC-01 1 161697300 161697300 G T FCRLB Nonsense_Mutation p.E377* 0.34 TCGA-ND-A4WC-01 1 161882144 161882144 T G ATF6 Missense_Mutation p.I593S 0.23 deleterious(0) possibly_damaging(0.635) TCGA-ND-A4WC-01 1 162536047 162536047 G T UAP1 Missense_Mutation p.K63N 0.45 tolerated(0.3) benign(0.029) TCGA-ND-A4WC-01 1 163044354 163044354 T C RGS4 3'UTR 0.30 TCGA-ND-A4WC-01 1 164761784 164761784 C T PBX1 Missense_Mutation p.R107W 0.47 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 165624771 165624771 C A MGST3 3'UTR 0.22 TCGA-ND-A4WC-01 1 165860500 165860500 A C UCK2 Missense_Mutation p.K99N 0.26 deleterious(0.03) benign(0.109) TCGA-ND-A4WC-01 1 166974561 166974561 C A MAEL Missense_Mutation p.L258I 0.43 tolerated(0.25) benign(0.045) TCGA-ND-A4WC-01 1 166991017 166991017 C A MAEL Missense_Mutation p.F410L 0.40 tolerated_low_confidence(0.25) benign(0.001) TCGA-ND-A4WC-01 1 16719767 16719767 A G SZRD1 Missense_Mutation p.D49G 0.12 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 1 167778898 167778898 C A ADCY10 3'UTR 0.33 TCGA-ND-A4WC-01 1 167817657 167817657 G T ADCY10 Silent p.V793V 0.11 TCGA-ND-A4WC-01 1 167844384 167844384 C T ADCY10 Missense_Mutation p.D483N 0.34 tolerated(0.97) benign(0.002) TCGA-ND-A4WC-01 1 167944083 167944083 C T DCAF6 Missense_Mutation p.R90C 0.45 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 1 168513198 168513198 C A XCL2 Missense_Mutation p.R2I 0.30 deleterious(0) possibly_damaging(0.766) TCGA-ND-A4WC-01 1 16912039 16912039 C A NBPF1 Missense_Mutation p.E311D 0.05 deleterious(0.01) possibly_damaging(0.851) TCGA-ND-A4WC-01 1 169511762 169511762 C A F5 Nonsense_Mutation p.E856* 0.40 TCGA-ND-A4WC-01 1 169529841 169529841 G A F5 Silent p.I179I 0.36 TCGA-ND-A4WC-01 1 169578790 169578790 G A SELP Missense_Mutation p.R429W 0.35 tolerated(0.14) benign(0.009) TCGA-ND-A4WC-01 1 169776949 169776949 A G C1orf112 Missense_Mutation p.Q194R 0.38 tolerated(0.21) possibly_damaging(0.637) TCGA-ND-A4WC-01 1 170508562 170508562 C T GORAB Silent p.L116L 0.29 TCGA-ND-A4WC-01 1 170633455 170633455 G A PRRX1 Silent p.K32K 0.11 TCGA-ND-A4WC-01 1 172411565 172411565 A G PIGC Silent p.C66C 0.30 TCGA-ND-A4WC-01 1 172411630 172411630 T C PIGC Missense_Mutation p.K45E 0.35 tolerated(0.37) benign(0.079) TCGA-ND-A4WC-01 1 172633520 172633520 C T FASLG Silent p.A147A 0.16 TCGA-ND-A4WC-01 1 173020022 173020022 G T TNFSF18 Missense_Mutation p.H27Q 0.52 tolerated(0.17) benign(0.282) TCGA-ND-A4WC-01 1 173155898 173155898 G A TNFSF4 Silent p.I103I 0.47 TCGA-ND-A4WC-01 1 173794441 173794441 T C DARS2 Missense_Mutation p.I25T 0.26 tolerated_low_confidence(0.13) benign(0.001) TCGA-ND-A4WC-01 1 173873151 173873151 C T SERPINC1 Missense_Mutation p.G424D 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 1 173881126 173881126 C A SERPINC1 Missense_Mutation p.E145D 0.40 tolerated(0.09) possibly_damaging(0.846) TCGA-ND-A4WC-01 1 173910505 173910505 G T RC3H1 Missense_Mutation p.S1050Y 0.31 deleterious_low_confidence(0.02) benign(0.398) TCGA-ND-A4WC-01 1 174219751 174219751 G T RABGAP1L Missense_Mutation p.D286Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 1 174417471 174417471 T C GPR52 Silent p.Y74Y 0.40 TCGA-ND-A4WC-01 1 174983744 174983744 C T MRPS14 3'UTR 0.25 TCGA-ND-A4WC-01 1 17567222 17567222 A C PADI1 Missense_Mutation p.K575N 0.39 tolerated(0.15) benign(0.009) TCGA-ND-A4WC-01 1 176132020 176132020 C A RFWD2 Missense_Mutation p.K249N 0.33 deleterious(0) probably_damaging(0.974) TCGA-ND-A4WC-01 1 176132999 176132999 T G RFWD2 Missense_Mutation p.Q198H 0.26 tolerated(0.11) benign(0.059) TCGA-ND-A4WC-01 1 176903403 176903403 G A ASTN1 Silent p.F852F 0.43 TCGA-ND-A4WC-01 1 177030254 177030254 G A ASTN1 Missense_Mutation p.S144L 0.33 tolerated_low_confidence(0.16) benign(0.131) TCGA-ND-A4WC-01 1 17740182 17740182 G T RCC2 Missense_Mutation p.S353Y 0.07 deleterious(0) probably_damaging(0.913) TCGA-ND-A4WC-01 1 178514661 178514661 A C C1ORF220 Missense_Mutation p.K16T 0.42 possibly_damaging(0.607) TCGA-ND-A4WC-01 1 178834092 178834092 C A ANGPTL1 Nonsense_Mutation p.E274* 0.24 TCGA-ND-A4WC-01 1 178875917 178875917 C T RALGPS2 Missense_Mutation p.S546L 0.34 deleterious(0.03) benign(0.012) TCGA-ND-A4WC-01 1 179380300 179380300 G T AXDND1 Missense_Mutation p.D377Y 0.29 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 1 179564769 179564769 T A TDRD5 Missense_Mutation p.I216N 0.19 tolerated(0.22) benign(0.005) TCGA-ND-A4WC-01 1 179599930 179599930 A C TDRD5 Missense_Mutation p.K334T 0.29 tolerated(0.06) probably_damaging(0.931) TCGA-ND-A4WC-01 1 17961057 17961057 G T ARHGEF10L Missense_Mutation p.R582M 0.08 tolerated(0.15) possibly_damaging(0.547) TCGA-ND-A4WC-01 1 179869292 179869292 C T TOR1AIP1 Silent p.F214F 0.57 TCGA-ND-A4WC-01 1 181702655 181702655 C A CACNA1E Missense_Mutation p.P1011T 0.32 tolerated(0.48) benign(0) TCGA-ND-A4WC-01 1 181724489 181724489 C A CACNA1E Missense_Mutation p.F1315L 0.36 deleterious(0.03) benign(0.031) TCGA-ND-A4WC-01 1 181727969 181727969 G T CACNA1E Nonsense_Mutation p.E1524* 0.35 TCGA-ND-A4WC-01 1 182798103 182798103 T G NPL 3'UTR 0.33 TCGA-ND-A4WC-01 1 182821465 182821465 T G DHX9 Missense_Mutation p.L117R 0.34 tolerated(0.53) possibly_damaging(0.757) TCGA-ND-A4WC-01 1 182848417 182848417 G A DHX9 Missense_Mutation p.R795Q 0.25 deleterious(0.02) benign(0.16) TCGA-ND-A4WC-01 1 183102561 183102561 T C LAMC1 Missense_Mutation p.I1242T 0.33 tolerated(0.29) benign(0.135) TCGA-ND-A4WC-01 1 183502819 183502819 C A SMG7 Missense_Mutation p.L339I 0.42 tolerated(0.06) probably_damaging(0.996) TCGA-ND-A4WC-01 1 184787866 184787866 G A FAM129A Missense_Mutation p.S360L 0.12 tolerated(0.06) possibly_damaging(0.565) TCGA-ND-A4WC-01 1 185069003 185069003 G A RNF2 Missense_Mutation p.R273Q 0.34 tolerated(0.67) benign(0) TCGA-ND-A4WC-01 1 185278208 185278208 T G IVNS1ABP Missense_Mutation p.I70L 0.36 tolerated(0.49) benign(0.01) TCGA-ND-A4WC-01 1 185970453 185970453 G T HMCN1 Nonsense_Mutation p.E1365* 0.31 TCGA-ND-A4WC-01 1 186055441 186055441 C A HMCN1 Missense_Mutation p.S2983Y 0.33 probably_damaging(0.998) TCGA-ND-A4WC-01 1 186275466 186275466 G T PRG4 Missense_Mutation p.K205N 0.34 probably_damaging(0.997) TCGA-ND-A4WC-01 1 186283180 186283180 A C PRG4 3'UTR 0.45 TCGA-ND-A4WC-01 1 186321228 186321228 A C TPR Missense_Mutation p.N783K 0.12 benign(0.403) TCGA-ND-A4WC-01 1 186370207 186370207 G T OCLM Missense_Mutation p.K10N 0.37 possibly_damaging(0.607) TCGA-ND-A4WC-01 1 186415580 186415580 G T PDC Nonsense_Mutation p.S64* 0.36 TCGA-ND-A4WC-01 1 190129925 190129925 G A BRINP3 Missense_Mutation p.R353C 0.50 tolerated(0.12) possibly_damaging(0.642) TCGA-ND-A4WC-01 1 192993056 192993056 C T UCHL5 Missense_Mutation p.R217Q 0.31 tolerated(0.05) benign(0.008) TCGA-ND-A4WC-01 1 193053858 193053858 T G TROVE2 Missense_Mutation p.I538M 0.18 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 1 193119493 193119493 A C CDC73 Missense_Mutation p.E296D 0.26 tolerated(0.07) possibly_damaging(0.897) TCGA-ND-A4WC-01 1 19470546 19470546 G A UBR4 Nonsense_Mutation p.R2703* 0.34 TCGA-ND-A4WC-01 1 19477235 19477235 A C UBR4 Missense_Mutation p.I2422M 0.35 probably_damaging(0.952) TCGA-ND-A4WC-01 1 19593790 19593790 G T AKR7L 3'UTR 0.19 TCGA-ND-A4WC-01 1 196977765 196977765 T G CFHR5 Missense_Mutation p.F554L 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-ND-A4WC-01 1 197008478 197008478 A G F13B 3'UTR 0.13 TCGA-ND-A4WC-01 1 197008508 197008508 C A F13B Nonstop_Mutation p.*662Yext*2 0.08 TCGA-ND-A4WC-01 1 197073886 197073886 G A ASPM Missense_Mutation p.R1499W 0.31 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 197099114 197099114 G A ASPM Missense_Mutation p.R854C 0.37 deleterious(0) probably_damaging(0.953) TCGA-ND-A4WC-01 1 197111684 197111684 C T ASPM Silent p.S566S 0.27 TCGA-ND-A4WC-01 1 197128599 197128599 G A ZBTB41 Nonsense_Mutation p.R874* 0.27 TCGA-ND-A4WC-01 1 197390754 197390754 T C CRB1 Missense_Mutation p.L599P 0.28 tolerated(0.07) possibly_damaging(0.516) TCGA-ND-A4WC-01 1 197446978 197446978 T C CRB1 Missense_Mutation p.M1397T 0.38 tolerated(0.47) benign(0.002) TCGA-ND-A4WC-01 1 197704925 197704925 C A DENND1B Intron 0.28 TCGA-ND-A4WC-01 1 198231762 198231762 C A NEK7 Missense_Mutation p.L86I 0.33 deleterious(0) probably_damaging(0.98) TCGA-ND-A4WC-01 1 198682092 198682092 G A PTPRC Silent p.E394E 0.28 TCGA-ND-A4WC-01 1 200017907 200017907 C T NR5A2 Silent p.V357V 0.34 TCGA-ND-A4WC-01 1 201046078 201046078 G A CACNA1S Silent p.N599N 0.28 TCGA-ND-A4WC-01 1 201185815 201185815 C T IGFN1 Missense_Mutation p.R3177W 0.30 possibly_damaging(0.479) TCGA-ND-A4WC-01 1 201860581 201860581 C A SHISA4 Silent p.P144P 0.42 TCGA-ND-A4WC-01 1 202278292 202278292 T C LGR6 Missense_Mutation p.F465S 0.38 deleterious(0) probably_damaging(0.976) TCGA-ND-A4WC-01 1 202711856 202711856 G A KDM5B Missense_Mutation p.R801C 0.33 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 1 202985262 202985262 T G TMEM183A Missense_Mutation p.N234K 0.41 tolerated(0.32) possibly_damaging(0.894) TCGA-ND-A4WC-01 1 203055099 203055099 A G MYOG 5'UTR 0.36 TCGA-ND-A4WC-01 1 203188819 203188819 C A CHIT1 Missense_Mutation p.K296N 0.31 deleterious(0.02) possibly_damaging(0.863) TCGA-ND-A4WC-01 1 203691694 203691694 C T ATP2B4 Silent p.F967F 0.30 TCGA-ND-A4WC-01 1 203799314 203799314 A C ZC3H11A Missense_Mutation p.K228T 0.37 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 1 204130517 204130517 G A REN Silent p.I92I 0.39 TCGA-ND-A4WC-01 1 204379610 204379610 C T PPP1R15B Silent p.G310G 0.12 TCGA-ND-A4WC-01 1 204438067 204438067 G T PIK3C2B Silent p.T288T 0.32 TCGA-ND-A4WC-01 1 205632665 205632665 C T SLC45A3 Missense_Mutation p.R85H 0.25 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 206773144 206773144 A G EIF2D Missense_Mutation p.V332A 0.13 deleterious(0) possibly_damaging(0.529) TCGA-ND-A4WC-01 1 207297270 207297270 T G C4BPA Missense_Mutation p.F144L 0.47 deleterious(0) benign(0.105) TCGA-ND-A4WC-01 1 207495831 207495831 T G CD55 Missense_Mutation p.F69V 0.17 deleterious(0) possibly_damaging(0.829) TCGA-ND-A4WC-01 1 207648459 207648459 T C CR2 Missense_Mutation p.Y872H 0.43 tolerated(0.49) benign(0.002) TCGA-ND-A4WC-01 1 208269408 208269408 C T PLXNA2 Missense_Mutation p.E650K 0.31 tolerated(0.11) benign(0.011) TCGA-ND-A4WC-01 1 209799080 209799080 T G LAMB3 Missense_Mutation p.K630T 0.31 tolerated(0.23) benign(0.011) TCGA-ND-A4WC-01 1 209803245 209803245 C A LAMB3 Missense_Mutation p.E323D 0.34 tolerated(0.14) benign(0.147) TCGA-ND-A4WC-01 1 209933532 209933532 A G TRAF3IP3 Missense_Mutation p.R50G 0.31 tolerated(0.19) probably_damaging(0.999) TCGA-ND-A4WC-01 1 209974599 209974599 T G IRF6 Missense_Mutation p.N54H 0.35 deleterious(0.05) probably_damaging(0.937) TCGA-ND-A4WC-01 1 210187141 210187141 T G SYT14 Missense_Mutation p.I120M 0.08 tolerated(0.12) benign(0.007) TCGA-ND-A4WC-01 1 210267762 210267762 A G SYT14 Missense_Mutation p.T225A 0.32 tolerated(0.09) benign(0.036) TCGA-ND-A4WC-01 1 211847747 211847747 G A NEK2 Missense_Mutation p.R69C 0.38 deleterious(0) probably_damaging(0.946) TCGA-ND-A4WC-01 1 21212755 21212755 G A EIF4G3 Missense_Mutation p.A738V 0.09 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 1 212792760 212792760 A C ATF3 Missense_Mutation p.N137H 0.36 tolerated(0.09) possibly_damaging(0.837) TCGA-ND-A4WC-01 1 213062579 213062579 T G FLVCR1 Missense_Mutation p.F502C 0.17 deleterious(0.03) possibly_damaging(0.447) TCGA-ND-A4WC-01 1 213134691 213134691 A C VASH2 Intron 0.38 TCGA-ND-A4WC-01 1 213414614 213414614 G T RPS6KC1 Nonsense_Mutation p.E599* 0.38 TCGA-ND-A4WC-01 1 214171528 214171528 C A PROX1 Silent p.L550L 0.32 TCGA-ND-A4WC-01 1 215751415 215751415 C T KCTD3 Missense_Mutation p.P130S 0.11 tolerated(0.08) probably_damaging(0.991) TCGA-ND-A4WC-01 1 215793542 215793542 A C KCTD3 Missense_Mutation p.N677T 0.46 tolerated_low_confidence(0.4) benign(0) TCGA-ND-A4WC-01 1 215802207 215802207 G T USH2A Silent p.V5156V 0.40 TCGA-ND-A4WC-01 1 216680421 216680421 G A ESRRG Nonsense_Mutation p.R425* 0.34 TCGA-ND-A4WC-01 1 220386308 220386308 T C RAB3GAP2 Missense_Mutation p.K103E 0.48 deleterious(0) benign(0.366) TCGA-ND-A4WC-01 1 221879708 221879708 C T DUSP10 Silent p.S304S 0.33 TCGA-ND-A4WC-01 1 222696106 222696106 G T HHIPL2 Missense_Mutation p.S671Y 0.34 deleterious_low_confidence(0.03) benign(0.235) TCGA-ND-A4WC-01 1 223177256 223177256 C A DISP1 Missense_Mutation p.F839L 0.25 deleterious(0) possibly_damaging(0.841) TCGA-ND-A4WC-01 1 223285114 223285114 C A TLR5 Missense_Mutation p.K420N 0.31 tolerated(1) benign(0) TCGA-ND-A4WC-01 1 223402693 223402693 G T SUSD4 Missense_Mutation p.F254L 0.44 deleterious(0) benign(0.345) TCGA-ND-A4WC-01 1 223568748 223568748 C A C1orf65 3'UTR 0.42 TCGA-ND-A4WC-01 1 224377638 224377638 T G DEGS1 Missense_Mutation p.F148V 0.12 tolerated(0.11) benign(0.196) TCGA-ND-A4WC-01 1 224482015 224482015 C T NVL Missense_Mutation p.D427N 0.29 deleterious(0) probably_damaging(0.969) TCGA-ND-A4WC-01 1 226924334 226924334 C A ITPKB Missense_Mutation p.D276Y 0.36 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-ND-A4WC-01 1 228111950 228111950 G A WNT9A Silent p.C168C 0.41 TCGA-ND-A4WC-01 1 228566559 228566559 A C OBSCN 3'UTR 0.31 TCGA-ND-A4WC-01 1 22919928 22919928 C A EPHA8 Silent p.I475I 0.67 TCGA-ND-A4WC-01 1 229567127 229567127 C T ACTA1 3'UTR 0.34 TCGA-ND-A4WC-01 1 229773496 229773496 G A URB2 Missense_Mutation p.E1046K 0.37 tolerated(0.82) benign(0.003) TCGA-ND-A4WC-01 1 230891101 230891101 G T CAPN9 Nonsense_Mutation p.E78* 0.24 TCGA-ND-A4WC-01 1 230907779 230907779 G A CAPN9 Missense_Mutation p.R270K 0.12 tolerated(1) benign(0) TCGA-ND-A4WC-01 1 230928177 230928177 C T CAPN9 Silent p.S576S 0.26 TCGA-ND-A4WC-01 1 231061365 231061365 A C TTC13 Missense_Mutation p.Y496D 0.37 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 1 23219473 23219473 C T EPHB2 Missense_Mutation p.R509W 0.35 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 1 232649870 232649870 C T SIPA1L2 Missense_Mutation p.V406I 0.29 deleterious(0.04) benign(0.021) TCGA-ND-A4WC-01 1 233498022 233498022 G A MLK4 Missense_Mutation p.R512Q 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 1 233807367 233807367 G A KCNK1 3'UTR 0.40 TCGA-ND-A4WC-01 1 23408000 23408000 C T KDM1A Silent p.D744D 0.40 TCGA-ND-A4WC-01 1 235878565 235878565 G A LYST Silent p.S3240S 0.40 TCGA-ND-A4WC-01 1 235972297 235972297 A G LYST Silent p.F607F 0.33 TCGA-ND-A4WC-01 1 236646111 236646111 C T EDARADD 3'Flank 0.75 TCGA-ND-A4WC-01 1 236734928 236734928 G T HEATR1 Missense_Mutation p.L1256I 0.27 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 1 23707817 23707817 G T TCEA3 3'UTR 0.35 TCGA-ND-A4WC-01 1 23743807 23743807 A T TCEA3 Nonsense_Mutation p.C105* 0.10 TCGA-ND-A4WC-01 1 237604646 237604646 G T RYR2 Nonsense_Mutation p.E345* 0.34 TCGA-ND-A4WC-01 1 237656360 237656360 A G RYR2 Missense_Mutation p.Q645R 0.23 possibly_damaging(0.658) TCGA-ND-A4WC-01 1 237670013 237670013 G A RYR2 Missense_Mutation p.V873M 0.29 probably_damaging(0.937) TCGA-ND-A4WC-01 1 237756916 237756916 A C RYR2 Missense_Mutation p.E1472D 0.33 benign(0.055) TCGA-ND-A4WC-01 1 237870481 237870481 G A RYR2 Silent p.E3271E 0.45 TCGA-ND-A4WC-01 1 237895444 237895444 G T RYR2 Missense_Mutation p.E3678D 0.15 benign(0.033) TCGA-ND-A4WC-01 1 237961430 237961430 G T RYR2 Nonsense_Mutation p.E4684* 0.40 TCGA-ND-A4WC-01 1 237972271 237972271 G A RYR2 Missense_Mutation p.R4790Q 0.37 possibly_damaging(0.857) TCGA-ND-A4WC-01 1 238090168 238090168 G A RP11-193H5.1 RNA 0.40 TCGA-ND-A4WC-01 1 238090414 238090414 C T RP11-193H5.1 RNA 0.31 TCGA-ND-A4WC-01 1 240341335 240341335 G A FMN2 Missense_Mutation p.D633N 0.12 unknown(0) TCGA-ND-A4WC-01 1 240492401 240492401 A C FMN2 Missense_Mutation p.K1414T 0.35 possibly_damaging(0.843) TCGA-ND-A4WC-01 1 240635744 240635744 C T FMN2 Silent p.D1711D 0.15 TCGA-ND-A4WC-01 1 24077751 24077751 A C TCEB3 Missense_Mutation p.Q245P 0.35 tolerated(0.16) benign(0.006) TCGA-ND-A4WC-01 1 240966271 240966271 T G RGS7 Missense_Mutation p.K431T 0.36 deleterious(0.01) benign(0.013) TCGA-ND-A4WC-01 1 24128799 24128799 C T HMGCL 3'UTR 0.50 TCGA-ND-A4WC-01 1 24201065 24201065 G A CNR2 Missense_Mutation p.P348L 0.34 tolerated(0.41) benign(0) TCGA-ND-A4WC-01 1 242253032 242253032 G T PLD5 3'UTR 0.31 TCGA-ND-A4WC-01 1 242264056 242264056 G T PLD5 Missense_Mutation p.A423D 0.41 tolerated_low_confidence(0.09) possibly_damaging(0.757) TCGA-ND-A4WC-01 1 24388592 24388592 G A MYOM3 Missense_Mutation p.R1260C 0.30 deleterious(0) possibly_damaging(0.886) TCGA-ND-A4WC-01 1 245849741 245849741 C T KIF26B Silent p.V1152V 0.31 TCGA-ND-A4WC-01 1 247654907 247654907 T C OR2W5 RNA 0.37 TCGA-ND-A4WC-01 1 247695252 247695252 G T OR2C3 Missense_Mutation p.L188M 0.34 tolerated(0.25) probably_damaging(0.969) TCGA-ND-A4WC-01 1 247695711 247695711 A C OR2C3 Missense_Mutation p.F35V 0.10 tolerated(0.05) benign(0.048) TCGA-ND-A4WC-01 1 247719762 247719762 G T GCSAML Missense_Mutation p.R28I 0.28 tolerated(0.12) benign(0) TCGA-ND-A4WC-01 1 247875344 247875344 G T OR6F1 Missense_Mutation p.F238L 0.13 deleterious(0.03) possibly_damaging(0.539) TCGA-ND-A4WC-01 1 247901933 247901933 A T OR14K1 Missense_Mutation p.Q6L 0.22 tolerated(0.96) benign(0) TCGA-ND-A4WC-01 1 247921674 247921674 A G OR1C1 Missense_Mutation p.F12S 0.11 deleterious(0) benign(0.197) TCGA-ND-A4WC-01 1 247978588 247978588 C T OR14A16 Silent p.L148L 0.30 TCGA-ND-A4WC-01 1 248059822 248059822 G A OR2W3 Missense_Mutation p.G312R 0.26 tolerated(0.15) unknown(0) TCGA-ND-A4WC-01 1 248262683 248262683 G T OR2L13 Missense_Mutation p.E2D 0.37 tolerated(0.1) benign(0.024) TCGA-ND-A4WC-01 1 248402359 248402359 T G OR2M4 Missense_Mutation p.I43M 0.35 tolerated(0.14) benign(0.007) TCGA-ND-A4WC-01 1 248458370 248458370 C T OR2T12 Missense_Mutation p.E171K 0.27 tolerated(0.13) possibly_damaging(0.477) TCGA-ND-A4WC-01 1 248569685 248569685 G T OR2T1 Missense_Mutation p.K130N 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 1 248651994 248651994 C A OR2T5 Silent p.I35I 0.20 TCGA-ND-A4WC-01 1 25549678 25549678 A T SYF2 3'UTR 0.42 TCGA-ND-A4WC-01 1 25783143 25783143 G A TMEM57 Splice_Site p.X158_splice 0.24 TCGA-ND-A4WC-01 1 26085155 26085155 C A MAN1C1 Missense_Mutation p.F334L 0.29 deleterious(0) probably_damaging(0.966) TCGA-ND-A4WC-01 1 26516052 26516052 C T CNKSR1 3'UTR 0.35 TCGA-ND-A4WC-01 1 26612003 26612003 G A UBXN11 Silent p.F268F 0.35 TCGA-ND-A4WC-01 1 27099430 27099430 C T ARID1A Missense_Mutation p.R1223C 0.40 unknown(0) TCGA-ND-A4WC-01 1 27100374 27100374 T G ARID1A Nonsense_Mutation p.Y1362* 0.38 TCGA-ND-A4WC-01 1 27683511 27683511 A G MAP3K6 Missense_Mutation p.V1118A 0.30 deleterious(0.04) benign(0.006) TCGA-ND-A4WC-01 1 27941062 27941062 C A FGR Missense_Mutation p.M376I 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-ND-A4WC-01 1 28167551 28167551 C T PPP1R8 Missense_Mutation p.R100W 0.34 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 1 28897731 28897731 A G TRNAU1AP Missense_Mutation p.S192G 0.42 tolerated(0.39) benign(0.001) TCGA-ND-A4WC-01 1 29041375 29041375 G A GMEB1 3'UTR 0.31 TCGA-ND-A4WC-01 1 29533290 29533290 G A MECR Silent p.F178F 0.31 TCGA-ND-A4WC-01 1 31194488 31194488 C T MATN1 Missense_Mutation p.E69K 0.32 tolerated(0.09) benign(0.048) TCGA-ND-A4WC-01 1 31212746 31212746 T C LAPTM5 Silent p.Q99Q 0.34 TCGA-ND-A4WC-01 1 31810034 31810034 G A ZCCHC17 Missense_Mutation p.R46Q 0.39 tolerated(0.28) benign(0.055) TCGA-ND-A4WC-01 1 32566248 32566248 G T TMEM39B Intron 0.35 TCGA-ND-A4WC-01 1 32655844 32655844 C T TXLNA Silent p.R319R 0.43 TCGA-ND-A4WC-01 1 33060820 33060820 G A ZBTB8A Missense_Mutation p.R330Q 0.63 benign(0.003) TCGA-ND-A4WC-01 1 33237828 33237828 G T KIAA1522 Missense_Mutation p.K1016N 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-ND-A4WC-01 1 33796962 33796962 C T PHC2 Missense_Mutation p.A664T 0.28 tolerated(0.48) benign(0.379) TCGA-ND-A4WC-01 1 34006219 34006219 A C CSMD2 Silent p.T3035T 0.35 TCGA-ND-A4WC-01 1 34166245 34166245 C T CSMD2 Missense_Mutation p.R1162H 0.33 tolerated(0.26) possibly_damaging(0.828) TCGA-ND-A4WC-01 1 35259970 35259970 C T GJA4 Silent p.F52F 0.33 TCGA-ND-A4WC-01 1 35320785 35320785 G T SMIM12 3'UTR 0.39 TCGA-ND-A4WC-01 1 35476172 35476172 C A ZMYM6 Missense_Mutation p.K456N 0.29 deleterious(0.02) probably_damaging(0.957) TCGA-ND-A4WC-01 1 35836059 35836059 C T ZMYM4 Nonsense_Mutation p.R338* 0.35 TCGA-ND-A4WC-01 1 35972481 35972481 T G KIAA0319L Missense_Mutation p.K133T 0.37 deleterious(0.03) benign(0.002) TCGA-ND-A4WC-01 1 36214035 36214035 G A CLSPN Nonsense_Mutation p.R815* 0.36 TCGA-ND-A4WC-01 1 3680364 3680364 A G CCDC27 Silent p.R472R 0.42 TCGA-ND-A4WC-01 1 37325529 37325529 G A GRIK3 Silent p.V292V 0.36 TCGA-ND-A4WC-01 1 3739988 3739988 G A CEP104 Missense_Mutation p.P835S 0.29 tolerated(0.16) benign(0.244) TCGA-ND-A4WC-01 1 38025037 38025037 C T DNALI1 Missense_Mutation p.R135W 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-ND-A4WC-01 1 38032441 38032441 A C DNALI1 3'UTR 0.33 TCGA-ND-A4WC-01 1 38034732 38034732 G A GNL2 Missense_Mutation p.R530W 0.41 deleterious(0) possibly_damaging(0.696) TCGA-ND-A4WC-01 1 38272619 38272619 A C YRDC Silent p.A178A 0.37 TCGA-ND-A4WC-01 1 38304324 38304324 C T MTF1 Missense_Mutation p.R251Q 0.28 deleterious(0) probably_damaging(0.973) TCGA-ND-A4WC-01 1 39340703 39340703 T C GJA9 Silent p.K356K 0.23 TCGA-ND-A4WC-01 1 39358897 39358897 C A RHBDL2 Splice_Site p.X204_splice 0.21 TCGA-ND-A4WC-01 1 39798397 39798397 C A MACF1 Intron 0.23 TCGA-ND-A4WC-01 1 39800329 39800329 C G MACF1 Intron 0.44 TCGA-ND-A4WC-01 1 39801373 39801373 C A MACF1 Intron 0.33 TCGA-ND-A4WC-01 1 39878370 39878370 G T KIAA0754 Missense_Mutation p.E675D 0.14 unknown(0) TCGA-ND-A4WC-01 1 40131262 40131262 C T NT5C1A Missense_Mutation p.D122N 0.33 deleterious(0) probably_damaging(0.958) TCGA-ND-A4WC-01 1 40207070 40207070 G T PPIE Nonsense_Mutation p.E55* 0.41 TCGA-ND-A4WC-01 1 40307198 40307198 T G TRIT1 3'UTR 0.38 TCGA-ND-A4WC-01 1 40307283 40307283 G T TRIT1 3'UTR 0.41 TCGA-ND-A4WC-01 1 40319675 40319675 T G TRIT1 Missense_Mutation p.E127D 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-ND-A4WC-01 1 40701803 40701803 C T RLF Nonsense_Mutation p.R477* 0.39 TCGA-ND-A4WC-01 1 40705776 40705776 C A RLF Missense_Mutation p.S1801Y 0.44 deleterious(0.04) benign(0.341) TCGA-ND-A4WC-01 1 40717052 40717052 G A TMCO2 Missense_Mutation p.R112Q 0.38 tolerated_low_confidence(0.57) benign(0) TCGA-ND-A4WC-01 1 41541092 41541092 G A SCMH1 Silent p.S249S 0.38 TCGA-ND-A4WC-01 1 43031966 43031966 G T CCDC30 Splice_Site p.X226_splice 0.47 TCGA-ND-A4WC-01 1 43076678 43076678 G T CCDC30 Missense_Mutation p.E471D 0.23 deleterious(0.01) possibly_damaging(0.834) TCGA-ND-A4WC-01 1 43124947 43124947 C A PPIH Intron 0.33 TCGA-ND-A4WC-01 1 43205521 43205521 C T CLDN19 Missense_Mutation p.A72T 0.32 tolerated(0.24) benign(0.352) TCGA-ND-A4WC-01 1 44474151 44474151 T C SLC6A9 Missense_Mutation p.D228G 0.37 tolerated(0.1) possibly_damaging(0.832) TCGA-ND-A4WC-01 1 45481017 45481017 C T UROD Silent p.I317I 0.39 TCGA-ND-A4WC-01 1 45811195 45811195 T G TESK2 Missense_Mutation p.S345R 0.42 tolerated(0.09) benign(0.012) TCGA-ND-A4WC-01 1 45812447 45812447 A G TESK2 Missense_Mutation p.F266S 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 1 45965208 45965208 T G CCDC163P Missense_Mutation p.N25T 0.27 tolerated_low_confidence(0.9) benign(0.011) TCGA-ND-A4WC-01 1 46290212 46290212 T G MAST2 Missense_Mutation p.D95E 0.33 tolerated_low_confidence(0.31) probably_damaging(0.984) TCGA-ND-A4WC-01 1 47279612 47279612 G A CYP4B1 Missense_Mutation p.D218N 0.36 tolerated(0.16) benign(0.033) TCGA-ND-A4WC-01 1 47534420 47534420 C A CYP4Z1 Missense_Mutation p.L102I 0.28 tolerated(1) possibly_damaging(0.874) TCGA-ND-A4WC-01 1 49208353 49208353 G A BEND5 Missense_Mutation p.S279L 0.40 deleterious(0.04) benign(0.182) TCGA-ND-A4WC-01 1 51735705 51735705 A C RNF11 Missense_Mutation p.Q67H 0.43 deleterious(0) possibly_damaging(0.897) TCGA-ND-A4WC-01 1 52271205 52271205 C T NRD1 Silent p.P781P 0.43 TCGA-ND-A4WC-01 1 52704252 52704252 A C ZFYVE9 Missense_Mutation p.N388T 0.38 tolerated_low_confidence(0.1) benign(0.001) TCGA-ND-A4WC-01 1 52704608 52704608 G T ZFYVE9 Nonsense_Mutation p.E507* 0.20 TCGA-ND-A4WC-01 1 52981573 52981573 C T ZCCHC11 Missense_Mutation p.R291Q 0.35 deleterious(0.01) possibly_damaging(0.796) TCGA-ND-A4WC-01 1 52981592 52981592 C A ZCCHC11 Nonsense_Mutation p.E285* 0.36 TCGA-ND-A4WC-01 1 52991830 52991830 G A ZCCHC11 Silent p.S41S 0.24 TCGA-ND-A4WC-01 1 53237447 53237447 G A ZYG11B Splice_Site p.X317_splice 0.10 TCGA-ND-A4WC-01 1 54060081 54060081 C T GLIS1 Silent p.P165P 0.18 TCGA-ND-A4WC-01 1 54497786 54497786 A G TMEM59 3'UTR 0.45 TCGA-ND-A4WC-01 1 54717490 54717490 G T SSBP3 Missense_Mutation p.S184Y 0.21 deleterious(0.03) possibly_damaging(0.702) TCGA-ND-A4WC-01 1 55118690 55118690 T C MROH7 Missense_Mutation p.S31P 0.35 tolerated_low_confidence(0.07) benign(0.066) TCGA-ND-A4WC-01 1 55119575 55119575 T C MROH7 Missense_Mutation p.C326R 0.35 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-ND-A4WC-01 1 55523792 55523792 G T PCSK9 Missense_Mutation p.D422Y 0.28 deleterious(0.01) possibly_damaging(0.905) TCGA-ND-A4WC-01 1 55567292 55567292 A G USP24 Missense_Mutation p.F1704L 0.17 tolerated(1) benign(0.055) TCGA-ND-A4WC-01 1 55567320 55567320 A G USP24 Silent p.G1694G 0.16 TCGA-ND-A4WC-01 1 55613398 55613398 C T USP24 Missense_Mutation p.R681Q 0.32 tolerated(0.26) possibly_damaging(0.664) TCGA-ND-A4WC-01 1 55624553 55624553 C A USP24 Nonsense_Mutation p.E409* 0.31 TCGA-ND-A4WC-01 1 57395027 57395027 C A C8B 3'UTR 0.39 TCGA-ND-A4WC-01 1 57415369 57415369 T C C8B Silent p.E241E 0.32 TCGA-ND-A4WC-01 1 57425735 57425735 A G C8B Silent p.S69S 0.27 TCGA-ND-A4WC-01 1 59147640 59147640 G T MYSM1 Missense_Mutation p.S359Y 0.38 deleterious(0.01) benign(0.015) TCGA-ND-A4WC-01 1 59160818 59160818 T C MYSM1 Missense_Mutation p.T44A 0.47 deleterious(0.05) benign(0.004) TCGA-ND-A4WC-01 1 6190375 6190375 C A CHD5 Missense_Mutation p.Q1092H 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-ND-A4WC-01 1 6202593 6202593 C T CHD5 Missense_Mutation p.E706K 0.36 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 1 6228304 6228304 T C CHD5 Missense_Mutation p.D38G 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.539) TCGA-ND-A4WC-01 1 62350017 62350017 G A INADL Missense_Mutation p.R1023Q 0.32 tolerated(0.17) benign(0.007) TCGA-ND-A4WC-01 1 62676247 62676247 G T L1TD1 Nonsense_Mutation p.E601* 0.33 TCGA-ND-A4WC-01 1 62703978 62703978 C A KANK4 Missense_Mutation p.A987S 0.38 tolerated(0.18) benign(0.035) TCGA-ND-A4WC-01 1 6272929 6272929 C T RNF207 Intron 0.26 TCGA-ND-A4WC-01 1 62739628 62739628 C A KANK4 Missense_Mutation p.R383I 0.33 tolerated(0.07) benign(0.092) TCGA-ND-A4WC-01 1 6294539 6294539 C A ICMT Intron 0.23 TCGA-ND-A4WC-01 1 63128788 63128788 C T DOCK7 Missense_Mutation p.E18K 0.29 deleterious(0) probably_damaging(0.969) TCGA-ND-A4WC-01 1 6314737 6314737 C T GPR153 Missense_Mutation p.E77K 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-ND-A4WC-01 1 63269418 63269418 G T ATG4C 5'UTR 0.36 TCGA-ND-A4WC-01 1 63894714 63894714 G T ALG6 Nonsense_Mutation p.E415* 0.50 TCGA-ND-A4WC-01 1 63955791 63955791 A G ITGB3BP Silent p.S88S 0.12 TCGA-ND-A4WC-01 1 64605808 64605808 T C ROR1 Silent p.I209I 0.39 TCGA-ND-A4WC-01 1 66999955 66999955 G A SGIP1 5'Flank 0.28 TCGA-ND-A4WC-01 1 67109320 67109320 C T SGIP1 Missense_Mutation p.S126F 0.32 deleterious(0.01) possibly_damaging(0.467) TCGA-ND-A4WC-01 1 6712926 6712926 G A DNAJC11 Missense_Mutation p.A198V 0.41 deleterious(0.03) benign(0.028) TCGA-ND-A4WC-01 1 67199467 67199467 C A SGIP1 Missense_Mutation p.F645L 0.37 deleterious(0.04) possibly_damaging(0.809) TCGA-ND-A4WC-01 1 67423799 67423799 C T MIER1 Nonsense_Mutation p.R133* 0.40 TCGA-ND-A4WC-01 1 67724382 67724382 A G IL23R Silent p.Q487Q 0.27 TCGA-ND-A4WC-01 1 70505121 70505121 A C LRRC7 Missense_Mutation p.K1167T 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-ND-A4WC-01 1 70742520 70742520 C T ANKRD13C Missense_Mutation p.R408Q 0.41 tolerated(0.12) probably_damaging(0.997) TCGA-ND-A4WC-01 1 72058522 72058522 G A NEGR1 Silent p.T306T 0.37 TCGA-ND-A4WC-01 1 74649284 74649284 C A LRRIQ3 Missense_Mutation p.D29Y 0.45 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 1 74670325 74670325 G A FPGT Silent p.T198T 0.28 TCGA-ND-A4WC-01 1 74801723 74801723 C T FPGT-TNNI3K Missense_Mutation p.A305V 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-ND-A4WC-01 1 74835209 74835209 C T FPGT-TNNI3K Missense_Mutation p.A650V 0.33 deleterious(0.03) probably_damaging(0.961) TCGA-ND-A4WC-01 1 77094422 77094422 G T ST6GALNAC3 Missense_Mutation p.K283N 0.35 probably_damaging(1) TCGA-ND-A4WC-01 1 78392235 78392235 G T NEXN Missense_Mutation p.R209I 0.15 deleterious(0.04) benign(0.056) TCGA-ND-A4WC-01 1 78401572 78401572 G T NEXN Missense_Mutation p.R439M 0.38 deleterious(0) probably_damaging(0.993) TCGA-ND-A4WC-01 1 78401718 78401718 A C NEXN Missense_Mutation p.N488H 0.37 tolerated(0.46) benign(0.001) TCGA-ND-A4WC-01 1 78408542 78408542 A C NEXN 3'UTR 0.25 TCGA-ND-A4WC-01 1 78479068 78479068 C A DNAJB4 Missense_Mutation p.S182Y 0.34 deleterious(0) benign(0.301) TCGA-ND-A4WC-01 1 7907680 7907680 A G UTS2 3'Flank 0.22 TCGA-ND-A4WC-01 1 7910941 7910941 T G UTS2 Silent p.R64R 0.33 TCGA-ND-A4WC-01 1 82447575 82447575 C T LPHN2 Missense_Mutation p.T1049I 0.33 deleterious(0) possibly_damaging(0.625) TCGA-ND-A4WC-01 1 8415107 8415107 G T RERE 3'UTR 0.33 TCGA-ND-A4WC-01 1 84335598 84335598 A T TTLL7 3'UTR 0.47 TCGA-ND-A4WC-01 1 84386806 84386806 C T TTLL7 Missense_Mutation p.R443Q 0.36 tolerated(0.29) benign(0.003) TCGA-ND-A4WC-01 1 85331550 85331550 A C LPAR3 Missense_Mutation p.F85C 0.39 deleterious(0.04) possibly_damaging(0.882) TCGA-ND-A4WC-01 1 85736388 85736388 G A BCL10 Missense_Mutation p.R87W 0.37 deleterious(0) probably_damaging(0.96) TCGA-ND-A4WC-01 1 86826116 86826116 T G ODF2L Missense_Mutation p.K416T 0.28 deleterious(0) probably_damaging(0.913) TCGA-ND-A4WC-01 1 86951095 86951095 C A CLCA1 Missense_Mutation p.L269I 0.37 tolerated(0.28) benign(0.282) TCGA-ND-A4WC-01 1 87031554 87031554 T A CLCA4 Missense_Mutation p.F269I 0.43 tolerated(0.17) benign(0.005) TCGA-ND-A4WC-01 1 87036850 87036850 G T CLCA4 Nonsense_Mutation p.E425* 0.30 TCGA-ND-A4WC-01 1 89271369 89271369 T G PKN2 Intron 0.39 TCGA-ND-A4WC-01 1 89449102 89449102 C A RBMXL1 Missense_Mutation p.M136I 0.34 tolerated(0.39) benign(0.002) TCGA-ND-A4WC-01 1 89476677 89476677 A C GBP3 Missense_Mutation p.I424M 0.39 tolerated(0.05) benign(0.017) TCGA-ND-A4WC-01 1 89523768 89523768 C T GBP1 Missense_Mutation p.E261K 0.31 tolerated(0.35) benign(0.154) TCGA-ND-A4WC-01 1 89585912 89585912 G A GBP2 Silent p.F126F 0.30 TCGA-ND-A4WC-01 1 89587645 89587645 G A GBP2 Missense_Mutation p.A2V 0.32 deleterious(0.01) possibly_damaging(0.717) TCGA-ND-A4WC-01 1 90048689 90048689 C T LRRC8B Silent p.F160F 0.36 TCGA-ND-A4WC-01 1 9097586 9097586 A C SLC2A5 3'UTR 0.42 TCGA-ND-A4WC-01 1 91383672 91383672 C T ZNF644 Missense_Mutation p.G1243E 0.49 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 1 91404618 91404618 C A ZNF644 Nonsense_Mutation p.E765* 0.36 TCGA-ND-A4WC-01 1 91845729 91845729 A G HFM1 Missense_Mutation p.F313S 0.36 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 1 92467660 92467660 G T BRDT Missense_Mutation p.S781I 0.19 tolerated(0.09) benign(0.002) TCGA-ND-A4WC-01 1 92712032 92712032 G T GLMN 3'UTR 0.36 TCGA-ND-A4WC-01 1 92737082 92737082 G T GLMN Missense_Mutation p.S288Y 0.29 deleterious(0) possibly_damaging(0.54) TCGA-ND-A4WC-01 1 92756986 92756986 A C GLMN Missense_Mutation p.L92V 0.73 tolerated(0.5) benign(0.01) TCGA-ND-A4WC-01 1 9324611 9324611 G A H6PD Missense_Mutation p.D687N 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 1 94027775 94027775 T G BCAR3 3'UTR 0.31 TCGA-ND-A4WC-01 1 94027904 94027904 T C BCAR3 Missense_Mutation p.K791R 0.39 tolerated(1) possibly_damaging(0.892) TCGA-ND-A4WC-01 1 94032978 94032978 G A BCAR3 Silent p.R719R 0.13 TCGA-ND-A4WC-01 1 94342350 94342350 T G DNTTIP2 Missense_Mutation p.S381R 0.28 deleterious(0.04) benign(0.023) TCGA-ND-A4WC-01 1 94528743 94528743 G T ABCA4 Missense_Mutation p.S562Y 0.32 deleterious(0.01) possibly_damaging(0.797) TCGA-ND-A4WC-01 1 94639376 94639376 A G ARHGAP29 3'UTR 0.38 TCGA-ND-A4WC-01 1 95657239 95657239 T C TMEM56 Missense_Mutation p.Y203H 0.37 tolerated(0.09) benign(0.053) TCGA-ND-A4WC-01 1 98015142 98015142 A G DPYD Missense_Mutation p.S500P 0.41 deleterious(0) probably_damaging(0.913) TCGA-ND-A4WC-01 1 9811693 9811693 C T CLSTN1 Missense_Mutation p.V163M 0.31 deleterious(0.04) benign(0.042) TCGA-ND-A4WC-01 1 99161227 99161227 A C SNX7 Missense_Mutation p.N265H 0.11 deleterious(0.03) benign(0.099) TCGA-ND-A4WC-01 1 99418684 99418684 C T LPPR5 Missense_Mutation p.R188Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 1 99771407 99771407 G A LPPR4 Missense_Mutation p.R378Q 0.32 tolerated(0.33) benign(0.11) TCGA-ND-A4WC-01 20 126299 126299 C T DEFB126 Missense_Mutation p.S101L 0.40 deleterious(0.03) unknown(0) TCGA-ND-A4WC-01 20 1285531 1285531 G A SNPH Silent p.E106E 0.29 TCGA-ND-A4WC-01 20 13251302 13251302 G T ISM1 Missense_Mutation p.R97I 0.24 deleterious(0) possibly_damaging(0.736) TCGA-ND-A4WC-01 20 13755837 13755837 A C ESF1 Missense_Mutation p.F372C 0.36 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 20 13982972 13982972 G T MACROD2 Nonsense_Mutation p.E29* 0.17 TCGA-ND-A4WC-01 20 1460374 1460374 G A SIRPB2 Missense_Mutation p.S141L 0.30 tolerated(0.66) benign(0.001) TCGA-ND-A4WC-01 20 1617063 1617063 G T SIRPG Missense_Mutation p.F173L 0.42 deleterious(0.02) probably_damaging(0.918) TCGA-ND-A4WC-01 20 16359822 16359822 A C KIF16B Missense_Mutation p.L942R 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-ND-A4WC-01 20 18296758 18296758 G T ZNF133 Missense_Mutation p.Q420H 0.34 tolerated(0.37) probably_damaging(0.994) TCGA-ND-A4WC-01 20 20177339 20177339 G A C20orf26 Silent p.K572K 0.38 TCGA-ND-A4WC-01 20 21142620 21142620 G T RP4-777D9.2 Intron 0.41 TCGA-ND-A4WC-01 20 21142658 21142658 G T RP4-777D9.2 Intron 0.37 TCGA-ND-A4WC-01 20 21492550 21492550 T C NKX2-2 3'UTR 0.38 TCGA-ND-A4WC-01 20 23431121 23431121 G A CST11 3'UTR 0.30 TCGA-ND-A4WC-01 20 23472197 23472197 G A CST8 5'UTR 0.43 TCGA-ND-A4WC-01 20 23472478 23472478 A C CST8 Missense_Mutation p.K58N 0.34 deleterious(0) possibly_damaging(0.529) TCGA-ND-A4WC-01 20 23967198 23967198 G A GGTLC1 Silent p.D17D 0.27 TCGA-ND-A4WC-01 20 24988185 24988185 C T ACSS1 3'UTR 0.56 TCGA-ND-A4WC-01 20 25405867 25405868 - A GINS1 Frame_Shift_Ins p.R119Kfs*14 0.32 TCGA-ND-A4WC-01 20 25656309 25656309 A G ZNF337 Missense_Mutation p.S539P 0.32 deleterious(0) unknown(0) TCGA-ND-A4WC-01 20 25656432 25656432 G A ZNF337 Missense_Mutation p.R498W 0.37 deleterious(0.01) possibly_damaging(0.898) TCGA-ND-A4WC-01 20 2597824 2597824 G T TMC2 Nonsense_Mutation p.E683* 0.09 TCGA-ND-A4WC-01 20 2638687 2638687 C A NOP56 Missense_Mutation p.S511Y 0.35 deleterious_low_confidence(0.05) possibly_damaging(0.608) TCGA-ND-A4WC-01 20 2641599 2641599 C T IDH3B Silent p.P118P 0.42 TCGA-ND-A4WC-01 20 2841107 2841107 A T VPS16 Missense_Mutation p.N128Y 0.38 deleterious(0.03) probably_damaging(0.914) TCGA-ND-A4WC-01 20 2843543 2843543 C T VPS16 Missense_Mutation p.R432W 0.42 deleterious(0) probably_damaging(0.984) TCGA-ND-A4WC-01 20 29631559 29631559 G T FRG1B Nonsense_Mutation p.E119* 0.27 TCGA-ND-A4WC-01 20 29960797 29960797 C A DEFB118 Missense_Mutation p.P66T 0.31 tolerated(0.4) possibly_damaging(0.908) TCGA-ND-A4WC-01 20 30689247 30689247 G A HCK Silent p.P502P 0.23 TCGA-ND-A4WC-01 20 30898040 30898040 G T KIF3B Missense_Mutation p.D154Y 0.18 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 20 3127883 3127883 T G FASTKD5 Missense_Mutation p.N612H 0.38 tolerated(0.12) benign(0.169) TCGA-ND-A4WC-01 20 3129698 3129698 A G FASTKD5 Missense_Mutation p.S7P 0.38 deleterious(0.01) benign(0.085) TCGA-ND-A4WC-01 20 31424467 31424467 G T MAPRE1 Nonsense_Mutation p.G99* 0.28 TCGA-ND-A4WC-01 20 31814249 31814249 C A BPIFA3 Missense_Mutation p.L192I 0.24 tolerated(0.22) possibly_damaging(0.874) TCGA-ND-A4WC-01 20 31830330 31830330 C A BPIFA1 Silent p.V256V 0.28 TCGA-ND-A4WC-01 20 31873907 31873907 C A BPIFB1 Missense_Mutation p.L10I 0.34 tolerated(0.09) benign(0.382) TCGA-ND-A4WC-01 20 33080315 33080315 G T ITCH Nonsense_Mutation p.E818* 0.31 TCGA-ND-A4WC-01 20 33092154 33092154 A C ITCH Missense_Mutation p.K853T 0.27 deleterious(0) possibly_damaging(0.882) TCGA-ND-A4WC-01 20 33122566 33122566 C T DYNLRB1 Missense_Mutation p.R72C 0.38 deleterious(0.03) possibly_damaging(0.741) TCGA-ND-A4WC-01 20 33867534 33867534 C T EIF6 Missense_Mutation p.R188Q 0.20 deleterious(0.04) benign(0.088) TCGA-ND-A4WC-01 20 34091280 34091280 C T CEP250 Nonsense_Mutation p.R1695* 0.35 TCGA-ND-A4WC-01 20 34241692 34241692 C T RBM12 Missense_Mutation p.R518Q 0.34 deleterious(0.03) probably_damaging(0.953) TCGA-ND-A4WC-01 20 35399573 35399573 T C DSN1 Missense_Mutation p.T20A 0.33 tolerated_low_confidence(0.11) benign(0.025) TCGA-ND-A4WC-01 20 36488328 36488328 G A CTNNBL1 Missense_Mutation p.D474N 0.41 deleterious(0.01) possibly_damaging(0.518) TCGA-ND-A4WC-01 20 3680010 3680010 C T SIGLEC1 Missense_Mutation p.R542H 0.54 tolerated(0.12) benign(0.015) TCGA-ND-A4WC-01 20 36874470 36874470 A G KIAA1755 Missense_Mutation p.F21S 0.35 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 20 36938940 36938940 C T BPI Missense_Mutation p.S145L 0.38 tolerated(0.1) possibly_damaging(0.482) TCGA-ND-A4WC-01 20 37547186 37547186 G A PPP1R16B Silent p.P527P 0.28 TCGA-ND-A4WC-01 20 37601234 37601234 T C DHX35 Silent p.N69N 0.30 TCGA-ND-A4WC-01 20 37621001 37621001 T C DHX35 Missense_Mutation p.V172A 0.34 tolerated(0.05) benign(0.012) TCGA-ND-A4WC-01 20 3898213 3898213 G T PANK2 Intron 0.47 TCGA-ND-A4WC-01 20 391296 391296 G A RBCK1 Intron 0.35 TCGA-ND-A4WC-01 20 39800865 39800865 G A PLCG1 Silent p.K947K 0.13 TCGA-ND-A4WC-01 20 40033209 40033209 A C CHD6 3'UTR 0.34 TCGA-ND-A4WC-01 20 40709374 40709374 C T PTPRT 3'UTR 0.47 TCGA-ND-A4WC-01 20 40827896 40827896 C T PTPRT Silent p.Q825Q 0.30 TCGA-ND-A4WC-01 20 40944562 40944562 G A PTPRT Missense_Mutation p.S647L 0.39 deleterious(0.01) benign(0.163) TCGA-ND-A4WC-01 20 42163004 42163004 C T L3MBTL1 Silent p.S538S 0.43 TCGA-ND-A4WC-01 20 42203567 42203567 C T SGK2 Missense_Mutation p.L266F 0.49 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 20 43378957 43378957 G T KCNK15 Missense_Mutation p.E157D 0.58 tolerated(0.33) benign(0.014) TCGA-ND-A4WC-01 20 43653766 43653766 G A STK4 Missense_Mutation p.E434K 0.24 tolerated(0.11) benign(0.032) TCGA-ND-A4WC-01 20 43836602 43836602 A C SEMG1 Missense_Mutation p.N222H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 20 43851032 43851032 T G SEMG2 Missense_Mutation p.I253M 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-ND-A4WC-01 20 43945667 43945667 C A RBPJL 3'UTR 0.28 TCGA-ND-A4WC-01 20 44469369 44469369 G A SNX21 Missense_Mutation p.R180Q 0.29 tolerated(0.45) possibly_damaging(0.88) TCGA-ND-A4WC-01 20 44639584 44639584 G A MMP9 Missense_Mutation p.D182N 0.37 deleterious(0.01) possibly_damaging(0.873) TCGA-ND-A4WC-01 20 44803550 44803550 G A CDH22 Silent p.F694F 0.19 TCGA-ND-A4WC-01 20 45194982 45194982 C A SLC13A3 Missense_Mutation p.E460D 0.30 tolerated(0.07) probably_damaging(0.969) TCGA-ND-A4WC-01 20 45362452 45362452 C T SLC2A10 Silent p.I535I 0.40 TCGA-ND-A4WC-01 20 45853141 45853141 T C ZMYND8 Missense_Mutation p.K983E 0.34 tolerated(0.05) probably_damaging(0.998) TCGA-ND-A4WC-01 20 4680119 4680119 C A PRNP Missense_Mutation p.H85N 0.20 tolerated(0.1) probably_damaging(0.989) TCGA-ND-A4WC-01 20 4705395 4705395 C T PRND Silent p.L66L 0.33 TCGA-ND-A4WC-01 20 47630161 47630161 C T ARFGEF2 Nonsense_Mutation p.R1327* 0.40 TCGA-ND-A4WC-01 20 47649561 47649561 T C ARFGEF2 Missense_Mutation p.F1728S 0.36 deleterious(0) possibly_damaging(0.459) TCGA-ND-A4WC-01 20 47733749 47733749 C T STAU1 Missense_Mutation p.E516K 0.40 tolerated(0.06) probably_damaging(0.995) TCGA-ND-A4WC-01 20 4776603 4776603 C T RASSF2 Missense_Mutation p.E49K 0.11 tolerated(0.56) possibly_damaging(0.808) TCGA-ND-A4WC-01 20 47990349 47990349 C T KCNB1 Missense_Mutation p.R583Q 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-ND-A4WC-01 20 49621311 49621311 G T KCNG1 Missense_Mutation p.F269L 0.38 deleterious(0) benign(0.063) TCGA-ND-A4WC-01 20 50092097 50092097 C T NFATC2 Missense_Mutation p.R478Q 0.35 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 20 53171574 53171574 C A DOK5 Missense_Mutation p.H57N 0.48 tolerated(0.2) possibly_damaging(0.762) TCGA-ND-A4WC-01 20 54948493 54948493 A G AURKA Silent p.F275F 0.41 TCGA-ND-A4WC-01 20 55100881 55100881 C T FAM209A Nonsense_Mutation p.R91* 0.29 TCGA-ND-A4WC-01 20 5560680 5560680 C A GPCPD1 Missense_Mutation p.K149N 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-ND-A4WC-01 20 56073449 56073449 A C CTCFL Intron 0.29 TCGA-ND-A4WC-01 20 56093849 56093850 - T CTCFL Frame_Shift_Ins p.F342Ifs*2 0.21 TCGA-ND-A4WC-01 20 56137841 56137841 G A PCK1 Missense_Mutation p.V166M 0.22 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 20 56929309 56929309 T G RAB22A Missense_Mutation p.F159V 0.38 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 20 57428651 57428651 T G GNAS Missense_Mutation p.L111V 0.28 tolerated_low_confidence(0.2) unknown(0) TCGA-ND-A4WC-01 20 57428722 57428722 C T GNAS Silent p.F134F 0.35 TCGA-ND-A4WC-01 20 57594531 57594531 G A TUBB1 5'UTR 0.36 TCGA-ND-A4WC-01 20 5843907 5843907 A G C20orf196 Missense_Mutation p.K139R 0.36 tolerated(0.1) benign(0.019) TCGA-ND-A4WC-01 20 58519545 58519545 G T FAM217B Missense_Mutation p.D183Y 0.35 deleterious(0) probably_damaging(0.972) TCGA-ND-A4WC-01 20 58567518 58567518 G T CDH26 Nonsense_Mutation p.E457* 0.10 TCGA-ND-A4WC-01 20 5904272 5904272 A C CHGB Missense_Mutation p.E494D 0.40 tolerated(0.14) benign(0.269) TCGA-ND-A4WC-01 20 6022404 6022404 G A LRRN4 Missense_Mutation p.S496L 0.41 tolerated(0.33) benign(0.001) TCGA-ND-A4WC-01 20 6057772 6057772 G A FERMT1 3'UTR 0.39 TCGA-ND-A4WC-01 20 6057898 6057898 G T FERMT1 Missense_Mutation p.F652L 0.30 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 20 6069709 6069709 G T FERMT1 Missense_Mutation p.F389L 0.09 deleterious(0.02) benign(0.039) TCGA-ND-A4WC-01 20 60713283 60713283 C T PSMA7 Missense_Mutation p.E179K 0.45 tolerated(0.13) benign(0.036) TCGA-ND-A4WC-01 20 60883729 60883729 A C ADRM1 Missense_Mutation p.K379T 0.33 tolerated(0.07) unknown(0) TCGA-ND-A4WC-01 20 61040911 61040911 C T GATA5 Missense_Mutation p.A298T 0.27 tolerated(0.71) benign(0.008) TCGA-ND-A4WC-01 20 61341007 61341007 G A NTSR1 Missense_Mutation p.A150T 0.33 tolerated(0.52) possibly_damaging(0.811) TCGA-ND-A4WC-01 20 61341123 61341123 C A NTSR1 Missense_Mutation p.F188L 0.28 tolerated(1) benign(0.007) TCGA-ND-A4WC-01 20 61527689 61527689 G T DIDO1 Missense_Mutation p.L704I 0.36 probably_damaging(0.969) TCGA-ND-A4WC-01 20 62129177 62129177 C T EEF1A2 5'UTR 0.35 TCGA-ND-A4WC-01 20 62187143 62187143 G T C20orf195 Nonsense_Mutation p.E43* 0.30 TCGA-ND-A4WC-01 20 62187416 62187416 G A C20orf195 Missense_Mutation p.D134N 0.32 deleterious(0.01) possibly_damaging(0.708) TCGA-ND-A4WC-01 20 62331735 62331735 A G ARFRP1 3'UTR 0.28 TCGA-ND-A4WC-01 20 62729974 62729974 G A OPRL1 Missense_Mutation p.S312N 0.40 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 20 858965 858965 G A ANGPT4 Silent p.F353F 0.39 TCGA-ND-A4WC-01 21 10906987 10906987 C T TPTE Missense_Mutation p.R525K 0.10 tolerated(1) benign(0) TCGA-ND-A4WC-01 21 10908881 10908881 G T TPTE Nonsense_Mutation p.Y488* 0.21 TCGA-ND-A4WC-01 21 10920137 10920137 G A TPTE Nonsense_Mutation p.R373* 0.14 TCGA-ND-A4WC-01 21 10942994 10942994 C T TPTE Missense_Mutation p.R198Q 0.12 deleterious(0.01) probably_damaging(0.937) TCGA-ND-A4WC-01 21 11039094 11039094 C A BAGE2 RNA 0.06 TCGA-ND-A4WC-01 21 11039109 11039109 C A BAGE2 RNA 0.06 TCGA-ND-A4WC-01 21 15561492 15561492 T C LIPI Missense_Mutation p.I120V 0.29 tolerated(0.35) benign(0.005) TCGA-ND-A4WC-01 21 16337987 16337987 C A NRIP1 Nonsense_Mutation p.E843* 0.41 TCGA-ND-A4WC-01 21 16339938 16339938 A G NRIP1 Silent p.S192S 0.36 TCGA-ND-A4WC-01 21 17191113 17191113 A G USP25 Missense_Mutation p.E343G 0.37 deleterious(0) possibly_damaging(0.728) TCGA-ND-A4WC-01 21 17214759 17214759 G T USP25 Missense_Mutation p.R746I 0.29 tolerated(0.07) benign(0.093) TCGA-ND-A4WC-01 21 17250144 17250144 C T USP25 Silent p.F943F 0.41 TCGA-ND-A4WC-01 21 17250772 17250772 G A USP25 Missense_Mutation p.R1049Q 0.37 tolerated(0.2) probably_damaging(0.96) TCGA-ND-A4WC-01 21 19628962 19628962 G T CHODL Missense_Mutation p.E72D 0.11 deleterious(0.01) benign(0.287) TCGA-ND-A4WC-01 21 19775932 19775932 G T TMPRSS15 Nonsense_Mutation p.S3* 0.17 TCGA-ND-A4WC-01 21 22790860 22790860 G T NCAM2 Missense_Mutation p.R484I 0.36 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 21 26978793 26978793 T G MRPL39 Missense_Mutation p.K83T 0.29 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 21 27347537 27347537 A G APP Missense_Mutation p.F435S 0.30 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 21 28212196 28212196 T A ADAMTS1 Missense_Mutation p.N617I 0.30 deleterious(0.02) benign(0.439) TCGA-ND-A4WC-01 21 30248814 30248814 C A N6AMT1 Splice_Site p.X180_splice 0.46 TCGA-ND-A4WC-01 21 30358482 30358482 C A LTN1 Missense_Mutation p.R154I 0.45 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 21 30380935 30380935 G A RWDD2B Silent p.Y25Y 0.41 TCGA-ND-A4WC-01 21 30403021 30403021 A C USP16 Missense_Mutation p.K56T 0.21 tolerated(0.06) probably_damaging(0.928) TCGA-ND-A4WC-01 21 31654400 31654400 G A KRTAP24-1 3'UTR 0.38 TCGA-ND-A4WC-01 21 31864143 31864143 C A KRTAP19-3 Nonsense_Mutation p.G45* 0.37 TCGA-ND-A4WC-01 21 31971111 31971111 C T KRTAP6-2 Missense_Mutation p.G28E 0.35 unknown(0) TCGA-ND-A4WC-01 21 32119291 32119291 C A KRTAP21-2 Missense_Mutation p.R77I 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-ND-A4WC-01 21 32638913 32638913 T G TIAM1 Missense_Mutation p.M126L 0.41 tolerated_low_confidence(1) benign(0.003) TCGA-ND-A4WC-01 21 33346944 33346944 T C HUNK Missense_Mutation p.I363T 0.15 tolerated(0.07) benign(0.394) TCGA-ND-A4WC-01 21 33829907 33829907 G T EVA1C Missense_Mutation p.K120N 0.42 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 21 33949164 33949164 G T TCP10L Missense_Mutation p.L190I 0.37 tolerated(0.55) benign(0.275) TCGA-ND-A4WC-01 21 34003475 34003475 A C SYNJ1 Missense_Mutation p.L1557V 0.19 tolerated_low_confidence(0.11) benign(0.06) TCGA-ND-A4WC-01 21 34045776 34045776 G A SYNJ1 Nonsense_Mutation p.R573* 0.33 TCGA-ND-A4WC-01 21 34166104 34166104 T C C21orf62 Missense_Mutation p.N210S 0.34 deleterious(0.04) benign(0.389) TCGA-ND-A4WC-01 21 34921873 34921873 A C SON Missense_Mutation p.K112N 0.35 benign(0.403) TCGA-ND-A4WC-01 21 34927011 34927011 G A SON Missense_Mutation p.R1825Q 0.34 unknown(0) TCGA-ND-A4WC-01 21 34932610 34932610 A C SON Intron 0.25 TCGA-ND-A4WC-01 21 34948145 34948145 A G SON Silent p.E2389E 0.50 TCGA-ND-A4WC-01 21 36259341 36259341 G C RUNX1 Silent p.G50G 0.33 TCGA-ND-A4WC-01 21 37431146 37431146 C T SETD4 Missense_Mutation p.R14Q 0.28 tolerated(0.1) benign(0.067) TCGA-ND-A4WC-01 21 37626108 37626108 C T DOPEY2 Silent p.V1720V 0.35 TCGA-ND-A4WC-01 21 38437836 38437836 A G PIGP 3'UTR 0.29 TCGA-ND-A4WC-01 21 38538603 38538603 A C TTC3 Silent p.R1363R 0.37 TCGA-ND-A4WC-01 21 39775498 39775498 G A ERG Silent p.D181D 0.37 TCGA-ND-A4WC-01 21 40636553 40636553 T G BRWD1 Missense_Mutation p.N573T 0.17 deleterious(0) probably_damaging(0.968) TCGA-ND-A4WC-01 21 40670342 40670342 C A BRWD1 Intron 0.36 TCGA-ND-A4WC-01 21 41151135 41151135 G A IGSF5 Silent p.P279P 0.38 TCGA-ND-A4WC-01 21 41151230 41151230 G T IGSF5 Missense_Mutation p.R311I 0.24 deleterious(0.03) benign(0.047) TCGA-ND-A4WC-01 21 41447035 41447035 A G DSCAM Missense_Mutation p.V1606A 0.43 tolerated(0.94) benign(0.001) TCGA-ND-A4WC-01 21 41559882 41559882 G T DSCAM Missense_Mutation p.F862L 0.38 tolerated(0.07) possibly_damaging(0.656) TCGA-ND-A4WC-01 21 41710160 41710160 C T DSCAM Missense_Mutation p.V551M 0.27 tolerated(0.12) possibly_damaging(0.507) TCGA-ND-A4WC-01 21 42720602 42720602 T G FAM3B Missense_Mutation p.F190C 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 21 43412056 43412056 C T ZBTB21 Missense_Mutation p.E717K 0.35 tolerated(0.79) benign(0.003) TCGA-ND-A4WC-01 21 43846924 43846924 T C UBASH3A Silent p.L389L 0.16 TCGA-ND-A4WC-01 21 43862683 43862683 T G UBASH3A Missense_Mutation p.N536K 0.37 tolerated(0.1) benign(0.008) TCGA-ND-A4WC-01 21 44152236 44152236 T C PDE9A Splice_Site p.X166_splice 0.27 TCGA-ND-A4WC-01 21 44270123 44270123 C A WDR4 3'UTR 0.36 TCGA-ND-A4WC-01 21 45107839 45107839 A G RRP1B Silent p.G528G 0.46 TCGA-ND-A4WC-01 21 45658337 45658337 G A ICOSLG Nonsense_Mutation p.R17* 0.12 TCGA-ND-A4WC-01 21 45819213 45819213 G T TRPM2 Missense_Mutation p.E699D 0.27 tolerated(0.05) benign(0.053) TCGA-ND-A4WC-01 21 45949728 45949728 G T TSPEAR Missense_Mutation p.A248D 0.25 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 21 47536586 47536586 C T COL6A2 Missense_Mutation p.R317C 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 21 47545863 47545863 G A COL6A2 Missense_Mutation p.D712N 0.38 tolerated(0.63) benign(0.005) TCGA-ND-A4WC-01 21 47674319 47674319 C T MCM3AP Missense_Mutation p.E1375K 0.31 tolerated(0.48) benign(0.014) TCGA-ND-A4WC-01 21 47705107 47705107 G A MCM3AP Nonsense_Mutation p.R32* 0.29 TCGA-ND-A4WC-01 21 47773050 47773050 C T PCNT Missense_Mutation p.R497C 0.32 benign(0.01) TCGA-ND-A4WC-01 21 47967015 47967015 C A DIP2A Intron 0.44 TCGA-ND-A4WC-01 22 18064149 18064149 C T SLC25A18 Missense_Mutation p.R57W 0.31 deleterious(0) probably_damaging(0.967) TCGA-ND-A4WC-01 22 19203720 19203720 G A CLTCL1 Missense_Mutation p.S989L 0.47 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 22 19241726 19241726 T G CLTCL1 Missense_Mutation p.N92T 0.42 deleterious(0) possibly_damaging(0.553) TCGA-ND-A4WC-01 22 19423164 19423164 G A MRPL40 Silent p.E100E 0.11 TCGA-ND-A4WC-01 22 19751728 19751728 C T TBX1 Missense_Mutation p.A188V 0.32 tolerated(0.08) probably_damaging(0.923) TCGA-ND-A4WC-01 22 20074084 20074084 G A DGCR8 Missense_Mutation p.D200N 0.31 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 22 21072993 21072993 G A PI4KA Missense_Mutation p.S1745L 0.36 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 22 21331227 21331227 G A AIFM3 Silent p.K406K 0.30 TCGA-ND-A4WC-01 22 21344752 21344752 C A LZTR1 Missense_Mutation p.F243L 0.33 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 22 21385316 21385316 C A SLC7A4 Missense_Mutation p.Q262H 0.38 deleterious(0.01) possibly_damaging(0.811) TCGA-ND-A4WC-01 22 22024873 22024873 T G PPIL2 Missense_Mutation p.F34C 0.37 deleterious(0) probably_damaging(0.931) TCGA-ND-A4WC-01 22 22658450 22658450 C A BMS1P20 RNA 0.33 TCGA-ND-A4WC-01 22 22869151 22869151 C A ZNF280A Missense_Mutation p.K268N 0.35 tolerated(0.06) benign(0.045) TCGA-ND-A4WC-01 22 22869289 22869289 A G ZNF280A Silent p.N222N 0.33 TCGA-ND-A4WC-01 22 23047257 23047257 G A IGLV3-22 Missense_Mutation p.E99K 0.25 tolerated(0.08) benign(0.109) TCGA-ND-A4WC-01 22 23063591 23063591 G T IGLV3-19 Missense_Mutation p.D100Y 0.29 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 22 24124645 24124645 C T AP000349.1 Missense_Mutation p.D192N 0.33 unknown(0) TCGA-ND-A4WC-01 22 24313580 24313580 C A DDTL Missense_Mutation p.F130L 0.35 deleterious_low_confidence(0) benign(0.153) TCGA-ND-A4WC-01 22 24323182 24323182 G A GSTT2 Silent p.G52G 0.23 TCGA-ND-A4WC-01 22 24579121 24579121 T G SUSD2 Missense_Mutation p.F58C 0.15 deleterious(0) probably_damaging(0.95) TCGA-ND-A4WC-01 22 24911222 24911222 C T UPB1 Silent p.F225F 0.37 TCGA-ND-A4WC-01 22 24911325 24911325 A G UPB1 Missense_Mutation p.I260V 0.33 tolerated(1) benign(0) TCGA-ND-A4WC-01 22 25150111 25150111 C T PIWIL3 Missense_Mutation p.D283N 0.35 deleterious(0.04) probably_damaging(0.986) TCGA-ND-A4WC-01 22 25152504 25152504 A G PIWIL3 Missense_Mutation p.I175T 0.32 tolerated(0.43) possibly_damaging(0.879) TCGA-ND-A4WC-01 22 26000402 26000402 A C ADRBK2 Missense_Mutation p.I58L 0.33 tolerated(0.07) possibly_damaging(0.492) TCGA-ND-A4WC-01 22 26343735 26343735 G A MYO18B Missense_Mutation p.D1897N 0.40 deleterious(0) possibly_damaging(0.787) TCGA-ND-A4WC-01 22 26400763 26400763 G T MYO18B Missense_Mutation p.D2138Y 0.08 deleterious(0) probably_damaging(0.957) TCGA-ND-A4WC-01 22 26868837 26868837 G T HPS4 Missense_Mutation p.F115L 0.36 tolerated(1) benign(0.008) TCGA-ND-A4WC-01 22 29091232 29091232 T G CHEK2 Splice_Site p.X463_splice 0.41 TCGA-ND-A4WC-01 22 29833764 29833764 G A RFPL1 5'Flank 0.53 TCGA-ND-A4WC-01 22 29915099 29915099 A C THOC5 Missense_Mutation p.I462S 0.33 tolerated(0.79) benign(0.01) TCGA-ND-A4WC-01 22 31829935 31829935 T C DRG1 Missense_Mutation p.V361A 0.33 deleterious(0) probably_damaging(0.946) TCGA-ND-A4WC-01 22 32289731 32289731 C T DEPDC5 Silent p.F1390F 0.43 TCGA-ND-A4WC-01 22 32651209 32651209 A C SLC5A4 Missense_Mutation p.F36L 0.38 tolerated(0.07) benign(0.098) TCGA-ND-A4WC-01 22 32754065 32754065 A C RFPL3 Silent p.R3R 0.32 TCGA-ND-A4WC-01 22 32811907 32811907 G T BPIFC Missense_Mutation p.L466I 0.50 tolerated(0.41) benign(0.403) TCGA-ND-A4WC-01 22 32831749 32831749 G T BPIFC Missense_Mutation p.S289Y 0.16 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 22 32894360 32894360 C T FBXO7 Missense_Mutation p.T471M 0.31 tolerated(0.18) benign(0.075) TCGA-ND-A4WC-01 22 35661203 35661203 C T HMGXB4 Silent p.F274F 0.33 TCGA-ND-A4WC-01 22 35789662 35789662 C A HMOX1 3'UTR 0.26 TCGA-ND-A4WC-01 22 35815913 35815913 G T MCM5 Missense_Mutation p.E580D 0.27 tolerated(0.07) benign(0.026) TCGA-ND-A4WC-01 22 36685180 36685180 C T MYH9 Missense_Mutation p.R1503H 0.31 possibly_damaging(0.735) TCGA-ND-A4WC-01 22 37397962 37397962 C T TEX33 Silent p.T135T 0.52 TCGA-ND-A4WC-01 22 38039669 38039669 G T SH3BP1 Missense_Mutation p.K164N 0.13 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 22 38329085 38329085 C T MICALL1 Silent p.V758V 0.38 TCGA-ND-A4WC-01 22 39262755 39262755 G A CBX6 Missense_Mutation p.A233V 0.33 deleterious(0.03) benign(0.012) TCGA-ND-A4WC-01 22 39441500 39441500 C T APOBEC3F Silent p.F173F 0.33 TCGA-ND-A4WC-01 22 41222622 41222622 T C ST13 Missense_Mutation p.N344D 0.40 deleterious(0) possibly_damaging(0.638) TCGA-ND-A4WC-01 22 42141899 42141899 G T MEI1 Nonsense_Mutation p.E517* 0.19 TCGA-ND-A4WC-01 22 42273340 42273340 T G SREBF2 Silent p.T498T 0.08 TCGA-ND-A4WC-01 22 42377819 42377819 G A SEPT3 Missense_Mutation p.D61N 0.45 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 22 43608571 43608571 G A SCUBE1 Missense_Mutation p.A694V 0.25 tolerated(0.68) benign(0.005) TCGA-ND-A4WC-01 22 46627934 46627934 C T PPARA Silent p.A319A 0.49 TCGA-ND-A4WC-01 22 47287219 47287219 G T TBC1D22A Nonsense_Mutation p.E256* 0.35 TCGA-ND-A4WC-01 22 50191483 50191483 C T BRD1 Missense_Mutation p.A690T 0.54 tolerated(0.15) benign(0.017) TCGA-ND-A4WC-01 22 50664759 50664759 G A TUBGCP6 Silent p.G550G 0.54 TCGA-ND-A4WC-01 22 51008020 51008020 G T CPT1B Missense_Mutation p.F740L 0.55 tolerated(0.64) benign(0.005) TCGA-ND-A4WC-01 2 100019523 100019523 C A REV1 Missense_Mutation p.K1071N 0.30 tolerated(0.13) probably_damaging(0.988) TCGA-ND-A4WC-01 2 100199424 100199424 G A AFF3 Missense_Mutation p.R902W 0.35 deleterious(0.03) benign(0.055) TCGA-ND-A4WC-01 2 100210589 100210589 C T AFF3 Missense_Mutation p.D537N 0.33 tolerated(0.49) benign(0.027) TCGA-ND-A4WC-01 2 100917219 100917219 C T LONRF2 Missense_Mutation p.A318T 0.29 tolerated(0.22) benign(0.002) TCGA-ND-A4WC-01 2 101010188 101010188 G A CHST10 Missense_Mutation p.S197F 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 10104055 10104055 C T GRHL1 Nonsense_Mutation p.R263* 0.28 TCGA-ND-A4WC-01 2 101612062 101612062 C T NPAS2 3'UTR 0.42 TCGA-ND-A4WC-01 2 102626170 102626170 A C IL1R2 Missense_Mutation p.N72H 0.38 deleterious(0) probably_damaging(0.973) TCGA-ND-A4WC-01 2 103121726 103121726 G A SLC9A4 Missense_Mutation p.A332T 0.29 deleterious(0.02) probably_damaging(0.97) TCGA-ND-A4WC-01 2 103141567 103141567 T G SLC9A4 Missense_Mutation p.L635V 0.41 deleterious(0.03) benign(0.009) TCGA-ND-A4WC-01 2 10582167 10582167 A C ODC1 Missense_Mutation p.I295S 0.12 tolerated(0.53) benign(0.02) TCGA-ND-A4WC-01 2 105883802 105883802 G T TGFBRAP1 3'UTR 0.44 TCGA-ND-A4WC-01 2 106002940 106002940 C T FHL2 Missense_Mutation p.E12K 0.27 tolerated(0.3) benign(0.001) TCGA-ND-A4WC-01 2 106713223 106713223 C A UXS1 Missense_Mutation p.R366I 0.33 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 10712246 10712246 G A NOL10 Missense_Mutation p.S673L 0.40 deleterious(0.03) benign(0.318) TCGA-ND-A4WC-01 2 10729370 10729370 G A NOL10 Missense_Mutation p.S548L 0.28 tolerated(0.06) possibly_damaging(0.684) TCGA-ND-A4WC-01 2 108614432 108614432 T G SLC5A7 Missense_Mutation p.F196C 0.33 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 2 108921632 108921632 T G SULT1C2 Silent p.V180V 0.39 TCGA-ND-A4WC-01 2 109086776 109086776 A C GCC2 Missense_Mutation p.N331H 0.31 tolerated(0.05) possibly_damaging(0.554) TCGA-ND-A4WC-01 2 109098819 109098819 A G GCC2 Missense_Mutation p.E1086G 0.36 deleterious(0) benign(0.251) TCGA-ND-A4WC-01 2 109381241 109381241 G A RANBP2 Missense_Mutation p.E1416K 0.31 tolerated(0.19) possibly_damaging(0.615) TCGA-ND-A4WC-01 2 109513452 109513452 G A EDAR Missense_Mutation p.R420W 0.38 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 110373597 110373597 G A SOWAHC Missense_Mutation p.G511S 0.21 tolerated(0.48) benign(0.042) TCGA-ND-A4WC-01 2 110881402 110881402 T C NPHP1 Missense_Mutation p.D723G 0.19 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 112621315 112621315 C T ANAPC1 Missense_Mutation p.R330H 0.34 tolerated(0.11) possibly_damaging(0.834) TCGA-ND-A4WC-01 2 112779123 112779123 C A MERTK Missense_Mutation p.L772I 0.20 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 112991726 112991726 T G ZC3H8 Missense_Mutation p.K198Q 0.50 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 2 113079393 113079393 A C ZC3H6 Missense_Mutation p.K346T 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-ND-A4WC-01 2 113082687 113082687 G A ZC3H6 Missense_Mutation p.A667T 0.29 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 113127685 113127685 C A RGPD8 3'UTR 0.56 TCGA-ND-A4WC-01 2 113146680 113146680 A C RGPD8 Missense_Mutation p.L1281R 0.36 deleterious(0) possibly_damaging(0.701) TCGA-ND-A4WC-01 2 113308539 113308539 G A POLR1B Missense_Mutation p.R241Q 0.19 tolerated(0.27) benign(0.002) TCGA-ND-A4WC-01 2 113342115 113342115 C A CHCHD5 5'UTR 0.48 TCGA-ND-A4WC-01 2 11337450 11337450 G A ROCK2 Nonsense_Mutation p.R1102* 0.30 TCGA-ND-A4WC-01 2 113537171 113537171 T G IL1A Missense_Mutation p.K131T 0.36 tolerated(0.15) possibly_damaging(0.758) TCGA-ND-A4WC-01 2 113590973 113590973 G T IL1B Missense_Mutation p.F93L 0.40 tolerated(1) benign(0.002) TCGA-ND-A4WC-01 2 11364495 11364495 T G ROCK2 Missense_Mutation p.E320D 0.45 tolerated(0.42) benign(0.005) TCGA-ND-A4WC-01 2 113783740 113783740 T G IL36B Missense_Mutation p.N111H 0.26 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-ND-A4WC-01 2 113788717 113788717 T G IL36B Missense_Mutation p.K10T 0.16 tolerated_low_confidence(0.07) benign(0.041) TCGA-ND-A4WC-01 2 113940100 113940100 G A PSD4 Missense_Mutation p.D23N 0.30 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-ND-A4WC-01 2 116548868 116548868 C A DPP10 Missense_Mutation p.P550T 0.28 tolerated(0.22) benign(0.394) TCGA-ND-A4WC-01 2 116598356 116598356 T G DPP10 Nonsense_Mutation p.L742* 0.16 TCGA-ND-A4WC-01 2 118705682 118705682 C T CCDC93 Missense_Mutation p.R408Q 0.37 deleterious(0.01) benign(0.402) TCGA-ND-A4WC-01 2 118731517 118731517 C A CCDC93 Missense_Mutation p.E285D 0.43 deleterious(0.03) benign(0.011) TCGA-ND-A4WC-01 2 118864481 118864481 T C INSIG2 Splice_Site p.X179_splice 0.09 TCGA-ND-A4WC-01 2 121043504 121043504 C A RALB Missense_Mutation p.L57I 0.31 tolerated(0.76) benign(0.288) TCGA-ND-A4WC-01 2 121043521 121043521 T G RALB Silent p.V62V 0.28 TCGA-ND-A4WC-01 2 121736119 121736119 A G GLI2 Missense_Mutation p.H493R 0.12 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 2 121745903 121745903 C T GLI2 Missense_Mutation p.R805C 0.41 deleterious(0) probably_damaging(0.993) TCGA-ND-A4WC-01 2 122120867 122120867 G A CLASP1 Nonsense_Mutation p.R1363* 0.23 TCGA-ND-A4WC-01 2 1263164 1263164 G A SNTG2 Missense_Mutation p.R343Q 0.28 tolerated(0.23) benign(0.011) TCGA-ND-A4WC-01 2 127944730 127944730 T C CYP27C1 3'UTR 0.40 TCGA-ND-A4WC-01 2 128347738 128347738 A C MYO7B Missense_Mutation p.K642N 0.34 deleterious(0.02) probably_damaging(0.938) TCGA-ND-A4WC-01 2 128409436 128409436 C A GPR17 3'UTR 0.31 TCGA-ND-A4WC-01 2 128783864 128783864 C A SAP130 Missense_Mutation p.M27I 0.28 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-ND-A4WC-01 2 130951526 130951526 C T TUBA3E Missense_Mutation p.E297K 0.36 deleterious_low_confidence(0) benign(0.435) TCGA-ND-A4WC-01 2 131521461 131521461 C T AMER3 Nonsense_Mutation p.R606* 0.40 TCGA-ND-A4WC-01 2 132020932 132020932 C A POTEE Missense_Mutation p.S635Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-ND-A4WC-01 2 133402871 133402871 C T GPR39 Missense_Mutation p.R352W 0.29 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 133547778 133547778 C T NCKAP5 Missense_Mutation p.E304K 0.20 deleterious(0.01) benign(0.076) TCGA-ND-A4WC-01 2 135099273 135099273 C A MGAT5 Missense_Mutation p.S307Y 0.14 deleterious(0) possibly_damaging(0.807) TCGA-ND-A4WC-01 2 135965024 135965024 A G ZRANB3 Missense_Mutation p.S997P 0.10 deleterious(0.01) possibly_damaging(0.812) TCGA-ND-A4WC-01 2 135988495 135988495 G A ZRANB3 Silent p.F514F 0.50 TCGA-ND-A4WC-01 2 136598517 136598517 T C MCM6 Missense_Mutation p.H785R 0.40 tolerated(0.18) benign(0.001) TCGA-ND-A4WC-01 2 136673886 136673886 A C DARS Missense_Mutation p.F339C 0.08 deleterious(0.03) probably_damaging(0.991) TCGA-ND-A4WC-01 2 141081612 141081612 C T LRP1B Missense_Mutation p.D4122N 0.32 possibly_damaging(0.555) TCGA-ND-A4WC-01 2 141128753 141128753 C A LRP1B Missense_Mutation p.D3624Y 0.42 probably_damaging(0.961) TCGA-ND-A4WC-01 2 141298598 141298598 C A LRP1B Missense_Mutation p.R2486I 0.33 benign(0.308) TCGA-ND-A4WC-01 2 141607716 141607716 G A LRP1B Nonsense_Mutation p.R1632* 0.41 TCGA-ND-A4WC-01 2 141641477 141641477 C T LRP1B Missense_Mutation p.E1360K 0.38 benign(0.009) TCGA-ND-A4WC-01 2 143798010 143798010 C T KYNU Missense_Mutation p.A352V 0.36 tolerated(0.12) benign(0.065) TCGA-ND-A4WC-01 2 149220204 149220204 C T MBD5 Missense_Mutation p.T56I 0.21 deleterious(0) unknown(0) TCGA-ND-A4WC-01 2 149226980 149226980 C T MBD5 Missense_Mutation p.P490S 0.14 tolerated(0.21) possibly_damaging(0.803) TCGA-ND-A4WC-01 2 149679780 149679780 G A KIF5C Silent p.A67A 0.43 TCGA-ND-A4WC-01 2 149793854 149793854 C A KIF5C Silent p.I116I 0.33 TCGA-ND-A4WC-01 2 149818500 149818500 G T KIF5C Missense_Mutation p.K328N 0.40 deleterious(0) possibly_damaging(0.823) TCGA-ND-A4WC-01 2 152107545 152107545 T G RBM43 Missense_Mutation p.S317R 0.31 tolerated(0.59) benign(0.009) TCGA-ND-A4WC-01 2 152107614 152107614 C A RBM43 Nonsense_Mutation p.E294* 0.38 TCGA-ND-A4WC-01 2 152273332 152273332 A C RIF1 Silent p.I140I 0.43 TCGA-ND-A4WC-01 2 152303026 152303026 G T RIF1 Missense_Mutation p.E727D 0.32 tolerated(0.07) benign(0.196) TCGA-ND-A4WC-01 2 152320659 152320659 C A RIF1 Missense_Mutation p.S1542Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 152325056 152325056 G T RIF1 Missense_Mutation p.K2272N 0.11 deleterious(0) probably_damaging(0.942) TCGA-ND-A4WC-01 2 152534175 152534175 C A NEB Missense_Mutation p.K1226N 0.33 benign(0.114) TCGA-ND-A4WC-01 2 152554096 152554096 A G NEB Missense_Mutation p.F407L 0.40 possibly_damaging(0.755) TCGA-ND-A4WC-01 2 152574022 152574022 T G NEB Missense_Mutation p.K244Q 0.17 probably_damaging(1) TCGA-ND-A4WC-01 2 152695763 152695763 G T CACNB4 Missense_Mutation p.S478Y 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ND-A4WC-01 2 152739811 152739811 C T CACNB4 Missense_Mutation p.R74Q 0.26 deleterious(0.04) possibly_damaging(0.762) TCGA-ND-A4WC-01 2 153497338 153497338 G A FMNL2 Missense_Mutation p.E1027K 0.36 possibly_damaging(0.486) TCGA-ND-A4WC-01 2 155306999 155306999 T G GALNT13 Missense_Mutation p.M536R 0.28 deleterious(0.02) possibly_damaging(0.507) TCGA-ND-A4WC-01 2 15555741 15555741 C A NBAS Nonsense_Mutation p.E956* 0.36 TCGA-ND-A4WC-01 2 158142583 158142583 C A GALNT5 Missense_Mutation p.L560I 0.31 tolerated(0.17) possibly_damaging(0.823) TCGA-ND-A4WC-01 2 160112755 160112755 C A WDSUB1 Nonsense_Mutation p.E362* 0.27 TCGA-ND-A4WC-01 2 160289317 160289317 T G BAZ2B Missense_Mutation p.E617D 0.33 benign(0.217) TCGA-ND-A4WC-01 2 160637474 160637474 T G LY75-CD302 Missense_Mutation p.N1713H 0.37 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 163076364 163076364 A G FAP Missense_Mutation p.L162S 0.27 deleterious(0) probably_damaging(0.973) TCGA-ND-A4WC-01 2 163228277 163228277 G T KCNH7 3'UTR 0.55 TCGA-ND-A4WC-01 2 163374665 163374665 T G KCNH7 Missense_Mutation p.K156T 0.37 tolerated(0.08) benign(0.027) TCGA-ND-A4WC-01 2 165551180 165551180 T C COBLL1 Missense_Mutation p.M946V 0.30 tolerated(0.38) benign(0.001) TCGA-ND-A4WC-01 2 165551579 165551579 C A COBLL1 Nonsense_Mutation p.E813* 0.38 TCGA-ND-A4WC-01 2 166020945 166020945 G A SCN3A Missense_Mutation p.R187C 0.26 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 2 166165696 166165696 C T SCN2A Silent p.N209N 0.19 TCGA-ND-A4WC-01 2 166848303 166848303 A C SCN1A Missense_Mutation p.L1828V 0.38 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 166866290 166866290 G T SCN1A Missense_Mutation p.S1314Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 166897798 166897798 G T SCN1A Silent p.A786A 0.30 TCGA-ND-A4WC-01 2 166911148 166911148 G A SCN1A Missense_Mutation p.A201V 0.26 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 167056352 167056352 A C SCN9A Missense_Mutation p.I1588M 0.10 deleterious(0.02) probably_damaging(1) TCGA-ND-A4WC-01 2 167149755 167149755 T G SCN9A Missense_Mutation p.N365H 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 2 167284347 167284347 C A SCN7A Missense_Mutation p.W935L 0.48 deleterious(0.01) benign(0.038) TCGA-ND-A4WC-01 2 16740730 16740730 C T FAM49A Missense_Mutation p.D279N 0.45 tolerated(0.23) benign(0.073) TCGA-ND-A4WC-01 2 168099780 168099780 C T XIRP2 Silent p.I626I 0.14 TCGA-ND-A4WC-01 2 168101562 168101563 - A XIRP2 Frame_Shift_Ins p.I1223Dfs*7 0.19 TCGA-ND-A4WC-01 2 168102751 168102751 G A XIRP2 Missense_Mutation p.D1617N 0.35 benign(0.159) TCGA-ND-A4WC-01 2 168103196 168103196 C A XIRP2 Nonsense_Mutation p.S1765* 0.36 TCGA-ND-A4WC-01 2 168103954 168103954 C A XIRP2 Missense_Mutation p.L2018I 0.33 benign(0.178) TCGA-ND-A4WC-01 2 168106676 168106676 C A XIRP2 Missense_Mutation p.S2925Y 0.35 possibly_damaging(0.767) TCGA-ND-A4WC-01 2 168107532 168107532 G A XIRP2 Silent p.K3210K 0.35 TCGA-ND-A4WC-01 2 168114449 168114449 G T XIRP2 3'UTR 0.46 TCGA-ND-A4WC-01 2 169828434 169828434 C A ABCB11 Nonsense_Mutation p.E521* 0.25 TCGA-ND-A4WC-01 2 170002290 170002290 G A LRP2 Nonsense_Mutation p.R4319* 0.12 TCGA-ND-A4WC-01 2 170042459 170042459 G T LRP2 Missense_Mutation p.F3133L 0.46 probably_damaging(0.968) TCGA-ND-A4WC-01 2 170063458 170063458 T G LRP2 Missense_Mutation p.I2258L 0.34 possibly_damaging(0.468) TCGA-ND-A4WC-01 2 170081836 170081836 C A LRP2 Missense_Mutation p.R1841I 0.21 benign(0.027) TCGA-ND-A4WC-01 2 170094769 170094769 A C LRP2 Missense_Mutation p.I1446M 0.28 possibly_damaging(0.835) TCGA-ND-A4WC-01 2 170135978 170135978 C T LRP2 Missense_Mutation p.R490H 0.41 probably_damaging(0.982) TCGA-ND-A4WC-01 2 170367292 170367292 G T KLHL41 Missense_Mutation p.R335I 0.35 deleterious(0) possibly_damaging(0.52) TCGA-ND-A4WC-01 2 170377387 170377387 G A KLHL41 Missense_Mutation p.E527K 0.31 tolerated(0.13) benign(0.153) TCGA-ND-A4WC-01 2 170487452 170487452 G A PPIG Missense_Mutation p.R239Q 0.41 tolerated(0.24) unknown(0) TCGA-ND-A4WC-01 2 170557600 170557600 G A PHOSPHO2 Missense_Mutation p.R40Q 0.40 tolerated(0.56) benign(0.01) TCGA-ND-A4WC-01 2 170591663 170591663 A C KLHL23 Missense_Mutation p.I47L 0.37 tolerated(0.39) benign(0.003) TCGA-ND-A4WC-01 2 170843295 170843295 G A UBR3 Missense_Mutation p.A1259T 0.46 deleterious(0) possibly_damaging(0.502) TCGA-ND-A4WC-01 2 171248036 171248036 G T MYO3B Missense_Mutation p.E528D 0.47 deleterious(0) probably_damaging(0.962) TCGA-ND-A4WC-01 2 171573092 171573092 C A SP5 Missense_Mutation p.F125L 0.21 tolerated(0.93) benign(0.153) TCGA-ND-A4WC-01 2 171675046 171675046 C A GAD1 5'UTR 0.39 TCGA-ND-A4WC-01 2 171715386 171715386 C T GAD1 Missense_Mutation p.R532W 0.25 tolerated(0.19) benign(0.438) TCGA-ND-A4WC-01 2 172848347 172848347 A C HAT1 3'UTR 0.36 TCGA-ND-A4WC-01 2 173866010 173866010 C T RAPGEF4 Silent p.D532D 0.21 TCGA-ND-A4WC-01 2 174943759 174943759 G T OLA1 Missense_Mutation p.F342L 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 2 174987962 174987963 - T OLA1 Frame_Shift_Ins p.M225Nfs*6 0.32 TCGA-ND-A4WC-01 2 175215392 175215392 G A CIR1 Missense_Mutation p.L225F 0.24 deleterious(0.02) unknown(0) TCGA-ND-A4WC-01 2 175265748 175265748 A G SCRN3 Silent p.E124E 0.50 TCGA-ND-A4WC-01 2 175289296 175289296 G T SCRN3 Missense_Mutation p.K337N 0.24 tolerated(0.08) benign(0.258) TCGA-ND-A4WC-01 2 175306891 175306891 G T GPR155 Silent p.I710I 0.20 TCGA-ND-A4WC-01 2 175618129 175618129 C T CHRNA1 Intron 0.37 TCGA-ND-A4WC-01 2 175622306 175622306 A G CHRNA1 Missense_Mutation p.V136A 0.29 deleterious(0) benign(0.371) TCGA-ND-A4WC-01 2 175664856 175664856 G T CHN1 Missense_Mutation p.D456E 0.26 tolerated(0.1) benign(0.001) TCGA-ND-A4WC-01 2 176804319 176804319 C A KIAA1715 Missense_Mutation p.R258I 0.31 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 2 176959355 176959355 C T HOXD13 Missense_Mutation p.S310L 0.29 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 2 178740621 178740621 C A PDE11A Missense_Mutation p.L444F 0.32 tolerated(0.26) probably_damaging(0.954) TCGA-ND-A4WC-01 2 178936534 178936534 C A PDE11A Missense_Mutation p.D211Y 0.35 deleterious(0) possibly_damaging(0.67) TCGA-ND-A4WC-01 2 179248854 179248854 C A OSBPL6 Missense_Mutation p.T680N 0.31 deleterious(0) possibly_damaging(0.897) TCGA-ND-A4WC-01 2 179253834 179253834 G T OSBPL6 Missense_Mutation p.R777I 0.38 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 179399554 179399554 A C TTN Missense_Mutation p.L33930V 0.28 TCGA-ND-A4WC-01 2 179407401 179407401 C A TTN Missense_Mutation p.V32394F 0.32 TCGA-ND-A4WC-01 2 179441428 179441428 C A TTN Missense_Mutation p.K23181N 0.37 TCGA-ND-A4WC-01 2 179444820 179444820 C T TTN Silent p.R22398R 0.38 TCGA-ND-A4WC-01 2 179457181 179457181 C T TTN Missense_Mutation p.D19851N 0.31 TCGA-ND-A4WC-01 2 179464378 179464378 A G TTN Silent p.V18750V 0.36 TCGA-ND-A4WC-01 2 179466399 179466399 C T TTN Missense_Mutation p.R18473K 0.29 TCGA-ND-A4WC-01 2 179478500 179478500 G A TTN Missense_Mutation p.P16504S 0.31 TCGA-ND-A4WC-01 2 179498763 179498763 C A TTN Nonsense_Mutation p.E14155* 0.32 TCGA-ND-A4WC-01 2 179517234 179517234 C A TTN Missense_Mutation p.K13026N 0.32 TCGA-ND-A4WC-01 2 179542573 179542573 C A TTN Nonsense_Mutation p.E11356* 0.37 TCGA-ND-A4WC-01 2 179565931 179565931 C T TTN Splice_Site p.X10200_splice 0.31 TCGA-ND-A4WC-01 2 179571456 179571456 C T TTN Silent p.A9715A 0.39 TCGA-ND-A4WC-01 2 179584511 179584511 C T TTN Missense_Mutation p.G7903E 0.36 TCGA-ND-A4WC-01 2 179585127 179585127 A G TTN Missense_Mutation p.S7788P 0.26 TCGA-ND-A4WC-01 2 179588843 179588843 C T TTN Missense_Mutation p.R7048Q 0.35 TCGA-ND-A4WC-01 2 179592343 179592343 G A TTN Silent p.S6654S 0.25 TCGA-ND-A4WC-01 2 179594290 179594290 G A TTN Missense_Mutation p.P6198L 0.28 TCGA-ND-A4WC-01 2 179595004 179595004 C A TTN Missense_Mutation p.M6041I 0.29 TCGA-ND-A4WC-01 2 179596285 179596285 G A TTN Silent p.I5736I 0.21 TCGA-ND-A4WC-01 2 179596486 179596486 C T TTN Missense_Mutation p.E5706K 0.31 TCGA-ND-A4WC-01 2 179600640 179600640 C T TTN Missense_Mutation p.D4845N 0.25 TCGA-ND-A4WC-01 2 179604701 179604701 C A TTN Missense_Mutation p.R4420I 0.41 TCGA-ND-A4WC-01 2 179605938 179605938 G A TTN Missense_Mutation p.L4008F 0.30 TCGA-ND-A4WC-01 2 179613073 179613073 C T TTN Intron 0.36 TCGA-ND-A4WC-01 2 179629268 179629268 G T TTN Nonsense_Mutation p.S3325* 0.31 TCGA-ND-A4WC-01 2 179631267 179631267 C A TTN Missense_Mutation p.D3182Y 0.41 TCGA-ND-A4WC-01 2 179639177 179639177 C A TTN Nonsense_Mutation p.E2272* 0.42 TCGA-ND-A4WC-01 2 179640269 179640269 C T TTN Missense_Mutation p.E2108K 0.43 TCGA-ND-A4WC-01 2 179641838 179641838 T G TTN Intron 0.31 TCGA-ND-A4WC-01 2 179645959 179645959 C A TTN Nonsense_Mutation p.E1138* 0.19 TCGA-ND-A4WC-01 2 179654773 179654773 C T TTN Missense_Mutation p.D624N 0.40 TCGA-ND-A4WC-01 2 179664562 179664562 C T TTN Missense_Mutation p.R220Q 0.37 TCGA-ND-A4WC-01 2 180835565 180835565 C T CWC22 Missense_Mutation p.R320Q 0.38 deleterious(0) probably_damaging(0.951) TCGA-ND-A4WC-01 2 180838374 180838374 C T CWC22 Missense_Mutation p.R246Q 0.32 deleterious(0.02) possibly_damaging(0.701) TCGA-ND-A4WC-01 2 182339888 182339888 T G ITGA4 Silent p.T143T 0.14 TCGA-ND-A4WC-01 2 182339943 182339943 A G ITGA4 Missense_Mutation p.T162A 0.37 tolerated(0.11) benign(0.002) TCGA-ND-A4WC-01 2 182350655 182350655 A G ITGA4 Silent p.K363K 0.36 TCGA-ND-A4WC-01 2 182350666 182350666 G A ITGA4 Missense_Mutation p.R367K 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 2 182412416 182412416 G A CERKL Silent p.F425F 0.33 TCGA-ND-A4WC-01 2 182767184 182767184 A C SSFA2 Missense_Mutation p.E468D 0.44 tolerated(0.2) probably_damaging(0.997) TCGA-ND-A4WC-01 2 183051307 183051307 C T PDE1A Missense_Mutation p.D422N 0.16 deleterious(0.01) possibly_damaging(0.84) TCGA-ND-A4WC-01 2 183070763 183070763 C T PDE1A Missense_Mutation p.R285H 0.38 deleterious(0.03) possibly_damaging(0.462) TCGA-ND-A4WC-01 2 183621136 183621136 C A DNAJC10 Missense_Mutation p.F583L 0.17 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 183621186 183621186 G T DNAJC10 Missense_Mutation p.R600I 0.40 deleterious(0) possibly_damaging(0.87) TCGA-ND-A4WC-01 2 183790427 183790427 A C NCKAP1 3'UTR 0.35 TCGA-ND-A4WC-01 2 183821229 183821229 C T NCKAP1 Missense_Mutation p.R711Q 0.39 tolerated(0.05) benign(0.295) TCGA-ND-A4WC-01 2 183845983 183845983 C A NCKAP1 Nonsense_Mutation p.E450* 0.34 TCGA-ND-A4WC-01 2 185798421 185798421 G A ZNF804A Missense_Mutation p.R116H 0.40 deleterious(0) probably_damaging(0.98) TCGA-ND-A4WC-01 2 186672466 186672466 G A FSIP2 Missense_Mutation p.E6234K 0.11 possibly_damaging(0.9) TCGA-ND-A4WC-01 2 18736896 18736896 G T RDH14 Missense_Mutation p.S191Y 0.11 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 2 187516777 187516777 A C ITGAV Missense_Mutation p.K489T 0.25 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 2 18764226 18764226 T C NT5C1B Missense_Mutation p.Y370C 0.20 deleterious(0) probably_damaging(0.923) TCGA-ND-A4WC-01 2 187702145 187702145 A C ZSWIM2 Missense_Mutation p.F211V 0.41 tolerated(0.11) benign(0.335) TCGA-ND-A4WC-01 2 188331683 188331683 T G TFPI Missense_Mutation p.I299L 0.33 deleterious(0.01) benign(0.015) TCGA-ND-A4WC-01 2 188343453 188343453 G T TFPI Intron 0.41 TCGA-ND-A4WC-01 2 188361697 188361697 C T TFPI Missense_Mutation p.R77Q 0.30 tolerated(0.84) benign(0.007) TCGA-ND-A4WC-01 2 189452618 189452618 T G GULP1 Missense_Mutation p.F262C 0.32 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 190554573 190554573 G T ANKAR Missense_Mutation p.D308Y 0.34 deleterious(0) possibly_damaging(0.629) TCGA-ND-A4WC-01 2 1906946 1906946 A G MYT1L Silent p.F644F 0.12 TCGA-ND-A4WC-01 2 190922365 190922365 C T MSTN Splice_Site p.X250_splice 0.24 TCGA-ND-A4WC-01 2 192225402 192225402 G T MYO1B Missense_Mutation p.R203I 0.28 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 196545041 196545041 G A SLC39A10 Missense_Mutation p.G92E 0.43 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 196722256 196722256 A G DNAH7 Silent p.H2753H 0.09 TCGA-ND-A4WC-01 2 196825183 196825183 C A DNAH7 Nonsense_Mutation p.E898* 0.29 TCGA-ND-A4WC-01 2 196834764 196834764 C A DNAH7 Nonsense_Mutation p.E705* 0.22 TCGA-ND-A4WC-01 2 196912086 196912086 T C DNAH7 Missense_Mutation p.N130D 0.20 tolerated(0.57) benign(0.002) TCGA-ND-A4WC-01 2 197002227 197002227 G A STK17B Missense_Mutation p.R355C 0.27 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 2 197183699 197183699 C T HECW2 Missense_Mutation p.E639K 0.28 tolerated_low_confidence(0.05) benign(0.022) TCGA-ND-A4WC-01 2 197208479 197208479 G T HECW2 Missense_Mutation p.S101Y 0.42 tolerated(0.08) possibly_damaging(0.716) TCGA-ND-A4WC-01 2 197639893 197639893 C T GTF3C3 Missense_Mutation p.R593K 0.32 tolerated(0.63) benign(0.003) TCGA-ND-A4WC-01 2 197954686 197954686 A G ANKRD44 Silent p.L366L 0.28 TCGA-ND-A4WC-01 2 198359410 198359411 - T HSPD1 Frame_Shift_Ins p.V193Sfs*17 0.28 TCGA-ND-A4WC-01 2 198950849 198950849 C T PLCL1 Missense_Mutation p.R870W 0.28 deleterious(0) probably_damaging(0.974) TCGA-ND-A4WC-01 2 200193516 200193516 G A SATB2 Missense_Mutation p.R431C 0.37 deleterious(0.05) possibly_damaging(0.891) TCGA-ND-A4WC-01 2 201434523 201434523 C T SGOL2 Missense_Mutation p.S204L 0.22 tolerated(1) benign(0) TCGA-ND-A4WC-01 2 201436810 201436810 T G SGOL2 Missense_Mutation p.L581V 0.31 tolerated(0.28) benign(0.386) TCGA-ND-A4WC-01 2 201437472 201437472 T G SGOL2 Missense_Mutation p.D801E 0.18 tolerated(1) benign(0.026) TCGA-ND-A4WC-01 2 20200270 20200270 C A MATN3 Missense_Mutation p.R367I 0.29 tolerated(0.18) possibly_damaging(0.451) TCGA-ND-A4WC-01 2 202025201 202025201 A T CFLAR Missense_Mutation p.K280N 0.35 tolerated(0.29) benign(0.001) TCGA-ND-A4WC-01 2 202131412 202131412 G A CASP8 Missense_Mutation p.R127Q 0.28 tolerated(0.09) benign(0.241) TCGA-ND-A4WC-01 2 202137360 202137360 G T CASP8 Splice_Site p.X197_splice 0.35 TCGA-ND-A4WC-01 2 202154232 202154232 C A ALS2CR12 Nonsense_Mutation p.E387* 0.28 TCGA-ND-A4WC-01 2 202257694 202257694 G A TRAK2 Missense_Mutation p.R351C 0.62 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 202263032 202263032 G A TRAK2 Nonsense_Mutation p.R176* 0.34 TCGA-ND-A4WC-01 2 20232942 20232942 T G LAPTM4A 3'UTR 0.29 TCGA-ND-A4WC-01 2 202510068 202510068 T C MPP4 Silent p.Q593Q 0.37 TCGA-ND-A4WC-01 2 202510091 202510091 T A MPP4 Nonsense_Mutation p.R586* 0.12 TCGA-ND-A4WC-01 2 203168188 203168188 G A NOP58 3'UTR 0.33 TCGA-ND-A4WC-01 2 203379620 203379620 A G BMPR2 Missense_Mutation p.K180R 0.42 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 2 203653775 203653775 C A ICA1L Nonsense_Mutation p.E341* 0.21 TCGA-ND-A4WC-01 2 204013739 204013739 G A NBEAL1 Missense_Mutation p.R1748Q 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-ND-A4WC-01 2 204154520 204154520 G A CYP20A1 Missense_Mutation p.R335Q 0.45 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 2 207024682 207024682 G A EEF1B2 5'UTR 0.35 TCGA-ND-A4WC-01 2 207170663 207170663 G T ZDBF2 Nonsense_Mutation p.E471* 0.28 TCGA-ND-A4WC-01 2 207173411 207173411 G T ZDBF2 Nonsense_Mutation p.E1387* 0.42 TCGA-ND-A4WC-01 2 207174556 207174556 G T ZDBF2 Missense_Mutation p.K1768N 0.32 tolerated(1) benign(0.403) TCGA-ND-A4WC-01 2 207414845 207414845 G T ADAM23 Missense_Mutation p.M298I 0.26 deleterious(0.01) benign(0.4) TCGA-ND-A4WC-01 2 207575305 207575305 C T DYTN Missense_Mutation p.E13K 0.60 deleterious(0.02) probably_damaging(1) TCGA-ND-A4WC-01 2 207827337 207827337 T C CPO Missense_Mutation p.M259T 0.39 deleterious(0) benign(0.266) TCGA-ND-A4WC-01 2 208477906 208477906 C T METTL21A Missense_Mutation p.R174Q 0.34 deleterious(0.04) probably_damaging(0.934) TCGA-ND-A4WC-01 2 208591568 208591568 C T CCNYL1 Nonsense_Mutation p.R100* 0.32 TCGA-ND-A4WC-01 2 209182661 209182661 A C PIKFYVE Missense_Mutation p.K693T 0.35 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 2 210557675 210557675 G T MAP2 Nonsense_Mutation p.E261* 0.29 TCGA-ND-A4WC-01 2 210560590 210560590 T G MAP2 Missense_Mutation p.I1232M 0.39 deleterious_low_confidence(0.01) benign(0.021) TCGA-ND-A4WC-01 2 210642253 210642253 T G UNC80 Missense_Mutation p.F190L 0.38 probably_damaging(0.943) TCGA-ND-A4WC-01 2 210940291 210940291 A C KANSL1L Missense_Mutation p.F580L 0.36 tolerated(0.34) benign(0.012) TCGA-ND-A4WC-01 2 211465360 211465360 C T CPS1 Missense_Mutation p.T550M 0.35 deleterious(0) possibly_damaging(0.755) TCGA-ND-A4WC-01 2 211469846 211469846 A G CPS1 Silent p.Q625Q 0.29 TCGA-ND-A4WC-01 2 21225596 21225596 G A APOB Missense_Mutation p.S4233L 0.28 benign(0.001) TCGA-ND-A4WC-01 2 21230633 21230633 G T APOB Missense_Mutation p.S3036Y 0.29 possibly_damaging(0.832) TCGA-ND-A4WC-01 2 213403311 213403311 C A ERBB4 5'UTR 0.41 TCGA-ND-A4WC-01 2 215632245 215632245 A G BARD1 Missense_Mutation p.V510A 0.28 tolerated(0.14) benign(0.405) TCGA-ND-A4WC-01 2 215868969 215868969 C T ABCA12 Missense_Mutation p.D883N 0.33 tolerated(0.43) possibly_damaging(0.578) TCGA-ND-A4WC-01 2 215884496 215884496 C T ABCA12 Missense_Mutation p.E438K 0.28 tolerated(0.92) benign(0.001) TCGA-ND-A4WC-01 2 216972416 216972416 G T XRCC5 5'UTR 0.19 TCGA-ND-A4WC-01 2 218858 218858 G A SH3YL1 Nonsense_Mutation p.R328* 0.39 TCGA-ND-A4WC-01 2 219296879 219296879 G A VIL1 Silent p.K438K 0.39 TCGA-ND-A4WC-01 2 219330886 219330886 A C USP37 Missense_Mutation p.F771L 0.25 tolerated(0.66) benign(0.003) TCGA-ND-A4WC-01 2 219487377 219487377 A G PLCD4 Missense_Mutation p.D183G 0.26 deleterious(0) benign(0.384) TCGA-ND-A4WC-01 2 219900213 219900213 C A CCDC108 Missense_Mutation p.K177N 0.33 deleterious(0) probably_damaging(0.984) TCGA-ND-A4WC-01 2 220026863 220026863 C T SLC23A3 Missense_Mutation p.R542Q 0.15 tolerated(0.52) benign(0.001) TCGA-ND-A4WC-01 2 220501573 220501573 G A SLC4A3 Missense_Mutation p.E865K 0.29 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 220502517 220502517 G A SLC4A3 Missense_Mutation p.R944H 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-ND-A4WC-01 2 222290640 222290640 C A EPHA4 3'UTR 0.50 TCGA-ND-A4WC-01 2 222307707 222307707 C T EPHA4 Missense_Mutation p.R639H 0.25 tolerated(0.07) probably_damaging(0.965) TCGA-ND-A4WC-01 2 223513464 223513464 C A FARSB Nonsense_Mutation p.E37* 0.27 TCGA-ND-A4WC-01 2 224822309 224822309 C A MRPL44 Silent p.R40R 0.22 TCGA-ND-A4WC-01 2 225662652 225662652 A G DOCK10 Missense_Mutation p.L1514S 0.45 deleterious(0) benign(0.088) TCGA-ND-A4WC-01 2 225668910 225668910 T G DOCK10 Missense_Mutation p.K1396T 0.25 tolerated(0.13) probably_damaging(0.968) TCGA-ND-A4WC-01 2 225672668 225672668 A C DOCK10 Missense_Mutation p.L1182R 0.27 deleterious(0) possibly_damaging(0.797) TCGA-ND-A4WC-01 2 225761087 225761087 T G DOCK10 Missense_Mutation p.K114T 0.33 deleterious(0.04) probably_damaging(0.948) TCGA-ND-A4WC-01 2 228012295 228012295 C T COL4A4 5'UTR 0.33 TCGA-ND-A4WC-01 2 228176616 228176616 T C COL4A3 3'UTR 0.25 TCGA-ND-A4WC-01 2 228207487 228207487 G T MFF Missense_Mutation p.R182I 0.21 tolerated(0.16) benign(0.045) TCGA-ND-A4WC-01 2 228858265 228858265 G T SPHKAP Missense_Mutation p.S1569Y 0.33 deleterious(0) probably_damaging(0.968) TCGA-ND-A4WC-01 2 228884217 228884217 G A SPHKAP Silent p.V451V 0.29 TCGA-ND-A4WC-01 2 230411675 230411675 C T DNER Silent p.T327T 0.35 TCGA-ND-A4WC-01 2 230642058 230642058 C A TRIP12 Missense_Mutation p.K1759N 0.43 deleterious(0.01) possibly_damaging(0.634) TCGA-ND-A4WC-01 2 230670526 230670526 G T TRIP12 Intron 0.24 TCGA-ND-A4WC-01 2 232322392 232322392 T G NCL Missense_Mutation p.N470T 0.37 benign(0.153) TCGA-ND-A4WC-01 2 232660931 232660931 G A COPS7B Missense_Mutation p.R148Q 0.48 tolerated(0.08) benign(0.2) TCGA-ND-A4WC-01 2 233498584 233498584 C T EFHD1 Missense_Mutation p.A57V 0.36 tolerated(0.07) benign(0.01) TCGA-ND-A4WC-01 2 234545624 234545624 C A UGT1A10 Silent p.T152T 0.29 TCGA-ND-A4WC-01 2 234580906 234580906 T G UGT1A9 Nonsense_Mutation p.L109* 0.12 TCGA-ND-A4WC-01 2 234774944 234774944 G T MSL3P1 RNA 0.35 TCGA-ND-A4WC-01 2 234878372 234878372 T C TRPM8 Missense_Mutation p.S687P 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-ND-A4WC-01 2 235951498 235951498 C T SH3BP4 Silent p.G695G 0.09 TCGA-ND-A4WC-01 2 235962357 235962357 A C SH3BP4 Missense_Mutation p.K930T 0.17 deleterious(0) possibly_damaging(0.451) TCGA-ND-A4WC-01 2 236792005 236792005 G A AGAP1 Missense_Mutation p.R356Q 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-ND-A4WC-01 2 237489107 237489107 C T ACKR3 5'UTR 0.36 TCGA-ND-A4WC-01 2 238265978 238265978 C A COL6A3 Intron 0.34 TCGA-ND-A4WC-01 2 238268776 238268776 G A COL6A3 Silent p.N2079N 0.40 TCGA-ND-A4WC-01 2 238277715 238277715 C T COL6A3 Missense_Mutation p.R1464Q 0.19 benign(0.146) TCGA-ND-A4WC-01 2 238285704 238285704 A C COL6A3 Missense_Mutation p.I927M 0.09 probably_damaging(0.972) TCGA-ND-A4WC-01 2 238662113 238662113 G T LRRFIP1 Missense_Mutation p.E215D 0.23 tolerated(0.07) possibly_damaging(0.773) TCGA-ND-A4WC-01 2 238725726 238725726 A C RBM44 Missense_Mutation p.N56T 0.26 deleterious(0.01) benign(0.025) TCGA-ND-A4WC-01 2 239049878 239049878 C A KLHL30 Missense_Mutation p.N161K 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-ND-A4WC-01 2 239093869 239093869 A C ILKAP Missense_Mutation p.F162C 0.39 deleterious(0) probably_damaging(0.981) TCGA-ND-A4WC-01 2 239174207 239174207 C A PER2 Missense_Mutation p.R331I 0.32 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 23980888 23980889 - T ATAD2B Frame_Shift_Ins p.D1160Rfs*2 0.24 TCGA-ND-A4WC-01 2 241066116 241066116 C T MYEOV2 Missense_Mutation p.R208Q 0.24 deleterious_low_confidence(0) unknown(0) TCGA-ND-A4WC-01 2 241660374 241660374 A G KIF1A Missense_Mutation p.C1609R 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 2 241661294 241661294 C T KIF1A Missense_Mutation p.R1558H 0.37 deleterious(0.01) benign(0.071) TCGA-ND-A4WC-01 2 242066686 242066686 A C PASK Missense_Mutation p.D548E 0.38 tolerated(0.07) benign(0.022) TCGA-ND-A4WC-01 2 242079418 242079418 T C PASK Missense_Mutation p.D161G 0.40 deleterious(0.01) possibly_damaging(0.825) TCGA-ND-A4WC-01 2 242079939 242079939 T G PASK Silent p.T142T 0.29 TCGA-ND-A4WC-01 2 242274562 242274562 C T SEPT2 Missense_Mutation p.S51L 0.47 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 2 24261807 24261807 G A C2orf44 Silent p.S186S 0.20 TCGA-ND-A4WC-01 2 242795030 242795030 G A PDCD1 Missense_Mutation p.S60L 0.34 tolerated(0.11) benign(0.418) TCGA-ND-A4WC-01 2 24290618 24290618 A G SF3B14 3'UTR 0.29 TCGA-ND-A4WC-01 2 24509172 24509172 A C ITSN2 Nonsense_Mutation p.L591* 0.11 TCGA-ND-A4WC-01 2 25194715 25194715 A G DNAJC27 Missense_Mutation p.I20T 0.39 deleterious(0) possibly_damaging(0.854) TCGA-ND-A4WC-01 2 25387575 25387575 C T POMC Missense_Mutation p.E23K 0.31 tolerated(0.37) benign(0.018) TCGA-ND-A4WC-01 2 25966456 25966456 G A ASXL2 Missense_Mutation p.S917L 0.32 tolerated(0.24) benign(0.008) TCGA-ND-A4WC-01 2 26022301 26022301 T C ASXL2 Missense_Mutation p.D119G 0.12 tolerated(0.15) benign(0) TCGA-ND-A4WC-01 2 26667759 26667759 T C DRC1 Missense_Mutation p.S447P 0.12 tolerated(0.16) possibly_damaging(0.709) TCGA-ND-A4WC-01 2 27315234 27315234 G A KHK Missense_Mutation p.A43T 0.40 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 2 27324190 27324190 T C CGREF1 Silent p.Q303Q 0.33 TCGA-ND-A4WC-01 2 27430447 27430447 G T SLC5A6 Missense_Mutation p.F24L 0.29 deleterious(0.02) possibly_damaging(0.728) TCGA-ND-A4WC-01 2 27551727 27551727 C T GTF3C2 Missense_Mutation p.R704Q 0.34 deleterious(0) possibly_damaging(0.903) TCGA-ND-A4WC-01 2 27560634 27560634 C A GTF3C2 Intron 0.31 TCGA-ND-A4WC-01 2 27565787 27565787 C A GTF3C2 Missense_Mutation p.D159Y 0.39 deleterious(0.01) benign(0.158) TCGA-ND-A4WC-01 2 27700448 27700448 T G IFT172 Missense_Mutation p.K400T 0.35 deleterious(0.01) possibly_damaging(0.764) TCGA-ND-A4WC-01 2 27708255 27708255 T G IFT172 Missense_Mutation p.K52T 0.42 deleterious(0) probably_damaging(0.976) TCGA-ND-A4WC-01 2 27716803 27716803 T G FNDC4 Missense_Mutation p.S150R 0.29 tolerated(0.08) benign(0.023) TCGA-ND-A4WC-01 2 27728635 27728635 G T GCKR Missense_Mutation p.K267N 0.33 tolerated(0.12) benign(0.323) TCGA-ND-A4WC-01 2 28626994 28626994 T C FOSL2 Silent p.P41P 0.08 TCGA-ND-A4WC-01 2 29001835 29001835 G T PPP1CB Missense_Mutation p.E115D 0.31 tolerated_low_confidence(0.16) possibly_damaging(0.7) TCGA-ND-A4WC-01 2 29294728 29294728 G T C2orf71 Silent p.P800P 0.34 TCGA-ND-A4WC-01 2 30957322 30957322 C A CAPN13 Missense_Mutation p.E597D 0.37 tolerated(0.06) benign(0.001) TCGA-ND-A4WC-01 2 32449775 32449775 G A NLRC4 Missense_Mutation p.R948C 0.31 tolerated(1) benign(0) TCGA-ND-A4WC-01 2 32475335 32475335 G T NLRC4 Missense_Mutation p.S533Y 0.38 tolerated(0.2) possibly_damaging(0.752) TCGA-ND-A4WC-01 2 32476392 32476392 G A NLRC4 Nonsense_Mutation p.R181* 0.33 TCGA-ND-A4WC-01 2 32640478 32640478 A G BIRC6 Missense_Mutation p.N707D 0.38 benign(0.004) TCGA-ND-A4WC-01 2 33413754 33413754 G T LTBP1 Nonsense_Mutation p.E513* 0.38 TCGA-ND-A4WC-01 2 3428329 3428329 T G TRAPPC12 Missense_Mutation p.L438V 0.34 deleterious(0) possibly_damaging(0.656) TCGA-ND-A4WC-01 2 3628443 3628443 A G RPS7 Missense_Mutation p.N186D 0.25 tolerated(0.63) benign(0.033) TCGA-ND-A4WC-01 2 36744477 36744477 T A CRIM1 Missense_Mutation p.F666L 0.41 tolerated(0.68) probably_damaging(0.914) TCGA-ND-A4WC-01 2 37121137 37121137 G A STRN Nonsense_Mutation p.R279* 0.11 TCGA-ND-A4WC-01 2 37235920 37235920 G A HEATR5B Silent p.D1452D 0.39 TCGA-ND-A4WC-01 2 37268371 37268371 G A HEATR5B Missense_Mutation p.R921C 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 3727581 3727581 G T ALLC Nonsense_Mutation p.E99* 0.44 TCGA-ND-A4WC-01 2 37287862 37287862 G A HEATR5B Missense_Mutation p.R571C 0.45 deleterious(0) probably_damaging(0.931) TCGA-ND-A4WC-01 2 3729237 3729237 A T ALLC Missense_Mutation p.E104D 0.42 tolerated(0.5) benign(0.008) TCGA-ND-A4WC-01 2 37374085 37374085 C A EIF2AK2 Nonsense_Mutation p.E51* 0.25 TCGA-ND-A4WC-01 2 37455758 37455758 G T CEBPZ Missense_Mutation p.S193Y 0.33 deleterious(0) possibly_damaging(0.873) TCGA-ND-A4WC-01 2 37487503 37487503 T G PRKD3 Missense_Mutation p.N637H 0.46 tolerated(0.12) possibly_damaging(0.668) TCGA-ND-A4WC-01 2 37586751 37586751 A C QPCT Missense_Mutation p.Q99P 0.38 tolerated(0.15) possibly_damaging(0.478) TCGA-ND-A4WC-01 2 39055483 39055483 G A DHX57 Nonsense_Mutation p.R880* 0.30 TCGA-ND-A4WC-01 2 39095357 39095357 A C DHX57 Missense_Mutation p.F64C 0.24 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-ND-A4WC-01 2 39499439 39499439 T C MAP4K3 Missense_Mutation p.D653G 0.20 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 40366764 40366764 G A SLC8A1 Silent p.F774F 0.34 TCGA-ND-A4WC-01 2 40401859 40401859 T C SLC8A1 Silent p.G652G 0.21 TCGA-ND-A4WC-01 2 40655715 40655715 T C SLC8A1 Missense_Mutation p.N569S 0.26 tolerated(0.28) benign(0.001) TCGA-ND-A4WC-01 2 43797628 43797628 T G THADA Missense_Mutation p.S696R 0.31 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 2 43798951 43798951 T G THADA Missense_Mutation p.E653D 0.39 deleterious(0) possibly_damaging(0.764) TCGA-ND-A4WC-01 2 44021614 44021614 C T DYNC2LI1 Silent p.L113L 0.25 TCGA-ND-A4WC-01 2 44073297 44073297 G A ABCG8 Missense_Mutation p.D57N 0.44 tolerated(0.52) benign(0.02) TCGA-ND-A4WC-01 2 44170828 44170828 T G LRPPRC Missense_Mutation p.E834D 0.16 tolerated(0.06) benign(0.178) TCGA-ND-A4WC-01 2 44187698 44187698 C A LRPPRC Missense_Mutation p.D522Y 0.10 deleterious(0.01) possibly_damaging(0.707) TCGA-ND-A4WC-01 2 44999282 44999282 G A CAMKMT 3'UTR 0.40 TCGA-ND-A4WC-01 2 45620089 45620089 C T SRBD1 Missense_Mutation p.R898Q 0.34 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 2 45645642 45645642 A C SRBD1 Missense_Mutation p.I732S 0.40 deleterious(0) probably_damaging(0.961) TCGA-ND-A4WC-01 2 46842208 46842208 C A PIGF Missense_Mutation p.E32D 0.32 tolerated(0.56) benign(0.004) TCGA-ND-A4WC-01 2 46851312 46851312 G A CRIPT Silent p.A84A 0.20 TCGA-ND-A4WC-01 2 46986192 46986192 C T SOCS5 Missense_Mutation p.R175C 0.28 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 2 48026710 48026710 G T MSH6 Missense_Mutation p.D530Y 0.39 deleterious(0.01) possibly_damaging(0.905) TCGA-ND-A4WC-01 2 48035233 48035233 G T FBXO11 3'UTR 0.33 TCGA-ND-A4WC-01 2 48914916 48914916 A T LHCGR Missense_Mutation p.S674T 0.19 tolerated(0.08) benign(0.118) TCGA-ND-A4WC-01 2 48915866 48915866 A G LHCGR Missense_Mutation p.M357T 0.42 deleterious(0) benign(0.265) TCGA-ND-A4WC-01 2 49195948 49195948 G A FSHR Missense_Mutation p.S248L 0.19 deleterious(0.01) benign(0.02) TCGA-ND-A4WC-01 2 54858519 54858519 A G SPTBN1 Missense_Mutation p.D1112G 0.33 tolerated(0.12) benign(0.07) TCGA-ND-A4WC-01 2 55561822 55561822 G T CCDC88A Missense_Mutation p.S712Y 0.33 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 2 55646215 55646215 T C CCDC88A Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) benign(0.438) TCGA-ND-A4WC-01 2 56102133 56102133 G T EFEMP1 Missense_Mutation p.F316L 0.47 deleterious(0.01) benign(0.273) TCGA-ND-A4WC-01 2 60689471 60689471 A G BCL11A Silent p.T192T 0.22 TCGA-ND-A4WC-01 2 61118857 61118857 G A REL Missense_Mutation p.R17K 0.40 tolerated(0.81) probably_damaging(0.993) TCGA-ND-A4WC-01 2 61189976 61189976 T C PUS10 Missense_Mutation p.E258G 0.58 deleterious(0.03) benign(0.287) TCGA-ND-A4WC-01 2 61331021 61331021 C T KIAA1841 Missense_Mutation p.R467C 0.39 tolerated(0.21) benign(0) TCGA-ND-A4WC-01 2 61415063 61415063 A G AHSA2 3'UTR 0.56 TCGA-ND-A4WC-01 2 61415812 61415812 G A USP34 Missense_Mutation p.R3356C 0.50 deleterious(0) possibly_damaging(0.797) TCGA-ND-A4WC-01 2 61575414 61575414 C A USP34 Missense_Mutation p.D626Y 0.37 deleterious_low_confidence(0) benign(0.241) TCGA-ND-A4WC-01 2 61717829 61717829 T C XPO1 Missense_Mutation p.Y657C 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-ND-A4WC-01 2 62112207 62112207 G A CCT4 Missense_Mutation p.A43V 0.14 deleterious(0.03) benign(0.441) TCGA-ND-A4WC-01 2 64083494 64083494 G A UGP2 Missense_Mutation p.R25Q 0.34 tolerated(0.11) benign(0.007) TCGA-ND-A4WC-01 2 64685453 64685453 T G LGALSL Missense_Mutation p.V137G 0.12 deleterious(0.03) possibly_damaging(0.849) TCGA-ND-A4WC-01 2 64779068 64779068 G T AFTPH Missense_Mutation p.D154Y 0.29 tolerated(0.51) possibly_damaging(0.837) TCGA-ND-A4WC-01 2 65231096 65231096 G A SLC1A4 Missense_Mutation p.D194N 0.11 tolerated(0.38) benign(0.004) TCGA-ND-A4WC-01 2 67630550 67630550 G A ETAA1 Missense_Mutation p.E246K 0.31 tolerated(0.14) benign(0.06) TCGA-ND-A4WC-01 2 68607896 68607896 C A PLEK Missense_Mutation p.F80L 0.38 deleterious(0.01) possibly_damaging(0.466) TCGA-ND-A4WC-01 2 68613778 68613778 A G PLEK Missense_Mutation p.E206G 0.34 tolerated(0.36) benign(0.018) TCGA-ND-A4WC-01 2 68622924 68622924 G A PLEK Silent p.Q343Q 0.28 TCGA-ND-A4WC-01 2 68962198 68962198 G A ARHGAP25 5'UTR 0.32 TCGA-ND-A4WC-01 2 69093648 69093648 G T BMP10 Missense_Mutation p.F130L 0.42 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 2 69633160 69633160 C A NFU1 Missense_Mutation p.R180I 0.27 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 2 7030405 7030405 C T RSAD2 Silent p.F279F 0.35 TCGA-ND-A4WC-01 2 70441492 70441492 C A TIA1 Missense_Mutation p.Q341H 0.39 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 2 71360050 71360050 A C MPHOSPH10 Missense_Mutation p.K38Q 0.23 deleterious(0.03) benign(0.102) TCGA-ND-A4WC-01 2 71360080 71360080 G T MPHOSPH10 Missense_Mutation p.D48Y 0.35 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 2 71360500 71360500 A C MPHOSPH10 Missense_Mutation p.N188H 0.29 tolerated(0.15) benign(0.232) TCGA-ND-A4WC-01 2 71368389 71368389 A C MPHOSPH10 Missense_Mutation p.K446Q 0.34 deleterious(0) possibly_damaging(0.708) TCGA-ND-A4WC-01 2 71415581 71415581 G T PAIP2B 3'UTR 0.27 TCGA-ND-A4WC-01 2 71654320 71654320 T G ZNF638 Missense_Mutation p.F1774C 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 71801397 71801397 G A DYSF Missense_Mutation p.E1100K 0.33 tolerated(1) benign(0.009) TCGA-ND-A4WC-01 2 71825739 71825739 T C DYSF Missense_Mutation p.V1207A 0.19 tolerated(0.16) possibly_damaging(0.62) TCGA-ND-A4WC-01 2 72740314 72740314 C A EXOC6B Nonsense_Mutation p.E372* 0.40 TCGA-ND-A4WC-01 2 72958365 72958365 C A EXOC6B Missense_Mutation p.A113S 0.38 tolerated(0.32) benign(0.002) TCGA-ND-A4WC-01 2 73675274 73675274 G T ALMS1 Missense_Mutation p.K539N 0.42 benign(0.041) TCGA-ND-A4WC-01 2 73679645 73679645 G T ALMS1 Missense_Mutation p.K1996N 0.15 possibly_damaging(0.52) TCGA-ND-A4WC-01 2 73868634 73868634 C T NAT8 Missense_Mutation p.R41Q 0.41 tolerated(0.39) benign(0.004) TCGA-ND-A4WC-01 2 73899614 73899614 C T ALMS1P RNA 0.19 TCGA-ND-A4WC-01 2 73989834 73989834 T G DUSP11 Missense_Mutation p.N363T 0.10 tolerated_low_confidence(0.13) benign(0.002) TCGA-ND-A4WC-01 2 74000942 74000942 C A DUSP11 Nonsense_Mutation p.E187* 0.38 TCGA-ND-A4WC-01 2 74043300 74043300 C A C2orf78 Missense_Mutation p.F650L 0.23 tolerated(1) benign(0.002) TCGA-ND-A4WC-01 2 74458402 74458402 G T SLC4A5 Silent p.I936I 0.31 TCGA-ND-A4WC-01 2 74477584 74477584 G T SLC4A5 Missense_Mutation p.F513L 0.28 deleterious(0.01) possibly_damaging(0.612) TCGA-ND-A4WC-01 2 74687176 74687176 C T WBP1 Missense_Mutation p.R117C 0.28 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 2 74688986 74688986 G A MOGS Missense_Mutation p.H644Y 0.28 deleterious(0) probably_damaging(0.951) TCGA-ND-A4WC-01 2 75425876 75425876 C A TACR1 Missense_Mutation p.R62I 0.31 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 2 75882241 75882241 A C MRPL19 Missense_Mutation p.N237H 0.49 deleterious(0.02) benign(0.092) TCGA-ND-A4WC-01 2 80646632 80646632 T C CTNNA2 Missense_Mutation p.L399S 0.33 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 2 80874726 80874726 C T CTNNA2 Missense_Mutation p.S816L 0.31 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 2 85255047 85255047 C T KCMF1 Nonsense_Mutation p.R18* 0.41 TCGA-ND-A4WC-01 2 85924740 85924740 G A GNLY Missense_Mutation p.V123M 0.37 tolerated(0.65) benign(0.04) TCGA-ND-A4WC-01 2 8871069 8871069 G A KIDINS220 Silent p.F1699F 0.44 TCGA-ND-A4WC-01 2 88828941 88828941 C A TEX37 Silent p.V164V 0.14 TCGA-ND-A4WC-01 2 89327160 89327160 G T IGKV3-11 Missense_Mutation p.L8I 0.36 deleterious(0.05) benign(0.305) TCGA-ND-A4WC-01 2 89417282 89417282 G A IGKV1-17 Silent p.L9L 0.27 TCGA-ND-A4WC-01 2 95514997 95514997 T C RNU6-1320P 5'Flank 0.29 TCGA-ND-A4WC-01 2 95950732 95950732 C T PROM2 Missense_Mutation p.R582W 0.44 deleterious(0) benign(0) TCGA-ND-A4WC-01 2 96260071 96260071 G T TRIM43 Missense_Mutation p.K100N 0.29 deleterious(0) probably_damaging(0.953) TCGA-ND-A4WC-01 2 96690545 96690545 C T GPAT2 Silent p.T468T 0.31 TCGA-ND-A4WC-01 2 9676860 9676860 T G ADAM17 Missense_Mutation p.K110Q 0.36 tolerated(0.98) benign(0.002) TCGA-ND-A4WC-01 2 96780585 96780585 C T ADRA2B Missense_Mutation p.R435Q 0.41 tolerated(0.17) possibly_damaging(0.493) TCGA-ND-A4WC-01 2 96852375 96852375 C A STARD7 3'UTR 0.31 TCGA-ND-A4WC-01 2 96858113 96858113 A G STARD7 Silent p.F279F 0.33 TCGA-ND-A4WC-01 2 97279270 97279270 C A KANSL3 Missense_Mutation p.K250N 0.34 deleterious(0.01) possibly_damaging(0.786) TCGA-ND-A4WC-01 2 97373532 97373532 T C LMAN2L Missense_Mutation p.T286A 0.27 tolerated(0.55) benign(0.396) TCGA-ND-A4WC-01 2 97405653 97405653 A G LMAN2L Missense_Mutation p.V42A 0.30 tolerated(0.61) benign(0.002) TCGA-ND-A4WC-01 2 97475340 97475340 G T CNNM4 3'UTR 0.39 TCGA-ND-A4WC-01 2 98169646 98169646 C A ANKRD36B RNA 0.38 TCGA-ND-A4WC-01 2 98277092 98277092 T C ACTR1B Missense_Mutation p.H44R 0.31 deleterious(0.01) probably_damaging(0.97) TCGA-ND-A4WC-01 2 98928336 98928336 G A VWA3B Silent p.A1192A 0.29 TCGA-ND-A4WC-01 2 99006196 99006196 C T CNGA3 Silent p.I175I 0.36 TCGA-ND-A4WC-01 2 99272743 99272743 G A MGAT4A Intron 0.28 TCGA-ND-A4WC-01 2 99294911 99294911 C A MGAT4A Nonsense_Mutation p.E40* 0.36 TCGA-ND-A4WC-01 2 99812185 99812185 G A MRPL30 3'UTR 0.26 TCGA-ND-A4WC-01 2 99858734 99858734 C A LYG2 3'UTR 0.42 TCGA-ND-A4WC-01 2 99944079 99944079 A G TXNDC9 Missense_Mutation p.I76T 0.30 deleterious(0) benign(0.098) TCGA-ND-A4WC-01 3 100947714 100947714 G T IMPG2 Missense_Mutation p.Q1214K 0.33 deleterious(0) probably_damaging(0.912) TCGA-ND-A4WC-01 3 101086730 101086730 T G SENP7 Missense_Mutation p.N308H 0.45 deleterious(0.04) benign(0.002) TCGA-ND-A4WC-01 3 101284157 101284157 C A TRMT10C Missense_Mutation p.L178I 0.27 tolerated(0.21) benign(0.097) TCGA-ND-A4WC-01 3 101451471 101451471 A C CEP97 Missense_Mutation p.D234A 0.26 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 3 102187875 102187875 G T ZPLD1 Nonsense_Mutation p.E293* 0.25 TCGA-ND-A4WC-01 3 10311962 10311962 G A TATDN2 Missense_Mutation p.D366N 0.37 deleterious(0.04) benign(0.187) TCGA-ND-A4WC-01 3 105452861 105452861 C T CBLB Missense_Mutation p.A399T 0.30 tolerated(0.08) possibly_damaging(0.685) TCGA-ND-A4WC-01 3 105586436 105586436 C T CBLB Splice_Site 0.29 TCGA-ND-A4WC-01 3 107492183 107492183 T G BBX Missense_Mutation p.S539A 0.35 tolerated(0.33) probably_damaging(0.977) TCGA-ND-A4WC-01 3 108724067 108724067 C A MORC1 Missense_Mutation p.Q621H 0.33 tolerated(0.17) benign(0.006) TCGA-ND-A4WC-01 3 10970992 10970992 C A SLC6A11 Silent p.I446I 0.34 TCGA-ND-A4WC-01 3 11064023 11064023 C T SLC6A1 Missense_Mutation p.R195C 0.29 deleterious(0) probably_damaging(0.913) TCGA-ND-A4WC-01 3 111602875 111602875 C A PHLDB2 Intron 0.22 TCGA-ND-A4WC-01 3 111602886 111602886 A C PHLDB2 Intron 0.48 TCGA-ND-A4WC-01 3 111603511 111603511 C T PHLDB2 Missense_Mutation p.S196L 0.34 deleterious(0) probably_damaging(0.946) TCGA-ND-A4WC-01 3 111671466 111671466 C A PHLDB2 Silent p.L893L 0.44 TCGA-ND-A4WC-01 3 111799973 111799973 G T TMPRSS7 3'UTR 0.38 TCGA-ND-A4WC-01 3 111898408 111898408 T A SLC9C1 Missense_Mutation p.K963N 0.31 tolerated(0.07) benign(0.126) TCGA-ND-A4WC-01 3 112335658 112335658 G A CCDC80 Silent p.I740I 0.44 TCGA-ND-A4WC-01 3 112545866 112545866 T G CD200R1L Missense_Mutation p.K218T 0.31 deleterious(0.01) benign(0.386) TCGA-ND-A4WC-01 3 112693688 112693688 C A CD200R1 Missense_Mutation p.R6I 0.42 tolerated(0.7) probably_damaging(0.975) TCGA-ND-A4WC-01 3 113327383 113327383 G A SIDT1 Missense_Mutation p.D574N 0.35 deleterious(0.01) possibly_damaging(0.864) TCGA-ND-A4WC-01 3 113346592 113346592 C A SIDT1 3'UTR 0.18 TCGA-ND-A4WC-01 3 113374248 113374248 C T KIAA2018 Missense_Mutation p.R2094Q 0.28 probably_damaging(0.997) TCGA-ND-A4WC-01 3 113375981 113375981 T C KIAA2018 Silent p.Q1516Q 0.38 TCGA-ND-A4WC-01 3 113627897 113627897 G T GRAMD1C Missense_Mutation p.K294N 0.34 tolerated(0.35) benign(0.273) TCGA-ND-A4WC-01 3 113634593 113634593 G A GRAMD1C Missense_Mutation p.R333H 0.26 deleterious(0.04) benign(0.046) TCGA-ND-A4WC-01 3 113789594 113789594 A C QTRTD1 Missense_Mutation p.K164T 0.38 tolerated(0.39) benign(0) TCGA-ND-A4WC-01 3 114057897 114057897 G A ZBTB20 Silent p.I727I 0.31 TCGA-ND-A4WC-01 3 11684993 11684993 T G VGLL4 5'UTR 0.31 TCGA-ND-A4WC-01 3 118865185 118865185 G A C3orf30 Missense_Mutation p.R50K 0.31 tolerated(0.21) possibly_damaging(0.87) TCGA-ND-A4WC-01 3 118865848 118865848 C A C3orf30 Missense_Mutation p.S271Y 0.47 deleterious(0) probably_damaging(0.989) TCGA-ND-A4WC-01 3 118948740 118948740 C T B4GALT4 Silent p.T69T 0.09 TCGA-ND-A4WC-01 3 119134773 119134773 T C ARHGAP31 Missense_Mutation p.S1333P 0.27 tolerated(0.06) benign(0.015) TCGA-ND-A4WC-01 3 119165904 119165904 C T TMEM39A Missense_Mutation p.R179Q 0.37 tolerated(0.06) possibly_damaging(0.45) TCGA-ND-A4WC-01 3 119256042 119256042 G T CD80 Missense_Mutation p.F214L 0.32 tolerated(0.26) possibly_damaging(0.765) TCGA-ND-A4WC-01 3 119306657 119306657 C T ADPRH Missense_Mutation p.R336W 0.27 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 3 119316770 119316770 G T PLA1A Missense_Mutation p.G4C 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.867) TCGA-ND-A4WC-01 3 119451299 119451299 A C MAATS1 Missense_Mutation p.N393H 0.33 deleterious(0) probably_damaging(0.951) TCGA-ND-A4WC-01 3 120401007 120401007 G A HGD 5'UTR 0.29 TCGA-ND-A4WC-01 3 120469578 120469578 G A GTF2E1 Missense_Mutation p.R60Q 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 3 121207791 121207791 C A POLQ Missense_Mutation p.E1329D 0.37 tolerated(0.14) benign(0.228) TCGA-ND-A4WC-01 3 121410023 121410023 C A GOLGB1 Nonsense_Mutation p.E2730* 0.36 TCGA-ND-A4WC-01 3 121416558 121416558 C T GOLGB1 Missense_Mutation p.E938K 0.10 probably_damaging(0.999) TCGA-ND-A4WC-01 3 121448762 121448762 T C GOLGB1 Missense_Mutation p.I67V 0.39 benign(0.011) TCGA-ND-A4WC-01 3 122002980 122002980 C T CASR Silent p.L737L 0.31 TCGA-ND-A4WC-01 3 122060514 122060514 G T CSTA 3'UTR 0.25 TCGA-ND-A4WC-01 3 122121631 122121631 G T FAM162A Missense_Mutation p.R20I 0.29 deleterious(0) probably_damaging(0.933) TCGA-ND-A4WC-01 3 122121665 122121665 C T FAM162A Silent p.S31S 0.30 TCGA-ND-A4WC-01 3 122255817 122255817 C A PARP9 Missense_Mutation p.K658N 0.36 deleterious(0.01) possibly_damaging(0.638) TCGA-ND-A4WC-01 3 122354967 122354967 G A PARP15 3'UTR 0.23 TCGA-ND-A4WC-01 3 122630331 122630331 C A SEMA5B Intron 0.35 TCGA-ND-A4WC-01 3 122641234 122641234 C T SEMA5B Missense_Mutation p.A499T 0.40 tolerated(0.08) benign(0.343) TCGA-ND-A4WC-01 3 123383094 123383094 G A MYLK Silent p.S1281S 0.37 TCGA-ND-A4WC-01 3 124141773 124141773 A C KALRN Missense_Mutation p.K884T 0.08 tolerated(0.52) benign(0.006) TCGA-ND-A4WC-01 3 124438348 124438348 A G RP11-71H17.7 5'Flank 0.39 TCGA-ND-A4WC-01 3 124642454 124642454 G A MUC13 Missense_Mutation p.S185L 0.29 deleterious(0) probably_damaging(0.951) TCGA-ND-A4WC-01 3 124720800 124720800 A G HEG1 Missense_Mutation p.V1138A 0.35 deleterious(0.03) probably_damaging(0.992) TCGA-ND-A4WC-01 3 12531417 12531417 T G TSEN2 Missense_Mutation p.F40V 0.40 deleterious(0.04) benign(0.439) TCGA-ND-A4WC-01 3 12544934 12544934 T C TSEN2 Missense_Mutation p.M161T 0.19 tolerated(0.93) benign(0.001) TCGA-ND-A4WC-01 3 12571276 12571276 C T TSEN2 Silent p.I384I 0.35 TCGA-ND-A4WC-01 3 126137314 126137314 G A CCDC37 Silent p.E144E 0.32 TCGA-ND-A4WC-01 3 126180490 126180490 A G ZXDC Missense_Mutation p.V672A 0.34 tolerated(0.08) benign(0.01) TCGA-ND-A4WC-01 3 127785899 127785899 C T SEC61A1 Nonsense_Mutation p.Q294* 0.16 TCGA-ND-A4WC-01 3 12858428 12858428 G A CAND2 Missense_Mutation p.R666Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 3 128696954 128696954 C A KIAA1257 Nonsense_Mutation p.E248* 0.23 TCGA-ND-A4WC-01 3 128757724 128757724 T G EFCC1 Silent p.A547A 0.10 TCGA-ND-A4WC-01 3 129034193 129034193 T G H1FX Missense_Mutation p.K185Q 0.26 tolerated_low_confidence(0.07) benign(0.184) TCGA-ND-A4WC-01 3 129155479 129155479 A T MBD4 Missense_Mutation p.F336L 0.35 tolerated(1) benign(0) TCGA-ND-A4WC-01 3 130189741 130189741 G T COL6A5 Missense_Mutation p.D2502Y 0.37 deleterious(0) possibly_damaging(0.56) TCGA-ND-A4WC-01 3 130279266 130279266 G T COL6A6 Missense_Mutation p.D20Y 0.45 deleterious(0.01) benign(0.219) TCGA-ND-A4WC-01 3 130698227 130698227 A C ATP2C1 Missense_Mutation p.I603L 0.34 tolerated(0.14) benign(0.044) TCGA-ND-A4WC-01 3 132075553 132075553 A G ACPP Missense_Mutation p.Y331C 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 3 132075810 132075810 C T ACPP Intron 0.38 TCGA-ND-A4WC-01 3 132179159 132179159 G T DNAJC13 Missense_Mutation p.K505N 0.41 tolerated(0.1) benign(0.036) TCGA-ND-A4WC-01 3 132218600 132218600 G A DNAJC13 Missense_Mutation p.R1455H 0.26 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 3 132403475 132403475 G A NPHP3 Missense_Mutation p.R1165W 0.31 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 3 133099396 133099396 C T TMEM108 Missense_Mutation p.R281C 0.43 tolerated_low_confidence(0.2) benign(0.276) TCGA-ND-A4WC-01 3 133485143 133485143 T C TF Missense_Mutation p.V451A 0.41 tolerated(0.09) possibly_damaging(0.793) TCGA-ND-A4WC-01 3 133661613 133661613 C T SLCO2A1 Splice_Site p.X488_splice 0.34 TCGA-ND-A4WC-01 3 13420466 13420466 C A NUP210 Missense_Mutation p.G331C 0.37 deleterious(0.03) possibly_damaging(0.832) TCGA-ND-A4WC-01 3 134880997 134880997 G A EPHB1 Silent p.K520K 0.33 TCGA-ND-A4WC-01 3 135722020 135722020 C A PPP2R3A Silent p.V560V 0.33 TCGA-ND-A4WC-01 3 136096557 136096557 A C STAG1 Missense_Mutation p.F772C 0.44 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 3 136221539 136221539 G A STAG1 Silent p.A253A 0.11 TCGA-ND-A4WC-01 3 136574280 136574280 C A SLC35G2 Silent p.V326V 0.07 TCGA-ND-A4WC-01 3 137843320 137843320 C T A4GNT Missense_Mutation p.R270H 0.38 deleterious(0.01) possibly_damaging(0.908) TCGA-ND-A4WC-01 3 137881390 137881390 C A DBR1 Nonsense_Mutation p.E326* 0.31 TCGA-ND-A4WC-01 3 138025310 138025310 C A NME9 Missense_Mutation p.R97M 0.22 deleterious(0) possibly_damaging(0.785) TCGA-ND-A4WC-01 3 140123599 140123599 G A CLSTN2 Missense_Mutation p.D210N 0.20 deleterious(0) probably_damaging(0.915) TCGA-ND-A4WC-01 3 140281660 140281660 C A CLSTN2 Silent p.G740G 0.29 TCGA-ND-A4WC-01 3 141162802 141162802 T G ZBTB38 Silent p.T524T 0.37 TCGA-ND-A4WC-01 3 141163404 141163404 C T ZBTB38 Missense_Mutation p.S725L 0.24 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 3 141644523 141644523 A C ATP1B3 Missense_Mutation p.K274Q 0.29 deleterious(0.03) possibly_damaging(0.893) TCGA-ND-A4WC-01 3 14172445 14172445 C T TMEM43 Missense_Mutation p.R96W 0.16 deleterious(0.01) benign(0.022) TCGA-ND-A4WC-01 3 142178199 142178199 G A ATR Missense_Mutation p.R2407C 0.35 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 3 142278191 142278191 T G ATR Missense_Mutation p.K545T 0.30 tolerated_low_confidence(0.12) benign(0.003) TCGA-ND-A4WC-01 3 142281126 142281126 C A ATR Missense_Mutation p.R373I 0.32 tolerated_low_confidence(0.19) benign(0.017) TCGA-ND-A4WC-01 3 142281164 142281164 C T ATR Silent p.G360G 0.33 TCGA-ND-A4WC-01 3 142395077 142395077 T C PLS1 Missense_Mutation p.M148T 0.29 deleterious(0.01) possibly_damaging(0.761) TCGA-ND-A4WC-01 3 142548671 142548671 C A PCOLCE2 Missense_Mutation p.R243I 0.44 deleterious(0.02) benign(0.093) TCGA-ND-A4WC-01 3 143082376 143082376 C T SLC9A9 Silent p.T518T 0.31 TCGA-ND-A4WC-01 3 14724344 14724344 G T C3orf20 Missense_Mutation p.G42C 0.23 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 3 14745900 14745900 G A C3orf20 Missense_Mutation p.R312Q 0.39 tolerated(0.06) probably_damaging(0.989) TCGA-ND-A4WC-01 3 148583119 148583119 T G CPA3 Missense_Mutation p.L9V 0.22 tolerated(0.11) benign(0.024) TCGA-ND-A4WC-01 3 148756968 148756968 C A HLTF Missense_Mutation p.K888N 0.28 tolerated(0.08) probably_damaging(1) TCGA-ND-A4WC-01 3 148768120 148768120 A C HLTF Missense_Mutation p.F506V 0.31 tolerated(1) benign(0.142) TCGA-ND-A4WC-01 3 149678973 149678973 T G RNF13 3'UTR 0.57 TCGA-ND-A4WC-01 3 150659462 150659462 C T CLRN1 Missense_Mutation p.V114M 0.30 deleterious(0) possibly_damaging(0.59) TCGA-ND-A4WC-01 3 151162927 151162927 C A IGSF10 Missense_Mutation p.K1614N 0.39 deleterious(0.04) benign(0.01) TCGA-ND-A4WC-01 3 151165867 151165867 C A IGSF10 Missense_Mutation p.Q634H 0.25 tolerated(0.17) benign(0.026) TCGA-ND-A4WC-01 3 151463410 151463410 G A AADACL2 Missense_Mutation p.R182Q 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-ND-A4WC-01 3 152174096 152174096 A G MBNL1 Silent p.A352A 0.37 TCGA-ND-A4WC-01 3 15275456 15275456 A C CAPN7 Missense_Mutation p.N421T 0.35 tolerated(0.6) benign(0.01) TCGA-ND-A4WC-01 3 154018402 154018402 T G DHX36 Missense_Mutation p.Y481S 0.34 deleterious(0.01) benign(0.273) TCGA-ND-A4WC-01 3 154018782 154018782 C T DHX36 Missense_Mutation p.R451Q 0.36 tolerated(0.45) benign(0.006) TCGA-ND-A4WC-01 3 154146951 154146951 C T GPR149 Missense_Mutation p.G152S 0.33 tolerated(0.21) benign(0.013) TCGA-ND-A4WC-01 3 155199563 155199563 C A PLCH1 Missense_Mutation p.D1426Y 0.35 tolerated_low_confidence(1) benign(0.002) TCGA-ND-A4WC-01 3 155611439 155611439 A C GMPS Missense_Mutation p.I54L 0.38 tolerated(0.25) benign(0.048) TCGA-ND-A4WC-01 3 155652731 155652731 T C GMPS Missense_Mutation p.V568A 0.26 deleterious(0.04) possibly_damaging(0.893) TCGA-ND-A4WC-01 3 156232899 156232899 C T KCNAB1 Missense_Mutation p.S252F 0.21 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 3 157177906 157177906 C A VEPH1 Intron 0.24 TCGA-ND-A4WC-01 3 157178088 157178088 G A VEPH1 Silent p.L137L 0.33 TCGA-ND-A4WC-01 3 159708090 159708090 G T IL12A Missense_Mutation p.M85I 0.37 tolerated(0.11) benign(0.032) TCGA-ND-A4WC-01 3 160120524 160120524 C A SMC4 Missense_Mutation p.L127I 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-ND-A4WC-01 3 160150975 160150975 C T SMC4 Missense_Mutation p.S1231F 0.46 deleterious(0.02) possibly_damaging(0.792) TCGA-ND-A4WC-01 3 160232971 160232971 A C KPNA4 Intron 0.34 TCGA-ND-A4WC-01 3 160395267 160395267 A C ARL14 Missense_Mutation p.I45L 0.32 deleterious(0.02) benign(0.115) TCGA-ND-A4WC-01 3 160786805 160786805 C T PPM1L Nonsense_Mutation p.R315* 0.32 TCGA-ND-A4WC-01 3 160804162 160804162 T C B3GALNT1 Silent p.K127K 0.33 TCGA-ND-A4WC-01 3 160952642 160952642 A G NMD3 Missense_Mutation p.K162R 0.30 tolerated(0.16) possibly_damaging(0.712) TCGA-ND-A4WC-01 3 161146971 161146971 G A RP11-3P17.5 RNA 0.21 TCGA-ND-A4WC-01 3 16302288 16302288 C A DPH3 Nonsense_Mutation p.E78* 0.33 TCGA-ND-A4WC-01 3 164725732 164725732 T G SI Missense_Mutation p.N1412H 0.27 deleterious(0) possibly_damaging(0.705) TCGA-ND-A4WC-01 3 164737404 164737404 C T SI Missense_Mutation p.D1137N 0.28 deleterious(0) probably_damaging(0.985) TCGA-ND-A4WC-01 3 164793787 164793787 T G SI Missense_Mutation p.K5T 0.50 deleterious(0) probably_damaging(0.959) TCGA-ND-A4WC-01 3 164907717 164907717 C A SLITRK3 Missense_Mutation p.S301I 0.36 deleterious(0.02) benign(0.063) TCGA-ND-A4WC-01 3 165547360 165547360 C T BCHE Missense_Mutation p.E488K 0.39 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 3 16633591 16633591 C A DAZL Missense_Mutation p.R287I 0.33 deleterious(0.04) possibly_damaging(0.67) TCGA-ND-A4WC-01 3 166958694 166958694 C A ZBBX Missense_Mutation p.D803Y 0.33 deleterious(0.04) possibly_damaging(0.592) TCGA-ND-A4WC-01 3 167016237 167016237 C A ZBBX Nonsense_Mutation p.E579* 0.28 TCGA-ND-A4WC-01 3 167185068 167185068 C A SERPINI2 Nonsense_Mutation p.E85* 0.28 TCGA-ND-A4WC-01 3 167414852 167414852 G A PDCD10 Silent p.S71S 0.38 TCGA-ND-A4WC-01 3 17052807 17052807 G A PLCL2 Missense_Mutation p.A531T 0.33 tolerated(0.19) possibly_damaging(0.643) TCGA-ND-A4WC-01 3 171830294 171830294 G A FNDC3B Missense_Mutation p.D9N 0.31 deleterious(0.03) probably_damaging(0.957) TCGA-ND-A4WC-01 3 172351253 172351253 A C NCEH1 3'UTR 0.39 TCGA-ND-A4WC-01 3 17279903 17279903 G A TBC1D5 Missense_Mutation p.A447V 0.24 tolerated(0.15) benign(0.015) TCGA-ND-A4WC-01 3 176769356 176769356 T G TBL1XR1 Missense_Mutation p.Q121H 0.35 tolerated(0.17) benign(0.002) TCGA-ND-A4WC-01 3 178742906 178742906 C T ZMAT3 Missense_Mutation p.E257K 0.30 tolerated(0.25) possibly_damaging(0.79) TCGA-ND-A4WC-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-ND-A4WC-01 3 178916936 178916936 G A PIK3CA Missense_Mutation p.R108H 0.31 deleterious(0.03) probably_damaging(0.983) TCGA-ND-A4WC-01 3 178968869 178968869 T C KCNMB3 Missense_Mutation p.E8G 0.35 tolerated_low_confidence(0.21) benign(0.002) TCGA-ND-A4WC-01 3 178976871 178976871 C T LRRFIP1P1 RNA 0.31 TCGA-ND-A4WC-01 3 179294470 179294470 G T ACTL6A Nonsense_Mutation p.E212* 0.27 TCGA-ND-A4WC-01 3 179519517 179519517 T C PEX5L 3'UTR 0.33 TCGA-ND-A4WC-01 3 180324343 180324343 G T TTC14 Missense_Mutation p.R375I 0.38 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 3 180334346 180334346 T C CCDC39 Silent p.E848E 0.22 TCGA-ND-A4WC-01 3 180334405 180334405 G A CCDC39 Missense_Mutation p.R829C 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 3 182591616 182591616 C T ATP11B Nonsense_Mutation p.R689* 0.35 TCGA-ND-A4WC-01 3 182925518 182925518 G A MCF2L2 Nonsense_Mutation p.R864* 0.29 TCGA-ND-A4WC-01 3 183368270 183368270 C A KLHL24 Missense_Mutation p.F42L 0.26 tolerated(0.85) benign(0.258) TCGA-ND-A4WC-01 3 183479328 183479328 C T YEATS2 Missense_Mutation p.L564F 0.36 deleterious_low_confidence(0) possibly_damaging(0.473) TCGA-ND-A4WC-01 3 183778318 183778318 C T HTR3C 3'UTR 0.32 TCGA-ND-A4WC-01 3 183995240 183995240 T C ECE2 Missense_Mutation p.L273P 0.36 deleterious(0) probably_damaging(0.982) TCGA-ND-A4WC-01 3 18438680 18438680 C A SATB1 Missense_Mutation p.D248Y 0.27 tolerated(0.08) benign(0.017) TCGA-ND-A4WC-01 3 184428893 184428893 G T MAGEF1 Missense_Mutation p.F239L 0.30 tolerated(0.5) probably_damaging(0.973) TCGA-ND-A4WC-01 3 184542494 184542494 A C VPS8 Missense_Mutation p.K25T 0.13 deleterious_low_confidence(0.01) benign(0.001) TCGA-ND-A4WC-01 3 185214663 185214663 C T TMEM41A Missense_Mutation p.A76T 0.54 tolerated(0.06) benign(0.052) TCGA-ND-A4WC-01 3 185643396 185643396 G A TRA2B Silent p.S63S 0.34 TCGA-ND-A4WC-01 3 186024714 186024714 G A DGKG Silent p.S40S 0.40 TCGA-ND-A4WC-01 3 186331076 186331076 A C AHSG Missense_Mutation p.N49T 0.29 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 3 186460097 186460097 G A KNG1 Missense_Mutation p.D638N 0.38 tolerated(0.15) benign(0.008) TCGA-ND-A4WC-01 3 187089081 187089081 C T RTP4 Nonsense_Mutation p.R221* 0.19 TCGA-ND-A4WC-01 3 187451396 187451396 T C BCL6 Missense_Mutation p.D29G 0.30 deleterious(0.02) probably_damaging(0.986) TCGA-ND-A4WC-01 3 190363530 190363530 C T IL1RAP Missense_Mutation p.A415V 0.44 tolerated(0.05) benign(0.027) TCGA-ND-A4WC-01 3 190936632 190936632 G T OSTN Nonsense_Mutation p.E67* 0.29 TCGA-ND-A4WC-01 3 191861668 191861668 T G FGF12 3'UTR 0.36 TCGA-ND-A4WC-01 3 192517117 192517117 G T MB21D2 Missense_Mutation p.F178L 0.47 deleterious(0.03) benign(0.136) TCGA-ND-A4WC-01 3 193049090 193049090 T G ATP13A5 Missense_Mutation p.K428T 0.38 tolerated(0.3) benign(0.027) TCGA-ND-A4WC-01 3 193052738 193052738 C T ATP13A5 Missense_Mutation p.R365Q 0.30 deleterious(0) probably_damaging(0.961) TCGA-ND-A4WC-01 3 193207521 193207521 C A ATP13A4 Nonsense_Mutation p.E246* 0.17 TCGA-ND-A4WC-01 3 193332780 193332780 C T OPA1 Missense_Mutation p.R101C 0.35 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 3 195300766 195300766 G T APOD Nonsense_Mutation p.S67* 0.09 TCGA-ND-A4WC-01 3 195481210 195481210 C T MUC4 Missense_Mutation p.G5068S 0.10 benign(0.258) TCGA-ND-A4WC-01 3 195505212 195505212 C T MUC4 Missense_Mutation p.R4302H 0.33 possibly_damaging(0.84) TCGA-ND-A4WC-01 3 196199276 196199276 G A RNF168 Missense_Mutation p.S377L 0.38 tolerated(0.11) benign(0.003) TCGA-ND-A4WC-01 3 196650379 196650379 C A SENP5 Nonsense_Mutation p.S660* 0.23 TCGA-ND-A4WC-01 3 20219833 20219833 C T SGOL1 Missense_Mutation p.E116K 0.31 tolerated(0.19) benign(0.026) TCGA-ND-A4WC-01 3 21552454 21552454 G A ZNF385D Missense_Mutation p.A113V 0.38 deleterious(0) benign(0.086) TCGA-ND-A4WC-01 3 24018775 24018775 A G NR1D2 Silent p.A535A 0.31 TCGA-ND-A4WC-01 3 25661352 25661352 C A TOP2B Splice_Site p.X1016_splice 0.39 TCGA-ND-A4WC-01 3 26751258 26751258 G A LRRC3B Missense_Mutation p.S32N 0.48 tolerated(0.13) benign(0.366) TCGA-ND-A4WC-01 3 27760902 27760902 G A EOMES Silent p.F369F 0.34 TCGA-ND-A4WC-01 3 30885949 30885949 A C GADL1 Missense_Mutation p.S221A 0.40 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 3 3097838 3097838 G A CNTN4 Silent p.S1005S 0.27 TCGA-ND-A4WC-01 3 32031204 32031204 C A ZNF860 Missense_Mutation p.F211L 0.35 tolerated(0.11) benign(0.312) TCGA-ND-A4WC-01 3 32495857 32495857 G A CMTM7 3'UTR 0.33 TCGA-ND-A4WC-01 3 36779844 36779844 C A DCLK3 Nonsense_Mutation p.E103* 0.33 TCGA-ND-A4WC-01 3 36873394 36873394 C T TRANK1 Silent p.E2516E 0.29 TCGA-ND-A4WC-01 3 36874612 36874612 T G TRANK1 Missense_Mutation p.K2110N 0.33 tolerated(0.09) benign(0.018) TCGA-ND-A4WC-01 3 36875328 36875328 C T TRANK1 Missense_Mutation p.A1872T 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-ND-A4WC-01 3 36897168 36897168 C A TRANK1 Nonsense_Mutation p.E1305* 0.12 TCGA-ND-A4WC-01 3 36897903 36897903 C T TRANK1 Missense_Mutation p.A1060T 0.35 tolerated(0.12) possibly_damaging(0.616) TCGA-ND-A4WC-01 3 37033157 37033157 A C EPM2AIP1 Missense_Mutation p.F471C 0.36 deleterious(0) probably_damaging(0.98) TCGA-ND-A4WC-01 3 37107798 37107798 C A LRRFIP2 Nonsense_Mutation p.E495* 0.42 TCGA-ND-A4WC-01 3 37285051 37285051 A G GOLGA4 Missense_Mutation p.K4E 0.33 unknown(0) TCGA-ND-A4WC-01 3 37365881 37365881 G T GOLGA4 Missense_Mutation p.R857I 0.28 possibly_damaging(0.789) TCGA-ND-A4WC-01 3 37368058 37368058 G T GOLGA4 Nonsense_Mutation p.E1583* 0.37 TCGA-ND-A4WC-01 3 37458846 37458846 G A C3orf35 Missense_Mutation p.R30Q 0.33 tolerated_low_confidence(0.34) probably_damaging(0.947) TCGA-ND-A4WC-01 3 37821468 37821468 A G ITGA9 Missense_Mutation p.T915A 0.32 deleterious(0.02) benign(0.002) TCGA-ND-A4WC-01 3 38163210 38163210 G A DLEC1 Missense_Mutation p.R1653Q 0.33 tolerated(0.38) benign(0.022) TCGA-ND-A4WC-01 3 38595795 38595795 G A SCN5A Silent p.F1596F 0.38 TCGA-ND-A4WC-01 3 38936224 38936224 C T SCN11A Missense_Mutation p.D879N 0.32 tolerated(0.23) possibly_damaging(0.832) TCGA-ND-A4WC-01 3 38968336 38968336 C T SCN11A Missense_Mutation p.R192Q 0.43 deleterious(0.04) probably_damaging(1) TCGA-ND-A4WC-01 3 38991631 38991631 C A SCN11A Nonsense_Mutation p.G75* 0.35 TCGA-ND-A4WC-01 3 391106 391106 G T CHL1 Nonsense_Mutation p.E305* 0.33 TCGA-ND-A4WC-01 3 39116403 39116403 C T WDR48 Missense_Mutation p.R287W 0.30 tolerated(0.18) possibly_damaging(0.586) TCGA-ND-A4WC-01 3 39159652 39159652 C A TTC21A Missense_Mutation p.S270Y 0.37 tolerated(0.97) benign(0) TCGA-ND-A4WC-01 3 39374588 39374588 G A CCR8 Missense_Mutation p.V256M 0.33 deleterious(0.04) benign(0.21) TCGA-ND-A4WC-01 3 39449160 39449160 G A RPSA Missense_Mutation p.D6N 0.50 tolerated(0.1) benign(0.004) TCGA-ND-A4WC-01 3 39452695 39452695 A C RPSA Intron 0.41 TCGA-ND-A4WC-01 3 40528772 40528772 G T ZNF619 Missense_Mutation p.E297D 0.30 deleterious(0.04) probably_damaging(0.957) TCGA-ND-A4WC-01 3 40558152 40558152 G A ZNF620 Missense_Mutation p.R356Q 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-ND-A4WC-01 3 40574146 40574146 G A ZNF621 Silent p.E295E 0.31 TCGA-ND-A4WC-01 3 424189 424189 G T CHL1 Nonsense_Mutation p.E671* 0.26 TCGA-ND-A4WC-01 3 42799615 42799615 A C CCDC13 Splice_Site p.X74_splice 0.34 TCGA-ND-A4WC-01 3 42916604 42916604 G T CYP8B1 Silent p.L235L 0.39 TCGA-ND-A4WC-01 3 43344729 43344729 A C SNRK Missense_Mutation p.I12L 0.12 deleterious(0.03) benign(0.239) TCGA-ND-A4WC-01 3 44489458 44489458 G T ZNF445 Missense_Mutation p.L569I 0.32 tolerated(0.26) benign(0.364) TCGA-ND-A4WC-01 3 44489996 44489996 T G ZNF445 Missense_Mutation p.E389D 0.36 tolerated(0.16) benign(0.217) TCGA-ND-A4WC-01 3 44684747 44684747 C T ZNF197 Nonsense_Mutation p.R709* 0.43 TCGA-ND-A4WC-01 3 44685303 44685303 G T ZNF197 Missense_Mutation p.R894I 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-ND-A4WC-01 3 44763971 44763971 C A ZNF502 3'UTR 0.39 TCGA-ND-A4WC-01 3 44948523 44948523 C A TGM4 Missense_Mutation p.F386L 0.40 deleterious(0.01) possibly_damaging(0.808) TCGA-ND-A4WC-01 3 44955154 44955154 C A TGM4 Silent p.V664V 0.11 TCGA-ND-A4WC-01 3 44986746 44986746 G A ZDHHC3 Silent p.I115I 0.40 TCGA-ND-A4WC-01 3 45537860 45537860 A G LARS2 Silent p.P539P 0.31 TCGA-ND-A4WC-01 3 45763501 45763501 C T SACM1L Missense_Mutation p.S230L 0.44 tolerated(0.23) benign(0.013) TCGA-ND-A4WC-01 3 45817310 45817310 G A SLC6A20 Silent p.L175L 0.50 TCGA-ND-A4WC-01 3 46307386 46307386 C T CCR3 Missense_Mutation p.A267V 0.32 tolerated(0.52) benign(0.001) TCGA-ND-A4WC-01 3 46415317 46415317 C A CCR5 Silent p.L308L 0.38 TCGA-ND-A4WC-01 3 46497452 46497452 A C LTF Nonsense_Mutation p.Y111* 0.24 TCGA-ND-A4WC-01 3 46560462 46560462 T C LRRC2 3'UTR 0.33 TCGA-ND-A4WC-01 3 46874577 46874577 C T PRSS42 Missense_Mutation p.R164Q 0.40 tolerated(0.75) benign(0.015) TCGA-ND-A4WC-01 3 47103827 47103827 C T SETD2 Missense_Mutation p.R2040Q 0.33 deleterious(0) probably_damaging(0.986) TCGA-ND-A4WC-01 3 47537550 47537550 G T ELP6 3'UTR 0.30 TCGA-ND-A4WC-01 3 47618877 47618877 G A CSPG5 Silent p.F213F 0.25 TCGA-ND-A4WC-01 3 48310236 48310236 G T ZNF589 Missense_Mutation p.R352I 0.24 deleterious(0.02) benign(0.038) TCGA-ND-A4WC-01 3 48502155 48502155 T G ATRIP Missense_Mutation p.L568V 0.31 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 3 4854917 4854917 A C ITPR1 Missense_Mutation p.E2505D 0.09 tolerated(0.49) benign(0.001) TCGA-ND-A4WC-01 3 48630293 48630293 G A COL7A1 Missense_Mutation p.A254V 0.38 unknown(0) TCGA-ND-A4WC-01 3 48630635 48630635 G T COL7A1 Missense_Mutation p.F194L 0.12 unknown(0) TCGA-ND-A4WC-01 3 48699046 48699046 C T CELSR3 Missense_Mutation p.G341D 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-ND-A4WC-01 3 49570157 49570157 A C DAG1 Missense_Mutation p.D738A 0.31 tolerated(0.8) benign(0.438) TCGA-ND-A4WC-01 3 49946481 49946481 T C MON1A Missense_Mutation p.D642G 0.42 deleterious(0.02) probably_damaging(0.986) TCGA-ND-A4WC-01 3 50255384 50255384 C T SLC38A3 RNA 0.22 TCGA-ND-A4WC-01 3 50382591 50382591 G A ZMYND10 Silent p.G55G 0.26 TCGA-ND-A4WC-01 3 51413217 51413217 C T DOCK3 Silent p.V1817V 0.29 TCGA-ND-A4WC-01 3 51500889 51500889 C T VPRBP Missense_Mutation p.R64Q 0.48 deleterious(0) probably_damaging(0.973) TCGA-ND-A4WC-01 3 51517794 51517794 C T VPRBP Silent p.L17L 0.33 TCGA-ND-A4WC-01 3 51749334 51749334 C T GRM2 Silent p.G515G 0.42 TCGA-ND-A4WC-01 3 51928930 51928930 A G IQCF1 Silent p.C198C 0.37 TCGA-ND-A4WC-01 3 52283790 52283790 T G PPM1M Missense_Mutation p.I235S 0.15 deleterious(0) probably_damaging(0.94) TCGA-ND-A4WC-01 3 52469702 52469702 C T SEMA3G Missense_Mutation p.A756T 0.07 tolerated(0.14) benign(0.097) TCGA-ND-A4WC-01 3 5255095 5255095 G A EDEM1 Missense_Mutation p.R591Q 0.31 deleterious(0.03) possibly_damaging(0.611) TCGA-ND-A4WC-01 3 52610695 52610695 G A PBRM1 Nonsense_Mutation p.R1160* 0.26 TCGA-ND-A4WC-01 3 52643768 52643768 G A PBRM1 Nonsense_Mutation p.R710* 0.24 TCGA-ND-A4WC-01 3 53764549 53764549 G T CACNA1D Nonsense_Mutation p.E788* 0.27 TCGA-ND-A4WC-01 3 53783418 53783418 C A CACNA1D Silent p.I1166I 0.15 TCGA-ND-A4WC-01 3 53904164 53904164 C T ACTR8 Missense_Mutation p.D526N 0.28 deleterious(0.01) possibly_damaging(0.629) TCGA-ND-A4WC-01 3 54604114 54604114 T G CACNA2D3 Missense_Mutation p.F291V 0.09 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 3 54676264 54676264 G A CACNA2D3 Missense_Mutation p.R388Q 0.33 tolerated(0.1) probably_damaging(0.971) TCGA-ND-A4WC-01 3 56468777 56468777 T G ERC2 Missense_Mutation p.N87H 0.32 tolerated(0.29) benign(0.396) TCGA-ND-A4WC-01 3 56468995 56468995 C T ERC2 Missense_Mutation p.S14N 0.14 tolerated(0.06) probably_damaging(0.914) TCGA-ND-A4WC-01 3 56655452 56655452 T G FAM208A 3'Flank 0.29 TCGA-ND-A4WC-01 3 56680718 56680718 C A FAM208A Nonsense_Mutation p.E683* 0.29 TCGA-ND-A4WC-01 3 58639451 58639451 C T FAM3D Missense_Mutation p.R24Q 0.29 tolerated(0.87) benign(0.026) TCGA-ND-A4WC-01 3 62423848 62423848 G A CADPS Silent p.F1236F 0.35 TCGA-ND-A4WC-01 3 62477118 62477118 T G CADPS Missense_Mutation p.Q974H 0.14 tolerated(0.13) benign(0.216) TCGA-ND-A4WC-01 3 62535683 62535683 G A CADPS Missense_Mutation p.R621W 0.35 deleterious(0) possibly_damaging(0.745) TCGA-ND-A4WC-01 3 64084736 64084736 G T PRICKLE2 Silent p.I842I 0.23 TCGA-ND-A4WC-01 3 64085004 64085004 G A PRICKLE2 Missense_Mutation p.S753L 0.54 deleterious(0) possibly_damaging(0.88) TCGA-ND-A4WC-01 3 66434631 66434631 C T LRIG1 Missense_Mutation p.E619K 0.30 deleterious(0) probably_damaging(0.95) TCGA-ND-A4WC-01 3 68929922 68929922 T G FAM19A4 Missense_Mutation p.K30T 0.30 tolerated(0.39) benign(0.002) TCGA-ND-A4WC-01 3 71008510 71008510 T C FOXP1 Missense_Mutation p.D643G 0.32 deleterious(0.04) probably_damaging(0.958) TCGA-ND-A4WC-01 3 71021810 71021810 A C FOXP1 Missense_Mutation p.N518K 0.39 deleterious(0) probably_damaging(0.973) TCGA-ND-A4WC-01 3 73114163 73114163 G A PPP4R2 Missense_Mutation p.E267K 0.27 deleterious(0.03) benign(0.241) TCGA-ND-A4WC-01 3 74570269 74570269 A G CNTN3 5'UTR 0.48 TCGA-ND-A4WC-01 3 7494314 7494314 G T GRM7 Missense_Mutation p.D399Y 0.18 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 3 7620981 7620981 G A GRM7 Silent p.T796T 0.43 TCGA-ND-A4WC-01 3 77645854 77645854 A G ROBO2 Missense_Mutation p.N952S 0.38 tolerated(0.24) benign(0.292) TCGA-ND-A4WC-01 3 8667970 8667970 C T SSUH2 Missense_Mutation p.A238T 0.35 tolerated(0.26) benign(0.034) TCGA-ND-A4WC-01 3 8809319 8809319 G A OXTR Silent p.F185F 0.45 TCGA-ND-A4WC-01 3 89259557 89259557 C A EPHA3 Missense_Mutation p.S234Y 0.19 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 3 89478270 89478270 A C EPHA3 Missense_Mutation p.I697L 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-ND-A4WC-01 3 89480399 89480399 G T EPHA3 Missense_Mutation p.D746Y 0.39 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 3 8981263 8981263 C T RAD18 Missense_Mutation p.E227K 0.22 tolerated(0.05) possibly_damaging(0.509) TCGA-ND-A4WC-01 3 93605179 93605179 C T PROS1 Splice_Site p.X441_splice 0.20 TCGA-ND-A4WC-01 3 93617309 93617309 C A PROS1 Missense_Mutation p.D278Y 0.39 deleterious(0) probably_damaging(0.95) TCGA-ND-A4WC-01 3 9489440 9489440 G A SETD5 Missense_Mutation p.R618Q 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-ND-A4WC-01 3 97198185 97198185 G T EPHA6 Missense_Mutation p.R684I 0.18 tolerated(0.35) probably_damaging(0.951) TCGA-ND-A4WC-01 3 97618005 97618005 C A CRYBG3 Missense_Mutation p.F675L 0.42 tolerated(0.42) benign(0.326) TCGA-ND-A4WC-01 3 97655650 97655650 C A CRYBG3 Silent p.S853S 0.42 TCGA-ND-A4WC-01 3 98188675 98188675 C A OR5K1 Missense_Mutation p.F85L 0.32 tolerated(0.13) benign(0.004) TCGA-ND-A4WC-01 3 98188696 98188696 T G OR5K1 Missense_Mutation p.I92M 0.38 deleterious(0.04) benign(0.02) TCGA-ND-A4WC-01 3 98237781 98237781 C A CLDND1 Missense_Mutation p.E140D 0.24 tolerated(0.36) possibly_damaging(0.7) TCGA-ND-A4WC-01 3 98251633 98251633 C A GPR15 Silent p.V252V 0.32 TCGA-ND-A4WC-01 3 9883747 9883747 C T RPUSD3 Silent p.T109T 0.43 TCGA-ND-A4WC-01 4 100129875 100129875 C T ADH6 Missense_Mutation p.D260N 0.30 tolerated(0.46) benign(0.005) TCGA-ND-A4WC-01 4 100130081 100130081 G T ADH6 Missense_Mutation p.T191N 0.08 tolerated(0.06) possibly_damaging(0.821) TCGA-ND-A4WC-01 4 100235062 100235062 C A ADH1B Missense_Mutation p.K248N 0.31 tolerated(0.31) benign(0.002) TCGA-ND-A4WC-01 4 100257772 100257772 C A ADH1C 3'UTR 0.38 TCGA-ND-A4WC-01 4 100544043 100544043 G A MTTP 3'UTR 0.44 TCGA-ND-A4WC-01 4 103499961 103499961 T G NFKB1 Intron 0.38 TCGA-ND-A4WC-01 4 103747773 103747773 A C UBE2D3 Intron 0.37 TCGA-ND-A4WC-01 4 103867923 103867923 T C SLC9B1 Missense_Mutation p.I136V 0.33 tolerated(0.14) benign(0.05) TCGA-ND-A4WC-01 4 103947407 103947407 G T SLC9B2 3'UTR 0.40 TCGA-ND-A4WC-01 4 104003288 104003288 C T BDH2 Missense_Mutation p.A212T 0.29 deleterious(0) possibly_damaging(0.846) TCGA-ND-A4WC-01 4 104061119 104061119 A C CENPE Missense_Mutation p.L2011V 0.31 benign(0.009) TCGA-ND-A4WC-01 4 10515153 10515153 C T CLNK Missense_Mutation p.E281K 0.24 tolerated(0.17) benign(0.013) TCGA-ND-A4WC-01 4 106158562 106158562 T C TET2 Intron 0.34 TCGA-ND-A4WC-01 4 106879674 106879674 A G NPNT Silent p.E432E 0.28 TCGA-ND-A4WC-01 4 107252909 107252909 C T AIMP1 Nonsense_Mutation p.R182* 0.35 TCGA-ND-A4WC-01 4 108955655 108955655 G A HADH 3'UTR 0.30 TCGA-ND-A4WC-01 4 109543322 109543322 A C RPL34 Missense_Mutation p.K43Q 0.33 deleterious(0.01) benign(0.028) TCGA-ND-A4WC-01 4 110864438 110864438 C A EGF Missense_Mutation p.S119Y 0.31 deleterious(0) probably_damaging(0.968) TCGA-ND-A4WC-01 4 110865047 110865047 C A EGF Missense_Mutation p.L187I 0.21 tolerated(0.06) benign(0.303) TCGA-ND-A4WC-01 4 110932640 110932640 G T EGF 3'UTR 0.32 TCGA-ND-A4WC-01 4 113199456 113199456 C A TIFA Missense_Mutation p.E39D 0.38 tolerated(0.08) benign(0.025) TCGA-ND-A4WC-01 4 113352752 113352752 C A ALPK1 Missense_Mutation p.F683L 0.42 tolerated(0.68) benign(0.001) TCGA-ND-A4WC-01 4 113436535 113436535 G A NEUROG2 Silent p.L33L 0.25 TCGA-ND-A4WC-01 4 113540667 113540667 C T C4orf21 Silent p.E177E 0.35 TCGA-ND-A4WC-01 4 114095638 114095638 C A ANK2 Missense_Mutation p.L51M 0.31 probably_damaging(1) TCGA-ND-A4WC-01 4 114275856 114275856 C T ANK2 Missense_Mutation p.R2028W 0.39 probably_damaging(0.969) TCGA-ND-A4WC-01 4 114680550 114680550 C T CAMK2D Missense_Mutation p.R29K 0.29 tolerated_low_confidence(0.08) benign(0.007) TCGA-ND-A4WC-01 4 114824392 114824392 C T ARSJ Missense_Mutation p.E280K 0.45 tolerated(0.8) benign(0.227) TCGA-ND-A4WC-01 4 115544196 115544196 T C UGT8 Missense_Mutation p.F54L 0.26 tolerated(0.71) benign(0.016) TCGA-ND-A4WC-01 4 115792003 115792003 T G NDST4 Missense_Mutation p.K547T 0.39 deleterious(0.01) benign(0.01) TCGA-ND-A4WC-01 4 119952573 119952573 G A SYNPO2 Silent p.S881S 0.33 TCGA-ND-A4WC-01 4 119978690 119978690 A C SYNPO2 Silent p.P1129P 0.26 TCGA-ND-A4WC-01 4 121675763 121675763 T C PRDM5 Missense_Mutation p.E523G 0.44 tolerated(1) benign(0.038) TCGA-ND-A4WC-01 4 121720877 121720877 T G PRDM5 Missense_Mutation p.Q323H 0.34 tolerated(0.13) benign(0.009) TCGA-ND-A4WC-01 4 121742491 121742491 T G PRDM5 Missense_Mutation p.N104H 0.42 deleterious(0.01) possibly_damaging(0.682) TCGA-ND-A4WC-01 4 122071311 122071311 C A TNIP3 Missense_Mutation p.V263L 0.39 tolerated(0.46) benign(0.003) TCGA-ND-A4WC-01 4 122078361 122078361 C A TNIP3 Missense_Mutation p.R161I 0.23 deleterious(0.01) possibly_damaging(0.804) TCGA-ND-A4WC-01 4 122724127 122724127 G A EXOSC9 Silent p.S113S 0.26 TCGA-ND-A4WC-01 4 122728757 122728757 T C EXOSC9 Silent p.S195S 0.39 TCGA-ND-A4WC-01 4 122749316 122749316 G T BBS7 Missense_Mutation p.L667I 0.12 tolerated(0.08) possibly_damaging(0.728) TCGA-ND-A4WC-01 4 122756435 122756435 G A BBS7 Missense_Mutation p.R459C 0.43 deleterious(0) probably_damaging(0.96) TCGA-ND-A4WC-01 4 122765149 122765149 A G BBS7 Missense_Mutation p.V413A 0.36 tolerated(0.17) possibly_damaging(0.58) TCGA-ND-A4WC-01 4 122780322 122780322 C A BBS7 Missense_Mutation p.G118V 0.42 deleterious(0) possibly_damaging(0.719) TCGA-ND-A4WC-01 4 123372874 123372874 C T IL2 3'UTR 0.50 TCGA-ND-A4WC-01 4 123533783 123533783 C T IL21 3'UTR 0.36 TCGA-ND-A4WC-01 4 123534041 123534041 C A IL21 Nonsense_Mutation p.E135* 0.36 TCGA-ND-A4WC-01 4 123818759 123818759 A C FGF2 3'UTR 0.34 TCGA-ND-A4WC-01 4 123949434 123949434 C T SPATA5 Nonsense_Mutation p.R655* 0.37 TCGA-ND-A4WC-01 4 124323486 124323486 C T SPRY1 Missense_Mutation p.S247F 0.34 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 4 125592847 125592847 G A ANKRD50 Missense_Mutation p.R529W 0.37 deleterious(0) benign(0.076) TCGA-ND-A4WC-01 4 126239028 126239028 G A FAT4 Missense_Mutation p.A488T 0.26 benign(0.063) TCGA-ND-A4WC-01 4 126240330 126240330 G T FAT4 Nonsense_Mutation p.E922* 0.28 TCGA-ND-A4WC-01 4 126240857 126240857 A G FAT4 Silent p.R1097R 0.14 TCGA-ND-A4WC-01 4 126336725 126336725 C T FAT4 Missense_Mutation p.R2203W 0.31 probably_damaging(0.998) TCGA-ND-A4WC-01 4 126370224 126370224 C T FAT4 Nonsense_Mutation p.R2685* 0.42 TCGA-ND-A4WC-01 4 126370783 126370783 G A FAT4 Missense_Mutation p.R2871K 0.47 probably_damaging(0.989) TCGA-ND-A4WC-01 4 126371571 126371571 G T FAT4 Nonsense_Mutation p.E3134* 0.20 TCGA-ND-A4WC-01 4 126411468 126411468 G T FAT4 Missense_Mutation p.E4497D 0.39 benign(0.115) TCGA-ND-A4WC-01 4 128605632 128605632 C A INTU Missense_Mutation p.S417Y 0.44 deleterious(0.01) benign(0.399) TCGA-ND-A4WC-01 4 128814548 128814548 A C PLK4 Missense_Mutation p.K766T 0.25 deleterious(0.02) benign(0.008) TCGA-ND-A4WC-01 4 1345579 1345579 A C UVSSA Missense_Mutation p.K169T 0.25 tolerated(0.2) benign(0.101) TCGA-ND-A4WC-01 4 13603706 13603706 G A BOD1L1 Silent p.F1606F 0.35 TCGA-ND-A4WC-01 4 13605283 13605283 C A BOD1L1 Nonsense_Mutation p.E1081* 0.20 TCGA-ND-A4WC-01 4 139101830 139101830 G A SLC7A11 Nonsense_Mutation p.R411* 0.33 TCGA-ND-A4WC-01 4 139980462 139980462 A C ELF2 Missense_Mutation p.I474S 0.36 deleterious(0) possibly_damaging(0.454) TCGA-ND-A4WC-01 4 140201345 140201345 T C MGARP 5'UTR 0.33 TCGA-ND-A4WC-01 4 140258010 140258010 G T NAA15 Missense_Mutation p.A50S 0.50 tolerated(0.09) possibly_damaging(0.818) TCGA-ND-A4WC-01 4 140262166 140262166 A C NAA15 Missense_Mutation p.Q115H 0.37 tolerated(0.05) benign(0.12) TCGA-ND-A4WC-01 4 141302251 141302251 G T SCOC Missense_Mutation p.R158I 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ND-A4WC-01 4 141789419 141789419 G T RNF150 Missense_Mutation p.S438Y 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ND-A4WC-01 4 143159024 143159024 A C INPP4B Missense_Mutation p.L277V 0.44 tolerated(0.35) benign(0.138) TCGA-ND-A4WC-01 4 144381598 144381598 G T GAB1 Missense_Mutation p.E617D 0.14 deleterious(0.03) possibly_damaging(0.54) TCGA-ND-A4WC-01 4 146058848 146058848 C A OTUD4 Nonsense_Mutation p.E962* 0.32 TCGA-ND-A4WC-01 4 147830222 147830222 T G TTC29 Missense_Mutation p.Y119S 0.13 tolerated(0.07) benign(0.007) TCGA-ND-A4WC-01 4 148796274 148796274 G A ARHGAP10 Missense_Mutation p.E269K 0.08 deleterious(0) benign(0.212) TCGA-ND-A4WC-01 4 149181258 149181258 C T NR3C2 Missense_Mutation p.R590Q 0.27 deleterious(0.01) benign(0.238) TCGA-ND-A4WC-01 4 151023816 151023816 G A DCLK2 Missense_Mutation p.R203Q 0.12 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 4 151765812 151765812 T C LRBA Missense_Mutation p.K1487E 0.42 tolerated(0.17) probably_damaging(0.991) TCGA-ND-A4WC-01 4 151774084 151774084 T G LRBA Missense_Mutation p.E926D 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-ND-A4WC-01 4 151821337 151821337 C T LRBA Silent p.T596T 0.36 TCGA-ND-A4WC-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.39 TCGA-ND-A4WC-01 4 154271250 154271250 G T MND1 Missense_Mutation p.R13I 0.19 deleterious(0) probably_damaging(0.95) TCGA-ND-A4WC-01 4 154625574 154625574 A C TLR2 Missense_Mutation p.K505N 0.39 tolerated(0.29) benign(0.006) TCGA-ND-A4WC-01 4 155156193 155156193 G T DCHS2 Missense_Mutation p.S2749Y 0.38 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 4 155180752 155180752 C A DCHS2 Missense_Mutation p.S1790I 0.36 deleterious(0) possibly_damaging(0.59) TCGA-ND-A4WC-01 4 155253722 155253722 A C DCHS2 Missense_Mutation p.I714S 0.39 deleterious(0) possibly_damaging(0.754) TCGA-ND-A4WC-01 4 155312322 155312322 G T DCHS2 Missense_Mutation p.S43Y 0.14 deleterious_low_confidence(0.02) benign(0.002) TCGA-ND-A4WC-01 4 155490690 155490690 A C FGB Missense_Mutation p.K328T 0.11 deleterious(0.04) benign(0.401) TCGA-ND-A4WC-01 4 155505567 155505567 G A FGA Silent p.S770S 0.31 TCGA-ND-A4WC-01 4 155529776 155529776 C A FGG Missense_Mutation p.K231N 0.32 tolerated(0.57) benign(0.07) TCGA-ND-A4WC-01 4 155533543 155533543 G A FGG Silent p.F41F 0.07 TCGA-ND-A4WC-01 4 156294345 156294345 C A MAP9 Missense_Mutation p.D142Y 0.40 deleterious(0) possibly_damaging(0.648) TCGA-ND-A4WC-01 4 15642453 15642453 A C FBXL5 Silent p.A118A 0.20 TCGA-ND-A4WC-01 4 15646324 15646324 T G FBXL5 Missense_Mutation p.K31T 0.52 tolerated(0.29) benign(0.242) TCGA-ND-A4WC-01 4 159573227 159573227 C T RXFP1 3'UTR 0.27 TCGA-ND-A4WC-01 4 159627345 159627345 C T ETFDH Silent p.L430L 0.29 TCGA-ND-A4WC-01 4 162841649 162841649 C A FSTL5 Nonsense_Mutation p.E106* 0.40 TCGA-ND-A4WC-01 4 164272343 164272343 G T NPY5R Missense_Mutation p.E306D 0.28 tolerated(0.61) benign(0.001) TCGA-ND-A4WC-01 4 164392978 164392978 G A TKTL2 3'UTR 0.24 TCGA-ND-A4WC-01 4 169086427 169086427 T C ANXA10 Missense_Mutation p.Y144H 0.33 tolerated(0.25) benign(0.073) TCGA-ND-A4WC-01 4 169201497 169201497 C T DDX60 Missense_Mutation p.R656Q 0.32 tolerated(0.29) benign(0.01) TCGA-ND-A4WC-01 4 169300626 169300626 C A DDX60L Missense_Mutation p.K1417N 0.19 deleterious(0.03) benign(0.119) TCGA-ND-A4WC-01 4 169317216 169317216 T G DDX60L Missense_Mutation p.E1184A 0.34 deleterious(0.04) benign(0.394) TCGA-ND-A4WC-01 4 1698041 1698041 T G SLBP Missense_Mutation p.N173H 0.22 deleterious(0) probably_damaging(0.982) TCGA-ND-A4WC-01 4 175564915 175564915 G A GLRA3 3'UTR 0.38 TCGA-ND-A4WC-01 4 175565138 175565138 C A GLRA3 Missense_Mutation p.M398I 0.26 tolerated(0.52) benign(0) TCGA-ND-A4WC-01 4 177113898 177113898 C A SPATA4 Missense_Mutation p.D190Y 0.23 deleterious(0) probably_damaging(0.974) TCGA-ND-A4WC-01 4 177114180 177114180 T C SPATA4 Silent p.G132G 0.38 TCGA-ND-A4WC-01 4 17805494 17805494 G A DCAF16 Nonsense_Mutation p.R91* 0.37 TCGA-ND-A4WC-01 4 17824682 17824682 G T NCAPG Nonsense_Mutation p.E399* 0.31 TCGA-ND-A4WC-01 4 183714933 183714933 G T TENM3 Nonsense_Mutation p.E2370* 0.25 TCGA-ND-A4WC-01 4 184431545 184431545 G T ING2 Nonsense_Mutation p.E95* 0.32 TCGA-ND-A4WC-01 4 184598657 184598657 G T TRAPPC11 Nonsense_Mutation p.E261* 0.16 TCGA-ND-A4WC-01 4 185580506 185580506 T C PRIMPOL Missense_Mutation p.F65L 0.44 possibly_damaging(0.632) TCGA-ND-A4WC-01 4 185593505 185593505 G A PRIMPOL Silent p.S245S 0.37 TCGA-ND-A4WC-01 4 185681620 185681620 T C ACSL1 Missense_Mutation p.H558R 0.33 deleterious(0) benign(0.085) TCGA-ND-A4WC-01 4 185697685 185697685 G A ACSL1 Nonsense_Mutation p.R237* 0.33 TCGA-ND-A4WC-01 4 186111423 186111423 T G KIAA1430 Missense_Mutation p.K310Q 0.35 tolerated(0.27) possibly_damaging(0.717) TCGA-ND-A4WC-01 4 186380484 186380484 G A CCDC110 Silent p.S419S 0.24 TCGA-ND-A4WC-01 4 186535983 186535983 A G SORBS2 Splice_Site p.X1061_splice 0.31 TCGA-ND-A4WC-01 4 187120134 187120134 G T CYP4V2 Missense_Mutation p.R233I 0.26 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 4 187175855 187175855 A C KLKB1 Missense_Mutation p.K476T 0.40 tolerated(0.16) benign(0.157) TCGA-ND-A4WC-01 4 187509932 187509932 G A FAT1 Silent p.F4527F 0.36 TCGA-ND-A4WC-01 4 187539012 187539012 C T FAT1 Missense_Mutation p.D2910N 0.14 probably_damaging(1) TCGA-ND-A4WC-01 4 187542357 187542357 G A FAT1 Nonsense_Mutation p.R1795* 0.36 TCGA-ND-A4WC-01 4 189022278 189022278 C A TRIML2 Nonsense_Mutation p.E88* 0.40 TCGA-ND-A4WC-01 4 189061694 189061694 G A TRIML1 Missense_Mutation p.E141K 0.34 deleterious(0.02) benign(0.345) TCGA-ND-A4WC-01 4 189064833 189064833 G T TRIML1 Intron 0.20 TCGA-ND-A4WC-01 4 189064977 189064977 C A TRIML1 Intron 0.35 TCGA-ND-A4WC-01 4 20525762 20525762 G T SLIT2 Missense_Mutation p.R467I 0.26 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 4 20734383 20734383 A C KCNIP4 Missense_Mutation p.I188R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 4 20852208 20852208 A C KCNIP4 Missense_Mutation p.F82L 0.37 deleterious(0) benign(0.028) TCGA-ND-A4WC-01 4 2210083 2210083 T G POLN Silent p.S115S 0.38 TCGA-ND-A4WC-01 4 2230759 2230759 T G HAUS3 3'UTR 0.42 TCGA-ND-A4WC-01 4 22390389 22390389 C T GPR125 Missense_Mutation p.E969K 0.40 tolerated(0.84) benign(0.196) TCGA-ND-A4WC-01 4 2242595 2242595 A C HAUS3 Missense_Mutation p.F27V 0.10 deleterious(0) probably_damaging(0.977) TCGA-ND-A4WC-01 4 23815615 23815615 T C PPARGC1A Silent p.L497L 0.38 TCGA-ND-A4WC-01 4 23886264 23886264 C A PPARGC1A Intron 0.33 TCGA-ND-A4WC-01 4 25418156 25418156 T C ANAPC4 Silent p.L671L 0.27 TCGA-ND-A4WC-01 4 26483533 26483533 G A CCKAR Silent p.Y338Y 0.32 TCGA-ND-A4WC-01 4 26487334 26487334 G T CCKAR Missense_Mutation p.P184H 0.39 deleterious(0.02) benign(0.314) TCGA-ND-A4WC-01 4 26487340 26487340 A G CCKAR Missense_Mutation p.L182S 0.29 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 4 27003939 27003939 A T STIM2 Missense_Mutation p.K242N 0.29 deleterious(0) possibly_damaging(0.711) TCGA-ND-A4WC-01 4 27003940 27003940 G T STIM2 Nonsense_Mutation p.E243* 0.47 TCGA-ND-A4WC-01 4 2930323 2930323 T C ADD1 3'UTR 0.34 TCGA-ND-A4WC-01 4 3011413 3011413 T C GRK4 Missense_Mutation p.V192A 0.12 deleterious(0) probably_damaging(0.937) TCGA-ND-A4WC-01 4 3449289 3449289 A C HGFAC Missense_Mutation p.T476P 0.32 deleterious(0) probably_damaging(0.909) TCGA-ND-A4WC-01 4 37831647 37831647 G A PGM2 Missense_Mutation p.R48Q 0.45 tolerated(0.37) benign(0.001) TCGA-ND-A4WC-01 4 37851855 37851855 A G PGM2 Missense_Mutation p.E488G 0.24 tolerated(0.35) benign(0) TCGA-ND-A4WC-01 4 38046077 38046077 C A TBC1D1 Missense_Mutation p.S503Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 4 38775278 38775278 G T TLR10 Missense_Mutation p.S645Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 4 38829644 38829644 G T TLR6 Missense_Mutation p.S484Y 0.39 tolerated(1) benign(0.078) TCGA-ND-A4WC-01 4 38829734 38829734 A G TLR6 Missense_Mutation p.V454A 0.41 deleterious(0.02) benign(0.367) TCGA-ND-A4WC-01 4 39313115 39313115 G A RFC1 Missense_Mutation p.R480W 0.43 deleterious(0) probably_damaging(0.938) TCGA-ND-A4WC-01 4 39482879 39482879 C T LIAS 3'Flank 0.34 TCGA-ND-A4WC-01 4 40103707 40103707 T C N4BP2 Missense_Mutation p.M81T 0.32 deleterious(0) probably_damaging(0.98) TCGA-ND-A4WC-01 4 41621302 41621302 G A LIMCH1 Silent p.P260P 0.40 TCGA-ND-A4WC-01 4 41691559 41691559 G T LIMCH1 Missense_Mutation p.K1010N 0.18 deleterious(0) possibly_damaging(0.723) TCGA-ND-A4WC-01 4 41984734 41984734 G A DCAF4L1 Missense_Mutation p.E309K 0.33 tolerated(0.58) benign(0.021) TCGA-ND-A4WC-01 4 42024887 42024887 G A SLC30A9 Missense_Mutation p.R156Q 0.37 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 4 43032511 43032511 C T GRXCR1 Missense_Mutation p.A276V 0.40 tolerated(0.27) benign(0.003) TCGA-ND-A4WC-01 4 435658 435658 T C ZNF721 Silent p.T866T 0.42 TCGA-ND-A4WC-01 4 436594 436594 C A ZNF721 Missense_Mutation p.E554D 0.35 deleterious(0.04) possibly_damaging(0.538) TCGA-ND-A4WC-01 4 44176933 44176933 C T KCTD8 Silent p.E432E 0.36 TCGA-ND-A4WC-01 4 46995427 46995427 C A GABRA4 Missense_Mutation p.K5N 0.36 tolerated_low_confidence(0.09) benign(0.117) TCGA-ND-A4WC-01 4 47840061 47840061 C A CORIN 5'Flank 0.24 TCGA-ND-A4WC-01 4 47939204 47939204 T G CNGA1 Missense_Mutation p.K505T 0.09 deleterious(0.03) possibly_damaging(0.868) TCGA-ND-A4WC-01 4 48139468 48139468 C A TEC Nonsense_Mutation p.E621* 0.41 TCGA-ND-A4WC-01 4 48178116 48178116 T G TEC Missense_Mutation p.N76H 0.34 tolerated(0.34) possibly_damaging(0.815) TCGA-ND-A4WC-01 4 5018861 5018861 C T CYTL1 Splice_Site p.X66_splice 0.33 TCGA-ND-A4WC-01 4 54967832 54967832 G T GSX2 Nonsense_Mutation p.E220* 0.18 TCGA-ND-A4WC-01 4 55561832 55561832 G A KIT Silent p.T74T 0.44 TCGA-ND-A4WC-01 4 55594177 55594177 C T KIT Missense_Mutation p.P627L 0.33 deleterious(0) probably_damaging(0.971) TCGA-ND-A4WC-01 4 55602731 55602731 A G KIT Missense_Mutation p.D851G 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-ND-A4WC-01 4 5564756 5564756 A T EVC2 Missense_Mutation p.I1249N 0.29 tolerated(0.36) benign(0.391) TCGA-ND-A4WC-01 4 55946184 55946184 A C KDR Missense_Mutation p.I1332S 0.33 tolerated(0.69) benign(0.001) TCGA-ND-A4WC-01 4 55968605 55968605 G T KDR Silent p.V686V 0.30 TCGA-ND-A4WC-01 4 56230296 56230296 C T SRD5A3 Silent p.S140S 0.34 TCGA-ND-A4WC-01 4 56233805 56233805 C A SRD5A3 Missense_Mutation p.L205I 0.35 tolerated(0.22) possibly_damaging(0.449) TCGA-ND-A4WC-01 4 56730415 56730415 A G EXOC1 Missense_Mutation p.H93R 0.43 tolerated(0.1) benign(0.04) TCGA-ND-A4WC-01 4 56738059 56738059 A G EXOC1 Missense_Mutation p.S337G 0.37 tolerated(0.21) benign(0) TCGA-ND-A4WC-01 4 56878113 56878113 C T CEP135 Nonsense_Mutation p.R922* 0.27 TCGA-ND-A4WC-01 4 57180406 57180406 A G KIAA1211 Silent p.R246R 0.33 TCGA-ND-A4WC-01 4 57181891 57181891 A C KIAA1211 Missense_Mutation p.E741D 0.32 tolerated(0.62) benign(0.388) TCGA-ND-A4WC-01 4 57797479 57797479 G T REST Missense_Mutation p.D819Y 0.39 deleterious(0) possibly_damaging(0.498) TCGA-ND-A4WC-01 4 57843010 57843010 T G NOA1 Missense_Mutation p.N248H 0.27 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 4 57883789 57883789 T G POLR2B Missense_Mutation p.F740V 0.24 deleterious(0) possibly_damaging(0.794) TCGA-ND-A4WC-01 4 5961108 5961108 T G C4orf50 Missense_Mutation p.E749D 0.38 tolerated_low_confidence(0.13) benign(0.261) TCGA-ND-A4WC-01 4 6114583 6114583 C T JAKMIP1 5'UTR 0.34 TCGA-ND-A4WC-01 4 654306 654306 C A PDE6B Missense_Mutation p.F506L 0.37 deleterious(0) probably_damaging(0.935) TCGA-ND-A4WC-01 4 66201816 66201816 G A EPHA5 Missense_Mutation p.R896C 0.28 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 4 6623095 6623095 C T MAN2B2 3'UTR 0.35 TCGA-ND-A4WC-01 4 66361152 66361152 C A EPHA5 Missense_Mutation p.K340N 0.37 tolerated(0.73) benign(0.01) TCGA-ND-A4WC-01 4 68372634 68372634 C T CENPC Silent p.K641K 0.23 TCGA-ND-A4WC-01 4 6843914 6843914 C T KIAA0232 Nonsense_Mutation p.R118* 0.34 TCGA-ND-A4WC-01 4 69535816 69535816 C T UGT2B15 Missense_Mutation p.R174Q 0.06 deleterious(0.01) benign(0.298) TCGA-ND-A4WC-01 4 69536087 69536087 T G UGT2B15 Missense_Mutation p.N84H 0.41 tolerated(0.09) benign(0.014) TCGA-ND-A4WC-01 4 69693266 69693266 C T UGT2B10 Missense_Mutation p.S436L 0.33 tolerated(0.19) benign(0.026) TCGA-ND-A4WC-01 4 70346621 70346621 C A UGT2B4 Nonsense_Mutation p.E440* 0.29 TCGA-ND-A4WC-01 4 71264993 71264993 A C PROL1 5'UTR 0.23 TCGA-ND-A4WC-01 4 71398215 71398215 G A AMTN 3'UTR 0.38 TCGA-ND-A4WC-01 4 71472354 71472354 G A AMBN Silent p.T417T 0.36 TCGA-ND-A4WC-01 4 71507979 71507979 C T ENAM Missense_Mutation p.T279I 0.13 tolerated(0.13) benign(0.209) TCGA-ND-A4WC-01 4 72631284 72631284 G T GC Missense_Mutation p.T132N 0.29 deleterious(0.02) benign(0.088) TCGA-ND-A4WC-01 4 73161417 73161417 T C ADAMTS3 Missense_Mutation p.K893E 0.14 tolerated(0.06) benign(0.145) TCGA-ND-A4WC-01 4 73188757 73188757 G A ADAMTS3 Missense_Mutation p.R307C 0.33 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 4 74283943 74283943 C T ALB Missense_Mutation p.P523S 0.37 deleterious(0.02) possibly_damaging(0.699) TCGA-ND-A4WC-01 4 75971446 75971446 G T PARM1 Missense_Mutation p.D308Y 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 4 77036423 77036423 T G NUP54 3'UTR 0.56 TCGA-ND-A4WC-01 4 77036593 77036593 C A NUP54 Missense_Mutation p.D484Y 0.13 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 4 77053689 77053689 C T NUP54 Silent p.Q298Q 0.41 TCGA-ND-A4WC-01 4 77700186 77700186 C A SHROOM3 Silent p.V1949V 0.34 TCGA-ND-A4WC-01 4 77969638 77969638 A G CCNI Missense_Mutation p.S290P 0.41 tolerated(0.35) benign(0.009) TCGA-ND-A4WC-01 4 7844978 7844978 T C AFAP1 Missense_Mutation p.E145G 0.24 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 4 79845024 79845024 C T PAQR3 Silent p.E260E 0.50 TCGA-ND-A4WC-01 4 83280639 83280639 C T HNRNPD Silent p.S148S 0.36 TCGA-ND-A4WC-01 4 83839057 83839057 A G THAP9 Silent p.Q564Q 0.41 TCGA-ND-A4WC-01 4 84525994 84525994 T G AGPAT9 3'UTR 0.33 TCGA-ND-A4WC-01 4 85738736 85738736 T G WDFY3 Missense_Mutation p.I566L 0.11 tolerated(0.36) benign(0) TCGA-ND-A4WC-01 4 86478 86478 C A Z95704.2 RNA 0.29 TCGA-ND-A4WC-01 4 86844806 86844806 G A ARHGAP24 Missense_Mutation p.D92N 0.28 deleterious(0) benign(0.002) TCGA-ND-A4WC-01 4 86985420 86985420 G A MAPK10 Missense_Mutation p.A370V 0.30 tolerated(0.11) benign(0.07) TCGA-ND-A4WC-01 4 87622929 87622929 T C PTPN13 Silent p.V390V 0.29 TCGA-ND-A4WC-01 4 87684331 87684331 A C PTPN13 Missense_Mutation p.Q1335H 0.24 tolerated(0.1) benign(0.007) TCGA-ND-A4WC-01 4 87770058 87770058 C T SLC10A6 Missense_Mutation p.G71R 0.27 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 4 87770114 87770114 G A SLC10A6 Missense_Mutation p.S52F 0.24 deleterious(0) probably_damaging(0.986) TCGA-ND-A4WC-01 4 87967346 87967346 C T AFF1 Nonsense_Mutation p.R23* 0.33 TCGA-ND-A4WC-01 4 88400658 88400658 G T SPARCL1 Missense_Mutation p.F630L 0.26 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 4 88766288 88766288 T C MEPE Missense_Mutation p.F90L 0.34 tolerated(0.44) benign(0.034) TCGA-ND-A4WC-01 4 88766449 88766449 C T MEPE Silent p.G143G 0.37 TCGA-ND-A4WC-01 4 89052995 89052995 C T ABCG2 Missense_Mutation p.R113Q 0.20 tolerated(1) benign(0.007) TCGA-ND-A4WC-01 4 89577136 89577136 C A HERC3 Missense_Mutation p.P340H 0.40 tolerated(0.55) possibly_damaging(0.855) TCGA-ND-A4WC-01 4 90816089 90816089 T G MMRN1 5'UTR 0.35 TCGA-ND-A4WC-01 4 90816240 90816240 C T MMRN1 Missense_Mutation p.P40S 0.32 tolerated_low_confidence(0.22) benign(0) TCGA-ND-A4WC-01 4 90856726 90856726 T G MMRN1 Missense_Mutation p.M632R 0.43 deleterious(0) possibly_damaging(0.556) TCGA-ND-A4WC-01 4 90857447 90857447 G A MMRN1 Silent p.T872T 0.37 TCGA-ND-A4WC-01 4 93511403 93511403 T G GRID2 Silent p.V70V 0.30 TCGA-ND-A4WC-01 4 94344033 94344033 G A GRID2 Missense_Mutation p.E487K 0.31 deleterious(0.01) possibly_damaging(0.819) TCGA-ND-A4WC-01 4 95158103 95158103 T G SMARCAD1 Missense_Mutation p.L180V 0.26 tolerated(0.57) benign(0.28) TCGA-ND-A4WC-01 4 95196044 95196044 C A SMARCAD1 Missense_Mutation p.S579Y 0.42 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 4 95200129 95200129 C T SMARCAD1 Silent p.A784A 0.30 TCGA-ND-A4WC-01 4 95201893 95201893 C T SMARCAD1 Nonsense_Mutation p.R859* 0.40 TCGA-ND-A4WC-01 4 99823086 99823086 C T EIF4E Silent p.T22T 0.33 TCGA-ND-A4WC-01 5 100191882 100191882 T C ST8SIA4 Missense_Mutation p.N241S 0.39 possibly_damaging(0.575) TCGA-ND-A4WC-01 5 101576442 101576442 A C SLCO4C1 Missense_Mutation p.F619C 0.34 tolerated(0.06) benign(0.02) TCGA-ND-A4WC-01 5 101583039 101583039 T C SLCO4C1 Silent p.K576K 0.34 TCGA-ND-A4WC-01 5 101593765 101593765 C T SLCO4C1 Missense_Mutation p.M385I 0.23 tolerated(0.98) benign(0.007) TCGA-ND-A4WC-01 5 101627174 101627174 G T SLCO4C1 Missense_Mutation p.F164L 0.39 deleterious(0) possibly_damaging(0.803) TCGA-ND-A4WC-01 5 102442537 102442537 T G GIN1 Missense_Mutation p.K72N 0.25 tolerated(0.11) benign(0.025) TCGA-ND-A4WC-01 5 102519017 102519017 G A PPIP5K2 Missense_Mutation p.R1002Q 0.36 tolerated_low_confidence(0.28) benign(0.345) TCGA-ND-A4WC-01 5 102537329 102537329 G T PPIP5K2 Missense_Mutation p.K1221N 0.41 deleterious_low_confidence(0.01) benign(0.306) TCGA-ND-A4WC-01 5 1057651 1057651 G A SLC12A7 Silent p.I987I 0.38 TCGA-ND-A4WC-01 5 106763211 106763211 C A EFNA5 Splice_Site p.X42_splice 0.37 TCGA-ND-A4WC-01 5 107197556 107197556 G A FBXL17 Silent p.N657N 0.33 TCGA-ND-A4WC-01 5 108523373 108523373 C T FER 3'UTR 0.19 TCGA-ND-A4WC-01 5 109124646 109124646 C T MAN2A1 Missense_Mutation p.S591L 0.34 deleterious(0) possibly_damaging(0.808) TCGA-ND-A4WC-01 5 109202582 109202582 C T MAN2A1 Silent p.V1106V 0.47 TCGA-ND-A4WC-01 5 11018149 11018149 C T CTNND2 Silent p.K1007K 0.16 TCGA-ND-A4WC-01 5 112151216 112151216 G T APC Nonsense_Mutation p.E287* 0.37 TCGA-ND-A4WC-01 5 112175120 112175120 T G APC Missense_Mutation p.L1277V 0.31 probably_damaging(0.999) TCGA-ND-A4WC-01 5 112175861 112175861 A G APC Missense_Mutation p.I1524V 0.35 benign(0.145) TCGA-ND-A4WC-01 5 112177901 112177901 C T APC Nonsense_Mutation p.R2204* 0.30 TCGA-ND-A4WC-01 5 112178190 112178190 C A APC Missense_Mutation p.S2300Y 0.29 probably_damaging(1) TCGA-ND-A4WC-01 5 112179240 112179240 C T APC Missense_Mutation p.A2650V 0.43 possibly_damaging(0.648) TCGA-ND-A4WC-01 5 112227655 112227655 G T ZRSR1 Nonsense_Mutation p.E107* 0.44 TCGA-ND-A4WC-01 5 112238187 112238187 C A REEP5 Nonsense_Mutation p.E81* 0.29 TCGA-ND-A4WC-01 5 112903438 112903438 A C YTHDC2 Missense_Mutation p.I1046L 0.29 tolerated(0.78) benign(0.004) TCGA-ND-A4WC-01 5 112903439 112903439 T C YTHDC2 Missense_Mutation p.I1046T 0.41 tolerated(0.46) benign(0.006) TCGA-ND-A4WC-01 5 115822462 115822462 A C SEMA6A Missense_Mutation p.F315L 0.32 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 5 118484688 118484688 C T DMXL1 Missense_Mutation p.R1056C 0.42 deleterious(0.02) benign(0.176) TCGA-ND-A4WC-01 5 118556647 118556647 C A DMXL1 Missense_Mutation p.F2695L 0.36 deleterious(0.05) probably_damaging(0.998) TCGA-ND-A4WC-01 5 121355981 121355981 C A SRFBP1 Nonsense_Mutation p.S184* 0.31 TCGA-ND-A4WC-01 5 121487801 121487801 C A ZNF474 Missense_Mutation p.S39Y 0.45 deleterious(0.02) benign(0.325) TCGA-ND-A4WC-01 5 121761114 121761114 C T SNCAIP Missense_Mutation p.A357V 0.29 deleterious(0.01) possibly_damaging(0.574) TCGA-ND-A4WC-01 5 122161826 122161826 G A SNX2 Missense_Mutation p.A432T 0.35 deleterious(0.05) benign(0.233) TCGA-ND-A4WC-01 5 122281828 122281828 C T SNX24 Nonsense_Mutation p.R75* 0.31 TCGA-ND-A4WC-01 5 122364544 122364544 C T PPIC Missense_Mutation p.G84E 0.28 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 5 122927093 122927093 A G CSNK1G3 Silent p.Q357Q 0.19 TCGA-ND-A4WC-01 5 123984088 123984089 - T ZNF608 Frame_Shift_Ins p.K664Efs*4 0.25 TCGA-ND-A4WC-01 5 125968261 125968261 G A C5orf48 Missense_Mutation p.R37Q 0.31 tolerated(0.13) benign(0.006) TCGA-ND-A4WC-01 5 126154643 126154643 A G LMNB1 Silent p.E323E 0.41 TCGA-ND-A4WC-01 5 126172037 126172037 G T LMNB1 3'UTR 0.35 TCGA-ND-A4WC-01 5 128864216 128864216 G T ADAMTS19 Nonsense_Mutation p.E386* 0.42 TCGA-ND-A4WC-01 5 132046653 132046653 C T KIF3A Missense_Mutation p.R409K 0.32 tolerated(1) benign(0) TCGA-ND-A4WC-01 5 132086667 132086667 C T CCNI2 Missense_Mutation p.T251M 0.34 deleterious(0.01) probably_damaging(0.979) TCGA-ND-A4WC-01 5 132099413 132099413 C A SEPT8 Missense_Mutation p.K173N 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 132150907 132150907 C T SOWAHA Nonsense_Mutation p.R532* 0.26 TCGA-ND-A4WC-01 5 132197937 132197937 A C GDF9 Missense_Mutation p.F237V 0.39 tolerated(0.27) benign(0.002) TCGA-ND-A4WC-01 5 132424107 132424107 G T HSPA4 Nonsense_Mutation p.E333* 0.42 TCGA-ND-A4WC-01 5 132553062 132553062 G T FSTL4 Silent p.I489I 0.29 TCGA-ND-A4WC-01 5 133481907 133481907 A G TCF7 Intron 0.38 TCGA-ND-A4WC-01 5 134162645 134162645 G T DDX46 Nonsense_Mutation p.E995* 0.23 TCGA-ND-A4WC-01 5 135272504 135272504 A C FBXL21 RNA 0.35 TCGA-ND-A4WC-01 5 135383085 135383085 C T TGFBI Silent p.I249I 0.36 TCGA-ND-A4WC-01 5 137235410 137235410 C A PKD2L2 Missense_Mutation p.L244I 0.58 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 5 137427176 137427176 C A WNT8A 3'UTR 0.31 TCGA-ND-A4WC-01 5 137454535 137454535 A C NME5 Missense_Mutation p.L176R 0.30 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 5 137476564 137476564 C T BRD8 Missense_Mutation p.D1149N 0.30 deleterious(0.01) possibly_damaging(0.639) TCGA-ND-A4WC-01 5 137521258 137521258 T C KIF20A Missense_Mutation p.S662P 0.40 tolerated(0.27) benign(0) TCGA-ND-A4WC-01 5 13753382 13753382 T C DNAH5 Missense_Mutation p.K3611R 0.34 possibly_damaging(0.621) TCGA-ND-A4WC-01 5 13753429 13753429 C T DNAH5 Silent p.T3595T 0.08 TCGA-ND-A4WC-01 5 13766094 13766094 C T DNAH5 Silent p.Q3364Q 0.39 TCGA-ND-A4WC-01 5 137754915 137754915 A G KDM3B Missense_Mutation p.T1237A 0.12 deleterious(0.02) possibly_damaging(0.772) TCGA-ND-A4WC-01 5 137891715 137891715 T G HSPA9 3'UTR 0.35 TCGA-ND-A4WC-01 5 13866373 13866373 C T DNAH5 Missense_Mutation p.G1358S 0.43 possibly_damaging(0.862) TCGA-ND-A4WC-01 5 13871097 13871097 C T DNAH5 Missense_Mutation p.A1205T 0.26 possibly_damaging(0.499) TCGA-ND-A4WC-01 5 1394786 1394786 C T SLC6A3 3'UTR 0.15 TCGA-ND-A4WC-01 5 140057544 140057544 C A HARS Missense_Mutation p.K193N 0.36 deleterious(0.03) probably_damaging(0.98) TCGA-ND-A4WC-01 5 140186715 140186715 G T PCDHA4 5'Flank 0.43 TCGA-ND-A4WC-01 5 140188074 140188074 G A PCDHA4 Silent p.S434S 0.38 TCGA-ND-A4WC-01 5 140215942 140215942 G A PCDHA7 Silent p.S658S 0.30 TCGA-ND-A4WC-01 5 140229206 140229206 G A PCDHA9 Missense_Mutation p.D376N 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-ND-A4WC-01 5 140229595 140229595 G A PCDHA9 Silent p.S505S 0.31 TCGA-ND-A4WC-01 5 140230511 140230511 T C PCDHA9 Intron 0.41 TCGA-ND-A4WC-01 5 140249078 140249078 G A PCDHA11 Silent p.P130P 0.37 TCGA-ND-A4WC-01 5 140262568 140262568 G A PCDHA13 Missense_Mutation p.A239T 0.32 deleterious_low_confidence(0.04) benign(0.364) TCGA-ND-A4WC-01 5 140308918 140308918 A C PCDHAC1 Intron 0.31 TCGA-ND-A4WC-01 5 140433447 140433447 A G PCDHB1 Missense_Mutation p.N798D 0.31 tolerated(0.44) benign(0) TCGA-ND-A4WC-01 5 140475653 140475653 G A PCDHB2 Missense_Mutation p.D427N 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-ND-A4WC-01 5 140476667 140476667 G T PCDHB2 Nonsense_Mutation p.E765* 0.23 TCGA-ND-A4WC-01 5 140480258 140480258 C A PCDHB3 Missense_Mutation p.L9I 0.35 tolerated_low_confidence(0.39) benign(0.059) TCGA-ND-A4WC-01 5 140515755 140515755 T C PCDHB5 Missense_Mutation p.Y247H 0.08 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-ND-A4WC-01 5 140572226 140572226 C T PCDHB10 Missense_Mutation p.S34L 0.34 deleterious_low_confidence(0.01) benign(0.332) TCGA-ND-A4WC-01 5 140603677 140603677 A C PCDHB14 Missense_Mutation p.L200F 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-ND-A4WC-01 5 140627280 140627280 C T PCDHB15 Missense_Mutation p.R712W 0.33 deleterious_low_confidence(0.01) benign(0.154) TCGA-ND-A4WC-01 5 140718783 140718783 G A PCDHGA2 Missense_Mutation p.G82D 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ND-A4WC-01 5 140720038 140720038 C T PCDHGA2 Silent p.P500P 0.29 TCGA-ND-A4WC-01 5 140730012 140730012 G A PCDHGB1 Missense_Mutation p.R62Q 0.41 deleterious(0.02) benign(0.272) TCGA-ND-A4WC-01 5 140750455 140750455 A C PCDHGB3 Missense_Mutation p.N165T 0.32 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 5 140752101 140752101 C T PCDHGB3 Missense_Mutation p.R714C 0.38 tolerated(0.11) benign(0.139) TCGA-ND-A4WC-01 5 140754335 140754335 C A PCDHGA6 Missense_Mutation p.L229M 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.738) TCGA-ND-A4WC-01 5 140773529 140773529 C A PCDHGA8 Silent p.V383V 0.37 TCGA-ND-A4WC-01 5 140784372 140784372 C T PCDHGA9 Missense_Mutation p.S618L 0.42 deleterious_low_confidence(0.04) benign(0.068) TCGA-ND-A4WC-01 5 140807759 140807759 T G PCDHGB6 Intron 0.42 TCGA-ND-A4WC-01 5 140811516 140811516 C A PCDHGA12 Missense_Mutation p.S397Y 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-ND-A4WC-01 5 140858062 140858062 T C PCDHGC3 Silent p.D793D 0.36 TCGA-ND-A4WC-01 5 140951545 140951545 C T DIAPH1 Silent p.E807E 0.35 TCGA-ND-A4WC-01 5 141035789 141035789 T C ARAP3 Missense_Mutation p.I1282V 0.39 tolerated(0.39) possibly_damaging(0.557) TCGA-ND-A4WC-01 5 141324842 141324842 C A PCDH12 3'UTR 0.34 TCGA-ND-A4WC-01 5 141325152 141325152 G T PCDH12 Missense_Mutation p.L1117M 0.42 deleterious(0.01) possibly_damaging(0.794) TCGA-ND-A4WC-01 5 141335924 141335924 C T PCDH12 Missense_Mutation p.R498H 0.34 tolerated(0.56) benign(0.007) TCGA-ND-A4WC-01 5 141524180 141524180 C T NDFIP1 Missense_Mutation p.R203W 0.34 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 5 1420693 1420693 G A SLC6A3 Silent p.C306C 0.35 TCGA-ND-A4WC-01 5 142150427 142150427 A C ARHGAP26 Missense_Mutation p.K34T 0.37 deleterious(0) possibly_damaging(0.728) TCGA-ND-A4WC-01 5 14508546 14508546 C A TRIO 3'UTR 0.36 TCGA-ND-A4WC-01 5 145393376 145393376 C A SH3RF2 Missense_Mutation p.L271M 0.27 tolerated(0.27) benign(0.025) TCGA-ND-A4WC-01 5 145969502 145969502 T G PPP2R2B 3'UTR 0.31 TCGA-ND-A4WC-01 5 14607452 14607452 T C FAM105A Missense_Mutation p.L171P 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 5 146077608 146077608 C A PPP2R2B Nonsense_Mutation p.E93* 0.32 TCGA-ND-A4WC-01 5 146619161 146619161 G A STK32A 5'UTR 0.35 TCGA-ND-A4WC-01 5 146722600 146722600 G A STK32A Missense_Mutation p.E156K 0.32 deleterious(0) probably_damaging(0.952) TCGA-ND-A4WC-01 5 14690293 14690293 A T FAM105B Missense_Mutation p.K247I 0.33 tolerated(0.18) possibly_damaging(0.622) TCGA-ND-A4WC-01 5 147030017 147030017 T C JAKMIP2 Missense_Mutation p.K241E 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-ND-A4WC-01 5 147443599 147443599 G A SPINK5 5'UTR 0.33 TCGA-ND-A4WC-01 5 147491427 147491427 G T SPINK5 Missense_Mutation p.G597C 0.38 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 147719321 147719321 A G SPINK9 3'UTR 0.50 TCGA-ND-A4WC-01 5 147830815 147830815 C T HTR4 Missense_Mutation p.G366E 0.37 tolerated_low_confidence(0.06) benign(0.226) TCGA-ND-A4WC-01 5 147863828 147863828 G T HTR4 Silent p.V397V 0.44 TCGA-ND-A4WC-01 5 147929810 147929810 G A HTR4 Silent p.F14F 0.28 TCGA-ND-A4WC-01 5 148719673 148719673 C G AFAP1L1 3'UTR 0.58 TCGA-ND-A4WC-01 5 148730559 148730559 C T GRPEL2 Missense_Mutation p.S131L 0.35 tolerated(0.11) benign(0.032) TCGA-ND-A4WC-01 5 149264383 149264383 C A PDE6A Missense_Mutation p.R629I 0.33 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 5 149360083 149360083 T G SLC26A2 Silent p.L309L 0.19 TCGA-ND-A4WC-01 5 149435833 149435833 G A CSF1R Silent p.F797F 0.30 TCGA-ND-A4WC-01 5 149826514 149826514 G A RPS14 Silent p.C54C 0.29 TCGA-ND-A4WC-01 5 150028210 150028210 T C SYNPO Missense_Mutation p.S369P 0.13 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 5 150099289 150099289 G A DCTN4 Missense_Mutation p.R325C 0.35 tolerated(0.12) possibly_damaging(0.864) TCGA-ND-A4WC-01 5 150278113 150278113 A G ZNF300 Silent p.L23L 0.14 TCGA-ND-A4WC-01 5 150311004 150311004 C A ZNF300P1 RNA 0.45 TCGA-ND-A4WC-01 5 150696383 150696383 G A SLC36A2 Missense_Mutation p.R483W 0.29 deleterious(0) benign(0.085) TCGA-ND-A4WC-01 5 150858923 150858923 T G SLC36A1 Missense_Mutation p.F344L 0.27 tolerated(0.18) benign(0.107) TCGA-ND-A4WC-01 5 151052738 151052738 C A SPARC Nonsense_Mutation p.E54* 0.12 TCGA-ND-A4WC-01 5 151202492 151202492 G T GLRA1 Missense_Mutation p.F372L 0.31 tolerated(0.2) benign(0.02) TCGA-ND-A4WC-01 5 154179268 154179268 C T LARP1 Missense_Mutation p.L422F 0.27 tolerated(0.06) benign(0.05) TCGA-ND-A4WC-01 5 154183841 154183841 G T LARP1 Missense_Mutation p.E763D 0.33 tolerated(0.43) probably_damaging(0.995) TCGA-ND-A4WC-01 5 154203091 154203091 G T FAXDC2 Missense_Mutation p.S143Y 0.31 deleterious(0.01) possibly_damaging(0.779) TCGA-ND-A4WC-01 5 154394020 154394020 G A KIF4B Missense_Mutation p.A201T 0.10 deleterious(0.01) possibly_damaging(0.799) TCGA-ND-A4WC-01 5 154396021 154396021 A - KIF4B Frame_Shift_Del p.K868Nfs*3 0.23 TCGA-ND-A4WC-01 5 156593022 156593022 T G FAM71B Missense_Mutation p.Q53P 0.08 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 156635937 156635937 G A ITK Missense_Mutation p.R59Q 0.27 deleterious(0.02) possibly_damaging(0.794) TCGA-ND-A4WC-01 5 156757772 156757772 C T CYFIP2 Nonsense_Mutation p.R701* 0.26 TCGA-ND-A4WC-01 5 156816422 156816422 G A CYFIP2 Missense_Mutation p.E1119K 0.43 tolerated(0.09) possibly_damaging(0.746) TCGA-ND-A4WC-01 5 157053528 157053528 A G SOX30 Silent p.T694T 0.28 TCGA-ND-A4WC-01 5 157178487 157178487 C T LSM11 Missense_Mutation p.R180W 0.29 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 5 157218887 157218887 C A CLINT1 Nonsense_Mutation p.E402* 0.35 TCGA-ND-A4WC-01 5 158603743 158603743 T G RNF145 Missense_Mutation p.K203T 0.41 tolerated(0.95) benign(0.017) TCGA-ND-A4WC-01 5 158630446 158630446 A G RNF145 Silent p.Y90Y 0.15 TCGA-ND-A4WC-01 5 1589452 1589452 G A SDHAP3 RNA 0.46 TCGA-ND-A4WC-01 5 159398918 159398918 G A ADRA1B Missense_Mutation p.A328T 0.24 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 5 159835009 159835009 G A SLU7 Missense_Mutation p.P296S 0.35 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 5 160721219 160721219 G A GABRB2 Missense_Mutation p.R470C 0.35 deleterious(0) possibly_damaging(0.567) TCGA-ND-A4WC-01 5 160753387 160753387 G T GABRB2 Missense_Mutation p.F393L 0.18 tolerated(0.72) benign(0.001) TCGA-ND-A4WC-01 5 160761811 160761811 G A GABRB2 Silent p.S260S 0.30 TCGA-ND-A4WC-01 5 161495013 161495013 C T GABRG2 Missense_Mutation p.S3L 0.29 deleterious_low_confidence(0.02) benign(0.005) TCGA-ND-A4WC-01 5 162883965 162883965 T C NUDCD2 Silent p.R120R 0.20 TCGA-ND-A4WC-01 5 162900240 162900240 G T HMMR Nonsense_Mutation p.E236* 0.29 TCGA-ND-A4WC-01 5 162902573 162902573 A C HMMR Missense_Mutation p.K388T 0.24 tolerated(0.09) benign(0.002) TCGA-ND-A4WC-01 5 162945299 162945299 G A MAT2B Missense_Mutation p.R312Q 0.35 tolerated(0.21) benign(0.056) TCGA-ND-A4WC-01 5 16701878 16701878 G A MYO10 Missense_Mutation p.R876C 0.31 tolerated(0.05) benign(0.328) TCGA-ND-A4WC-01 5 167630748 167630748 G T TENM2 Missense_Mutation p.R1162M 0.35 deleterious(0) probably_damaging(0.984) TCGA-ND-A4WC-01 5 167689283 167689283 C A TENM2 Missense_Mutation p.S2598Y 0.38 deleterious(0) benign(0.308) TCGA-ND-A4WC-01 5 167689785 167689785 T G TENM2 Missense_Mutation p.F2765L 0.42 tolerated(0.12) possibly_damaging(0.849) TCGA-ND-A4WC-01 5 168180967 168180967 G A SLIT3 Silent p.F577F 0.30 TCGA-ND-A4WC-01 5 169805521 169805521 C A KCNMB1 3'UTR 0.38 TCGA-ND-A4WC-01 5 171326969 171326969 C T FBXW11 Missense_Mutation p.R170Q 0.40 deleterious(0.02) benign(0.333) TCGA-ND-A4WC-01 5 171766016 171766016 C T SH3PXD2B Missense_Mutation p.R698Q 0.31 tolerated(0.19) benign(0.005) TCGA-ND-A4WC-01 5 175815966 175815966 T C HIGD2A Missense_Mutation p.V49A 0.29 deleterious(0) probably_damaging(0.958) TCGA-ND-A4WC-01 5 175921084 175921084 C T FAF2 Missense_Mutation p.R190C 0.32 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 5 176002378 176002378 A G CDHR2 Missense_Mutation p.Q240R 0.36 tolerated(0.61) benign(0.026) TCGA-ND-A4WC-01 5 176304275 176304275 C T UNC5A Silent p.D487D 0.44 TCGA-ND-A4WC-01 5 176639179 176639179 C T NSD1 Missense_Mutation p.A1260V 0.26 tolerated_low_confidence(0.34) benign(0.002) TCGA-ND-A4WC-01 5 176665324 176665324 T G NSD1 Missense_Mutation p.I1336M 0.19 tolerated_low_confidence(0.17) benign(0.011) TCGA-ND-A4WC-01 5 176675273 176675273 A C NSD1 Missense_Mutation p.K1530T 0.35 deleterious(0.01) benign(0.171) TCGA-ND-A4WC-01 5 176798548 176798548 C T RGS14 Missense_Mutation p.P486S 0.36 tolerated(0.42) benign(0.002) TCGA-ND-A4WC-01 5 176951478 176951478 G A FAM193B Silent p.V668V 0.31 TCGA-ND-A4WC-01 5 177634126 177634126 A C HNRNPAB Missense_Mutation p.K190T 0.36 deleterious(0.03) probably_damaging(0.982) TCGA-ND-A4WC-01 5 178309997 178309997 G T ZNF354B Nonsense_Mutation p.E182* 0.29 TCGA-ND-A4WC-01 5 178310254 178310254 G T ZNF354B Missense_Mutation p.E267D 0.38 deleterious(0) probably_damaging(0.975) TCGA-ND-A4WC-01 5 178310741 178310741 A G ZNF354B Missense_Mutation p.I430V 0.27 tolerated(0.24) benign(0.314) TCGA-ND-A4WC-01 5 178310994 178310994 G T ZNF354B Missense_Mutation p.R514I 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 5 178416330 178416330 C A GRM6 Missense_Mutation p.E363D 0.34 tolerated(0.7) benign(0.006) TCGA-ND-A4WC-01 5 178559847 178559847 C T ADAMTS2 Missense_Mutation p.V714M 0.45 deleterious(0.01) possibly_damaging(0.888) TCGA-ND-A4WC-01 5 179394008 179394008 C T RNF130 Silent p.P316P 0.34 TCGA-ND-A4WC-01 5 179676006 179676006 C T MAPK9 Missense_Mutation p.E195K 0.07 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 5 180651723 180651723 G A TRIM41 Missense_Mutation p.E242K 0.31 tolerated(0.12) possibly_damaging(0.671) TCGA-ND-A4WC-01 5 23522975 23522975 A G PRDM9 Missense_Mutation p.N288S 0.35 deleterious(0.02) benign(0.001) TCGA-ND-A4WC-01 5 24487683 24487683 G A CDH10 3'UTR 0.38 TCGA-ND-A4WC-01 5 24509887 24509887 G A CDH10 Silent p.V348V 0.39 TCGA-ND-A4WC-01 5 24535873 24535873 G A CDH10 Silent p.S195S 0.40 TCGA-ND-A4WC-01 5 24593636 24593636 G T CDH10 5'UTR 0.27 TCGA-ND-A4WC-01 5 251454 251454 A G SDHA Silent p.G555G 0.31 TCGA-ND-A4WC-01 5 32088777 32088777 C T PDZD2 Silent p.D1741D 0.37 TCGA-ND-A4WC-01 5 32403220 32403220 T A ZFR Missense_Mutation p.N503Y 0.42 deleterious(0.02) unknown(0) TCGA-ND-A4WC-01 5 32404114 32404114 G T ZFR Missense_Mutation p.S374Y 0.26 deleterious(0.01) unknown(0) TCGA-ND-A4WC-01 5 32601272 32601272 T C SUB1 3'UTR 0.36 TCGA-ND-A4WC-01 5 32786419 32786419 G A NPR3 Missense_Mutation p.D532N 0.32 deleterious(0.03) probably_damaging(0.977) TCGA-ND-A4WC-01 5 33467054 33467054 C T TARS Nonsense_Mutation p.R696* 0.31 TCGA-ND-A4WC-01 5 33937052 33937052 C T RXFP3 Silent p.G69G 0.34 TCGA-ND-A4WC-01 5 34005876 34005876 A T AMACR Missense_Mutation p.Y126N 0.38 deleterious(0) probably_damaging(0.982) TCGA-ND-A4WC-01 5 353941 353941 C T AHRR Silent p.F57F 0.24 TCGA-ND-A4WC-01 5 354006 354006 G A AHRR Missense_Mutation p.R79Q 0.30 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 5 35763639 35763639 T C SPEF2 Silent p.P1212P 0.30 TCGA-ND-A4WC-01 5 35860991 35860991 C T IL7R Silent p.F40F 0.17 TCGA-ND-A4WC-01 5 35875781 35875781 C A IL7R Intron 0.50 TCGA-ND-A4WC-01 5 35910012 35910012 T G CAPSL Missense_Mutation p.K161Q 0.14 tolerated(0.38) benign(0.042) TCGA-ND-A4WC-01 5 36955610 36955610 C A NIPBL Missense_Mutation p.A34D 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-ND-A4WC-01 5 37022443 37022443 G A NIPBL Missense_Mutation p.R1842Q 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-ND-A4WC-01 5 37198935 37198935 T G C5orf42 Missense_Mutation p.K1181Q 0.10 deleterious(0) probably_damaging(0.958) TCGA-ND-A4WC-01 5 37291976 37291976 A C NUP155 3'UTR 0.28 TCGA-ND-A4WC-01 5 39341372 39341372 G A C9 Missense_Mutation p.R118W 0.34 deleterious(0) possibly_damaging(0.601) TCGA-ND-A4WC-01 5 39392476 39392476 C A DAB2 Missense_Mutation p.E107D 0.36 deleterious(0.01) benign(0.128) TCGA-ND-A4WC-01 5 40716222 40716222 T G TTC33 3'UTR 0.40 TCGA-ND-A4WC-01 5 40730378 40730378 C T TTC33 Missense_Mutation p.E97K 0.37 deleterious(0.01) possibly_damaging(0.804) TCGA-ND-A4WC-01 5 40959686 40959686 G A C7 Missense_Mutation p.S542N 0.41 tolerated(0.17) benign(0.021) TCGA-ND-A4WC-01 5 41313764 41313764 G T PLCXD3 Silent p.V307V 0.30 TCGA-ND-A4WC-01 5 41382489 41382489 A C PLCXD3 Missense_Mutation p.F84C 0.39 tolerated(0.07) probably_damaging(0.996) TCGA-ND-A4WC-01 5 41934505 41934505 G T FBXO4 Intron 0.75 TCGA-ND-A4WC-01 5 50090965 50090965 C T PARP8 Missense_Mutation p.S381L 0.28 tolerated_low_confidence(0.66) benign(0.033) TCGA-ND-A4WC-01 5 5146327 5146327 G T ADAMTS16 Missense_Mutation p.R87I 0.25 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 52096521 52096521 C T PELO Missense_Mutation p.A98V 0.39 deleterious(0) probably_damaging(0.943) TCGA-ND-A4WC-01 5 52211328 52211328 A C ITGA1 Missense_Mutation p.K631T 0.38 deleterious(0) benign(0.356) TCGA-ND-A4WC-01 5 52347299 52347299 A C ITGA2 Missense_Mutation p.K230T 0.35 tolerated(0.33) benign(0.003) TCGA-ND-A4WC-01 5 5262810 5262810 G T ADAMTS16 Missense_Mutation p.K901N 0.31 tolerated(0.74) benign(0.004) TCGA-ND-A4WC-01 5 52780019 52780019 T C FST Missense_Mutation p.L206P 0.34 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 53751869 53751869 G T HSPB3 Missense_Mutation p.D84Y 0.28 deleterious(0) probably_damaging(0.986) TCGA-ND-A4WC-01 5 54329702 54329702 A C GZMK Missense_Mutation p.K248T 0.19 deleterious(0.03) benign(0.437) TCGA-ND-A4WC-01 5 54640967 54640967 C T SKIV2L2 Nonsense_Mutation p.R351* 0.29 TCGA-ND-A4WC-01 5 54931420 54931420 A C SLC38A9 Silent p.V411V 0.40 TCGA-ND-A4WC-01 5 54948368 54948368 A C SLC38A9 Missense_Mutation p.F314C 0.30 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 55076927 55076927 G A DDX4 Missense_Mutation p.R177H 0.27 tolerated_low_confidence(0.13) possibly_damaging(0.617) TCGA-ND-A4WC-01 5 55081645 55081645 A C DDX4 Missense_Mutation p.K270N 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-ND-A4WC-01 5 55109548 55109548 T G DDX4 Missense_Mutation p.F555V 0.39 tolerated(0.05) probably_damaging(0.914) TCGA-ND-A4WC-01 5 55195809 55195809 C T IL31RA Silent p.S306S 0.40 TCGA-ND-A4WC-01 5 56545382 56545382 A G GPBP1 Silent p.E324E 0.43 TCGA-ND-A4WC-01 5 60053346 60053346 G T ELOVL7 Nonsense_Mutation p.S209* 0.29 TCGA-ND-A4WC-01 5 64814413 64814413 T G CENPK Missense_Mutation p.K233N 0.31 tolerated(0.11) benign(0.056) TCGA-ND-A4WC-01 5 64907456 64907456 C A TRIM23 Nonsense_Mutation p.E207* 0.33 TCGA-ND-A4WC-01 5 65016598 65016598 G A SGTB Missense_Mutation p.R13C 0.32 deleterious(0) possibly_damaging(0.582) TCGA-ND-A4WC-01 5 6607343 6607343 T G NSUN2 Missense_Mutation p.N493T 0.34 tolerated(0.43) benign(0.002) TCGA-ND-A4WC-01 5 66448468 66448468 T C MAST4 Missense_Mutation p.M1100T 0.39 benign(0.064) TCGA-ND-A4WC-01 5 66479942 66479942 C T CD180 Silent p.Q243Q 0.34 TCGA-ND-A4WC-01 5 68805396 68805396 T C OCLN Missense_Mutation p.V160A 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 71015769 71015769 G T CARTPT Missense_Mutation p.K74N 0.33 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 5 71489773 71489773 G T MAP1B Missense_Mutation p.K197N 0.39 unknown(0) TCGA-ND-A4WC-01 5 71493698 71493698 G T MAP1B Missense_Mutation p.D1506Y 0.35 probably_damaging(0.999) TCGA-ND-A4WC-01 5 71494405 71494405 C T MAP1B Silent p.I1741I 0.39 TCGA-ND-A4WC-01 5 71756207 71756207 C T ZNF366 Missense_Mutation p.D373N 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-ND-A4WC-01 5 73181709 73181709 G A ARHGEF28 Silent p.A1030A 0.25 TCGA-ND-A4WC-01 5 74325297 74325297 G T GCNT4 Missense_Mutation p.A189D 0.38 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 5 74655286 74655286 A C HMGCR Missense_Mutation p.N788H 0.23 tolerated(0.08) benign(0.014) TCGA-ND-A4WC-01 5 74698848 74698848 G T COL4A3BP Missense_Mutation p.F450L 0.29 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 5 74892722 74892722 C A POLK Missense_Mutation p.S735Y 0.34 tolerated(0.24) benign(0.27) TCGA-ND-A4WC-01 5 75896636 75896636 G T IQGAP2 Splice_Site p.X358_splice 0.20 TCGA-ND-A4WC-01 5 75964567 75964567 T C IQGAP2 Missense_Mutation p.F914S 0.17 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 5 76645304 76645304 G T PDE8B Nonsense_Mutation p.E313* 0.32 TCGA-ND-A4WC-01 5 76729109 76729109 A G WDR41 Missense_Mutation p.F411L 0.15 deleterious(0.02) possibly_damaging(0.812) TCGA-ND-A4WC-01 5 7784477 7784477 G T ADCY2 Splice_Site p.X795_splice 0.28 TCGA-ND-A4WC-01 5 78076220 78076220 C A ARSB Nonstop_Mutation p.*534Yext*50 0.09 TCGA-ND-A4WC-01 5 7817025 7817025 C A ADCY2 Missense_Mutation p.A977D 0.27 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 5 78350097 78350097 T C DMGDH Silent p.Q150Q 0.25 TCGA-ND-A4WC-01 5 78417160 78417160 C T BHMT Silent p.G199G 0.14 TCGA-ND-A4WC-01 5 7870968 7870968 G A MTRR Missense_Mutation p.E48K 0.09 deleterious(0.03) probably_damaging(1) TCGA-ND-A4WC-01 5 78734966 78734966 C T HOMER1 Missense_Mutation p.A132T 0.22 tolerated(0.11) benign(0.004) TCGA-ND-A4WC-01 5 7873611 7873611 C A MTRR Missense_Mutation p.F112L 0.35 tolerated(0.38) benign(0.015) TCGA-ND-A4WC-01 5 79028508 79028508 C A CMYA5 Missense_Mutation p.S1307Y 0.36 probably_damaging(0.979) TCGA-ND-A4WC-01 5 79028699 79028699 G T CMYA5 Nonsense_Mutation p.E1371* 0.48 TCGA-ND-A4WC-01 5 79084791 79084791 T C CMYA5 Intron 0.43 TCGA-ND-A4WC-01 5 79084796 79084796 C A CMYA5 Missense_Mutation p.S3853Y 0.37 probably_damaging(0.999) TCGA-ND-A4WC-01 5 79617087 79617087 G T SPZ1 Missense_Mutation p.E351D 0.40 tolerated(0.11) possibly_damaging(0.724) TCGA-ND-A4WC-01 5 79734320 79734320 G T ZFYVE16 Nonsense_Mutation p.E606* 0.34 TCGA-ND-A4WC-01 5 80600780 80600780 A C ZCCHC9 Missense_Mutation p.L68F 0.37 tolerated(0.15) benign(0.418) TCGA-ND-A4WC-01 5 82816211 82816211 A G VCAN Missense_Mutation p.T696A 0.33 deleterious(0.01) benign(0.256) TCGA-ND-A4WC-01 5 82833745 82833745 C T VCAN Silent p.G1641G 0.31 TCGA-ND-A4WC-01 5 82837802 82837802 C A VCAN Missense_Mutation p.L2994I 0.40 deleterious(0.02) benign(0.002) TCGA-ND-A4WC-01 5 82937242 82937242 T C HAPLN1 3'UTR 0.26 TCGA-ND-A4WC-01 5 86708455 86708455 T G CCNH Intron 0.32 TCGA-ND-A4WC-01 5 88018554 88018554 G A MEF2C Missense_Mutation p.S440L 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 5 89814938 89814938 C A LYSMD3 Missense_Mutation p.D207Y 0.10 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 5 89938771 89938771 C A GPR98 Missense_Mutation p.F822L 0.37 possibly_damaging(0.483) TCGA-ND-A4WC-01 5 89948330 89948330 A C GPR98 Missense_Mutation p.K1195T 0.46 benign(0) TCGA-ND-A4WC-01 5 90077323 90077323 C T GPR98 Missense_Mutation p.R4387C 0.42 probably_damaging(0.965) TCGA-ND-A4WC-01 5 90151704 90151704 T G GPR98 Missense_Mutation p.F5914C 0.28 probably_damaging(0.963) TCGA-ND-A4WC-01 5 9154778 9154778 G A SEMA5A Missense_Mutation p.P435S 0.38 tolerated(0.68) possibly_damaging(0.7) TCGA-ND-A4WC-01 5 95018287 95018287 A G SPATA9 Missense_Mutation p.V32A 0.32 tolerated(0.2) benign(0.036) TCGA-ND-A4WC-01 5 95242363 95242363 G T ELL2 Missense_Mutation p.S202Y 0.14 deleterious(0) benign(0.06) TCGA-ND-A4WC-01 5 95751803 95751803 C A PCSK1 Nonsense_Mutation p.E215* 0.38 TCGA-ND-A4WC-01 5 96071887 96071887 G T CAST Missense_Mutation p.K173N 0.28 tolerated(0.36) benign(0.002) TCGA-ND-A4WC-01 5 96106290 96106290 C T CAST Missense_Mutation p.A734V 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 5 96219620 96219620 T C ERAP2 Missense_Mutation p.S234P 0.41 deleterious(0) benign(0.269) TCGA-ND-A4WC-01 5 96235878 96235878 G T ERAP2 Missense_Mutation p.K519N 0.30 deleterious(0.03) benign(0.157) TCGA-ND-A4WC-01 5 98236676 98236676 C T CHD1 Missense_Mutation p.R233H 0.34 deleterious(0.01) probably_damaging(0.943) TCGA-ND-A4WC-01 5 99871609 99871609 G A FAM174A Silent p.L125L 0.31 TCGA-ND-A4WC-01 6 100057121 100057121 C A PRDM13 Missense_Mutation p.S112Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 6 100403957 100403957 C A MCHR2 Nonsense_Mutation p.E23* 0.31 TCGA-ND-A4WC-01 6 100838345 100838345 G T SIM1 Silent p.S731S 0.23 TCGA-ND-A4WC-01 6 101248328 101248328 T G ASCC3 Missense_Mutation p.Q325H 0.50 deleterious(0.02) probably_damaging(0.957) TCGA-ND-A4WC-01 6 10415133 10415133 G A TFAP2A Intron 0.65 TCGA-ND-A4WC-01 6 10556716 10556716 C T GCNT2 Intron 0.16 TCGA-ND-A4WC-01 6 10556860 10556860 G T GCNT2 Intron 0.80 TCGA-ND-A4WC-01 6 105825262 105825262 G A PREP Missense_Mutation p.R85W 0.30 deleterious(0.02) possibly_damaging(0.572) TCGA-ND-A4WC-01 6 106968877 106968877 C A AIM1 Missense_Mutation p.T857N 0.34 tolerated(0.13) possibly_damaging(0.548) TCGA-ND-A4WC-01 6 107019892 107019892 C A RTN4IP1 Missense_Mutation p.K390N 0.30 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 6 10819165 10819165 C A MAK Missense_Mutation p.R37I 0.58 deleterious(0) probably_damaging(0.979) TCGA-ND-A4WC-01 6 108204347 108204347 C T SEC63 Missense_Mutation p.A560T 0.25 tolerated(0.65) benign(0.002) TCGA-ND-A4WC-01 6 109752502 109752502 A C PPIL6 Missense_Mutation p.F93C 0.36 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 6 109766179 109766179 C A MICAL1 Missense_Mutation p.K967N 0.22 tolerated(0.13) benign(0.17) TCGA-ND-A4WC-01 6 109788914 109788914 T C ZBTB24 Missense_Mutation p.I438V 0.16 tolerated(0.17) benign(0.05) TCGA-ND-A4WC-01 6 109802552 109802552 A G ZBTB24 Silent p.S226S 0.36 TCGA-ND-A4WC-01 6 109802872 109802872 C A ZBTB24 Missense_Mutation p.D120Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 6 109816601 109816601 A G AK9 Silent p.L1786L 0.34 TCGA-ND-A4WC-01 6 110062741 110062741 C A FIG4 Missense_Mutation p.N290K 0.41 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WC-01 6 110423417 110423417 G T WASF1 Missense_Mutation p.S299Y 0.35 tolerated(0.37) unknown(0) TCGA-ND-A4WC-01 6 110988687 110988687 G A CDK19 Missense_Mutation p.L136F 0.38 deleterious(0.04) probably_damaging(0.968) TCGA-ND-A4WC-01 6 111540115 111540115 C T SLC16A10 Silent p.F395F 0.33 TCGA-ND-A4WC-01 6 111680169 111680169 G A REV3L Nonsense_Mutation p.R2310* 0.32 TCGA-ND-A4WC-01 6 111693940 111693940 C T REV3L Missense_Mutation p.R1873Q 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 6 111983095 111983095 G A FYN Silent p.C487C 0.33 TCGA-ND-A4WC-01 6 11201094 11201094 G A NEDD9 Intron 0.27 TCGA-ND-A4WC-01 6 112020831 112020831 G A FYN Intron 0.28 TCGA-ND-A4WC-01 6 112476055 112476055 G T LAMA4 Missense_Mutation p.S685Y 0.29 tolerated(0.12) benign(0.002) TCGA-ND-A4WC-01 6 112671559 112671559 G T RFPL4B Nonsense_Mutation p.E217* 0.43 TCGA-ND-A4WC-01 6 116758182 116758182 G T DSE Missense_Mutation p.D851Y 0.31 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-ND-A4WC-01 6 116949485 116949485 G T RSPH4A Nonsense_Mutation p.E539* 0.29 TCGA-ND-A4WC-01 6 117609891 117609891 C A ROS1 Nonsense_Mutation p.E2270* 0.40 TCGA-ND-A4WC-01 6 117715350 117715350 C A ROS1 Missense_Mutation p.R380I 0.29 deleterious(0) probably_damaging(0.914) TCGA-ND-A4WC-01 6 118228913 118228913 G A SLC35F1 Silent p.Q8Q 0.52 TCGA-ND-A4WC-01 6 118556698 118556698 C T SLC35F1 Nonsense_Mutation p.R126* 0.21 TCGA-ND-A4WC-01 6 118880411 118880411 A G PLN 3'UTR 0.36 TCGA-ND-A4WC-01 6 119226904 119226904 G T ASF1A Nonsense_Mutation p.E105* 0.38 TCGA-ND-A4WC-01 6 119301348 119301348 G A FAM184A Silent p.V752V 0.27 TCGA-ND-A4WC-01 6 121577399 121577399 G A TBC1D32 Missense_Mutation p.S589L 0.43 deleterious(0.03) benign(0.008) TCGA-ND-A4WC-01 6 121768608 121768608 G T GJA1 Missense_Mutation p.E205D 0.34 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 6 122774932 122774932 G A SERINC1 Missense_Mutation p.S191L 0.14 deleterious(0.01) possibly_damaging(0.605) TCGA-ND-A4WC-01 6 123130644 123130644 T C SMPDL3A 3'UTR 0.38 TCGA-ND-A4WC-01 6 125231469 125231469 G T RP11-510H23.1 RNA 0.36 TCGA-ND-A4WC-01 6 126242114 126242114 G A NCOA7 Missense_Mutation p.R757H 0.35 deleterious(0.01) possibly_damaging(0.777) TCGA-ND-A4WC-01 6 126314910 126314910 A G TRMT11 Missense_Mutation p.K27R 0.45 tolerated(0.18) benign(0.009) TCGA-ND-A4WC-01 6 127440315 127440315 A C RSPO3 5'UTR 0.27 TCGA-ND-A4WC-01 6 127608732 127608732 G A RNF146 Missense_Mutation p.R325Q 0.29 tolerated(0.28) benign(0.238) TCGA-ND-A4WC-01 6 128134152 128134152 C A THEMIS Missense_Mutation p.R545I 0.40 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.73 unknown(0) TCGA-ND-A4WC-01 6 129637245 129637245 C A LAMA2 Missense_Mutation p.F1329L 0.31 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 6 130413911 130413911 A G L3MBTL3 Missense_Mutation p.N514D 0.26 tolerated(0.27) benign(0.014) TCGA-ND-A4WC-01 6 131201347 131201347 C A EPB41L2 Splice_Site p.X612_splice 0.44 TCGA-ND-A4WC-01 6 131904520 131904520 T G ARG1 Missense_Mutation p.F239V 0.34 deleterious(0) possibly_damaging(0.701) TCGA-ND-A4WC-01 6 132006568 132006568 C A ENPP3 Missense_Mutation p.F395L 0.33 tolerated(0.1) benign(0.001) TCGA-ND-A4WC-01 6 132030936 132030936 A C CTAGE9 Missense_Mutation p.Y408D 0.29 tolerated(0.31) benign(0.013) TCGA-ND-A4WC-01 6 132860038 132860038 C A TAAR9 Missense_Mutation p.L204I 0.43 tolerated(0.21) probably_damaging(0.998) TCGA-ND-A4WC-01 6 13327102 13327102 C T TBC1D7 Missense_Mutation p.R10H 0.79 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 6 134213049 134213049 C T TCF21 3'UTR 0.27 TCGA-ND-A4WC-01 6 134638579 134638579 T C SGK1 Missense_Mutation p.N7S 0.29 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-ND-A4WC-01 6 135271107 135271107 C T ALDH8A1 Missense_Mutation p.D29N 0.32 tolerated(1) benign(0.044) TCGA-ND-A4WC-01 6 136597112 136597112 C A BCLAF1 Missense_Mutation p.K517N 0.08 deleterious(0) possibly_damaging(0.607) TCGA-ND-A4WC-01 6 136597398 136597398 C T BCLAF1 Missense_Mutation p.S422N 0.16 tolerated(0.99) benign(0) TCGA-ND-A4WC-01 6 136599082 136599082 C A BCLAF1 Missense_Mutation p.D313Y 0.12 deleterious_low_confidence(0) benign(0.092) TCGA-ND-A4WC-01 6 136667149 136667149 A C MAP7 Missense_Mutation p.I717S 0.37 tolerated(0.06) unknown(0) TCGA-ND-A4WC-01 6 136742892 136742892 C T MAP7 Missense_Mutation p.R60H 0.32 tolerated_low_confidence(0.07) benign(0.104) TCGA-ND-A4WC-01 6 138559762 138559762 G T KIAA1244 Missense_Mutation p.E179D 0.36 tolerated(0.14) benign(0.168) TCGA-ND-A4WC-01 6 139159530 139159530 A G ECT2L Missense_Mutation p.K74R 0.44 tolerated(0.7) benign(0.008) TCGA-ND-A4WC-01 6 139563669 139563669 G A TXLNB Silent p.V683V 0.15 TCGA-ND-A4WC-01 6 139581502 139581502 C A TXLNB Nonsense_Mutation p.E319* 0.32 TCGA-ND-A4WC-01 6 143081489 143081489 C T HIVEP2 Missense_Mutation p.R1979Q 0.31 tolerated(1) benign(0) TCGA-ND-A4WC-01 6 145172282 145172282 A G UTRN 3'UTR 0.41 TCGA-ND-A4WC-01 6 146708098 146708098 G T GRM1 Nonsense_Mutation p.E559* 0.35 TCGA-ND-A4WC-01 6 146755216 146755216 G A GRM1 Missense_Mutation p.V957I 0.10 tolerated(0.2) benign(0.241) TCGA-ND-A4WC-01 6 147124488 147124488 C T ADGB Intron 0.41 TCGA-ND-A4WC-01 6 147635409 147635409 A G STXBP5 Missense_Mutation p.I435V 0.32 tolerated(0.32) benign(0.007) TCGA-ND-A4WC-01 6 149982885 149982885 G A LATS1 Missense_Mutation p.R1125C 0.36 tolerated_low_confidence(0.17) benign(0.329) TCGA-ND-A4WC-01 6 150001229 150001229 C A LATS1 Missense_Mutation p.S792I 0.13 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 6 150001373 150001373 C T LATS1 Missense_Mutation p.R744Q 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 6 151153217 151153217 G A PLEKHG1 Silent p.A990A 0.44 TCGA-ND-A4WC-01 6 151671102 151671102 A C AKAP12 Missense_Mutation p.K526Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 6 151671492 151671492 G T AKAP12 Nonsense_Mutation p.E656* 0.28 TCGA-ND-A4WC-01 6 151789606 151789606 T G C6orf211 Silent p.L229L 0.36 TCGA-ND-A4WC-01 6 152476036 152476036 C A SYNE1 Missense_Mutation p.K8040N 0.39 probably_damaging(0.987) TCGA-ND-A4WC-01 6 152673366 152673366 A G SYNE1 Silent p.D3792D 0.32 TCGA-ND-A4WC-01 6 152674558 152674558 T G SYNE1 Missense_Mutation p.K3698T 0.25 possibly_damaging(0.628) TCGA-ND-A4WC-01 6 152774635 152774635 A G SYNE1 Intron 0.40 TCGA-ND-A4WC-01 6 153019160 153019160 T G MYCT1 Missense_Mutation p.F41L 0.29 tolerated_low_confidence(0.43) benign(0.001) TCGA-ND-A4WC-01 6 153076473 153076473 A C VIP Missense_Mutation p.K100N 0.33 deleterious(0) possibly_damaging(0.82) TCGA-ND-A4WC-01 6 154481002 154481002 C A IPCEF1 Missense_Mutation p.K426N 0.13 tolerated_low_confidence(0.12) benign(0.28) TCGA-ND-A4WC-01 6 155458506 155458506 C T TIAM2 Nonsense_Mutation p.R464* 0.13 TCGA-ND-A4WC-01 6 155569225 155569225 G A TIAM2 Silent p.P1248P 0.25 TCGA-ND-A4WC-01 6 155578064 155578064 G T TIAM2 Missense_Mutation p.A1639S 0.08 tolerated_low_confidence(0.12) benign(0.016) TCGA-ND-A4WC-01 6 155597436 155597436 G A CLDN20 Missense_Mutation p.D195N 0.31 tolerated(0.36) benign(0.009) TCGA-ND-A4WC-01 6 155743877 155743877 G T NOX3 Missense_Mutation p.S420Y 0.38 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 6 157528886 157528886 C T ARID1B Missense_Mutation p.A2204V 0.34 probably_damaging(0.994) TCGA-ND-A4WC-01 6 159687252 159687252 A C FNDC1 Missense_Mutation p.K1807N 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 6 160176595 160176595 T G WTAP Silent p.V381V 0.15 TCGA-ND-A4WC-01 6 160201557 160201557 T C TCP1 Missense_Mutation p.T339A 0.36 tolerated(0.18) benign(0.038) TCGA-ND-A4WC-01 6 160240086 160240086 C T PNLDC1 Missense_Mutation p.L445F 0.38 tolerated(0.28) benign(0.014) TCGA-ND-A4WC-01 6 160514770 160514770 G A IGF2R Intron 0.20 TCGA-ND-A4WC-01 6 160679836 160679836 G A SLC22A2 5'UTR 0.32 TCGA-ND-A4WC-01 6 160831867 160831867 A C SLC22A3 Missense_Mutation p.N322H 0.40 tolerated(0.64) benign(0.004) TCGA-ND-A4WC-01 6 160875422 160875422 G T SLC22A3 3'Flank 0.48 TCGA-ND-A4WC-01 6 161027561 161027561 G A LPA Silent p.V911V 0.35 TCGA-ND-A4WC-01 6 161470911 161470911 A C MAP3K4 Missense_Mutation p.Q536P 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-ND-A4WC-01 6 161530819 161530819 T C MAP3K4 Silent p.D1423D 0.22 TCGA-ND-A4WC-01 6 166733697 166733697 T G SFT2D1 3'UTR 0.41 TCGA-ND-A4WC-01 6 166902356 166902356 C T RPS6KA2 Missense_Mutation p.R299Q 0.31 tolerated(0.16) benign(0.175) TCGA-ND-A4WC-01 6 167550902 167550902 A C CCR6 3'UTR 0.35 TCGA-ND-A4WC-01 6 168468077 168468077 G T FRMD1 Missense_Mutation p.F118L 0.24 deleterious(0.04) benign(0.14) TCGA-ND-A4WC-01 6 169629697 169629697 G A THBS2 Silent p.D743D 0.34 TCGA-ND-A4WC-01 6 170627407 170627407 A G FAM120B Missense_Mutation p.K310R 0.34 tolerated(0.1) benign(0.028) TCGA-ND-A4WC-01 6 17629400 17629400 C T NUP153 Silent p.K1010K 0.19 TCGA-ND-A4WC-01 6 25850809 25850809 G T SLC17A3 Missense_Mutation p.L291I 0.74 tolerated(1) benign(0.1) TCGA-ND-A4WC-01 6 26189200 26189200 G A HIST1H4D Silent p.I35I 0.72 TCGA-ND-A4WC-01 6 26373245 26373245 C T BTN3A2 Missense_Mutation p.A279V 0.32 tolerated(0.31) benign(0.014) TCGA-ND-A4WC-01 6 26413752 26413752 G T BTN3A1 Missense_Mutation p.K458N 0.63 tolerated(0.07) benign(0.049) TCGA-ND-A4WC-01 6 26428198 26428198 A C BTN2A3P RNA 0.15 TCGA-ND-A4WC-01 6 27369039 27369039 G T ZNF391 Missense_Mutation p.R297I 0.39 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 6 27861429 27861429 G T HIST1H2BO Missense_Mutation p.M63I 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.631) TCGA-ND-A4WC-01 6 28120090 28120090 C T ZKSCAN8 Missense_Mutation p.L235F 0.33 tolerated(0.7) benign(0.021) TCGA-ND-A4WC-01 6 28217588 28217588 C A ZKSCAN4 Nonsense_Mutation p.E150* 0.74 TCGA-ND-A4WC-01 6 28472164 28472164 C T GPX6 Missense_Mutation p.D191N 0.25 tolerated(0.12) benign(0.007) TCGA-ND-A4WC-01 6 28483538 28483538 G A GPX6 5'UTR 0.63 TCGA-ND-A4WC-01 6 28543364 28543364 G T SCAND3 Nonsense_Mutation p.S373* 0.67 TCGA-ND-A4WC-01 6 29012757 29012757 A C OR2W1 Missense_Mutation p.L66V 0.13 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 6 29275214 29275214 C A OR14J1 Missense_Mutation p.L250I 0.35 tolerated(0.37) benign(0.361) TCGA-ND-A4WC-01 6 29577119 29577119 C A GABBR1 Missense_Mutation p.K582N 0.78 tolerated(0.3) benign(0.021) TCGA-ND-A4WC-01 6 29627126 29627126 C A MOG Missense_Mutation p.P40H 0.08 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 6 30080518 30080518 A C TRIM31 Missense_Mutation p.I22S 0.73 deleterious(0) probably_damaging(0.937) TCGA-ND-A4WC-01 6 30859254 30859254 C T DDR1 Silent p.G221G 0.78 TCGA-ND-A4WC-01 6 30881673 30881673 G T GTF2H4 Missense_Mutation p.E434D 0.77 tolerated(0.2) benign(0.008) TCGA-ND-A4WC-01 6 30891151 30891151 G A VARS2 Missense_Mutation p.D809N 0.72 deleterious(0.05) probably_damaging(0.996) TCGA-ND-A4WC-01 6 31636911 31636911 C A CSNK2B-LY6G5B-1181 Missense_Mutation p.P110H 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-ND-A4WC-01 6 31678182 31678182 T C LY6G6F Silent p.L286L 0.75 TCGA-ND-A4WC-01 6 33235673 33235673 C T VPS52 Missense_Mutation p.R301H 0.72 deleterious(0) possibly_damaging(0.86) TCGA-ND-A4WC-01 6 33236869 33236869 C T VPS52 Missense_Mutation p.R157Q 0.72 tolerated(0.76) benign(0.044) TCGA-ND-A4WC-01 6 34026885 34026885 C T GRM4 Missense_Mutation p.R298Q 0.36 tolerated(0.14) benign(0.254) TCGA-ND-A4WC-01 6 35425738 35425738 C A FANCE Missense_Mutation p.L316I 0.72 deleterious(0) probably_damaging(0.971) TCGA-ND-A4WC-01 6 38750826 38750826 G A DNAH8 Missense_Mutation p.R552H 0.35 probably_damaging(0.954) TCGA-ND-A4WC-01 6 38810148 38810148 G T DNAH8 Nonsense_Mutation p.E1274* 0.67 TCGA-ND-A4WC-01 6 38810576 38810576 G T DNAH8 Missense_Mutation p.R1364I 0.76 probably_damaging(0.976) TCGA-ND-A4WC-01 6 38813386 38813386 G A DNAH8 Missense_Mutation p.E1411K 0.68 benign(0.097) TCGA-ND-A4WC-01 6 38913287 38913287 C T DNAH8 Missense_Mutation p.R3801C 0.73 probably_damaging(0.953) TCGA-ND-A4WC-01 6 40399910 40399910 C T LRFN2 Missense_Mutation p.D315N 0.31 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 6 4073522 4073522 T C FAM217A Missense_Mutation p.T97A 0.36 tolerated(0.18) benign(0.023) TCGA-ND-A4WC-01 6 42023720 42023720 C A TAF8 Missense_Mutation p.A111E 0.63 deleterious(0) probably_damaging(0.933) TCGA-ND-A4WC-01 6 42858531 42858531 G A C6orf226 5'UTR 0.66 TCGA-ND-A4WC-01 6 43273406 43273406 C A CRIP3 3'UTR 0.70 TCGA-ND-A4WC-01 6 43406363 43406363 C T ABCC10 Silent p.L653L 0.28 TCGA-ND-A4WC-01 6 43501728 43501728 A G XPO5 Missense_Mutation p.Y787H 0.30 deleterious(0.04) possibly_damaging(0.707) TCGA-ND-A4WC-01 6 44117685 44117685 T C TMEM63B Silent p.F501F 0.14 TCGA-ND-A4WC-01 6 44310906 44310906 G A SPATS1 Missense_Mutation p.G25D 0.31 tolerated_low_confidence(0.28) benign(0.004) TCGA-ND-A4WC-01 6 44393877 44393877 G A CDC5L Missense_Mutation p.R536Q 0.29 tolerated(0.21) benign(0.167) TCGA-ND-A4WC-01 6 45390244 45390244 T G RUNX2 Intron 0.41 TCGA-ND-A4WC-01 6 46555824 46555824 A C CYP39A1 Missense_Mutation p.F370V 0.36 deleterious(0) probably_damaging(0.969) TCGA-ND-A4WC-01 6 46620386 46620386 C T CYP39A1 5'UTR 0.27 TCGA-ND-A4WC-01 6 46659193 46659193 G T TDRD6 Nonsense_Mutation p.E1110* 0.33 TCGA-ND-A4WC-01 6 46660805 46660805 C A TDRD6 Missense_Mutation p.S1647Y 0.33 deleterious(0.05) possibly_damaging(0.615) TCGA-ND-A4WC-01 6 46679328 46679328 A C PLA2G7 Missense_Mutation p.F190V 0.36 tolerated(0.08) possibly_damaging(0.894) TCGA-ND-A4WC-01 6 46826811 46826811 C A GPR116 Missense_Mutation p.K943N 0.34 tolerated(0.08) possibly_damaging(0.558) TCGA-ND-A4WC-01 6 46979827 46979827 A C GPR110 Missense_Mutation p.N344K 0.37 deleterious(0) benign(0.357) TCGA-ND-A4WC-01 6 46995498 46995498 C T GPR110 Splice_Site p.X24_splice 0.18 TCGA-ND-A4WC-01 6 47200581 47200581 C T TNFRSF21 Missense_Mutation p.E630K 0.39 deleterious(0) probably_damaging(0.932) TCGA-ND-A4WC-01 6 47547185 47547185 A C CD2AP Missense_Mutation p.N323T 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 6 47776108 47776108 G T OPN5 Missense_Mutation p.K325N 0.08 deleterious(0.01) possibly_damaging(0.617) TCGA-ND-A4WC-01 6 47846423 47846423 G T PTCHD4 Silent p.I719I 0.32 TCGA-ND-A4WC-01 6 47846815 47846815 G A PTCHD4 Nonsense_Mutation p.R589* 0.13 TCGA-ND-A4WC-01 6 47976683 47976683 G T PTCHD4 Missense_Mutation p.F198L 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-ND-A4WC-01 6 50811104 50811104 G T TFAP2B Nonstop_Mutation p.*461Lext*46 0.16 TCGA-ND-A4WC-01 6 50811108 50811108 A C TFAP2B 3'UTR 0.36 TCGA-ND-A4WC-01 6 51524480 51524480 G A PKHD1 Missense_Mutation p.R3482C 0.41 deleterious(0) probably_damaging(0.912) TCGA-ND-A4WC-01 6 51524753 51524753 C T PKHD1 Missense_Mutation p.E3391K 0.35 tolerated(0.06) benign(0.105) TCGA-ND-A4WC-01 6 51612695 51612695 C T PKHD1 Missense_Mutation p.R3240Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 6 52138700 52138700 C T MCM3 Silent p.K508K 0.31 TCGA-ND-A4WC-01 6 53363477 53363477 T C GCLC 3'UTR 0.40 TCGA-ND-A4WC-01 6 53785453 53785453 A C LRRC1 Missense_Mutation p.N437T 0.17 tolerated(0.08) benign(0.038) TCGA-ND-A4WC-01 6 54804852 54804852 T G FAM83B Missense_Mutation p.H361Q 0.08 tolerated(0.42) benign(0.004) TCGA-ND-A4WC-01 6 54806276 54806276 C T FAM83B Missense_Mutation p.S836L 0.31 deleterious(0) possibly_damaging(0.656) TCGA-ND-A4WC-01 6 55039482 55039482 G A HCRTR2 Missense_Mutation p.D33N 0.33 tolerated(0.38) benign(0.336) TCGA-ND-A4WC-01 6 55113604 55113604 C T HCRTR2 Missense_Mutation p.P131S 0.35 deleterious(0.01) possibly_damaging(0.899) TCGA-ND-A4WC-01 6 55147316 55147316 G T HCRTR2 3'UTR 0.44 TCGA-ND-A4WC-01 6 56417403 56417403 G T DST Missense_Mutation p.S2773Y 0.45 probably_damaging(0.968) TCGA-ND-A4WC-01 6 56470005 56470005 A C DST Intron 0.33 TCGA-ND-A4WC-01 6 56484298 56484298 G A DST Intron 0.23 TCGA-ND-A4WC-01 6 56485398 56485398 C A DST Intron 0.32 TCGA-ND-A4WC-01 6 56882055 56882055 G T BEND6 Missense_Mutation p.Q190H 0.35 deleterious(0) probably_damaging(0.979) TCGA-ND-A4WC-01 6 56882100 56882100 C T BEND6 Silent p.Y205Y 0.28 TCGA-ND-A4WC-01 6 57013143 57013143 C T ZNF451 Missense_Mutation p.R754C 0.34 deleterious(0.03) benign(0.141) TCGA-ND-A4WC-01 6 57183336 57183336 G A PRIM2 Silent p.Q31Q 0.33 TCGA-ND-A4WC-01 6 62995813 62995813 T C KHDRBS2 Missense_Mutation p.K14R 0.30 tolerated(0.08) probably_damaging(0.971) TCGA-ND-A4WC-01 6 64004906 64004906 C A LGSN Missense_Mutation p.M25I 0.29 tolerated_low_confidence(0.34) benign(0.001) TCGA-ND-A4WC-01 6 66200576 66200576 C T EYS Missense_Mutation p.G258D 0.17 tolerated(0.75) benign(0.017) TCGA-ND-A4WC-01 6 70386119 70386119 T G LMBRD1 Missense_Mutation p.K518N 0.21 deleterious(0) possibly_damaging(0.698) TCGA-ND-A4WC-01 6 70859890 70859890 C A COL19A1 Missense_Mutation p.P664T 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 6 71004214 71004214 G A COL9A1 Nonsense_Mutation p.R118* 0.38 TCGA-ND-A4WC-01 6 71233777 71233777 C A FAM135A Nonsense_Mutation p.S404* 0.43 TCGA-ND-A4WC-01 6 71235797 71235797 A C FAM135A Missense_Mutation p.N1004H 0.52 tolerated_low_confidence(0.11) benign(0.002) TCGA-ND-A4WC-01 6 71245997 71245997 C T FAM135A Missense_Mutation p.R1334C 0.36 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 6 71298498 71298498 T C C6orf57 3'UTR 0.50 TCGA-ND-A4WC-01 6 72806813 72806813 G A RIMS1 Missense_Mutation p.R136H 0.35 deleterious(0) benign(0.323) TCGA-ND-A4WC-01 6 72945357 72945357 C T RIMS1 Nonsense_Mutation p.R595* 0.14 TCGA-ND-A4WC-01 6 7373600 7373600 G T CAGE1 Missense_Mutation p.F484L 0.52 tolerated(0.5) probably_damaging(0.916) TCGA-ND-A4WC-01 6 73834249 73834249 C A KCNQ5 Intron 0.43 TCGA-ND-A4WC-01 6 74124304 74124304 C T DDX43 Missense_Mutation p.A547V 0.41 deleterious(0.02) possibly_damaging(0.764) TCGA-ND-A4WC-01 6 74227594 74227594 T C EEF1A1 Missense_Mutation p.K443R 0.34 deleterious_low_confidence(0.01) benign(0.013) TCGA-ND-A4WC-01 6 74325059 74325059 G A SLC17A5 Missense_Mutation p.R364C 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 6 74472181 74472181 A G CD109 Missense_Mutation p.K278R 0.38 tolerated(0.39) benign(0.002) TCGA-ND-A4WC-01 6 76023417 76023417 G A FILIP1 Missense_Mutation p.R711W 0.18 deleterious(0) probably_damaging(0.937) TCGA-ND-A4WC-01 6 76728558 76728558 G A IMPG1 Silent p.F228F 0.28 TCGA-ND-A4WC-01 6 78172516 78172516 T C HTR1B Missense_Mutation p.N202S 0.17 tolerated(0.12) possibly_damaging(0.781) TCGA-ND-A4WC-01 6 78172749 78172749 G T HTR1B Missense_Mutation p.F124L 0.32 tolerated(0.14) benign(0.001) TCGA-ND-A4WC-01 6 7886244 7886244 G A TXNDC5 Silent p.F332F 0.41 TCGA-ND-A4WC-01 6 79650668 79650668 T G PHIP Missense_Mutation p.K1736N 0.27 deleterious_low_confidence(0.01) benign(0.327) TCGA-ND-A4WC-01 6 79657392 79657392 A G PHIP Missense_Mutation p.V1385A 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-ND-A4WC-01 6 80717701 80717701 A C TTK Missense_Mutation p.Q105H 0.39 tolerated(0.13) benign(0.168) TCGA-ND-A4WC-01 6 80737720 80737720 A C TTK Missense_Mutation p.N505H 0.25 tolerated(0.07) benign(0.003) TCGA-ND-A4WC-01 6 8090502 8090502 A G EEF1E1 Missense_Mutation p.Y101H 0.50 tolerated(0.24) possibly_damaging(0.865) TCGA-ND-A4WC-01 6 80912855 80912855 G T BCKDHB Nonsense_Mutation p.E293* 0.39 TCGA-ND-A4WC-01 6 83848209 83848209 G A DOPEY1 Missense_Mutation p.R1483Q 0.35 deleterious(0.02) benign(0.154) TCGA-ND-A4WC-01 6 84302200 84302200 G T SNAP91 Missense_Mutation p.S635Y 0.29 deleterious(0.03) probably_damaging(0.982) TCGA-ND-A4WC-01 6 84649908 84649908 T G CYB5R4 Silent p.T414T 0.21 TCGA-ND-A4WC-01 6 84859327 84859327 G T KIAA1009 Missense_Mutation p.S1242Y 0.36 deleterious(0) probably_damaging(0.98) TCGA-ND-A4WC-01 6 87967813 87967813 T G ZNF292 Missense_Mutation p.I1489S 0.31 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 6 87969514 87969514 C T ZNF292 Missense_Mutation p.S2056F 0.36 deleterious(0.05) possibly_damaging(0.56) TCGA-ND-A4WC-01 6 90333247 90333247 G T ANKRD6 Missense_Mutation p.R339I 0.24 deleterious(0.04) benign(0.066) TCGA-ND-A4WC-01 6 90572627 90572627 C A CASP8AP2 RNA 0.12 TCGA-ND-A4WC-01 6 90578240 90578240 C A CASP8AP2 RNA 0.32 TCGA-ND-A4WC-01 6 90605648 90605648 G A GJA10 Silent p.P487P 0.33 TCGA-ND-A4WC-01 6 96651946 96651946 C T FUT9 Silent p.V305V 0.12 TCGA-ND-A4WC-01 6 97246800 97246800 G A GPR63 Missense_Mutation p.R270W 0.33 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 6 99323520 99323520 A C FBXL4 Missense_Mutation p.N491K 0.15 tolerated(0.05) benign(0.197) TCGA-ND-A4WC-01 6 99848627 99848627 G A PNISR Missense_Mutation p.S736F 0.43 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-ND-A4WC-01 6 99849197 99849197 G T PNISR Missense_Mutation p.S546Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-ND-A4WC-01 7 100203323 100203323 T C PCOLCE Missense_Mutation p.F205L 0.50 tolerated(0.12) possibly_damaging(0.524) TCGA-ND-A4WC-01 7 100240767 100240767 C A ACTL6B 3'UTR 0.20 TCGA-ND-A4WC-01 7 100349380 100349380 C A ZAN Missense_Mutation p.T551N 0.11 possibly_damaging(0.544) TCGA-ND-A4WC-01 7 100350691 100350691 A C ZAN Missense_Mutation p.E988A 0.37 unknown(0) TCGA-ND-A4WC-01 7 100363120 100363120 C T ZAN Silent p.L1471L 0.43 TCGA-ND-A4WC-01 7 100366245 100366245 A G ZAN Missense_Mutation p.N1685S 0.30 unknown(0) TCGA-ND-A4WC-01 7 100401201 100401201 C T EPHB4 Missense_Mutation p.R949Q 0.18 deleterious(0.01) probably_damaging(0.945) TCGA-ND-A4WC-01 7 100674925 100674925 C T MUC17 Silent p.V76V 0.39 TCGA-ND-A4WC-01 7 100685698 100685698 C A MUC17 Silent p.I3667I 0.36 TCGA-ND-A4WC-01 7 100695217 100695217 G T MUC17 Missense_Mutation p.Q4359H 0.36 unknown(0) TCGA-ND-A4WC-01 7 102016751 102016751 C T PRKRIP1 5'UTR 0.28 TCGA-ND-A4WC-01 7 102087367 102087367 C T ORAI2 Silent p.F211F 0.25 TCGA-ND-A4WC-01 7 102952994 102952994 A C DNAJC2 3'UTR 0.27 TCGA-ND-A4WC-01 7 1037352 1037352 G A C7orf50 Missense_Mutation p.A165V 0.43 tolerated(0.06) benign(0.348) TCGA-ND-A4WC-01 7 104746064 104746064 G T KMT2E Missense_Mutation p.R792I 0.12 deleterious(0) benign(0.308) TCGA-ND-A4WC-01 7 104801000 104801000 T G SRPK2 Missense_Mutation p.N192T 0.39 deleterious(0) benign(0.309) TCGA-ND-A4WC-01 7 105672986 105672986 G A CDHR3 Missense_Mutation p.R834K 0.33 tolerated(0.35) benign(0.039) TCGA-ND-A4WC-01 7 107323664 107323664 T G SLC26A4 Missense_Mutation p.F261L 0.37 tolerated(0.19) probably_damaging(0.988) TCGA-ND-A4WC-01 7 107635333 107635333 T G LAMB1 Missense_Mutation p.K141T 0.36 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 7 107669496 107669496 C T LAMB4 Missense_Mutation p.R1713K 0.21 tolerated(0.07) benign(0.149) TCGA-ND-A4WC-01 7 107832197 107832197 C T NRCAM Missense_Mutation p.A627T 0.27 deleterious(0.02) probably_damaging(0.937) TCGA-ND-A4WC-01 7 108212299 108212299 G T DNAJB9 Missense_Mutation p.K43N 0.33 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 7 111418353 111418353 G T DOCK4 Missense_Mutation p.L1211I 0.34 tolerated(0.12) benign(0.297) TCGA-ND-A4WC-01 7 111541793 111541793 G A DOCK4 Silent p.S419S 0.23 TCGA-ND-A4WC-01 7 111584871 111584871 C T DOCK4 Missense_Mutation p.R280Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 7 111976201 111976201 C T ZNF277 Missense_Mutation p.R282W 0.25 deleterious(0) possibly_damaging(0.462) TCGA-ND-A4WC-01 7 112461939 112461939 G A C7orf60 Nonsense_Mutation p.R360* 0.22 TCGA-ND-A4WC-01 7 112724250 112724250 T C GPR85 Missense_Mutation p.H176R 0.27 deleterious(0.01) benign(0.215) TCGA-ND-A4WC-01 7 113519003 113519003 G T PPP1R3A Missense_Mutation p.S715Y 0.30 deleterious(0) probably_damaging(0.986) TCGA-ND-A4WC-01 7 113519436 113519436 C T PPP1R3A Missense_Mutation p.A571T 0.42 tolerated(1) benign(0) TCGA-ND-A4WC-01 7 114282503 114282503 G T FOXP2 Nonsense_Mutation p.E297* 0.42 TCGA-ND-A4WC-01 7 11485733 11485733 C T THSD7A Missense_Mutation p.D1007N 0.34 tolerated(0.12) probably_damaging(0.98) TCGA-ND-A4WC-01 7 116140470 116140470 C A CAV2 Missense_Mutation p.L103I 0.29 deleterious(0.04) benign(0.032) TCGA-ND-A4WC-01 7 116371750 116371750 A G MET Missense_Mutation p.E410G 0.37 tolerated(0.39) benign(0.281) TCGA-ND-A4WC-01 7 117024855 117024855 A G ASZ1 Silent p.L204L 0.31 TCGA-ND-A4WC-01 7 117230480 117230480 G T CFTR Nonsense_Mutation p.E585* 0.39 TCGA-ND-A4WC-01 7 117417761 117417761 A C CTTNBP2 Missense_Mutation p.L861R 0.32 deleterious(0) probably_damaging(0.993) TCGA-ND-A4WC-01 7 119914842 119914842 C T KCND2 Silent p.F52F 0.33 TCGA-ND-A4WC-01 7 120876773 120876773 T C CPED1 Silent p.C687C 0.20 TCGA-ND-A4WC-01 7 120978941 120978941 G A WNT16 Missense_Mutation p.A214T 0.27 tolerated(0.35) benign(0.025) TCGA-ND-A4WC-01 7 121651537 121651537 T C PTPRZ1 Missense_Mutation p.S813P 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ND-A4WC-01 7 123104994 123104994 C A IQUB Nonsense_Mutation p.G551* 0.32 TCGA-ND-A4WC-01 7 123332489 123332489 T G WASL Missense_Mutation p.K420T 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 7 124404113 124404113 C A GPR37 Missense_Mutation p.W306C 0.18 deleterious(0.03) probably_damaging(0.974) TCGA-ND-A4WC-01 7 126544109 126544109 C A GRM8 Missense_Mutation p.G312V 0.28 deleterious(0) possibly_damaging(0.852) TCGA-ND-A4WC-01 7 126698152 126698152 C T GRM8 Intron 0.56 TCGA-ND-A4WC-01 7 12675689 12675689 C T SCIN Nonsense_Mutation p.R447* 0.27 TCGA-ND-A4WC-01 7 127236471 127236471 C T FSCN3 Missense_Mutation p.R311C 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-ND-A4WC-01 7 127255411 127255411 C T PAX4 Intron 0.31 TCGA-ND-A4WC-01 7 12728459 12728459 C T ARL4A Missense_Mutation p.R194W 0.27 deleterious(0) unknown(0) TCGA-ND-A4WC-01 7 127721475 127721475 C T SND1 Nonsense_Mutation p.R678* 0.41 TCGA-ND-A4WC-01 7 127726997 127726997 T C SND1 Missense_Mutation p.V771A 0.09 tolerated(0.23) benign(0.03) TCGA-ND-A4WC-01 7 128317859 128317859 G A FAM71F2 Missense_Mutation p.E203K 0.31 tolerated(0.17) benign(0.025) TCGA-ND-A4WC-01 7 128415645 128415645 T C OPN1SW Missense_Mutation p.Q67R 0.30 tolerated(0.05) benign(0.4) TCGA-ND-A4WC-01 7 129045047 129045047 C A AHCYL2 Missense_Mutation p.L379I 0.16 tolerated(0.23) benign(0.426) TCGA-ND-A4WC-01 7 129100195 129100195 G T STRIP2 Missense_Mutation p.E486D 0.29 tolerated(0.59) benign(0.013) TCGA-ND-A4WC-01 7 129658432 129658432 A C ZC3HC1 3'UTR 0.44 TCGA-ND-A4WC-01 7 131866291 131866291 C T PLXNA4 Missense_Mutation p.R1114K 0.31 tolerated(0.2) benign(0.034) TCGA-ND-A4WC-01 7 131872281 131872281 G A PLXNA4 Missense_Mutation p.A981V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 7 131912214 131912214 C A PLXNA4 Missense_Mutation p.E626D 0.27 tolerated(0.7) benign(0.002) TCGA-ND-A4WC-01 7 135078870 135078870 A G CNOT4 Missense_Mutation p.F476S 0.35 deleterious(0.01) benign(0.086) TCGA-ND-A4WC-01 7 135433486 135433486 A C FAM180A 5'UTR 0.38 TCGA-ND-A4WC-01 7 138329467 138329467 C T SVOPL Missense_Mutation p.V262I 0.25 tolerated(0.75) benign(0.001) TCGA-ND-A4WC-01 7 138601497 138601497 T G KIAA1549 Missense_Mutation p.T959P 0.24 deleterious(0.01) benign(0.398) TCGA-ND-A4WC-01 7 138732336 138732336 G A ZC3HAV1 3'UTR 0.31 TCGA-ND-A4WC-01 7 138845780 138845780 T G TTC26 Intron 0.32 TCGA-ND-A4WC-01 7 140380894 140380894 A C ADCK2 Missense_Mutation p.K421T 0.28 deleterious(0) possibly_damaging(0.77) TCGA-ND-A4WC-01 7 140710232 140710232 G T MRPS33 Missense_Mutation p.L68I 0.38 tolerated(0.18) benign(0.068) TCGA-ND-A4WC-01 7 141463915 141463915 G A TAS2R3 5'UTR 0.11 TCGA-ND-A4WC-01 7 141464029 141464029 A C TAS2R3 Missense_Mutation p.N24T 0.31 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 7 141631561 141631561 C A CLEC5A Missense_Mutation p.E137D 0.35 tolerated(0.05) benign(0.001) TCGA-ND-A4WC-01 7 141705362 141705362 C A MGAM Missense_Mutation p.T11N 0.50 tolerated(0.11) benign(0.002) TCGA-ND-A4WC-01 7 141727464 141727464 C T MGAM Missense_Mutation p.R384C 0.41 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 7 142008744 142008744 C A TRBV3-1 Missense_Mutation p.L73I 0.30 tolerated(0.07) possibly_damaging(0.513) TCGA-ND-A4WC-01 7 142013066 142013066 C A TRBV4-1 Missense_Mutation p.L11I 0.36 tolerated(0.11) unknown(0) TCGA-ND-A4WC-01 7 142326512 142326512 C A TRBV19 5'UTR 0.21 TCGA-ND-A4WC-01 7 142326879 142326879 G A TRBV19 Silent p.G59G 0.38 TCGA-ND-A4WC-01 7 142364571 142364571 T C TRBV24-1 Missense_Mutation p.F69S 0.35 tolerated(0.33) benign(0.003) TCGA-ND-A4WC-01 7 142511022 142511022 C A TRBV30 5'UTR 0.44 TCGA-ND-A4WC-01 7 142651036 142651036 G A KEL Missense_Mutation p.A311V 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-ND-A4WC-01 7 143098425 143098425 A G EPHA1 Missense_Mutation p.F142L 0.34 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 7 143701692 143701692 C A OR6B1 Silent p.I201I 0.21 TCGA-ND-A4WC-01 7 143807156 143807156 C A OR2A2 Missense_Mutation p.L161I 0.35 deleterious(0) possibly_damaging(0.893) TCGA-ND-A4WC-01 7 144060321 144060321 G A ARHGEF5 Missense_Mutation p.E187K 0.22 tolerated(0.32) benign(0.001) TCGA-ND-A4WC-01 7 144075919 144075919 G T ARHGEF5 Missense_Mutation p.E1532D 0.33 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 7 146818172 146818172 C A CNTNAP2 Silent p.R286R 0.19 TCGA-ND-A4WC-01 7 147869473 147869473 A C CNTNAP2 Silent p.G971G 0.29 TCGA-ND-A4WC-01 7 148543633 148543633 C A EZH2 Nonsense_Mutation p.E59* 0.43 TCGA-ND-A4WC-01 7 148947339 148947339 G A ZNF212 Silent p.E38E 0.44 TCGA-ND-A4WC-01 7 149491951 149491951 T G SSPO RNA 0.38 TCGA-ND-A4WC-01 7 149495167 149495167 G T SSPO RNA 0.41 TCGA-ND-A4WC-01 7 150164222 150164222 G T GIMAP8 Missense_Mutation p.D146Y 0.33 deleterious(0) probably_damaging(0.975) TCGA-ND-A4WC-01 7 150217465 150217465 G T GIMAP7 Nonsense_Mutation p.E135* 0.20 TCGA-ND-A4WC-01 7 150692348 150692348 G T NOS3 Missense_Mutation p.K72N 0.27 deleterious(0.02) possibly_damaging(0.773) TCGA-ND-A4WC-01 7 150698909 150698909 C T NOS3 Silent p.N501N 0.45 TCGA-ND-A4WC-01 7 150739111 150739111 G A ABCB8 Missense_Mutation p.D561N 0.37 tolerated(0.07) possibly_damaging(0.721) TCGA-ND-A4WC-01 7 151873887 151873887 C T KMT2C Missense_Mutation p.R2884Q 0.33 benign(0.001) TCGA-ND-A4WC-01 7 151945099 151945099 G T KMT2C Missense_Mutation p.S807Y 0.09 possibly_damaging(0.707) TCGA-ND-A4WC-01 7 151945640 151945640 C A KMT2C Missense_Mutation p.D627Y 0.11 benign(0.011) TCGA-ND-A4WC-01 7 151970902 151970902 C A KMT2C Missense_Mutation p.E300D 0.12 benign(0.047) TCGA-ND-A4WC-01 7 152139670 152139670 G A AC005631.1 3'Flank 0.53 TCGA-ND-A4WC-01 7 152346402 152346402 T G XRCC2 Missense_Mutation p.E56D 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 7 154593165 154593165 C T DPP6 Missense_Mutation p.S467L 0.38 tolerated(0.22) benign(0.185) TCGA-ND-A4WC-01 7 154667694 154667694 C T DPP6 Silent p.G654G 0.37 TCGA-ND-A4WC-01 7 155295664 155295664 A C CNPY1 3'UTR 0.62 TCGA-ND-A4WC-01 7 156450909 156450909 G A RNF32 Missense_Mutation p.D180N 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-ND-A4WC-01 7 156451252 156451252 C A RNF32 Missense_Mutation p.F224L 0.35 deleterious(0) possibly_damaging(0.751) TCGA-ND-A4WC-01 7 20418911 20418911 A C ITGB8 Missense_Mutation p.N209T 0.38 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 7 20685489 20685489 G T ABCB5 Missense_Mutation p.E263D 0.08 tolerated(0.25) benign(0.018) TCGA-ND-A4WC-01 7 21646328 21646328 A C DNAH11 Missense_Mutation p.N1277H 0.31 benign(0.078) TCGA-ND-A4WC-01 7 21675657 21675657 C T DNAH11 Nonsense_Mutation p.R1562* 0.25 TCGA-ND-A4WC-01 7 21747358 21747358 G A DNAH11 Silent p.Q2203Q 0.28 TCGA-ND-A4WC-01 7 22349699 22349699 C T RAPGEF5 5'UTR 0.19 TCGA-ND-A4WC-01 7 23349169 23349169 T G MALSU1 3'UTR 0.27 TCGA-ND-A4WC-01 7 23387299 23387299 G A IGF2BP3 Silent p.I246I 0.34 TCGA-ND-A4WC-01 7 23547091 23547091 T C TRA2A Missense_Mutation p.T197A 0.28 deleterious(0) probably_damaging(0.995) TCGA-ND-A4WC-01 7 23556145 23556145 G A TRA2A Missense_Mutation p.S58L 0.27 tolerated_low_confidence(0.12) benign(0.32) TCGA-ND-A4WC-01 7 23740474 23740474 G T FAM221A Missense_Mutation p.R272L 0.36 deleterious(0) possibly_damaging(0.806) TCGA-ND-A4WC-01 7 23811882 23811882 G T STK31 Missense_Mutation p.K650N 0.39 deleterious(0) possibly_damaging(0.883) TCGA-ND-A4WC-01 7 23871984 23871984 A C STK31 Nonstop_Mutation p.*1020Sext*29 0.29 TCGA-ND-A4WC-01 7 24846441 24846441 T C OSBPL3 Missense_Mutation p.K800E 0.26 tolerated(0.11) benign(0.005) TCGA-ND-A4WC-01 7 27203181 27203181 C A HOXA9 3'UTR 0.37 TCGA-ND-A4WC-01 7 27203258 27203258 C A HOXA9 Missense_Mutation p.M261I 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-ND-A4WC-01 7 27282795 27282795 G A EVX1 Missense_Mutation p.S49N 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 7 27582659 27582659 A C HIBADH Missense_Mutation p.F182C 0.19 tolerated(0.05) probably_damaging(0.99) TCGA-ND-A4WC-01 7 27935032 27935032 G T JAZF1 Missense_Mutation p.F64L 0.27 tolerated(0.07) probably_damaging(0.969) TCGA-ND-A4WC-01 7 29111427 29111427 C A CPVL Nonsense_Mutation p.E276* 0.08 TCGA-ND-A4WC-01 7 29111954 29111954 C T CPVL Missense_Mutation p.G232E 0.37 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 7 2966401 2966401 G A CARD11 Silent p.S593S 0.12 TCGA-ND-A4WC-01 7 29727089 29727089 G T DPY19L2P3 Intron 0.53 TCGA-ND-A4WC-01 7 31617627 31617627 G A CCDC129 Missense_Mutation p.R276Q 0.29 tolerated(0.65) benign(0.043) TCGA-ND-A4WC-01 7 31617807 31617807 C A CCDC129 Missense_Mutation p.S336Y 0.61 tolerated(0.72) benign(0.441) TCGA-ND-A4WC-01 7 31692174 31692174 A C CCDC129 Missense_Mutation p.N982H 0.33 tolerated(0.07) benign(0.11) TCGA-ND-A4WC-01 7 31732027 31732027 G T PPP1R17 5'UTR 0.38 TCGA-ND-A4WC-01 7 32526906 32526906 C T LSM5 Splice_Site p.X82_splice 0.50 TCGA-ND-A4WC-01 7 34192974 34192974 C A BMPER 3'UTR 0.29 TCGA-ND-A4WC-01 7 34888160 34888160 G A NPSR1 Missense_Mutation p.D304N 0.36 tolerated(0.37) benign(0.009) TCGA-ND-A4WC-01 7 36459027 36459027 A C ANLN Missense_Mutation p.N603T 0.48 tolerated(0.08) probably_damaging(0.986) TCGA-ND-A4WC-01 7 37264564 37264564 C T ELMO1 Silent p.S207S 0.33 TCGA-ND-A4WC-01 7 37890277 37890277 A G NME8 Silent p.Q46Q 0.35 TCGA-ND-A4WC-01 7 38431504 38431504 G A AMPH Missense_Mutation p.P575S 0.40 tolerated(0.43) benign(0.009) TCGA-ND-A4WC-01 7 38725348 38725348 C A FAM183B Missense_Mutation p.Q86H 0.10 deleterious(0.01) possibly_damaging(0.628) TCGA-ND-A4WC-01 7 39611989 39611989 A T YAE1D1 Missense_Mutation p.K122I 0.30 deleterious(0.05) possibly_damaging(0.472) TCGA-ND-A4WC-01 7 40899972 40899972 T C SUGCT Missense_Mutation p.L437P 0.31 deleterious(0) probably_damaging(0.978) TCGA-ND-A4WC-01 7 42005605 42005605 C T GLI3 Silent p.P1022P 0.41 TCGA-ND-A4WC-01 7 42116368 42116368 C T GLI3 Silent p.P152P 0.43 TCGA-ND-A4WC-01 7 4308339 4308339 C A SDK1 3'UTR 0.35 TCGA-ND-A4WC-01 7 44154947 44154947 G A POLD2 Missense_Mutation p.P399L 0.42 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 7 44739760 44739760 C T OGDH Silent p.F817F 0.34 TCGA-ND-A4WC-01 7 48315509 48315509 G T ABCA13 Missense_Mutation p.M2082I 0.16 benign(0) TCGA-ND-A4WC-01 7 4901062 4901062 C T PAPOLB Missense_Mutation p.R126Q 0.39 deleterious(0) possibly_damaging(0.901) TCGA-ND-A4WC-01 7 50129291 50129291 G A ZPBP Nonsense_Mutation p.R48* 0.31 TCGA-ND-A4WC-01 7 50513646 50513646 T G FIGNL1 Missense_Mutation p.K447T 0.43 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 7 51111094 51111094 C A COBL Missense_Mutation p.E464D 0.10 tolerated(0.34) benign(0.093) TCGA-ND-A4WC-01 7 5338985 5338985 G A SLC29A4 Missense_Mutation p.R379H 0.12 tolerated(0.23) benign(0.035) TCGA-ND-A4WC-01 7 5568242 5568242 C T ACTB Missense_Mutation p.G158R 0.26 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-ND-A4WC-01 7 55863599 55863599 G T SEPT14 3'UTR 0.27 TCGA-ND-A4WC-01 7 55873084 55873084 C A SEPT14 Splice_Site p.X329_splice 0.27 TCGA-ND-A4WC-01 7 57188340 57188340 C A ZNF479 Missense_Mutation p.R261I 0.42 tolerated(0.34) benign(0.004) TCGA-ND-A4WC-01 7 57529030 57529030 G T ZNF716 Missense_Mutation p.R288I 0.69 tolerated(0.48) benign(0.427) TCGA-ND-A4WC-01 7 6054938 6054938 G A AIMP2 Silent p.T99T 0.32 TCGA-ND-A4WC-01 7 62752332 62752332 C A ZNF733P RNA 0.31 TCGA-ND-A4WC-01 7 63982090 63982090 T C ZNF680 Missense_Mutation p.K348E 0.19 deleterious(0) possibly_damaging(0.762) TCGA-ND-A4WC-01 7 63982573 63982573 A C ZNF680 Missense_Mutation p.C187G 0.33 deleterious(0.01) possibly_damaging(0.656) TCGA-ND-A4WC-01 7 64152260 64152260 C G ZNF107 5'UTR 0.31 TCGA-ND-A4WC-01 7 65705768 65705768 A G TPST1 Missense_Mutation p.K119R 0.37 tolerated(0.72) benign(0.03) TCGA-ND-A4WC-01 7 70227923 70227923 G T AUTS2 Missense_Mutation p.K270N 0.34 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 7 70881033 70881033 G A WBSCR17 Missense_Mutation p.E250K 0.29 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 7 70885996 70885996 G T WBSCR17 Missense_Mutation p.E289D 0.31 tolerated(0.31) probably_damaging(0.989) TCGA-ND-A4WC-01 7 71177191 71177191 C A WBSCR17 3'UTR 0.47 TCGA-ND-A4WC-01 7 72733015 72733015 C T TRIM50 Missense_Mutation p.E178K 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-ND-A4WC-01 7 7273978 7273978 T G C1GALT1 Missense_Mutation p.L10V 0.34 tolerated(0.28) benign(0.115) TCGA-ND-A4WC-01 7 72849234 72849234 C T FZD9 Silent p.G299G 0.36 TCGA-ND-A4WC-01 7 74173174 74173174 T C GTF2I 3'UTR 0.42 TCGA-ND-A4WC-01 7 74197898 74197898 G T NCF1 Missense_Mutation p.R202L 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-ND-A4WC-01 7 77166889 77166889 A C PTPN12 Missense_Mutation p.K9T 0.35 deleterious(0.05) benign(0.001) TCGA-ND-A4WC-01 7 77240094 77240094 G T PTPN12 Nonsense_Mutation p.E259* 0.30 TCGA-ND-A4WC-01 7 77378805 77378805 G T RSBN1L Missense_Mutation p.K256N 0.38 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 7 77579062 77579062 C T PHTF2 Missense_Mutation p.S642L 0.42 deleterious(0.01) benign(0.422) TCGA-ND-A4WC-01 7 77885413 77885413 G T MAGI2 Missense_Mutation p.L632I 0.41 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 7 81978960 81978960 T G CACNA2D1 Missense_Mutation p.K34T 0.15 deleterious(0.04) probably_damaging(0.977) TCGA-ND-A4WC-01 7 82538315 82538315 G A PCLO Missense_Mutation p.R4439C 0.35 unknown(0) TCGA-ND-A4WC-01 7 82544538 82544538 A C PCLO Missense_Mutation p.F4255C 0.29 unknown(0) TCGA-ND-A4WC-01 7 82996969 82996969 G T SEMA3E Missense_Mutation p.P754H 0.27 tolerated(0.1) possibly_damaging(0.471) TCGA-ND-A4WC-01 7 83014659 83014659 G A SEMA3E Missense_Mutation p.A609V 0.39 deleterious(0) probably_damaging(0.929) TCGA-ND-A4WC-01 7 83823879 83823879 G A SEMA3A Silent p.V8V 0.38 TCGA-ND-A4WC-01 7 84628732 84628732 C A SEMA3D 3'UTR 0.32 TCGA-ND-A4WC-01 7 86825939 86825939 C T TMEM243 3'UTR 0.41 TCGA-ND-A4WC-01 7 87035618 87035618 C T ABCB4 Missense_Mutation p.E1165K 0.09 tolerated(0.12) possibly_damaging(0.87) TCGA-ND-A4WC-01 7 87043015 87043015 C T ABCB4 Missense_Mutation p.E901K 0.34 tolerated(0.06) benign(0.417) TCGA-ND-A4WC-01 7 87168615 87168615 C T ABCB1 Missense_Mutation p.R789Q 0.33 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 7 87196193 87196193 T G ABCB1 Missense_Mutation p.K146N 0.31 deleterious(0.02) benign(0.392) TCGA-ND-A4WC-01 7 87913198 87913198 G A STEAP4 Silent p.H129H 0.26 TCGA-ND-A4WC-01 7 88389380 88389380 G T ZNF804B Missense_Mutation p.K30N 0.28 deleterious(0) possibly_damaging(0.755) TCGA-ND-A4WC-01 7 88423783 88423783 G A C7orf62 Silent p.L158L 0.29 TCGA-ND-A4WC-01 7 88962766 88962766 G T ZNF804B Missense_Mutation p.R157I 0.41 deleterious(0) possibly_damaging(0.873) TCGA-ND-A4WC-01 7 88964251 88964251 G T ZNF804B Missense_Mutation p.R652I 0.39 deleterious(0.01) benign(0.035) TCGA-ND-A4WC-01 7 88964999 88964999 G T ZNF804B Missense_Mutation p.K901N 0.26 deleterious(0.05) benign(0.142) TCGA-ND-A4WC-01 7 89929205 89929205 C A C7orf63 Missense_Mutation p.L628I 0.47 tolerated(0.37) possibly_damaging(0.79) TCGA-ND-A4WC-01 7 89934069 89934069 T G C7orf63 Missense_Mutation p.L734V 0.41 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 7 91724364 91724364 A G AKAP9 Silent p.E3202E 0.33 TCGA-ND-A4WC-01 7 91755658 91755658 C A CYP51A1 Nonsense_Mutation p.E227* 0.32 TCGA-ND-A4WC-01 7 92131270 92131270 A C PEX1 Missense_Mutation p.F784V 0.30 deleterious(0.01) benign(0.005) TCGA-ND-A4WC-01 7 92158959 92158959 T G RBM48 Missense_Mutation p.F94C 0.32 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 7 92462505 92462505 C T CDK6 Missense_Mutation p.V45M 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-ND-A4WC-01 7 92761694 92761694 G T SAMD9L Missense_Mutation p.F1197L 0.39 deleterious(0) possibly_damaging(0.511) TCGA-ND-A4WC-01 7 92764273 92764273 T G SAMD9L Missense_Mutation p.N338H 0.15 tolerated(0.06) benign(0.012) TCGA-ND-A4WC-01 7 92838084 92838084 G T HEPACAM2 Missense_Mutation p.S274Y 0.08 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 7 92926544 92926544 G T CCDC132 Missense_Mutation p.K450N 0.17 deleterious(0.03) benign(0.205) TCGA-ND-A4WC-01 7 94052341 94052341 G T COL1A2 Missense_Mutation p.G826C 0.39 unknown(0) TCGA-ND-A4WC-01 7 94059752 94059752 C A COL1A2 3'UTR 0.24 TCGA-ND-A4WC-01 7 94059806 94059806 C A COL1A2 3'UTR 0.47 TCGA-ND-A4WC-01 7 94163031 94163031 C T CASD1 Missense_Mutation p.S182F 0.15 tolerated(0.08) benign(0.004) TCGA-ND-A4WC-01 7 94178860 94178860 A C CASD1 Missense_Mutation p.I577L 0.36 tolerated(0.09) benign(0.008) TCGA-ND-A4WC-01 7 94292899 94292899 G A PEG10 Missense_Mutation p.E11K 0.63 deleterious_low_confidence(0.02) possibly_damaging(0.76) TCGA-ND-A4WC-01 7 95813664 95813664 C A SLC25A13 Nonsense_Mutation p.E369* 0.10 TCGA-ND-A4WC-01 7 95813703 95813703 G A SLC25A13 Nonsense_Mutation p.R356* 0.43 TCGA-ND-A4WC-01 7 96650352 96650352 C A DLX5 Missense_Mutation p.R189I 0.32 deleterious(0) probably_damaging(0.985) TCGA-ND-A4WC-01 7 97788728 97788728 C A LMTK2 Missense_Mutation p.F216L 0.24 tolerated(0.15) benign(0.107) TCGA-ND-A4WC-01 7 98257875 98257875 C T NPTX2 Silent p.V410V 0.29 TCGA-ND-A4WC-01 7 98515126 98515126 C T TRRAP Missense_Mutation p.R816W 0.27 probably_damaging(1) TCGA-ND-A4WC-01 7 98519436 98519436 C T TRRAP Missense_Mutation p.L895F 0.37 probably_damaging(0.96) TCGA-ND-A4WC-01 7 98530911 98530911 G A TRRAP Silent p.Q1300Q 0.28 TCGA-ND-A4WC-01 7 98609882 98609882 C T TRRAP Silent p.F3828F 0.46 TCGA-ND-A4WC-01 7 99169914 99169914 A G ZNF655 Silent p.K96K 0.27 TCGA-ND-A4WC-01 7 99454470 99454470 C A CYP3A43 Missense_Mutation p.F271L 0.33 tolerated(0.09) benign(0.161) TCGA-ND-A4WC-01 7 99564860 99564860 C A AZGP1 Missense_Mutation p.K221N 0.27 tolerated(0.43) benign(0.101) TCGA-ND-A4WC-01 7 99798886 99798886 G A STAG3 Splice_Site p.X711_splice 0.26 TCGA-ND-A4WC-01 8 100523395 100523395 A G VPS13B Missense_Mutation p.K1455E 0.33 deleterious(0.01) possibly_damaging(0.608) TCGA-ND-A4WC-01 8 100568703 100568703 C T VPS13B Nonsense_Mutation p.R1616* 0.48 TCGA-ND-A4WC-01 8 100568745 100568745 G T VPS13B Missense_Mutation p.D1630Y 0.39 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 8 100779084 100779084 T G VPS13B Missense_Mutation p.V2403G 0.33 deleterious(0.03) possibly_damaging(0.713) TCGA-ND-A4WC-01 8 101084433 101084433 T G RGS22 Missense_Mutation p.K122T 0.15 deleterious(0.01) benign(0.118) TCGA-ND-A4WC-01 8 101117607 101117607 C A RGS22 Nonsense_Mutation p.E17* 0.43 TCGA-ND-A4WC-01 8 102381499 102381499 T G NACAP1 RNA 0.39 TCGA-ND-A4WC-01 8 103298680 103298680 G A UBR5 Missense_Mutation p.A1708V 0.45 tolerated(0.33) probably_damaging(0.97) TCGA-ND-A4WC-01 8 103572979 103572979 C T ODF1 Missense_Mutation p.S207F 0.44 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-ND-A4WC-01 8 104065041 104065041 G A ATP6V1C1 Missense_Mutation p.R155Q 0.34 deleterious(0.04) possibly_damaging(0.769) TCGA-ND-A4WC-01 8 104394840 104394840 T G CTHRC1 3'UTR 0.28 TCGA-ND-A4WC-01 8 104924348 104924348 G A RIMS2 Missense_Mutation p.R587H 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ND-A4WC-01 8 105368467 105368467 C T DCSTAMP 3'UTR 0.40 TCGA-ND-A4WC-01 8 105509413 105509413 A G LRP12 Missense_Mutation p.F456S 0.36 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 8 106811074 106811074 G T ZFPM2 Nonsense_Mutation p.E288* 0.28 TCGA-ND-A4WC-01 8 107691480 107691480 G A OXR1 Missense_Mutation p.R89Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 8 107705011 107705011 G A OXR1 Missense_Mutation p.R195Q 0.38 tolerated(0.11) probably_damaging(0.942) TCGA-ND-A4WC-01 8 107722985 107722985 A C OXR1 Missense_Mutation p.K588T 0.31 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 8 107773289 107773289 A C ABRA Missense_Mutation p.H374Q 0.37 tolerated(0.15) benign(0.038) TCGA-ND-A4WC-01 8 108348401 108348401 G T ANGPT1 Silent p.I184I 0.36 TCGA-ND-A4WC-01 8 110099941 110099941 T C TRHR Missense_Mutation p.L67P 0.29 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 8 110420308 110420308 T C PKHD1L1 Missense_Mutation p.V615A 0.32 tolerated(0.35) benign(0) TCGA-ND-A4WC-01 8 110504169 110504169 A G PKHD1L1 Silent p.G3394G 0.41 TCGA-ND-A4WC-01 8 110587072 110587072 C A SYBU 3'UTR 0.32 TCGA-ND-A4WC-01 8 11189077 11189077 C T SLC35G5 Silent p.L154L 0.42 TCGA-ND-A4WC-01 8 113246683 113246683 G A CSMD3 Missense_Mutation p.R3551C 0.29 deleterious(0) possibly_damaging(0.856) TCGA-ND-A4WC-01 8 113316973 113316973 C A CSMD3 Missense_Mutation p.R2748I 0.39 tolerated(0.13) possibly_damaging(0.806) TCGA-ND-A4WC-01 8 113529438 113529438 C T CSMD3 Silent p.A1527A 0.50 TCGA-ND-A4WC-01 8 113960026 113960026 C A CSMD3 Missense_Mutation p.D501Y 0.33 deleterious(0) probably_damaging(0.961) TCGA-ND-A4WC-01 8 11614543 11614543 C T GATA4 Missense_Mutation p.T366M 0.34 deleterious(0) possibly_damaging(0.517) TCGA-ND-A4WC-01 8 119941087 119941087 C T TNFRSF11B Missense_Mutation p.R161K 0.37 tolerated(0.53) benign(0.08) TCGA-ND-A4WC-01 8 120079578 120079578 C A COLEC10 Missense_Mutation p.L20I 0.33 tolerated(0.31) probably_damaging(0.978) TCGA-ND-A4WC-01 8 121243839 121243839 G T COL14A1 Missense_Mutation p.E777D 0.24 tolerated(0.56) benign(0.047) TCGA-ND-A4WC-01 8 121528236 121528236 G A MTBP Missense_Mutation p.R684H 0.31 deleterious(0.04) probably_damaging(0.958) TCGA-ND-A4WC-01 8 122641078 122641078 G A HAS2 Missense_Mutation p.S168L 0.32 tolerated(0.31) benign(0) TCGA-ND-A4WC-01 8 124027675 124027675 G A DERL1 3'UTR 0.32 TCGA-ND-A4WC-01 8 124243893 124243893 C A C8orf76 Missense_Mutation p.Q154H 0.33 deleterious(0.01) benign(0.258) TCGA-ND-A4WC-01 8 124358483 124358483 C T ATAD2 Missense_Mutation p.R792Q 0.26 deleterious(0) probably_damaging(0.971) TCGA-ND-A4WC-01 8 124453816 124453816 C A WDYHV1 3'UTR 0.45 TCGA-ND-A4WC-01 8 124663962 124663962 T G KLHL38 Missense_Mutation p.E402A 0.12 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 8 124701112 124701112 G A ANXA13 Silent p.L280L 0.38 TCGA-ND-A4WC-01 8 125088538 125088538 C T FER1L6 Missense_Mutation p.P1398S 0.37 tolerated(0.81) probably_damaging(1) TCGA-ND-A4WC-01 8 125131132 125131132 G T FER1L6 Missense_Mutation p.E1779D 0.24 deleterious(0.03) benign(0.405) TCGA-ND-A4WC-01 8 125499514 125499514 G T RNF139 Nonsense_Mutation p.E542* 0.28 TCGA-ND-A4WC-01 8 12594474 12594474 A C LONRF1 Missense_Mutation p.L430W 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-ND-A4WC-01 8 126056266 126056266 A G KIAA0196 Missense_Mutation p.M913T 0.28 tolerated(0.76) benign(0.021) TCGA-ND-A4WC-01 8 12878856 12878856 G A KIAA1456 Missense_Mutation p.R223K 0.26 tolerated(0.93) benign(0.081) TCGA-ND-A4WC-01 8 130772804 130772804 T G GSDMC Missense_Mutation p.R236S 0.11 tolerated(0.09) benign(0.023) TCGA-ND-A4WC-01 8 133627334 133627334 G T LRRC6 Missense_Mutation p.F308L 0.10 deleterious(0) probably_damaging(0.95) TCGA-ND-A4WC-01 8 133900320 133900320 C T TG Silent p.S756S 0.39 TCGA-ND-A4WC-01 8 133961050 133961050 C T TG Missense_Mutation p.P1755S 0.36 deleterious(0) probably_damaging(0.962) TCGA-ND-A4WC-01 8 134031925 134031925 C A TG Missense_Mutation p.F2287L 0.36 deleterious(0) probably_damaging(0.93) TCGA-ND-A4WC-01 8 134232915 134232915 C T WISP1 Silent p.I147I 0.33 TCGA-ND-A4WC-01 8 139153578 139153578 G T FAM135B Missense_Mutation p.S1218Y 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 8 139160910 139160910 T G FAM135B Missense_Mutation p.K1101Q 0.18 deleterious(0.01) possibly_damaging(0.564) TCGA-ND-A4WC-01 8 139164359 139164359 C T FAM135B Missense_Mutation p.D787N 0.39 deleterious(0.04) benign(0.146) TCGA-ND-A4WC-01 8 139164633 139164633 G A FAM135B Silent p.V695V 0.35 TCGA-ND-A4WC-01 8 139620199 139620199 G A COL22A1 Missense_Mutation p.P1338S 0.23 unknown(0) TCGA-ND-A4WC-01 8 139845316 139845316 G A COL22A1 Missense_Mutation p.R271W 0.31 unknown(0) TCGA-ND-A4WC-01 8 140922403 140922403 G A TRAPPC9 Silent p.I1082I 0.37 TCGA-ND-A4WC-01 8 142154302 142154302 G T DENND3 Missense_Mutation p.D147Y 0.16 deleterious(0) probably_damaging(0.936) TCGA-ND-A4WC-01 8 142186774 142186774 G A DENND3 Missense_Mutation p.E794K 0.36 deleterious(0.03) probably_damaging(0.984) TCGA-ND-A4WC-01 8 143570434 143570434 C T BAI1 Missense_Mutation p.L831F 0.24 deleterious(0.03) possibly_damaging(0.849) TCGA-ND-A4WC-01 8 143957711 143957711 C T CYP11B1 Silent p.S300S 0.26 TCGA-ND-A4WC-01 8 144808233 144808233 T C FAM83H Missense_Mutation p.Y1133C 0.32 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 8 144941131 144941131 G C EPPK1 Missense_Mutation p.D2097E 0.08 benign(0.001) TCGA-ND-A4WC-01 8 144994413 144994413 G T PLEC Nonsense_Mutation p.Y3329* 0.30 TCGA-ND-A4WC-01 8 145541355 145541355 C A DGAT1 Missense_Mutation p.Q305H 0.35 tolerated(0.12) benign(0.055) TCGA-ND-A4WC-01 8 146279537 146279537 C A C8orf33 Missense_Mutation p.F228L 0.33 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 8 15508212 15508212 T G TUSC3 Silent p.A105A 0.38 TCGA-ND-A4WC-01 8 17074756 17074756 G T ZDHHC2 Splice_Site 0.48 TCGA-ND-A4WC-01 8 17507410 17507410 A C MTUS1 Missense_Mutation p.I1149S 0.32 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 8 17611644 17611644 C A MTUS1 Missense_Mutation p.R558I 0.32 deleterious(0) possibly_damaging(0.847) TCGA-ND-A4WC-01 8 19684066 19684066 C A INTS10 Missense_Mutation p.T379N 0.36 tolerated(0.17) benign(0.241) TCGA-ND-A4WC-01 8 19709225 19709225 G A INTS10 Missense_Mutation p.R681H 0.30 deleterious(0) possibly_damaging(0.64) TCGA-ND-A4WC-01 8 21960456 21960456 C T FAM160B2 3'UTR 0.35 TCGA-ND-A4WC-01 8 21977295 21977295 C A HR Missense_Mutation p.E985D 0.09 tolerated(0.23) benign(0.15) TCGA-ND-A4WC-01 8 21982828 21982828 C A HR Silent p.R582R 0.45 TCGA-ND-A4WC-01 8 23049432 23049432 G A TNFRSF10A Silent p.I394I 0.33 TCGA-ND-A4WC-01 8 24813109 24813109 C T CTD-2168K21.2 5'Flank 0.37 TCGA-ND-A4WC-01 8 26227992 26227992 C T PPP2R2A 3'UTR 0.21 TCGA-ND-A4WC-01 8 26237612 26237612 G T BNIP3L 5'Flank 0.29 TCGA-ND-A4WC-01 8 26238477 26238477 T G BNIP3L 5'Flank 0.41 TCGA-ND-A4WC-01 8 26365965 26365965 G T PNMA2 Missense_Mutation p.L103I 0.40 tolerated(0.39) probably_damaging(0.991) TCGA-ND-A4WC-01 8 27913534 27913534 C A NUGGC Missense_Mutation p.R385I 0.44 deleterious(0) possibly_damaging(0.747) TCGA-ND-A4WC-01 8 2796122 2796122 G T CSMD1 Silent p.V3560V 0.17 TCGA-ND-A4WC-01 8 28866664 28866664 T G HMBOX1 Missense_Mutation p.F221C 0.38 deleterious(0) possibly_damaging(0.792) TCGA-ND-A4WC-01 8 30210189 30210189 T C TUBBP1 RNA 0.36 TCGA-ND-A4WC-01 8 30210772 30210772 G A TUBBP1 RNA 0.21 TCGA-ND-A4WC-01 8 30436387 30436387 G T GTF2E2 3'UTR 0.26 TCGA-ND-A4WC-01 8 30464620 30464620 T G GTF2E2 Missense_Mutation p.K199N 0.28 deleterious(0.01) possibly_damaging(0.646) TCGA-ND-A4WC-01 8 30536990 30536990 C A GSR 3'UTR 0.56 TCGA-ND-A4WC-01 8 30695032 30695032 A G TEX15 Missense_Mutation p.I2540T 0.26 tolerated(0.09) benign(0.004) TCGA-ND-A4WC-01 8 30701117 30701117 A C TEX15 Missense_Mutation p.F1806C 0.38 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 8 30701595 30701595 A C TEX15 Missense_Mutation p.F1647V 0.31 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 8 35583744 35583744 C A UNC5D Missense_Mutation p.L460M 0.10 deleterious(0.04) possibly_damaging(0.553) TCGA-ND-A4WC-01 8 36671793 36671793 T G KCNU1 Missense_Mutation p.I267M 0.40 tolerated(0.39) benign(0.018) TCGA-ND-A4WC-01 8 37635674 37635674 G A PROSC 3'UTR 0.33 TCGA-ND-A4WC-01 8 38097797 38097797 A G DDHD2 Silent p.E209E 0.33 TCGA-ND-A4WC-01 8 38257891 38257891 C T LETM2 Silent p.G202G 0.42 TCGA-ND-A4WC-01 8 39537563 39537563 C A ADAM18 Missense_Mutation p.L547I 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 8 40011374 40011374 G T C8orf4 3'UTR 0.21 TCGA-ND-A4WC-01 8 40011404 40011404 G T C8orf4 3'UTR 0.39 TCGA-ND-A4WC-01 8 41355133 41355133 T G GOLGA7 Missense_Mutation p.L73V 0.36 tolerated(0.11) possibly_damaging(0.61) TCGA-ND-A4WC-01 8 41530024 41530024 C A ANK1 Missense_Mutation p.E1689D 0.40 tolerated_low_confidence(0.36) benign(0.185) TCGA-ND-A4WC-01 8 41753901 41753901 C A ANK1 Missense_Mutation p.R33I 0.51 tolerated_low_confidence(0.06) possibly_damaging(0.857) TCGA-ND-A4WC-01 8 41906615 41906615 T G KAT6A 5'UTR 0.30 TCGA-ND-A4WC-01 8 42173742 42173742 G A IKBKB Missense_Mutation p.R272Q 0.33 tolerated(0.36) benign(0.028) TCGA-ND-A4WC-01 8 42329719 42329719 C T SLC20A2 Missense_Mutation p.A64T 0.33 deleterious(0.01) probably_damaging(1) TCGA-ND-A4WC-01 8 42611406 42611406 G T CHRNA6 Silent p.I312I 0.34 TCGA-ND-A4WC-01 8 42711377 42711377 G T RNF170 Missense_Mutation p.F234L 0.40 tolerated(0.93) benign(0.015) TCGA-ND-A4WC-01 8 48586455 48586455 C A SPIDR Missense_Mutation p.S546Y 0.31 tolerated(0.21) benign(0.313) TCGA-ND-A4WC-01 8 52287292 52287292 C T PXDNL Splice_Site p.X1186_splice 0.40 TCGA-ND-A4WC-01 8 52469436 52469436 T G PXDNL Missense_Mutation p.K115T 0.39 tolerated(0.2) possibly_damaging(0.593) TCGA-ND-A4WC-01 8 52773557 52773557 T G PCMTD1 Missense_Mutation p.K52T 0.32 deleterious(0) benign(0.324) TCGA-ND-A4WC-01 8 54791868 54791868 C T RGS20 Silent p.F72F 0.30 TCGA-ND-A4WC-01 8 55541124 55541124 A C RP1 Missense_Mutation p.K1561T 0.48 deleterious(0) probably_damaging(0.952) TCGA-ND-A4WC-01 8 55541339 55541339 G T RP1 Nonsense_Mutation p.E1633* 0.31 TCGA-ND-A4WC-01 8 55542167 55542167 A G RP1 Missense_Mutation p.K1909E 0.41 deleterious(0) possibly_damaging(0.878) TCGA-ND-A4WC-01 8 56668917 56668917 T G TMEM68 Missense_Mutation p.I127L 0.29 deleterious(0.01) benign(0.326) TCGA-ND-A4WC-01 8 56882318 56882318 T C LYN Missense_Mutation p.V339A 0.29 deleterious(0.01) possibly_damaging(0.474) TCGA-ND-A4WC-01 8 56922551 56922551 A C LYN Missense_Mutation p.D474A 0.19 tolerated(0.08) benign(0.003) TCGA-ND-A4WC-01 8 59409553 59409553 G T CYP7A1 Missense_Mutation p.S173Y 0.24 deleterious(0.01) probably_damaging(0.926) TCGA-ND-A4WC-01 8 59764207 59764207 T C TOX Missense_Mutation p.Q190R 0.31 tolerated(0.06) possibly_damaging(0.885) TCGA-ND-A4WC-01 8 61193682 61193682 C A CA8 Missense_Mutation p.D9Y 0.38 deleterious_low_confidence(0) benign(0.107) TCGA-ND-A4WC-01 8 6302632 6302632 C T MCPH1 Silent p.C463C 0.36 TCGA-ND-A4WC-01 8 63973730 63973730 T C TTPA 3'UTR 0.27 TCGA-ND-A4WC-01 8 64099024 64099024 G A YTHDF3 Missense_Mutation p.S151N 0.27 tolerated(0.35) benign(0.012) TCGA-ND-A4WC-01 8 67047346 67047346 G T TRIM55 Missense_Mutation p.D155Y 0.30 deleterious(0) probably_damaging(0.918) TCGA-ND-A4WC-01 8 67064644 67064644 G T TRIM55 Nonsense_Mutation p.E340* 0.45 TCGA-ND-A4WC-01 8 67488572 67488572 A C MYBL1 Missense_Mutation p.I380M 0.38 tolerated(0.14) benign(0.035) TCGA-ND-A4WC-01 8 67710856 67710856 A C SGK3 Missense_Mutation p.N59T 0.43 tolerated(0.29) possibly_damaging(0.671) TCGA-ND-A4WC-01 8 68111283 68111283 T C ARFGEF1 Silent p.Q1812Q 0.29 TCGA-ND-A4WC-01 8 68183948 68183948 T C ARFGEF1 Missense_Mutation p.M521V 0.28 tolerated(0.17) benign(0.042) TCGA-ND-A4WC-01 8 70512901 70512901 A G SULF1 Silent p.P266P 0.42 TCGA-ND-A4WC-01 8 70515435 70515435 A C SULF1 Missense_Mutation p.Q357P 0.33 deleterious(0.01) possibly_damaging(0.625) TCGA-ND-A4WC-01 8 71495556 71495556 G T TRAM1 Silent p.I298I 0.32 TCGA-ND-A4WC-01 8 73479882 73479882 T A KCNB2 5'UTR 0.38 TCGA-ND-A4WC-01 8 75156775 75156775 C A JPH1 Nonsense_Mutation p.E632* 0.30 TCGA-ND-A4WC-01 8 79601519 79601519 A C ZC2HC1A Missense_Mutation p.N139H 0.31 tolerated(0.06) probably_damaging(0.976) TCGA-ND-A4WC-01 8 79645886 79645886 G A IL7 3'UTR 0.46 TCGA-ND-A4WC-01 8 80992558 80992558 T C TPD52 Missense_Mutation p.Q44R 0.35 tolerated(0.29) benign(0.001) TCGA-ND-A4WC-01 8 81431737 81431737 G T ZBTB10 Nonsense_Mutation p.E864* 0.43 TCGA-ND-A4WC-01 8 85774639 85774639 C T RALYL Silent p.S187S 0.37 TCGA-ND-A4WC-01 8 86021859 86021859 T A LRRCC1 Missense_Mutation p.L45H 0.35 deleterious(0) probably_damaging(0.928) TCGA-ND-A4WC-01 8 86027431 86027431 C A LRRCC1 Nonsense_Mutation p.S214* 0.33 TCGA-ND-A4WC-01 8 87155104 87155104 A C ATP6V0D2 Splice_Site p.X188_splice 0.29 TCGA-ND-A4WC-01 8 87393822 87393822 G A WWP1 Missense_Mutation p.D100N 0.40 tolerated(0.18) probably_damaging(0.998) TCGA-ND-A4WC-01 8 87460450 87460450 T G WWP1 Missense_Mutation p.L691R 0.15 deleterious(0.01) probably_damaging(0.961) TCGA-ND-A4WC-01 8 87588271 87588271 C A CNGB3 Nonsense_Mutation p.E731* 0.33 TCGA-ND-A4WC-01 8 87656060 87656060 A C CNGB3 Missense_Mutation p.I366S 0.38 deleterious(0) possibly_damaging(0.529) TCGA-ND-A4WC-01 8 87680283 87680283 G A CNGB3 Nonsense_Mutation p.R203* 0.33 TCGA-ND-A4WC-01 8 88249206 88249206 G T CNBD1 Missense_Mutation p.V213L 0.28 tolerated(0.52) benign(0.007) TCGA-ND-A4WC-01 8 88365879 88365879 C A CNBD1 Missense_Mutation p.L390I 0.45 deleterious(0.04) probably_damaging(0.964) TCGA-ND-A4WC-01 8 8873895 8873895 A G ERI1 Missense_Mutation p.S188G 0.33 tolerated(0.37) benign(0.002) TCGA-ND-A4WC-01 8 92008023 92008023 C T TMEM55A Missense_Mutation p.R219Q 0.15 tolerated(0.61) benign(0.321) TCGA-ND-A4WC-01 8 92082634 92082634 G T OTUD6B Nonsense_Mutation p.E38* 0.36 TCGA-ND-A4WC-01 8 92083511 92083511 G T OTUD6B Missense_Mutation p.E106D 0.33 tolerated(0.7) benign(0.006) TCGA-ND-A4WC-01 8 92090712 92090712 A C OTUD6B Missense_Mutation p.E178D 0.44 deleterious(0.03) benign(0.358) TCGA-ND-A4WC-01 8 94792860 94792860 A G TMEM67 Missense_Mutation p.M252V 0.34 deleterious(0.01) benign(0.04) TCGA-ND-A4WC-01 8 95164299 95164299 G T CDH17 Missense_Mutation p.F531L 0.37 deleterious(0.03) benign(0.02) TCGA-ND-A4WC-01 8 95539304 95539304 C A KIAA1429 Missense_Mutation p.D390Y 0.34 deleterious(0.01) benign(0.329) TCGA-ND-A4WC-01 8 95653475 95653475 G C ESRP1 5'UTR 0.28 TCGA-ND-A4WC-01 8 95800138 95800138 C A DPY19L4 Nonsense_Mutation p.S622* 0.22 TCGA-ND-A4WC-01 8 95837290 95837290 G T INTS8 Missense_Mutation p.E100D 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-ND-A4WC-01 8 95884164 95884164 C T INTS8 Nonsense_Mutation p.R823* 0.33 TCGA-ND-A4WC-01 8 97978234 97978234 C A CPQ Silent p.A307A 0.29 TCGA-ND-A4WC-01 8 98288981 98288981 C A TSPYL5 Missense_Mutation p.K364N 0.33 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 8 98289208 98289208 T G TSPYL5 Silent p.R289R 0.14 TCGA-ND-A4WC-01 8 98863764 98863764 C T LAPTM4B 3'UTR 0.50 TCGA-ND-A4WC-01 8 99054311 99054311 T C RPL30 Intron 0.08 TCGA-ND-A4WC-01 8 99054352 99054352 G T RPL30 Intron 0.35 TCGA-ND-A4WC-01 8 99139912 99139912 A G POP1 Missense_Mutation p.K78E 0.35 tolerated(0.33) benign(0.015) TCGA-ND-A4WC-01 8 99142362 99142362 G A POP1 Missense_Mutation p.V215I 0.35 deleterious(0.05) benign(0.311) TCGA-ND-A4WC-01 8 99440676 99440676 G T KCNS2 Missense_Mutation p.D157Y 0.47 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 9 100418013 100418013 G A NCBP1 Missense_Mutation p.S422N 0.17 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 9 100961799 100961799 A G TBC1D2 Missense_Mutation p.V873A 0.33 tolerated(0.66) benign(0.001) TCGA-ND-A4WC-01 9 101340240 101340240 G T GABBR2 Missense_Mutation p.L146I 0.32 tolerated(0.45) probably_damaging(0.997) TCGA-ND-A4WC-01 9 101585576 101585576 G T GALNT12 Missense_Mutation p.R137M 0.33 deleterious(0) benign(0.336) TCGA-ND-A4WC-01 9 101589141 101589141 T C GALNT12 Missense_Mutation p.S217P 0.41 deleterious(0) probably_damaging(0.962) TCGA-ND-A4WC-01 9 101594117 101594117 C T GALNT12 Silent p.F265F 0.49 TCGA-ND-A4WC-01 9 102731097 102731097 G A STX17 3'UTR 0.44 TCGA-ND-A4WC-01 9 104032271 104032271 C A LPPR1 Missense_Mutation p.P58H 0.16 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 9 104171636 104171636 G A ZNF189 Missense_Mutation p.R529Q 0.22 tolerated(0.84) possibly_damaging(0.635) TCGA-ND-A4WC-01 9 104316369 104316369 G A RNF20 Silent p.E667E 0.31 TCGA-ND-A4WC-01 9 104316985 104316985 C A RNF20 Missense_Mutation p.L677I 0.29 tolerated(0.08) benign(0.168) TCGA-ND-A4WC-01 9 104357195 104357195 G A PPP3R2 Silent p.N6N 0.39 TCGA-ND-A4WC-01 9 1056315 1056315 A C DMRT2 Missense_Mutation p.K243T 0.33 deleterious(0.01) probably_damaging(0.941) TCGA-ND-A4WC-01 9 107289097 107289097 A C OR13C4 Missense_Mutation p.Y132D 0.16 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 9 107548664 107548664 C A ABCA1 Nonsense_Mutation p.E2106* 0.32 TCGA-ND-A4WC-01 9 107595031 107595031 T C ABCA1 Missense_Mutation p.N445D 0.26 tolerated(0.46) benign(0.013) TCGA-ND-A4WC-01 9 107620980 107620980 C A ABCA1 Splice_Site p.X182_splice 0.39 TCGA-ND-A4WC-01 9 108126842 108126842 C A SLC44A1 Missense_Mutation p.P365H 0.36 deleterious(0.01) probably_damaging(0.933) TCGA-ND-A4WC-01 9 111782679 111782679 C T TMEM245 3'UTR 0.25 TCGA-ND-A4WC-01 9 113013138 113013138 T C TXN Missense_Mutation p.N51D 0.15 tolerated(0.85) benign(0.005) TCGA-ND-A4WC-01 9 113205783 113205783 T G SVEP1 Intron 0.43 TCGA-ND-A4WC-01 9 113275275 113275275 G T SVEP1 Missense_Mutation p.L412I 0.31 probably_damaging(0.999) TCGA-ND-A4WC-01 9 114355205 114355205 C A PTGR1 Splice_Site p.X70_splice 0.21 TCGA-ND-A4WC-01 9 114864560 114864560 C A SUSD1 Missense_Mutation p.D393Y 0.33 deleterious(0) possibly_damaging(0.771) TCGA-ND-A4WC-01 9 115216318 115216318 G T HSDL2 Missense_Mutation p.E297D 0.32 tolerated(0.42) benign(0.084) TCGA-ND-A4WC-01 9 115652731 115652731 G T SLC46A2 Missense_Mutation p.F77L 0.07 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 9 115805272 115805272 C A ZFP37 Missense_Mutation p.E542D 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-ND-A4WC-01 9 116187312 116187312 G A C9orf43 Missense_Mutation p.R274Q 0.44 deleterious(0.04) benign(0.286) TCGA-ND-A4WC-01 9 116187673 116187673 G A C9orf43 Silent p.K305K 0.26 TCGA-ND-A4WC-01 9 116346160 116346160 C T RGS3 Missense_Mutation p.S823F 0.32 deleterious_low_confidence(0.03) benign(0.002) TCGA-ND-A4WC-01 9 117027726 117027726 C A COL27A1 Missense_Mutation p.P1122T 0.10 probably_damaging(0.975) TCGA-ND-A4WC-01 9 117845063 117845063 T C TNC Missense_Mutation p.K719E 0.39 deleterious(0.01) benign(0.297) TCGA-ND-A4WC-01 9 118969875 118969875 A G PAPPA Missense_Mutation p.H540R 0.24 deleterious(0.01) possibly_damaging(0.537) TCGA-ND-A4WC-01 9 119158918 119158918 G T PAPPA 3'UTR 0.28 TCGA-ND-A4WC-01 9 120475079 120475079 G T TLR4 Nonsense_Mutation p.E225* 0.20 TCGA-ND-A4WC-01 9 123201969 123201969 T G CDK5RAP2 Missense_Mutation p.I1144L 0.48 tolerated(0.25) possibly_damaging(0.651) TCGA-ND-A4WC-01 9 123367548 123367548 A C MEGF9 Missense_Mutation p.L577V 0.36 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 9 123620323 123620323 G A PHF19 Missense_Mutation p.R548W 0.45 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 9 124062336 124062336 C A GSN Intron 0.30 TCGA-ND-A4WC-01 9 125239745 125239745 G A OR1J1 Missense_Mutation p.A154V 0.39 tolerated_low_confidence(0.22) benign(0.032) TCGA-ND-A4WC-01 9 125486805 125486805 C A OR1L4 Missense_Mutation p.F179L 0.24 tolerated(0.12) probably_damaging(0.997) TCGA-ND-A4WC-01 9 125551852 125551852 C T OR5C1 Missense_Mutation p.T214M 0.36 deleterious(0.02) probably_damaging(1) TCGA-ND-A4WC-01 9 125585323 125585323 T C PDCL Missense_Mutation p.K109R 0.39 tolerated(0.22) probably_damaging(0.97) TCGA-ND-A4WC-01 9 125682120 125682120 A C ZBTB26 Missense_Mutation p.F32V 0.40 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 9 125865615 125865615 G A RABGAP1 3'UTR 0.36 TCGA-ND-A4WC-01 9 127302467 127302467 C A NR6A1 Splice_Site p.X148_splice 0.34 TCGA-ND-A4WC-01 9 128692040 128692040 G A PBX3 Missense_Mutation p.R208Q 0.09 tolerated(0.08) probably_damaging(0.971) TCGA-ND-A4WC-01 9 129453169 129453169 C T LMX1B Silent p.F127F 0.40 TCGA-ND-A4WC-01 9 131302553 131302553 G T GLE1 Splice_Site p.X655_splice 0.24 TCGA-ND-A4WC-01 9 131939486 131939486 G A IER5L Silent p.C282C 0.25 TCGA-ND-A4WC-01 9 133748273 133748273 T C ABL1 Missense_Mutation p.Y331H 0.20 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 9 133787197 133787197 T C FIBCD1 Missense_Mutation p.T310A 0.33 tolerated(0.12) possibly_damaging(0.595) TCGA-ND-A4WC-01 9 133928021 133928021 T C LAMC3 Missense_Mutation p.S592P 0.20 tolerated(0.37) benign(0.006) TCGA-ND-A4WC-01 9 135277008 135277008 G A TTF1 Nonsense_Mutation p.R401* 0.28 TCGA-ND-A4WC-01 9 135796771 135796771 T C TSC1 Missense_Mutation p.D239G 0.41 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 9 135983592 135983592 G A RALGDS Missense_Mutation p.S327L 0.51 tolerated(0.35) unknown(0) TCGA-ND-A4WC-01 9 136135231 136135238 CGAGACAT TGAGACGC RP11-430N14.4 5'Flank 0.10 TCGA-ND-A4WC-01 9 136268898 136268898 G T C9orf96 Missense_Mutation p.D517Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 9 136507486 136507486 A C DBH Missense_Mutation p.E215A 0.36 tolerated(0.09) possibly_damaging(0.626) TCGA-ND-A4WC-01 9 138440590 138440590 A C OBP2A Missense_Mutation p.E142A 0.32 tolerated(0.1) benign(0.379) TCGA-ND-A4WC-01 9 138556129 138556129 T C LCN9 Missense_Mutation p.F73S 0.41 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 9 138656879 138656879 C T KCNT1 Silent p.F346F 0.37 TCGA-ND-A4WC-01 9 138709842 138709842 C T CAMSAP1 Missense_Mutation p.G1418R 0.40 deleterious(0) possibly_damaging(0.474) TCGA-ND-A4WC-01 9 138742171 138742171 C A CAMSAP1 Missense_Mutation p.L315F 0.39 deleterious(0) probably_damaging(0.988) TCGA-ND-A4WC-01 9 140082342 140082342 G A ANAPC2 Missense_Mutation p.L111F 0.29 tolerated(0.17) benign(0.064) TCGA-ND-A4WC-01 9 140093883 140093883 C T TPRN Silent p.S427S 0.28 TCGA-ND-A4WC-01 9 140354851 140354851 G A PNPLA7 Silent p.D1341D 0.19 TCGA-ND-A4WC-01 9 140400121 140400121 G A PNPLA7 Missense_Mutation p.S473L 0.35 tolerated(0.18) benign(0.005) TCGA-ND-A4WC-01 9 140646849 140646849 G A EHMT1 Missense_Mutation p.E413K 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-ND-A4WC-01 9 140851266 140851266 G A CACNA1B Silent p.K410K 0.36 TCGA-ND-A4WC-01 9 141008837 141008837 G T CACNA1B Missense_Mutation p.E1848D 0.50 tolerated(1) benign(0.418) TCGA-ND-A4WC-01 9 14748461 14748461 G A FREM1 Missense_Mutation p.R1912W 0.34 tolerated(0.07) benign(0) TCGA-ND-A4WC-01 9 14804984 14804984 T G FREM1 Missense_Mutation p.E1147D 0.40 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 9 15267934 15267934 C A TTC39B Missense_Mutation p.D85Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-ND-A4WC-01 9 15453106 15453106 G T SNAPC3 Missense_Mutation p.D295Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 9 18639251 18639251 G T ADAMTSL1 Splice_Site p.X226_splice 0.53 TCGA-ND-A4WC-01 9 18950823 18950823 C A FAM154A Nonsense_Mutation p.E51* 0.39 TCGA-ND-A4WC-01 9 19093207 19093207 C A HAUS6 Missense_Mutation p.R133I 0.36 deleterious(0) possibly_damaging(0.506) TCGA-ND-A4WC-01 9 19296187 19296187 T G DENND4C Missense_Mutation p.F328C 0.33 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 9 19346945 19346945 C A DENND4C Missense_Mutation p.S1344Y 0.24 deleterious(0) probably_damaging(0.978) TCGA-ND-A4WC-01 9 19450716 19450716 C T ACER2 3'UTR 0.31 TCGA-ND-A4WC-01 9 19576994 19576994 G T SLC24A2 Missense_Mutation p.L386I 0.41 tolerated(0.06) benign(0.04) TCGA-ND-A4WC-01 9 20414132 20414132 C A MLLT3 Nonsense_Mutation p.E238* 0.34 TCGA-ND-A4WC-01 9 20740310 20740310 A C FOCAD Missense_Mutation p.E121D 0.33 tolerated(0.76) benign(0.002) TCGA-ND-A4WC-01 9 21201822 21201822 G A IFNA7 Nonsense_Mutation p.Q115* 0.35 TCGA-ND-A4WC-01 9 21334077 21334077 C T KLHL9 Missense_Mutation p.R261K 0.30 tolerated(0.65) benign(0.134) TCGA-ND-A4WC-01 9 21384820 21384820 A C IFNA2 Missense_Mutation p.I170S 0.35 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 9 21384886 21384886 C A IFNA2 Missense_Mutation p.R148I 0.35 deleterious(0.02) probably_damaging(0.961) TCGA-ND-A4WC-01 9 21815500 21815500 G A MTAP Silent p.V34V 0.34 TCGA-ND-A4WC-01 9 2191349 2191349 C T SMARCA2 Nonsense_Mutation p.R1560* 0.37 TCGA-ND-A4WC-01 9 21974699 21974699 C A CDKN2A Missense_Mutation p.S43I 0.11 tolerated(0.07) benign(0.357) TCGA-ND-A4WC-01 9 27202911 27202911 C A TEK Missense_Mutation p.S668Y 0.33 deleterious(0.01) benign(0.112) TCGA-ND-A4WC-01 9 2831329 2831329 C T KIAA0020 Missense_Mutation p.D178N 0.29 deleterious(0.01) probably_damaging(0.92) TCGA-ND-A4WC-01 9 32633900 32633900 G T TAF1L Missense_Mutation p.L560I 0.06 tolerated(0.27) possibly_damaging(0.474) TCGA-ND-A4WC-01 9 33385004 33385004 T C AQP7 Silent p.%3D 0.05 TCGA-ND-A4WC-01 9 34088497 34088497 C A DCAF12 Nonsense_Mutation p.E405* 0.34 TCGA-ND-A4WC-01 9 34250704 34250704 G A UBAP1 Missense_Mutation p.D503N 0.30 deleterious(0.01) possibly_damaging(0.519) TCGA-ND-A4WC-01 9 34381456 34381456 A G C9orf24 Intron 0.41 TCGA-ND-A4WC-01 9 34637346 34637346 G A SIGMAR1 Missense_Mutation p.P75S 0.38 deleterious(0.03) possibly_damaging(0.904) TCGA-ND-A4WC-01 9 35044595 35044595 G A C9orf131 Missense_Mutation p.V657I 0.34 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 9 35060826 35060826 A G VCP Missense_Mutation p.V485A 0.28 tolerated(0.06) possibly_damaging(0.555) TCGA-ND-A4WC-01 9 35079490 35079490 C T FANCG Missense_Mutation p.S11N 0.34 tolerated(0.14) benign(0.015) TCGA-ND-A4WC-01 9 35807134 35807134 C T NPR2 Silent p.T878T 0.23 TCGA-ND-A4WC-01 9 35808096 35808096 A C SPAG8 3'UTR 0.32 TCGA-ND-A4WC-01 9 35869824 35869824 G A OR13J1 Missense_Mutation p.T192M 0.34 deleterious(0.01) benign(0.168) TCGA-ND-A4WC-01 9 36169834 36169834 A G CCIN Missense_Mutation p.N112S 0.34 tolerated(0.55) benign(0.038) TCGA-ND-A4WC-01 9 37588877 37588877 A G TOMM5 3'UTR 0.26 TCGA-ND-A4WC-01 9 37737115 37737115 C T FRMPD1 Missense_Mutation p.S475F 0.34 deleterious(0) probably_damaging(0.966) TCGA-ND-A4WC-01 9 37745053 37745053 T C FRMPD1 Silent p.H1008H 0.18 TCGA-ND-A4WC-01 9 39140537 39140537 G T CNTNAP3 Missense_Mutation p.L619I 0.33 tolerated(0.18) benign(0.311) TCGA-ND-A4WC-01 9 40772234 40772234 C A ZNF658 Missense_Mutation p.R1014I 0.30 deleterious(0) probably_damaging(0.948) TCGA-ND-A4WC-01 9 40774078 40774078 G T ZNF658 Silent p.L399L 0.16 TCGA-ND-A4WC-01 9 4118581 4118581 C A GLIS3 Missense_Mutation p.K299N 0.41 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 9 464250 464250 G T DOCK8 3'UTR 0.35 TCGA-ND-A4WC-01 9 5066779 5066779 T C JAK2 Missense_Mutation p.F439S 0.41 deleterious(0) probably_damaging(0.979) TCGA-ND-A4WC-01 9 5078340 5078340 C T JAK2 Missense_Mutation p.A676V 0.32 deleterious(0.01) possibly_damaging(0.582) TCGA-ND-A4WC-01 9 5570031 5570031 C T PDCD1LG2 3'UTR 0.32 TCGA-ND-A4WC-01 9 5757341 5757341 C A KIAA1432 Missense_Mutation p.L628I 0.30 tolerated(0.37) possibly_damaging(0.859) TCGA-ND-A4WC-01 9 5805106 5805106 C A ERMP1 Missense_Mutation p.R612I 0.15 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 9 5810024 5810024 C A ERMP1 Missense_Mutation p.R512I 0.12 deleterious(0.02) benign(0.058) TCGA-ND-A4WC-01 9 5811254 5811254 C T ERMP1 Missense_Mutation p.R395Q 0.22 tolerated(0.12) benign(0.002) TCGA-ND-A4WC-01 9 5922560 5922560 T G KIAA2026 Missense_Mutation p.N1146H 0.20 deleterious(0.01) benign(0.366) TCGA-ND-A4WC-01 9 6014728 6014728 A C RANBP6 Missense_Mutation p.L294V 0.29 deleterious(0) probably_damaging(0.967) TCGA-ND-A4WC-01 9 6015322 6015322 C T RANBP6 Missense_Mutation p.D96N 0.31 tolerated(0.46) benign(0.001) TCGA-ND-A4WC-01 9 6331155 6331155 G T TPD52L3 3'Flank 0.40 TCGA-ND-A4WC-01 9 6980999 6980999 G A KDM4C Silent p.Q332Q 0.31 TCGA-ND-A4WC-01 9 71491678 71491678 G T PIP5K1B Nonsense_Mutation p.E96* 0.18 TCGA-ND-A4WC-01 9 71687697 71687697 G T FXN 3'UTR 0.15 TCGA-ND-A4WC-01 9 732715 732715 C A KANK1 Intron 0.50 TCGA-ND-A4WC-01 9 74817652 74817652 A G GDA Silent p.R126R 0.09 TCGA-ND-A4WC-01 9 75445593 75445593 G A TMC1 Missense_Mutation p.R752Q 0.33 deleterious(0.05) unknown(0) TCGA-ND-A4WC-01 9 75545819 75545819 G A ALDH1A1 Silent p.I96I 0.35 TCGA-ND-A4WC-01 9 77275552 77275552 C A RORB Silent p.I219I 0.35 TCGA-ND-A4WC-01 9 78506027 78506027 G A PCSK5 5'UTR 0.44 TCGA-ND-A4WC-01 9 79318459 79318459 T G PRUNE2 Missense_Mutation p.E2690D 0.41 deleterious(0.01) benign(0.16) TCGA-ND-A4WC-01 9 79324748 79324748 A C PRUNE2 Missense_Mutation p.N814K 0.31 tolerated(0.13) benign(0.009) TCGA-ND-A4WC-01 9 79520871 79520871 T C PRUNE2 Silent p.E3E 0.40 TCGA-ND-A4WC-01 9 82191078 82191078 G T TLE4 Nonsense_Mutation p.E80* 0.37 TCGA-ND-A4WC-01 9 8404577 8404577 G A PTPRD Silent p.I1390I 0.36 TCGA-ND-A4WC-01 9 84532492 84532492 A C SPATA31D5P RNA 0.13 TCGA-ND-A4WC-01 9 85611950 85611950 G A RASEF Nonsense_Mutation p.R633* 0.31 TCGA-ND-A4WC-01 9 86465162 86465162 T G KIF27 Missense_Mutation p.E1136D 0.23 deleterious(0.01) benign(0.102) TCGA-ND-A4WC-01 9 88590040 88590040 G T NAA35 Missense_Mutation p.D199Y 0.32 deleterious(0) possibly_damaging(0.862) TCGA-ND-A4WC-01 9 88955947 88955947 A C ZCCHC6 Missense_Mutation p.L370V 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-ND-A4WC-01 9 89771500 89771500 C T C9orf170 Missense_Mutation p.R61W 0.43 tolerated_low_confidence(0.57) benign(0) TCGA-ND-A4WC-01 9 90535331 90535331 G A SPATA31C1 RNA 0.36 TCGA-ND-A4WC-01 9 91090060 91090060 A C SPIN1 Missense_Mutation p.E219D 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-ND-A4WC-01 9 94171927 94171927 C T NFIL3 Missense_Mutation p.E364K 0.36 tolerated(0.06) benign(0.342) TCGA-ND-A4WC-01 9 94172299 94172299 T C NFIL3 Missense_Mutation p.T240A 0.30 tolerated(0.83) benign(0.001) TCGA-ND-A4WC-01 9 94874756 94874756 C T SPTLC1 Missense_Mutation p.R49Q 0.23 tolerated(0.11) benign(0.408) TCGA-ND-A4WC-01 9 95237107 95237107 C T ASPN Missense_Mutation p.A25T 0.42 tolerated(0.57) benign(0.001) TCGA-ND-A4WC-01 9 95608521 95608521 A G ZNF484 Missense_Mutation p.S852P 0.35 tolerated(0.1) benign(0.068) TCGA-ND-A4WC-01 9 95840161 95840161 T C SUSD3 Missense_Mutation p.V104A 0.29 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 9 98244436 98244436 C A PTCH1 Nonsense_Mutation p.E212* 0.39 TCGA-ND-A4WC-01 9 98684594 98684594 C A ERCC6L2 Missense_Mutation p.S447Y 0.50 deleterious(0.01) possibly_damaging(0.866) TCGA-ND-A4WC-01 9 99521061 99521061 C T ZNF510 Silent p.%3D 0.19 TCGA-ND-A4WC-01 9 99580183 99580183 C T ZNF782 3'UTR 0.46 TCGA-ND-A4WC-01 9 99797041 99797041 G A CTSV Missense_Mutation p.S291L 0.38 tolerated(0.07) benign(0.02) TCGA-ND-A4WC-01 X 100088308 100088308 G A CSTF2 Silent p.A449A 0.33 TCGA-ND-A4WC-01 X 100099015 100099015 G A NOX1 Missense_Mutation p.R541C 0.39 tolerated(0.06) benign(0.013) TCGA-ND-A4WC-01 X 100169326 100169326 A C XKRX 3'UTR 0.40 TCGA-ND-A4WC-01 X 100183298 100183298 G A XKRX 5'UTR 0.32 TCGA-ND-A4WC-01 X 100387279 100387279 C A CENPI Missense_Mutation p.P463H 0.36 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 X 100500053 100500053 C T DRP2 Missense_Mutation p.P368S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-ND-A4WC-01 X 100530220 100530220 T A TAF7L Missense_Mutation p.K445I 0.39 deleterious(0) probably_damaging(0.919) TCGA-ND-A4WC-01 X 100532613 100532613 C T TAF7L Silent p.K310K 0.29 TCGA-ND-A4WC-01 X 100653892 100653892 T G GLA Missense_Mutation p.N228H 0.43 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 X 101139144 101139144 C A ZMAT1 Missense_Mutation p.D419Y 0.07 deleterious(0) possibly_damaging(0.595) TCGA-ND-A4WC-01 X 101139766 101139766 C A ZMAT1 Missense_Mutation p.K211N 0.32 deleterious(0.03) probably_damaging(0.986) TCGA-ND-A4WC-01 X 101623766 101623766 G T NXF2B Missense_Mutation p.S199Y 0.19 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 X 10174814 10174814 G T CLCN4 Nonsense_Mutation p.E281* 0.34 TCGA-ND-A4WC-01 X 101911592 101911592 C A GPRASP1 Silent p.V917V 0.26 TCGA-ND-A4WC-01 X 101912218 101912218 G A GPRASP1 Missense_Mutation p.R1126Q 0.41 deleterious(0.03) benign(0.406) TCGA-ND-A4WC-01 X 101970234 101970234 C T GPRASP2 Missense_Mutation p.S146F 0.37 tolerated(0.13) benign(0.002) TCGA-ND-A4WC-01 X 102005204 102005204 G T BHLHB9 Missense_Mutation p.K427N 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-ND-A4WC-01 X 102471471 102471471 T C BEX4 3'UTR 0.47 TCGA-ND-A4WC-01 X 102529347 102529347 C A TCEAL5 Nonsense_Mutation p.E49* 0.39 TCGA-ND-A4WC-01 X 102564343 102564343 C A BEX2 3'UTR 0.56 TCGA-ND-A4WC-01 X 102564538 102564538 C A BEX2 Nonsense_Mutation p.E155* 0.40 TCGA-ND-A4WC-01 X 102931709 102931709 G T MORF4L2 Missense_Mutation p.P83T 0.35 deleterious(0.01) benign(0.311) TCGA-ND-A4WC-01 X 102968693 102968693 G A TMEM31 Missense_Mutation p.E92K 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-ND-A4WC-01 X 103040584 103040584 C A PLP1 Missense_Mutation p.F26L 0.35 tolerated(0.06) probably_damaging(0.992) TCGA-ND-A4WC-01 X 103040636 103040636 G A PLP1 Missense_Mutation p.E44K 0.32 tolerated(0.28) possibly_damaging(0.78) TCGA-ND-A4WC-01 X 103040659 103040659 C A PLP1 Missense_Mutation p.F51L 0.35 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 X 103080753 103080753 G T RAB9B 5'UTR 0.29 TCGA-ND-A4WC-01 X 103294803 103294803 C T H2BFM Missense_Mutation p.S87F 0.22 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 X 103411476 103411476 G A FAM199X Missense_Mutation p.E4K 0.40 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-ND-A4WC-01 X 104478596 104478596 A C IL1RAPL2 Missense_Mutation p.K151Q 0.34 tolerated(0.15) probably_damaging(0.994) TCGA-ND-A4WC-01 X 10491182 10491182 C A MID1 Nonsense_Mutation p.E236* 0.42 TCGA-ND-A4WC-01 X 105179175 105179175 C T NRK Silent p.F1172F 0.28 TCGA-ND-A4WC-01 X 105187975 105187975 C A NRK Nonsense_Mutation p.S1335* 0.33 TCGA-ND-A4WC-01 X 105190310 105190310 T G NRK Missense_Mutation p.F1404V 0.20 deleterious(0) benign(0.164) TCGA-ND-A4WC-01 X 105280576 105280576 G T SERPINA7 Silent p.V158V 0.37 TCGA-ND-A4WC-01 X 105451046 105451046 C A MUM1L1 Missense_Mutation p.L541I 0.41 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 X 105876450 105876450 C T CXorf57 Missense_Mutation p.S424L 0.32 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 X 106038844 106038844 T G RNF128 Missense_Mutation p.N396K 0.12 tolerated(0.26) benign(0.015) TCGA-ND-A4WC-01 X 106083350 106083350 C T TBC1D8B Nonsense_Mutation p.R476* 0.33 TCGA-ND-A4WC-01 X 106093368 106093368 C A TBC1D8B Missense_Mutation p.L651I 0.38 deleterious(0) probably_damaging(0.994) TCGA-ND-A4WC-01 X 106116961 106116961 C A TBC1D8B Missense_Mutation p.F1043L 0.30 tolerated(0.74) benign(0) TCGA-ND-A4WC-01 X 106146382 106146382 C A RIPPLY1 Nonsense_Mutation p.E46* 0.32 TCGA-ND-A4WC-01 X 106146519 106146519 C A RIPPLY1 5'UTR 0.38 TCGA-ND-A4WC-01 X 106396734 106396734 C A NUP62CL Splice_Site p.X116_splice 0.40 TCGA-ND-A4WC-01 X 106843539 106843539 T G FRMPD3 Missense_Mutation p.I790S 0.28 deleterious(0.01) benign(0.434) TCGA-ND-A4WC-01 X 107018442 107018442 G A TSC22D3 Missense_Mutation p.R70W 0.41 deleterious(0) probably_damaging(0.977) TCGA-ND-A4WC-01 X 107169924 107169924 A G MID2 Missense_Mutation p.K610R 0.42 tolerated(0.35) possibly_damaging(0.705) TCGA-ND-A4WC-01 X 107320665 107320665 G A VSIG1 3'UTR 0.28 TCGA-ND-A4WC-01 X 107420147 107420147 A G COL4A6 Silent p.N871N 0.38 TCGA-ND-A4WC-01 X 107863490 107863490 T C COL4A5 Silent p.G837G 0.31 TCGA-ND-A4WC-01 X 107869523 107869523 G A COL4A5 Missense_Mutation p.D1064N 0.29 unknown(0) TCGA-ND-A4WC-01 X 107936062 107936062 G T COL4A5 Missense_Mutation p.R1538I 0.38 probably_damaging(1) TCGA-ND-A4WC-01 X 108902619 108902619 C A ACSL4 Nonsense_Mutation p.E648* 0.26 TCGA-ND-A4WC-01 X 108926385 108926385 T G ACSL4 Missense_Mutation p.N111H 0.16 deleterious(0) possibly_damaging(0.726) TCGA-ND-A4WC-01 X 109414704 109414704 C A TMEM164 Missense_Mutation p.L215I 0.08 tolerated(0.55) benign(0.034) TCGA-ND-A4WC-01 X 109694334 109694334 G A RGAG1 Silent p.E163E 0.09 TCGA-ND-A4WC-01 X 109919420 109919420 G A CHRDL1 3'UTR 0.37 TCGA-ND-A4WC-01 X 110489795 110489795 G A CAPN6 3'UTR 0.40 TCGA-ND-A4WC-01 X 110496278 110496278 A G CAPN6 Missense_Mutation p.M155T 0.38 tolerated(0.44) possibly_damaging(0.537) TCGA-ND-A4WC-01 X 110978304 110978304 C A ALG13 Missense_Mutation p.S828Y 0.35 deleterious(0) possibly_damaging(0.726) TCGA-ND-A4WC-01 X 111003114 111003114 G T ALG13 Missense_Mutation p.V1101F 0.38 deleterious(0.01) possibly_damaging(0.486) TCGA-ND-A4WC-01 X 111019504 111019504 T C TRPC5 3'UTR 0.28 TCGA-ND-A4WC-01 X 111019750 111019750 C A TRPC5 Nonsense_Mutation p.E905* 0.11 TCGA-ND-A4WC-01 X 111019917 111019917 A T TRPC5 Missense_Mutation p.F849Y 0.38 tolerated_low_confidence(0.45) possibly_damaging(0.878) TCGA-ND-A4WC-01 X 111078180 111078180 G T TRPC5 Missense_Mutation p.A622D 0.33 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 X 11139034 11139034 C T HCCS Missense_Mutation p.P177S 0.19 tolerated(0.07) benign(0.261) TCGA-ND-A4WC-01 X 11162029 11162029 A G ARHGAP6 Intron 0.33 TCGA-ND-A4WC-01 X 111874817 111874817 A C LHFPL1 Missense_Mutation p.L165R 0.25 deleterious(0) possibly_damaging(0.845) TCGA-ND-A4WC-01 X 11187706 11187706 C A ARHGAP6 Missense_Mutation p.Q576H 0.21 deleterious(0.02) probably_damaging(0.912) TCGA-ND-A4WC-01 X 112022529 112022529 G A AMOT Silent p.A951A 0.20 TCGA-ND-A4WC-01 X 115574871 115574871 A C SLC6A14 Missense_Mutation p.K190T 0.19 tolerated(0.65) benign(0.01) TCGA-ND-A4WC-01 X 115590115 115590115 G T SLC6A14 Silent p.P641P 0.34 TCGA-ND-A4WC-01 X 115594044 115594044 C A CT83 5'UTR 0.27 TCGA-ND-A4WC-01 X 11682852 11682852 G A ARHGAP6 Missense_Mutation p.R33C 0.33 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-ND-A4WC-01 X 117043459 117043459 G T KLHL13 Missense_Mutation p.L394I 0.35 deleterious(0.01) probably_damaging(0.919) TCGA-ND-A4WC-01 X 117527097 117527097 A C WDR44 Missense_Mutation p.K230T 0.35 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-ND-A4WC-01 X 117817047 117817047 T G DOCK11 Missense_Mutation p.F1990C 0.42 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WC-01 X 117875003 117875003 T G IL13RA1 Missense_Mutation p.L38V 0.39 tolerated(0.18) benign(0.26) TCGA-ND-A4WC-01 X 118603829 118603829 G T SLC25A5 Missense_Mutation p.R106I 0.26 deleterious(0.01) benign(0.372) TCGA-ND-A4WC-01 X 118724345 118724345 T C NKRF Missense_Mutation p.D363G 0.21 deleterious(0.05) possibly_damaging(0.62) TCGA-ND-A4WC-01 X 118724928 118724928 G T NKRF Missense_Mutation p.P169T 0.28 tolerated(0.63) benign(0.006) TCGA-ND-A4WC-01 X 118763353 118763353 G A SEPT6 Missense_Mutation p.A403V 0.35 tolerated(0.51) benign(0.171) TCGA-ND-A4WC-01 X 118979216 118979216 T A UPF3B Missense_Mutation p.K138N 0.40 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 119070327 119070327 C T NKAP Silent p.S202S 0.20 TCGA-ND-A4WC-01 X 119565153 119565153 T G LAMP2 Intron 0.32 TCGA-ND-A4WC-01 X 119565273 119565273 C T LAMP2 Intron 0.31 TCGA-ND-A4WC-01 X 119670796 119670796 G T CUL4B Missense_Mutation p.H696N 0.38 tolerated(0.74) benign(0) TCGA-ND-A4WC-01 X 119760025 119760025 G A C1GALT1C1 3'UTR 0.39 TCGA-ND-A4WC-01 X 119760240 119760240 T C C1GALT1C1 Missense_Mutation p.Y261C 0.29 deleterious(0.03) benign(0.03) TCGA-ND-A4WC-01 X 122460031 122460031 C T GRIA3 Silent p.C221C 0.41 TCGA-ND-A4WC-01 X 122460038 122460038 G A GRIA3 Missense_Mutation p.E224K 0.10 tolerated(0.11) benign(0.397) TCGA-ND-A4WC-01 X 122561805 122561805 C T GRIA3 Missense_Mutation p.R631C 0.10 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 123019607 123019607 C A XIAP Missense_Mutation p.T32N 0.36 deleterious(0) possibly_damaging(0.794) TCGA-ND-A4WC-01 X 123185195 123185195 G T STAG2 Nonsense_Mutation p.E383* 0.21 TCGA-ND-A4WC-01 X 123519848 123519848 G T TENM1 Missense_Mutation p.L1919I 0.14 tolerated(0.33) benign(0.028) TCGA-ND-A4WC-01 X 123554640 123554640 C A TENM1 Missense_Mutation p.M1501I 0.44 deleterious(0.01) benign(0.002) TCGA-ND-A4WC-01 X 124097442 124097442 C A TENM1 Missense_Mutation p.R54M 0.40 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-ND-A4WC-01 X 127185898 127185898 C T ACTRT1 Silent p.E96E 0.37 TCGA-ND-A4WC-01 X 127186273 127186273 T G ACTRT1 5'UTR 0.56 TCGA-ND-A4WC-01 X 128599822 128599822 T G SMARCA1 Missense_Mutation p.K939T 0.12 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 128657270 128657270 G A SMARCA1 Silent p.D26D 0.13 TCGA-ND-A4WC-01 X 128696430 128696430 C T OCRL Missense_Mutation p.R337C 0.33 tolerated(0.05) benign(0.013) TCGA-ND-A4WC-01 X 128710410 128710410 G T OCRL Missense_Mutation p.D666Y 0.09 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 128873004 128873004 G T XPNPEP2 5'UTR 0.36 TCGA-ND-A4WC-01 X 128902444 128902444 C A XPNPEP2 Missense_Mutation p.L670I 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.493) TCGA-ND-A4WC-01 X 129053155 129053155 G T UTP14A Missense_Mutation p.R181I 0.36 deleterious(0) possibly_damaging(0.817) TCGA-ND-A4WC-01 X 129147295 129147295 G T BCORL1 Missense_Mutation p.V183F 0.09 unknown(0) TCGA-ND-A4WC-01 X 129148945 129148945 G T BCORL1 Missense_Mutation p.D733Y 0.34 probably_damaging(0.982) TCGA-ND-A4WC-01 X 129150157 129150157 A G BCORL1 Missense_Mutation p.K1137E 0.20 benign(0.214) TCGA-ND-A4WC-01 X 12938499 12938499 T C TLR8 Missense_Mutation p.F447S 0.71 tolerated(0.28) benign(0.005) TCGA-ND-A4WC-01 X 129499437 129499437 G T SLC25A14 Intron 0.21 TCGA-ND-A4WC-01 X 129629094 129629094 G T RP1-274L7.1 Intron 0.36 TCGA-ND-A4WC-01 X 129768979 129768979 C A ENOX2 Missense_Mutation p.M495I 0.30 tolerated(0.47) benign(0.009) TCGA-ND-A4WC-01 X 129843233 129843233 G A ENOX2 Silent p.Y11Y 0.41 TCGA-ND-A4WC-01 X 130412665 130412665 G A IGSF1 Missense_Mutation p.P609L 0.30 deleterious(0.03) probably_damaging(1) TCGA-ND-A4WC-01 X 130417108 130417108 C A IGSF1 Missense_Mutation p.E266D 0.32 tolerated(0.35) benign(0.015) TCGA-ND-A4WC-01 X 130678387 130678387 C A OR13H1 Missense_Mutation p.L114I 0.31 deleterious(0) probably_damaging(0.976) TCGA-ND-A4WC-01 X 132091120 132091120 G A HS6ST2 Silent p.F221F 0.38 TCGA-ND-A4WC-01 X 132350989 132350989 G A TFDP3 3'UTR 0.24 TCGA-ND-A4WC-01 X 132437257 132437257 G A GPC4 Nonsense_Mutation p.R469* 0.31 TCGA-ND-A4WC-01 X 13337045 13337045 C T ATXN3L Missense_Mutation p.A337T 0.49 tolerated_low_confidence(0.16) benign(0.004) TCGA-ND-A4WC-01 X 13337601 13337601 G T ATXN3L Missense_Mutation p.F151L 0.46 tolerated(0.06) benign(0.189) TCGA-ND-A4WC-01 X 133527538 133527538 C A PHF6 Missense_Mutation p.S83Y 0.41 deleterious(0) probably_damaging(0.958) TCGA-ND-A4WC-01 X 133922766 133922766 G A FAM122B Silent p.F143F 0.20 TCGA-ND-A4WC-01 X 133988254 133988254 A G FAM122C Silent p.Q192Q 0.44 TCGA-ND-A4WC-01 X 134427749 134427749 C A ZNF75D Missense_Mutation p.Q106H 0.30 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 X 134494128 134494128 C T ZNF449 Silent p.I228I 0.37 TCGA-ND-A4WC-01 X 134494612 134494612 C T ZNF449 Missense_Mutation p.R390W 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-ND-A4WC-01 X 134713730 134713730 G T DDX26B Missense_Mutation p.D676Y 0.26 deleterious(0.04) possibly_damaging(0.673) TCGA-ND-A4WC-01 X 134714991 134714991 C A DDX26B Missense_Mutation p.F800L 0.26 tolerated(0.09) possibly_damaging(0.878) TCGA-ND-A4WC-01 X 134991921 134991921 T C SAGE1 Missense_Mutation p.M569T 0.13 tolerated(0.11) possibly_damaging(0.774) TCGA-ND-A4WC-01 X 135104832 135104832 T G SLC9A6 Missense_Mutation p.F480V 0.24 deleterious(0.03) benign(0.423) TCGA-ND-A4WC-01 X 135426790 135426790 G T GPR112 Nonsense_Mutation p.E309* 0.20 TCGA-ND-A4WC-01 X 135430316 135430316 G T GPR112 Missense_Mutation p.R1484M 0.10 deleterious(0.04) possibly_damaging(0.628) TCGA-ND-A4WC-01 X 135570694 135570694 C A BRS3 Missense_Mutation p.L141I 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 135741501 135741501 T G CD40LG Missense_Mutation p.F238C 0.33 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 135757212 135757212 G A ARHGEF6 Silent p.I663I 0.32 TCGA-ND-A4WC-01 X 135764991 135764991 G A ARHGEF6 Missense_Mutation p.R469W 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 135827455 135827455 T G ARHGEF6 Missense_Mutation p.N129T 0.38 tolerated_low_confidence(0.09) benign(0) TCGA-ND-A4WC-01 X 135961190 135961190 C A RBMX Missense_Mutation p.D68Y 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 X 136112733 136112733 G A GPR101 Silent p.V367V 0.27 TCGA-ND-A4WC-01 X 137793192 137793192 C A FGF13 Intron 0.41 TCGA-ND-A4WC-01 X 138880864 138880864 G A ATP11C Missense_Mutation p.T253M 0.34 deleterious(0.02) probably_damaging(0.988) TCGA-ND-A4WC-01 X 138901568 138901568 G T ATP11C Missense_Mutation p.L59I 0.20 tolerated(1) benign(0.076) TCGA-ND-A4WC-01 X 139038459 139038459 A G CXorf66 Missense_Mutation p.S228P 0.37 tolerated(0.53) benign(0) TCGA-ND-A4WC-01 X 139865861 139865861 C T CDR1 Missense_Mutation p.R224H 0.40 tolerated(0.3) benign(0) TCGA-ND-A4WC-01 X 1407680 1407680 C A CSF2RA Missense_Mutation p.F124L 0.32 tolerated(0.18) possibly_damaging(0.794) TCGA-ND-A4WC-01 X 140785575 140785575 C A SPANXD 3'UTR 0.27 TCGA-ND-A4WC-01 X 140984575 140984575 C T MAGEC3 Intron 0.35 TCGA-ND-A4WC-01 X 140994562 140994562 C A MAGEC1 Missense_Mutation p.L458I 0.29 tolerated_low_confidence(0.17) benign(0.364) TCGA-ND-A4WC-01 X 140996502 140996502 G T MAGEC1 Missense_Mutation p.K1104N 0.42 deleterious(0.01) unknown(0) TCGA-ND-A4WC-01 X 140996562 140996562 G A MAGEC1 Silent p.S1124S 0.29 TCGA-ND-A4WC-01 X 141291545 141291545 G A MAGEC2 Missense_Mutation p.P77S 0.27 tolerated(0.56) benign(0.002) TCGA-ND-A4WC-01 X 141291629 141291629 C A MAGEC2 Missense_Mutation p.V49L 0.35 tolerated_low_confidence(1) benign(0.417) TCGA-ND-A4WC-01 X 1428454 1428454 T A CSF2RA 3'UTR 0.12 TCGA-ND-A4WC-01 X 144337190 144337190 G T SPANXN1 Splice_Site p.X26_splice 0.22 TCGA-ND-A4WC-01 X 144337199 144337199 G A SPANXN1 Silent p.E28E 0.26 TCGA-ND-A4WC-01 X 1460715 1460715 G A IL3RA Silent p.T19T 0.26 TCGA-ND-A4WC-01 X 1467357 1467357 A G IL3RA Missense_Mutation p.I73V 0.36 tolerated(0.07) benign(0.005) TCGA-ND-A4WC-01 X 147030228 147030228 G T FMR1 Missense_Mutation p.R588M 0.09 deleterious_low_confidence(0) possibly_damaging(0.664) TCGA-ND-A4WC-01 X 147924957 147924957 C A AFF2 Nonsense_Mutation p.S421* 0.34 TCGA-ND-A4WC-01 X 148797840 148797840 T G MAGEA11 Missense_Mutation p.L232V 0.35 tolerated(0.06) benign(0.374) TCGA-ND-A4WC-01 X 149013420 149013420 G A MAGEA8 Missense_Mutation p.R125H 0.32 tolerated(0.31) benign(0.001) TCGA-ND-A4WC-01 X 149638113 149638113 G T MAMLD1 Missense_Mutation p.D65Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 149764986 149764986 G T MTM1 Missense_Mutation p.D30Y 0.44 deleterious(0.04) probably_damaging(0.926) TCGA-ND-A4WC-01 X 149899985 149899985 A G MTMR1 Missense_Mutation p.N254S 0.31 tolerated(0.5) benign(0.002) TCGA-ND-A4WC-01 X 149937344 149937344 G T CD99L2 3'UTR 0.36 TCGA-ND-A4WC-01 X 149983348 149983348 A G CD99L2 Silent p.G88G 0.34 TCGA-ND-A4WC-01 X 150154631 150154631 G A HMGB3 Silent p.K86K 0.30 TCGA-ND-A4WC-01 X 1506218 1506218 G A SLC25A6 Silent p.F231F 0.26 TCGA-ND-A4WC-01 X 151093031 151093031 C T MAGEA4 Missense_Mutation p.R299C 0.32 deleterious(0.02) benign(0.004) TCGA-ND-A4WC-01 X 151336597 151336597 A G GABRA3 3'UTR 0.18 TCGA-ND-A4WC-01 X 151358217 151358217 C A GABRA3 Missense_Mutation p.E376D 0.41 tolerated(0.23) possibly_damaging(0.672) TCGA-ND-A4WC-01 X 151424408 151424408 G A GABRA3 Silent p.G131G 0.25 TCGA-ND-A4WC-01 X 151869775 151869775 C T MAGEA6 Silent p.S155S 0.26 TCGA-ND-A4WC-01 X 151935896 151935896 C A MAGEA3 Nonsense_Mutation p.E91* 0.35 TCGA-ND-A4WC-01 X 152159547 152159547 C T PNMA5 Missense_Mutation p.R199H 0.27 deleterious(0) probably_damaging(0.996) TCGA-ND-A4WC-01 X 152160200 152160200 A T PNMA5 5'UTR 0.43 TCGA-ND-A4WC-01 X 152226514 152226514 C A PNMA3 Missense_Mutation p.L368I 0.12 tolerated(0.49) benign(0.004) TCGA-ND-A4WC-01 X 152482977 152482977 G A MAGEA1 Missense_Mutation p.P12S 0.10 tolerated(0.41) probably_damaging(0.973) TCGA-ND-A4WC-01 X 152845520 152845520 G A ATP2B3 Missense_Mutation p.A1143T 0.29 tolerated_low_confidence(1) benign(0) TCGA-ND-A4WC-01 X 152936421 152936421 C T PNCK Missense_Mutation p.R336Q 0.35 tolerated(0.23) probably_damaging(0.947) TCGA-ND-A4WC-01 X 153063544 153063544 G A SSR4 Missense_Mutation p.D124N 0.31 deleterious(0.02) probably_damaging(0.974) TCGA-ND-A4WC-01 X 153135092 153135092 T C L1CAM Missense_Mutation p.I384V 0.09 tolerated(1) benign(0.01) TCGA-ND-A4WC-01 X 153195617 153195617 C A NAA10 Missense_Mutation p.E177D 0.35 tolerated(0.07) benign(0.009) TCGA-ND-A4WC-01 X 153207461 153207461 C A RENBP Missense_Mutation p.E237D 0.35 deleterious(0.04) probably_damaging(0.954) TCGA-ND-A4WC-01 X 153220472 153220472 G A HCFC1 Silent p.S1126S 0.30 TCGA-ND-A4WC-01 X 153227718 153227718 G A HCFC1 Missense_Mutation p.A251V 0.38 tolerated(0.19) probably_damaging(0.995) TCGA-ND-A4WC-01 X 15332668 15332668 C T ASB11 Intron 0.24 TCGA-ND-A4WC-01 X 15344081 15344081 C A PIGA Missense_Mutation p.R268I 0.29 tolerated(0.12) probably_damaging(0.954) TCGA-ND-A4WC-01 X 15349745 15349745 G A PIGA Missense_Mutation p.A103V 0.31 tolerated(0.07) benign(0.309) TCGA-ND-A4WC-01 X 15350106 15350106 C A PIGA 5'UTR 0.30 TCGA-ND-A4WC-01 X 153581372 153581372 C T FLNA Missense_Mutation p.A2075T 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-ND-A4WC-01 X 153663731 153663731 C T ATP6AP1 Silent p.V361V 0.32 TCGA-ND-A4WC-01 X 153692557 153692557 G A PLXNA3 Missense_Mutation p.E577K 0.39 tolerated(0.53) benign(0.1) TCGA-ND-A4WC-01 X 154004474 154004474 A C DKC1 Missense_Mutation p.S451R 0.29 tolerated(0.16) benign(0.004) TCGA-ND-A4WC-01 X 154007592 154007592 C T MPP1 Missense_Mutation p.A421T 0.25 tolerated(0.4) benign(0.008) TCGA-ND-A4WC-01 X 154157019 154157019 G A F8 Silent p.D1682D 0.40 TCGA-ND-A4WC-01 X 154158062 154158062 T C F8 Missense_Mutation p.K1335E 0.37 tolerated(0.23) benign(0.002) TCGA-ND-A4WC-01 X 154290113 154290113 G T CMC4 3'UTR 0.34 TCGA-ND-A4WC-01 X 154319106 154319106 G T BRCC3 Missense_Mutation p.K180N 0.26 deleterious(0.03) probably_damaging(0.928) TCGA-ND-A4WC-01 X 154741450 154741450 T G TMLHE Missense_Mutation p.E214D 0.33 deleterious(0.01) possibly_damaging(0.756) TCGA-ND-A4WC-01 X 155003431 155003431 T C SPRY3 5'UTR 0.47 TCGA-ND-A4WC-01 X 15549500 15549500 A G BMX Missense_Mutation p.Y330C 0.32 deleterious(0.01) benign(0.259) TCGA-ND-A4WC-01 X 15589793 15589793 G C ACE2 Missense_Mutation p.D597E 0.33 tolerated(1) benign(0.001) TCGA-ND-A4WC-01 X 15706824 15706824 C T CA5BP1 RNA 0.23 TCGA-ND-A4WC-01 X 15800776 15800776 G A CA5B Missense_Mutation p.A315T 0.23 tolerated_low_confidence(0.15) benign(0.009) TCGA-ND-A4WC-01 X 1584447 1584447 G A P2RY8 Silent p.S335S 0.27 TCGA-ND-A4WC-01 X 16170395 16170395 G A GRPR Missense_Mutation p.R261Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 17153397 17153397 C A REPS2 Missense_Mutation p.S559Y 0.35 tolerated(0.06) benign(0.364) TCGA-ND-A4WC-01 X 17167179 17167179 G T REPS2 3'UTR 0.37 TCGA-ND-A4WC-01 X 17746280 17746280 A G NHS Missense_Mutation p.K1331E 0.31 tolerated(0.06) possibly_damaging(0.628) TCGA-ND-A4WC-01 X 18260638 18260638 G T SCML2 Missense_Mutation p.S632Y 0.13 deleterious(0) probably_damaging(0.976) TCGA-ND-A4WC-01 X 18622738 18622738 C A CDKL5 Missense_Mutation p.S565Y 0.08 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-ND-A4WC-01 X 18626974 18626974 C T CDKL5 Missense_Mutation p.S663L 0.09 tolerated_low_confidence(0.3) benign(0) TCGA-ND-A4WC-01 X 18638065 18638065 G T CDKL5 Missense_Mutation p.K785N 0.47 deleterious_low_confidence(0) benign(0.19) TCGA-ND-A4WC-01 X 19009003 19009003 T C GPR64 Silent p.L1011L 0.37 TCGA-ND-A4WC-01 X 19032031 19032031 T G GPR64 Missense_Mutation p.N291T 0.39 tolerated_low_confidence(0.43) benign(0.002) TCGA-ND-A4WC-01 X 19379463 19379463 C T MAP3K15 Missense_Mutation p.R1284Q 0.32 tolerated(0.32) benign(0.006) TCGA-ND-A4WC-01 X 19560162 19560162 G A SH3KBP1 Silent p.F591F 0.17 TCGA-ND-A4WC-01 X 19725022 19725022 C T SH3KBP1 Missense_Mutation p.D123N 0.31 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 X 19947913 19947913 C A CXorf23 Missense_Mutation p.R670I 0.33 deleterious(0) probably_damaging(0.94) TCGA-ND-A4WC-01 X 20043155 20043155 C T MAP7D2 Silent p.A442A 0.37 TCGA-ND-A4WC-01 X 20060638 20060638 G T MAP7D2 Missense_Mutation p.S330Y 0.36 deleterious(0) probably_damaging(0.99) TCGA-ND-A4WC-01 X 20154429 20154429 G A EIF1AX Intron 0.43 TCGA-ND-A4WC-01 X 22003283 22003283 G A SMS Missense_Mutation p.R296K 0.27 deleterious(0.04) benign(0.285) TCGA-ND-A4WC-01 X 22291306 22291306 C A ZNF645 Silent p.I66I 0.33 TCGA-ND-A4WC-01 X 23397857 23397857 T C PTCHD1 Silent p.N167N 0.16 TCGA-ND-A4WC-01 X 23953371 23953371 G A CXorf58 Missense_Mutation p.R205H 0.39 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 X 24006621 24006621 G A KLHL15 Missense_Mutation p.P411L 0.38 tolerated(0.07) possibly_damaging(0.877) TCGA-ND-A4WC-01 X 24024277 24024277 C A KLHL15 Missense_Mutation p.E178D 0.36 tolerated(0.29) benign(0.07) TCGA-ND-A4WC-01 X 24228960 24228960 G T ZFX Nonsense_Mutation p.E629* 0.31 TCGA-ND-A4WC-01 X 2658983 2658983 G A CD99 3'UTR 0.35 TCGA-ND-A4WC-01 X 2835914 2835914 G A ARSD Missense_Mutation p.T265M 0.40 deleterious(0.01) possibly_damaging(0.564) TCGA-ND-A4WC-01 X 2861177 2861177 G A ARSE Missense_Mutation p.S352L 0.28 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 29414549 29414549 C A IL1RAPL1 Silent p.I179I 0.25 TCGA-ND-A4WC-01 X 29938105 29938105 C A IL1RAPL1 Silent p.I317I 0.40 TCGA-ND-A4WC-01 X 29959904 29959904 C T IL1RAPL1 Silent p.L398L 0.26 TCGA-ND-A4WC-01 X 30237723 30237723 C T MAGEB2 3'UTR 0.36 TCGA-ND-A4WC-01 X 30254099 30254099 G T MAGEB3 Missense_Mutation p.G20C 0.22 tolerated(0.1) benign(0.044) TCGA-ND-A4WC-01 X 30709251 30709251 C A GK Missense_Mutation p.L117I 0.31 tolerated(0.4) benign(0.412) TCGA-ND-A4WC-01 X 30872825 30872825 G T TAB3 Silent p.I319I 0.16 TCGA-ND-A4WC-01 X 31089558 31089558 G A FTHL17 Silent p.F171F 0.31 TCGA-ND-A4WC-01 X 31947829 31947829 T G DMD Missense_Mutation p.I2266L 0.37 benign(0.068) TCGA-ND-A4WC-01 X 3238669 3238669 T G MXRA5 Missense_Mutation p.K1686T 0.37 tolerated(0.25) benign(0.01) TCGA-ND-A4WC-01 X 32404483 32404483 C A DMD Nonsense_Mutation p.E1540* 0.35 TCGA-ND-A4WC-01 X 3240878 3240878 C A MXRA5 Nonsense_Mutation p.G950* 0.38 TCGA-ND-A4WC-01 X 3242220 3242220 G A MXRA5 Silent p.N502N 0.34 TCGA-ND-A4WC-01 X 32827713 32827713 G A DMD Silent p.D182D 0.38 TCGA-ND-A4WC-01 X 34148674 34148674 C A FAM47A Missense_Mutation p.K574N 0.19 tolerated(0.12) benign(0.349) TCGA-ND-A4WC-01 X 35974224 35974224 G T CXorf22 Nonsense_Mutation p.E441* 0.32 TCGA-ND-A4WC-01 X 35984785 35984785 C T CXorf22 Missense_Mutation p.S505L 0.37 tolerated(0.11) benign(0.059) TCGA-ND-A4WC-01 X 35988963 35988963 G A CXorf22 Silent p.K631K 0.24 TCGA-ND-A4WC-01 X 36090024 36090025 - A CHDC2 Frame_Shift_Ins p.T45Dfs*5 0.29 TCGA-ND-A4WC-01 X 37586899 37586899 G T XK Missense_Mutation p.M173I 0.20 tolerated(0.08) possibly_damaging(0.85) TCGA-ND-A4WC-01 X 37893260 37893260 A T SYTL5 Missense_Mutation p.R40W 0.27 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 X 38008871 38008871 A C SRPX 3'UTR 0.47 TCGA-ND-A4WC-01 X 40465048 40465048 G T ATP6AP2 3'UTR 0.15 TCGA-ND-A4WC-01 X 40498296 40498296 C T CXorf38 Missense_Mutation p.D146N 0.34 deleterious(0.04) possibly_damaging(0.831) TCGA-ND-A4WC-01 X 40586033 40586033 A G MED14 Missense_Mutation p.W105R 0.24 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 41043781 41043781 G A USP9X Silent p.P1137P 0.15 TCGA-ND-A4WC-01 X 41055931 41055931 T G USP9X Missense_Mutation p.I1391M 0.49 tolerated(0.21) probably_damaging(0.964) TCGA-ND-A4WC-01 X 41057954 41057954 A C USP9X Missense_Mutation p.Q1518H 0.43 tolerated(0.36) probably_damaging(0.976) TCGA-ND-A4WC-01 X 41555424 41555424 A G GPR34 Missense_Mutation p.M180V 0.29 tolerated(0.43) benign(0) TCGA-ND-A4WC-01 X 41555868 41555868 T G GPR34 Missense_Mutation p.F328V 0.11 deleterious(0) probably_damaging(0.992) TCGA-ND-A4WC-01 X 44035549 44035549 G T EFHC2 Silent p.S677S 0.50 TCGA-ND-A4WC-01 X 46433855 46433855 C T CHST7 Silent p.C163C 0.37 TCGA-ND-A4WC-01 X 47060346 47060346 C T UBA1 Silent p.F178F 0.33 TCGA-ND-A4WC-01 X 47424688 47424688 A G ARAF Missense_Mutation p.R166G 0.11 tolerated(0.39) benign(0.001) TCGA-ND-A4WC-01 X 47444652 47444652 G A TIMP1 Missense_Mutation p.V84I 0.13 tolerated(0.93) benign(0.003) TCGA-ND-A4WC-01 X 47516992 47516992 T G UXT Missense_Mutation p.N88T 0.36 deleterious(0) probably_damaging(0.927) TCGA-ND-A4WC-01 X 47517203 47517203 C A UXT Missense_Mutation p.R65I 0.13 deleterious(0) benign(0.265) TCGA-ND-A4WC-01 X 47775478 47775478 C A ZNF81 Missense_Mutation p.S478Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 47775514 47775514 G T ZNF81 Missense_Mutation p.R490I 0.35 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 47867907 47867907 G T SPACA5 Missense_Mutation p.K93N 0.20 tolerated(0.25) benign(0.054) TCGA-ND-A4WC-01 X 47918899 47918899 C A ZNF630 Missense_Mutation p.R311M 0.64 deleterious(0.01) possibly_damaging(0.558) TCGA-ND-A4WC-01 X 47919053 47919053 C T ZNF630 Missense_Mutation p.E260K 0.67 tolerated(0.09) benign(0.003) TCGA-ND-A4WC-01 X 48054555 48054555 C T SSX5 Missense_Mutation p.R27K 0.17 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-ND-A4WC-01 X 48542671 48542671 G T WAS Splice_Site p.X45_splice 0.38 TCGA-ND-A4WC-01 X 48542779 48542779 G T WAS Missense_Mutation p.Q80H 0.43 deleterious(0.01) possibly_damaging(0.908) TCGA-ND-A4WC-01 X 48549533 48549533 G T WAS Missense_Mutation p.D497Y 0.38 deleterious_low_confidence(0) unknown(0) TCGA-ND-A4WC-01 X 48682971 48682971 G T HDAC6 Missense_Mutation p.K1199N 0.41 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WC-01 X 48839393 48839393 C T GRIPAP1 Missense_Mutation p.E533K 0.27 probably_damaging(0.966) TCGA-ND-A4WC-01 X 48891263 48891263 C A TFE3 Missense_Mutation p.Q346H 0.30 deleterious(0) benign(0.001) TCGA-ND-A4WC-01 X 49029577 49029577 C T PLP2 Silent p.V66V 0.31 TCGA-ND-A4WC-01 X 49032046 49032046 T A PRICKLE3 Silent p.R608R 0.36 TCGA-ND-A4WC-01 X 49061728 49061728 C A CACNA1F Nonsense_Mutation p.E1935* 0.30 TCGA-ND-A4WC-01 X 49084859 49084859 G A CACNA1F Missense_Mutation p.R290C 0.44 tolerated(0.05) probably_damaging(1) TCGA-ND-A4WC-01 X 49598541 49598541 C A PAGE4 3'UTR 0.25 TCGA-ND-A4WC-01 X 49958138 49958138 C A AKAP4 Missense_Mutation p.R409I 0.27 deleterious(0) probably_damaging(0.938) TCGA-ND-A4WC-01 X 50053473 50053473 G T CCNB3 Missense_Mutation p.L768F 0.29 tolerated(0.1) benign(0.349) TCGA-ND-A4WC-01 X 50129446 50129446 C A DGKK RNA 0.34 TCGA-ND-A4WC-01 X 50167262 50167262 A C DGKK RNA 0.11 TCGA-ND-A4WC-01 X 50339755 50339755 G A SHROOM4 Silent p.L1474L 0.28 TCGA-ND-A4WC-01 X 50377889 50377889 G T SHROOM4 Missense_Mutation p.S395Y 0.40 deleterious(0.01) possibly_damaging(0.553) TCGA-ND-A4WC-01 X 52681946 52681946 C A SSX7 Missense_Mutation p.R53I 0.35 tolerated(0.14) benign(0.008) TCGA-ND-A4WC-01 X 53254069 53254069 C T KDM5C Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-ND-A4WC-01 X 53562435 53562435 G A HUWE1 Missense_Mutation p.R4187C 0.30 unknown(0) TCGA-ND-A4WC-01 X 53574798 53574798 G T HUWE1 Missense_Mutation p.S3491Y 0.32 unknown(0) TCGA-ND-A4WC-01 X 54277993 54277993 G T WNK3 Missense_Mutation p.S832Y 0.31 tolerated_low_confidence(0.12) benign(0.439) TCGA-ND-A4WC-01 X 54785156 54785156 G A ITIH6 Missense_Mutation p.R451C 0.34 tolerated(0.25) benign(0.01) TCGA-ND-A4WC-01 X 54953058 54953058 G T TRO Missense_Mutation p.G567V 0.32 deleterious(0) unknown(0) TCGA-ND-A4WC-01 X 54978379 54978379 G A PFKFB1 Missense_Mutation p.R269C 0.27 probably_damaging(1) TCGA-ND-A4WC-01 X 55042056 55042056 G A ALAS2 Missense_Mutation p.R375C 0.45 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 55102524 55102524 A G PAGE2B Missense_Mutation p.D17G 0.27 tolerated(0.12) possibly_damaging(0.631) TCGA-ND-A4WC-01 X 55479290 55479290 C A MAGEH1 Missense_Mutation p.F161L 0.34 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-ND-A4WC-01 X 57146735 57146735 G T SPIN2B Missense_Mutation p.L110I 0.56 deleterious(0.04) benign(0.2) TCGA-ND-A4WC-01 X 57407418 57407418 T G FAAH2 Missense_Mutation p.L318V 0.42 tolerated(0.06) benign(0.411) TCGA-ND-A4WC-01 X 57935107 57935107 G T ZXDA Missense_Mutation p.S583Y 0.32 deleterious(0) possibly_damaging(0.828) TCGA-ND-A4WC-01 X 5811614 5811614 T G NLGN4X Missense_Mutation p.K565N 0.30 tolerated(0.06) probably_damaging(0.99) TCGA-ND-A4WC-01 X 5821807 5821807 G A NLGN4X Silent p.V304V 0.36 TCGA-ND-A4WC-01 X 62893985 62893985 T G ARHGEF9 Missense_Mutation p.E286A 0.12 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 63574754 63574754 T G MTMR8 Missense_Mutation p.E124A 0.29 tolerated(0.23) benign(0.032) TCGA-ND-A4WC-01 X 64743516 64743516 C T LAS1L Missense_Mutation p.A458T 0.35 tolerated(0.29) benign(0.014) TCGA-ND-A4WC-01 X 64743963 64743963 C A LAS1L Nonsense_Mutation p.E425* 0.34 TCGA-ND-A4WC-01 X 64751318 64751318 C T LAS1L Missense_Mutation p.V145I 0.08 tolerated(0.08) benign(0.084) TCGA-ND-A4WC-01 X 64887624 64887624 G A MSN 5'UTR 0.35 TCGA-ND-A4WC-01 X 65819454 65819454 C T EDA2R Missense_Mutation p.E277K 0.25 deleterious(0) probably_damaging(0.956) TCGA-ND-A4WC-01 X 67333047 67333047 G T OPHN1 Missense_Mutation p.H466N 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-ND-A4WC-01 X 67426472 67426472 C A OPHN1 Missense_Mutation p.E292D 0.25 tolerated(0.53) benign(0.321) TCGA-ND-A4WC-01 X 67943867 67943867 C T STARD8 Missense_Mutation p.S1033L 0.32 tolerated(0.17) possibly_damaging(0.786) TCGA-ND-A4WC-01 X 68381328 68381328 T C PJA1 Missense_Mutation p.D585G 0.38 deleterious(0) possibly_damaging(0.566) TCGA-ND-A4WC-01 X 69366640 69366640 G A IGBP1 Missense_Mutation p.E214K 0.28 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 69460198 69460198 C A AWAT1 3'UTR 0.22 TCGA-ND-A4WC-01 X 69507613 69507613 T C PDZD11 Missense_Mutation p.D99G 0.31 tolerated(1) benign(0.007) TCGA-ND-A4WC-01 X 69640193 69640193 G T KIF4A 3'UTR 0.30 TCGA-ND-A4WC-01 X 69652184 69652184 G T GDPD2 Silent p.V496V 0.33 TCGA-ND-A4WC-01 X 69890345 69890345 G A TEX11 Missense_Mutation p.A436V 0.27 deleterious(0) probably_damaging(0.945) TCGA-ND-A4WC-01 X 70344099 70344099 A C MED12 Missense_Mutation p.N612T 0.39 probably_damaging(0.932) TCGA-ND-A4WC-01 X 70375128 70375128 G A NLGN3 Silent p.G214G 0.35 TCGA-ND-A4WC-01 X 70460939 70460939 G A ZMYM3 Missense_Mutation p.R1314C 0.41 deleterious(0) probably_damaging(0.963) TCGA-ND-A4WC-01 X 70461091 70461091 G T ZMYM3 Missense_Mutation p.F1302L 0.37 tolerated(0.33) benign(0.192) TCGA-ND-A4WC-01 X 70470017 70470017 C T ZMYM3 Silent p.Q370Q 0.51 TCGA-ND-A4WC-01 X 70514336 70514336 A C NONO Missense_Mutation p.K203T 0.18 deleterious(0.02) possibly_damaging(0.662) TCGA-ND-A4WC-01 X 70757899 70757899 G A OGT Missense_Mutation p.V147I 0.40 tolerated(0.31) benign(0.002) TCGA-ND-A4WC-01 X 70793483 70793483 C T OGT Missense_Mutation p.R994C 0.32 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 70823530 70823530 G T ACRC Missense_Mutation p.D135Y 0.35 possibly_damaging(0.861) TCGA-ND-A4WC-01 X 70832208 70832208 G A ACRC Missense_Mutation p.R585Q 0.35 unknown(0) TCGA-ND-A4WC-01 X 70832407 70832407 G A ACRC Silent p.T651T 0.50 TCGA-ND-A4WC-01 X 71358707 71358707 G A NHSL2 Missense_Mutation p.E437K 0.33 tolerated(0.35) possibly_damaging(0.458) TCGA-ND-A4WC-01 X 71359836 71359836 C T NHSL2 Missense_Mutation p.T813I 0.32 deleterious(0.03) possibly_damaging(0.662) TCGA-ND-A4WC-01 X 71425104 71425104 C A ERCC6L Missense_Mutation p.E1171D 0.45 deleterious(0.04) benign(0.219) TCGA-ND-A4WC-01 X 71425342 71425342 G T ERCC6L Missense_Mutation p.S1092Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WC-01 X 71802319 71802319 G T PHKA1 Missense_Mutation p.H1143N 0.30 tolerated(0.63) benign(0) TCGA-ND-A4WC-01 X 72433253 72433253 C T NAP1L2 Missense_Mutation p.R359Q 0.37 deleterious(0.02) benign(0.116) TCGA-ND-A4WC-01 X 72433721 72433721 T A NAP1L2 Missense_Mutation p.Y203F 0.47 tolerated(0.5) benign(0.416) TCGA-ND-A4WC-01 X 73046027 73046027 C A XIST RNA 0.33 TCGA-ND-A4WC-01 X 73069461 73069461 C A XIST RNA 0.15 TCGA-ND-A4WC-01 X 73811355 73811355 G A RLIM Missense_Mutation p.R599C 0.44 deleterious(0) probably_damaging(0.983) TCGA-ND-A4WC-01 X 74282175 74282175 C T ABCB7 Silent p.S642S 0.37 TCGA-ND-A4WC-01 X 74318853 74318853 G T ABCB7 Missense_Mutation p.S127Y 0.31 deleterious(0.01) possibly_damaging(0.642) TCGA-ND-A4WC-01 X 75650001 75650001 C A MAGEE1 Missense_Mutation p.L560M 0.31 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 76813007 76813007 G T ATRX Missense_Mutation p.T2205N 0.13 benign(0.053) TCGA-ND-A4WC-01 X 76888737 76888737 G A ATRX Missense_Mutation p.R1698W 0.13 probably_damaging(0.995) TCGA-ND-A4WC-01 X 76907620 76907620 C T ATRX Missense_Mutation p.R1514Q 0.08 probably_damaging(0.997) TCGA-ND-A4WC-01 X 78010799 78010799 C T LPAR4 Nonsense_Mutation p.R145* 0.32 TCGA-ND-A4WC-01 X 78217119 78217119 C A P2RY10 3'UTR 0.43 TCGA-ND-A4WC-01 X 79932179 79932179 A G BRWD3 Missense_Mutation p.S1780P 0.42 deleterious_low_confidence(0) unknown(0) TCGA-ND-A4WC-01 X 79932799 79932799 C A BRWD3 Missense_Mutation p.R1573I 0.44 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ND-A4WC-01 X 79947407 79947407 T C BRWD3 Silent p.K1132K 0.31 TCGA-ND-A4WC-01 X 79951425 79951425 C A BRWD3 Nonsense_Mutation p.E1045* 0.27 TCGA-ND-A4WC-01 X 79979252 79979252 C T BRWD3 Missense_Mutation p.E549K 0.38 tolerated(0.4) benign(0.017) TCGA-ND-A4WC-01 X 79980449 79980449 G A BRWD3 Missense_Mutation p.R502W 0.33 deleterious(0.02) benign(0.068) TCGA-ND-A4WC-01 X 82763427 82763427 G A POU3F4 Missense_Mutation p.R32H 0.43 deleterious(0) probably_damaging(0.95) TCGA-ND-A4WC-01 X 82764037 82764037 C A POU3F4 Missense_Mutation p.F235L 0.36 deleterious(0) probably_damaging(1) TCGA-ND-A4WC-01 X 83127903 83127903 A C CYLC1 Missense_Mutation p.K63Q 0.25 tolerated(0.13) benign(0.07) TCGA-ND-A4WC-01 X 83730395 83730395 C T HDX Missense_Mutation p.R4H 0.35 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WC-01 X 84301495 84301495 C A APOOL Missense_Mutation p.S20Y 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-ND-A4WC-01 X 84563198 84563198 G A POF1B Missense_Mutation p.L328F 0.27 deleterious(0.03) benign(0.187) TCGA-ND-A4WC-01 X 85404080 85404080 C T DACH2 Silent p.F152F 0.29 TCGA-ND-A4WC-01 X 8553380 8553380 G A KAL1 Nonsense_Mutation p.R262* 0.43 TCGA-ND-A4WC-01 X 85969606 85969606 T C DACH2 Silent p.P329P 0.14 TCGA-ND-A4WC-01 X 86924355 86924355 C A KLHL4 Missense_Mutation p.F708L 0.39 deleterious_low_confidence(0.03) benign(0.074) TCGA-ND-A4WC-01 X 88009147 88009147 T C CPXCR1 Silent p.I244I 0.64 TCGA-ND-A4WC-01 X 90690525 90690525 G T PABPC5 5'UTR 0.21 TCGA-ND-A4WC-01 X 90690889 90690889 G T PABPC5 Missense_Mutation p.V105L 0.09 deleterious(0.02) benign(0.057) TCGA-ND-A4WC-01 X 90691338 90691338 G T PABPC5 Missense_Mutation p.K254N 0.11 tolerated(0.09) benign(0.163) TCGA-ND-A4WC-01 X 92927916 92927916 G T NAP1L3 Missense_Mutation p.H130N 0.28 deleterious(0) probably_damaging(0.968) TCGA-ND-A4WC-01 X 96192338 96192338 G A DIAPH2 Missense_Mutation p.R399Q 0.25 deleterious(0) unknown(0) TCGA-ND-A4WC-01 X 9709432 9709432 A G GPR143 Silent p.N277N 0.33 TCGA-ND-A4WC-01 X 9862500 9862500 C A SHROOM2 Silent p.P184P 0.32 TCGA-ND-A4WC-01 X 99657837 99657837 G T PCDH19 Nonsense_Mutation p.Y767* 0.42 TCGA-ND-A4WC-01 X 99662932 99662932 C T PCDH19 Missense_Mutation p.V222I 0.34 tolerated(0.16) benign(0.131) TCGA-ND-A4WC-01 X 99852524 99852524 C A TNMD Missense_Mutation p.F149L 0.36 tolerated(0.18) benign(0.089) TCGA-ND-A4WC-01 X 99922392 99922392 C A SRPX2 Silent p.I361I 0.38 TCGA-ND-A4WF-01 10 101379857 101379857 C G SLC25A28 Missense_Mutation p.G79A 0.31 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WF-01 10 68857653 68857653 A C LRRTM3 3'UTR 0.38 TCGA-ND-A4WF-01 11 4673735 4673735 C G OR51E1 5'UTR 0.57 TCGA-ND-A4WF-01 11 48285756 48285756 T C OR4X1 Missense_Mutation p.V115A 0.43 tolerated(0.1) possibly_damaging(0.593) TCGA-ND-A4WF-01 11 5701143 5701143 C T TRIM5 Missense_Mutation p.G89R 0.06 tolerated(0.32) benign(0.019) TCGA-ND-A4WF-01 11 57076216 57076216 G C TNKS1BP1 Silent p.T1323T 0.44 TCGA-ND-A4WF-01 12 101551128 101551128 C G SLC5A8 Missense_Mutation p.D588H 0.42 tolerated(0.05) possibly_damaging(0.538) TCGA-ND-A4WF-01 12 103696308 103696308 C T C12orf42 Missense_Mutation p.G221S 0.38 deleterious(0.05) probably_damaging(0.999) TCGA-ND-A4WF-01 12 10560223 10560223 T C KLRC4 3'UTR 0.95 TCGA-ND-A4WF-01 12 6686974 6686974 T C CHD4 Missense_Mutation p.K1780E 0.98 deleterious(0) probably_damaging(0.987) TCGA-ND-A4WF-01 12 7803729 7803729 G T APOBEC1 Missense_Mutation p.H151N 0.66 deleterious(0.02) benign(0.403) TCGA-ND-A4WF-01 12 91502614 91502614 G A LUM Missense_Mutation p.P48L 0.41 deleterious(0) probably_damaging(0.971) TCGA-ND-A4WF-01 14 105639417 105639417 C T NUDT14 Missense_Mutation p.V204I 0.71 tolerated(0.05) benign(0.149) TCGA-ND-A4WF-01 14 39556161 39556161 G A SEC23A Nonsense_Mutation p.Q219* 0.71 TCGA-ND-A4WF-01 16 69724960 69724960 C A NFAT5 Missense_Mutation p.T631K 0.28 benign(0.075) TCGA-ND-A4WF-01 17 26116637 26116637 G A NOS2 Missense_Mutation p.T63M 0.97 tolerated(0.15) benign(0.009) TCGA-ND-A4WF-01 17 26875096 26875096 C T UNC119 Missense_Mutation p.D120N 0.95 tolerated(0.08) possibly_damaging(0.848) TCGA-ND-A4WF-01 17 34310906 34310906 G A CCL14 Silent p.G87G 0.09 TCGA-ND-A4WF-01 17 48562290 48562290 T A RSAD1 3'UTR 0.45 TCGA-ND-A4WF-01 17 62892272 62892272 C G LRRC37A3 Missense_Mutation p.E368D 0.18 deleterious(0.04) benign(0.092) TCGA-ND-A4WF-01 17 6722546 6722546 G C TEKT1 Missense_Mutation p.P108A 0.17 deleterious(0) possibly_damaging(0.856) TCGA-ND-A4WF-01 17 7683556 7683556 T A DNAH2 Missense_Mutation p.L1935H 0.07 probably_damaging(0.989) TCGA-ND-A4WF-01 17 78081505 78081505 G A GAA Missense_Mutation p.R281Q 0.63 deleterious(0.02) possibly_damaging(0.861) TCGA-ND-A4WF-01 18 55102969 55102969 C G ONECUT2 Silent p.A7A 0.27 TCGA-ND-A4WF-01 19 13470526 13470526 C A CACNA1A Missense_Mutation p.W291L 0.56 possibly_damaging(0.803) TCGA-ND-A4WF-01 19 51920476 51920476 C T SIGLEC10 Missense_Mutation p.G94E 0.58 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WF-01 19 52715971 52715971 C G PPP2R1A Missense_Mutation p.P179R 0.42 deleterious(0) probably_damaging(0.997) TCGA-ND-A4WF-01 19 8206865 8206865 C T FBN3 Missense_Mutation p.R233H 0.28 deleterious(0) probably_damaging(1) TCGA-ND-A4WF-01 19 9578448 9578448 A G ZNF560 Missense_Mutation p.L392P 0.38 deleterious(0.04) benign(0.256) TCGA-ND-A4WF-01 1 152287054 152287054 T C FLG Missense_Mutation p.K103R 0.11 benign(0.255) TCGA-ND-A4WF-01 1 157014118 157014118 C G ARHGEF11 Missense_Mutation p.S2T 0.54 deleterious_low_confidence(0.03) possibly_damaging(0.631) TCGA-ND-A4WF-01 1 167096275 167096275 C T DUSP27 Missense_Mutation p.T636M 0.49 deleterious(0) possibly_damaging(0.799) TCGA-ND-A4WF-01 1 236746150 236746150 T C HEATR1 Silent p.E816E 0.23 TCGA-ND-A4WF-01 1 247737614 247737614 T G GCSAML Missense_Mutation p.L113R 0.23 deleterious(0) possibly_damaging(0.773) TCGA-ND-A4WF-01 20 58533811 58533811 G C CDH26 Silent p.S10S 0.28 TCGA-ND-A4WF-01 21 17250147 17250147 A G USP25 Silent p.E944E 0.40 TCGA-ND-A4WF-01 21 32007616 32007616 C T KRTAP20-2 Missense_Mutation p.R12C 0.44 unknown(0) TCGA-ND-A4WF-01 21 47421152 47421152 C T COL6A1 Intron 0.61 TCGA-ND-A4WF-01 2 170494027 170494027 C T PPIG Silent p.S753S 0.56 TCGA-ND-A4WF-01 2 223499175 223499175 T C FARSB Missense_Mutation p.I181V 0.34 deleterious(0.02) possibly_damaging(0.876) TCGA-ND-A4WF-01 2 32108519 32108519 C G MEMO1 Missense_Mutation p.R198P 0.32 tolerated(0.06) possibly_damaging(0.692) TCGA-ND-A4WF-01 3 121435639 121435639 G A GOLGB1 Silent p.L411L 0.38 TCGA-ND-A4WF-01 3 133099186 133099186 C T TMEM108 Missense_Mutation p.R211W 0.52 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ND-A4WF-01 3 139078198 139078198 A G COPB2 Silent p.D739D 0.43 TCGA-ND-A4WF-01 3 169540472 169540472 G A LRRIQ4 Missense_Mutation p.E255K 0.82 tolerated(0.57) benign(0.067) TCGA-ND-A4WF-01 3 178952007 178952007 A G PIK3CA Missense_Mutation p.Y1021C 0.83 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WF-01 3 185252705 185252705 C T LIPH Missense_Mutation p.D89N 0.77 tolerated(0.6) benign(0.001) TCGA-ND-A4WF-01 3 49847420 49847420 G A UBA7 Silent p.H610H 0.05 TCGA-ND-A4WF-01 3 62188855 62188855 G A PTPRG Silent p.A462A 0.35 TCGA-ND-A4WF-01 3 93813928 93813928 G A NSUN3 Missense_Mutation p.D225N 0.38 tolerated(0.14) probably_damaging(0.914) TCGA-ND-A4WF-01 4 106638979 106638979 A G GSTCD Missense_Mutation p.D70G 0.39 tolerated(0.33) benign(0.002) TCGA-ND-A4WF-01 4 153249384 153249384 C G FBXW7 Missense_Mutation p.R465P 0.42 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WF-01 4 38800071 38800071 C A TLR1 Missense_Mutation p.A128S 0.42 tolerated(0.22) benign(0.08) TCGA-ND-A4WF-01 4 39229838 39229838 C T WDR19 Silent p.D546D 0.29 TCGA-ND-A4WF-01 5 108203563 108203563 C T FER Nonsense_Mutation p.Q193* 0.17 TCGA-ND-A4WF-01 5 110438053 110438053 A G WDR36 Silent p.L240L 0.67 TCGA-ND-A4WF-01 5 177031297 177031297 C T B4GALT7 Silent p.D56D 0.13 TCGA-ND-A4WF-01 6 144780347 144780347 T C UTRN Missense_Mutation p.I855T 0.15 deleterious(0.02) benign(0.097) TCGA-ND-A4WF-01 6 15497073 15497073 G T JARID2 Silent p.S539S 0.34 TCGA-ND-A4WF-01 6 43401078 43401078 C T ABCC10 Missense_Mutation p.H454Y 0.58 tolerated(0.23) benign(0.024) TCGA-ND-A4WF-01 7 42004014 42004014 T C GLI3 Missense_Mutation p.S1553G 0.46 tolerated(1) benign(0.004) TCGA-ND-A4WF-01 7 57509956 57509956 G T ZNF716 5'UTR 0.33 TCGA-ND-A4WF-01 7 91763674 91763674 G A CYP51A1 Missense_Mutation p.A2V 0.18 deleterious_low_confidence(0) unknown(0) TCGA-ND-A4WF-01 7 99425711 99425711 A - CYP3A43 5'Flank 0.14 TCGA-ND-A4WF-01 7 99696771 99696771 G A MCM7 Missense_Mutation p.R153W 0.05 deleterious(0) possibly_damaging(0.757) TCGA-ND-A4WF-01 8 106814196 106814196 C T ZFPM2 Missense_Mutation p.S629F 0.24 deleterious(0.02) possibly_damaging(0.646) TCGA-ND-A4WF-01 8 133141882 133141882 G A KCNQ3 Missense_Mutation p.P749L 0.43 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WF-01 8 135545196 135545196 C T ZFAT Missense_Mutation p.C999Y 0.55 deleterious(0) probably_damaging(0.999) TCGA-ND-A4WF-01 8 145619479 145619479 T A CPSF1 Missense_Mutation p.M1261L 0.23 tolerated(0.73) benign(0.006) TCGA-ND-A4WF-01 8 51705429 51705429 A C SNTG1 3'UTR 0.38 TCGA-ND-A4WF-01 9 130095380 130095380 G A GARNL3 Missense_Mutation p.R250H 0.90 deleterious(0) probably_damaging(0.991) TCGA-ND-A4WF-01 9 18622331 18622331 C T ADAMTSL1 Nonsense_Mutation p.R189* 0.32 TCGA-ND-A4WF-01 9 26961996 26961996 C T IFT74 Missense_Mutation p.R11C 0.50 deleterious(0) probably_damaging(0.989) TCGA-ND-A4WF-01 X 122616806 122616806 T C GRIA3 Missense_Mutation p.F866L 0.29 tolerated_low_confidence(0.63) benign(0.007) TCGA-ND-A4WF-01 X 141291465 141291465 G C MAGEC2 Missense_Mutation p.C103W 0.63 tolerated(0.19) probably_damaging(0.963) TCGA-ND-A4WF-01 X 142605155 142605155 T C SPANXN3 Missense_Mutation p.K22R 0.04 tolerated(0.16) benign(0.21) TCGA-ND-A4WF-01 X 153714147 153714147 G A UBL4A Missense_Mutation p.A109V 0.35 deleterious(0.05) benign(0.002) TCGA-ND-A4WF-01 X 21670532 21670532 A G CNKSR2 Missense_Mutation p.I1000V 0.56 deleterious(0.05) benign(0.003) TCGA-ND-A4WF-01 X 24225888 24225888 G A ZFX Missense_Mutation p.D286N 0.30 tolerated(0.06) benign(0.031) TCGA-ND-A4WF-01 X 36091420 36091420 T G CHDC2 Missense_Mutation p.F119V 0.45 deleterious(0) probably_damaging(0.998) TCGA-ND-A4WF-01 X 65242365 65242365 C A VSIG4 Intron 0.28 TCGA-ND-A4WF-01 X 77528817 77528817 C A CYSLTR1 Missense_Mutation p.V143L 0.28 tolerated(0.3) benign(0.06) TCGA-ND-A4WF-01 X 86869493 86869493 T A KLHL4 Missense_Mutation p.L216H 0.47 tolerated(0.19) possibly_damaging(0.754) TCGA-ND-A4WF-01 X 95940099 95940099 C A DIAPH2 Silent p.G14G 0.31 TCGA-NF-A4WU-01 10 23292319 23292319 C T ARMC3 Silent p.N569N 0.17 TCGA-NF-A4WU-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.47 deleterious(0) possibly_damaging(0.479) TCGA-NF-A4WU-01 12 55524043 55524043 G A OR9K2 Missense_Mutation p.R164H 0.25 tolerated(0.22) benign(0.024) TCGA-NF-A4WU-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.31 deleterious(0.05) possibly_damaging(0.789) TCGA-NF-A4WU-01 12 56492632 56492632 G A ERBB3 Missense_Mutation p.E928K 0.26 deleterious(0) probably_damaging(0.999) TCGA-NF-A4WU-01 12 57114545 57114545 A C NACA Missense_Mutation p.S257A 0.54 tolerated_low_confidence(0.12) benign(0.198) TCGA-NF-A4WU-01 14 44976102 44976102 C T FSCB Missense_Mutation p.R30H 0.16 deleterious(0.03) possibly_damaging(0.854) TCGA-NF-A4WU-01 14 51101951 51101951 G A SAV1 Nonsense_Mutation p.R368* 0.38 TCGA-NF-A4WU-01 15 91455346 91455346 G A MAN2A2 Missense_Mutation p.R728H 0.48 tolerated(0.12) benign(0.003) TCGA-NF-A4WU-01 16 2331468 2331468 C T ABCA3 Missense_Mutation p.D1360N 0.09 deleterious(0.04) possibly_damaging(0.686) TCGA-NF-A4WU-01 16 2812318 2812318 A G SRRM2 Missense_Mutation p.R597G 0.28 unknown(0) TCGA-NF-A4WU-01 16 81197274 81197274 G A PKD1L2 RNA 0.28 TCGA-NF-A4WU-01 17 29687566 29687566 C G NF1 Missense_Mutation p.T2741R 0.10 deleterious(0.02) benign(0.04) TCGA-NF-A4WU-01 17 30293184 30293184 G A SUZ12 Silent p.Q158Q 0.20 TCGA-NF-A4WU-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.41 deleterious(0) probably_damaging(1) TCGA-NF-A4WU-01 18 50912508 50912508 G A DCC Missense_Mutation p.D819N 0.41 deleterious(0) possibly_damaging(0.498) TCGA-NF-A4WU-01 19 37643369 37643369 G T ZNF585A Silent p.R423R 0.12 TCGA-NF-A4WU-01 19 50155743 50155743 C T SCAF1 Silent p.F699F 0.24 TCGA-NF-A4WU-01 1 111216299 111216299 G A KCNA3 Missense_Mutation p.S378L 0.32 deleterious(0) probably_damaging(1) TCGA-NF-A4WU-01 1 152128023 152128023 C A RPTN Missense_Mutation p.G518C 0.36 deleterious(0) probably_damaging(0.982) TCGA-NF-A4WU-01 1 159906690 159906690 G A IGSF9 Nonsense_Mutation p.Q137* 0.18 TCGA-NF-A4WU-01 1 17320326 17320326 C A ATP13A2 Missense_Mutation p.G516V 0.25 deleterious(0) probably_damaging(1) TCGA-NF-A4WU-01 1 176738843 176738843 C A PAPPA2 Missense_Mutation p.A1475E 0.34 deleterious(0) probably_damaging(0.999) TCGA-NF-A4WU-01 1 18809452 18809452 C T KLHDC7A Silent p.A659A 0.44 TCGA-NF-A4WU-01 1 216595684 216595685 - A USH2A 5'UTR 0.23 TCGA-NF-A4WU-01 1 247921040 247921042 GGA - OR1C1 In_Frame_Del p.S223del 0.51 TCGA-NF-A4WU-01 2 197184313 197184313 G A HECW2 Missense_Mutation p.A434V 0.28 tolerated_low_confidence(0.72) benign(0.015) TCGA-NF-A4WU-01 3 184019846 184019846 C G PSMD2 Missense_Mutation p.L231V 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-NF-A4WU-01 4 76571563 76571563 A G G3BP2 Missense_Mutation p.F379L 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-NF-A4WU-01 5 10227588 10227588 T G FAM173B Missense_Mutation p.T223P 0.14 tolerated_low_confidence(0.28) benign(0.027) TCGA-NF-A4WU-01 5 1420693 1420693 G A SLC6A3 Silent p.C306C 0.34 TCGA-NF-A4WU-01 6 26104424 26104424 A T HIST1H4C Silent p.T83T 0.19 TCGA-NF-A4WU-01 6 27834840 27834840 C A HIST1H1B Silent p.P156P 0.14 TCGA-NF-A4WU-01 6 29343055 29343055 C T OR12D3 Missense_Mutation p.V4I 0.32 tolerated(0.25) benign(0.001) TCGA-NF-A4WU-01 7 117067469 117067469 C T ASZ1 Missense_Mutation p.E16K 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-NF-A4WU-01 7 21757423 21757423 G A DNAH11 Silent p.R2345R 0.15 TCGA-NF-A4WU-01 7 45003662 45003662 C T MYO1G Missense_Mutation p.V911M 0.21 tolerated(0.16) benign(0.146) TCGA-NF-A4WU-01 7 97488687 97488687 C T ASNS Missense_Mutation p.A171T 0.27 tolerated(0.59) benign(0) TCGA-NF-A4WU-01 9 100403882 100403882 T A NCBP1 Silent p.A54A 0.32 TCGA-NF-A4WU-01 9 109694600 109694600 C T ZNF462 Intron 0.40 TCGA-NF-A4WU-01 9 129453154 129453154 C T LMX1B Silent p.I122I 0.37 TCGA-NF-A4WU-01 X 137717785 137717785 T A FGF13 Missense_Mutation p.E155V 0.28 deleterious(0) probably_damaging(1) TCGA-NF-A4WU-01 X 68382933 68382933 G A PJA1 Missense_Mutation p.T50M 0.26 tolerated(0.09) probably_damaging(0.943) TCGA-NF-A4WX-01 10 26939616 26939616 C A LINC00202-2 RNA 0.11 TCGA-NF-A4WX-01 10 28822965 28822965 T A WAC Splice_Site p.X26_splice 0.15 TCGA-NF-A4WX-01 10 81146031 81146031 G A ZCCHC24 3'UTR 0.50 TCGA-NF-A4WX-01 11 122805248 122805248 C T C11orf63 Nonsense_Mutation p.R367* 0.24 TCGA-NF-A4WX-01 11 5264422 5264422 T A HBG1 3'Flank 0.20 TCGA-NF-A4WX-01 11 5264424 5264424 A G HBG1 3'Flank 0.21 TCGA-NF-A4WX-01 11 55563682 55563682 C T OR5D14 Silent p.L217L 0.16 TCGA-NF-A4WX-01 11 803576 803576 G A PIDD Missense_Mutation p.R103W 0.94 tolerated(0.12) benign(0.001) TCGA-NF-A4WX-01 12 113447177 113447177 A C OAS2 Intron 0.11 TCGA-NF-A4WX-01 13 32929088 32929088 G - BRCA2 Frame_Shift_Del p.T2367Lfs*9 0.29 TCGA-NF-A4WX-01 13 33018126 33018126 G T N4BP2L2 Missense_Mutation p.P183Q 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-NF-A4WX-01 14 24464290 24464290 T C DHRS4L2 Missense_Mutation p.V119A 0.17 tolerated(0.15) benign(0.32) TCGA-NF-A4WX-01 14 89628877 89628877 C A FOXN3 Nonsense_Mutation p.E452* 0.31 TCGA-NF-A4WX-01 15 39893055 39893055 G A FSIP1 3'UTR 1.00 TCGA-NF-A4WX-01 17 37264406 37264406 C T PLXDC1 Missense_Mutation p.D188N 0.09 tolerated(0.12) benign(0.006) TCGA-NF-A4WX-01 17 45911901 45911901 T C LRRC46 Splice_Site p.X75_splice 0.95 TCGA-NF-A4WX-01 17 56492928 56492928 C T RNF43 Missense_Mutation p.G4D 0.98 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-NF-A4WX-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.88 tolerated(0.13) possibly_damaging(0.631) TCGA-NF-A4WX-01 17 80545021 80545021 G T FOXK2 Silent p.P553P 0.09 TCGA-NF-A4WX-01 19 12989503 12989503 G A DNASE2 Silent p.F164F 0.21 TCGA-NF-A4WX-01 19 16860396 16860396 C T NWD1 Missense_Mutation p.R315C 0.25 deleterious(0) probably_damaging(0.997) TCGA-NF-A4WX-01 19 36591677 36591677 G A WDR62 Missense_Mutation p.G923R 0.16 tolerated(0.26) benign(0.048) TCGA-NF-A4WX-01 19 4363847 4363847 C T SH3GL1 Missense_Mutation p.R165H 0.95 deleterious(0) probably_damaging(1) TCGA-NF-A4WX-01 19 4859938 4859938 G A PLIN3 Silent p.H55H 0.33 TCGA-NF-A4WX-01 1 1256383 1256383 T C CPSF3L Missense_Mutation p.N46S 0.29 tolerated(0.2) benign(0.031) TCGA-NF-A4WX-01 1 1386062 1386062 C T ATAD3C 5'UTR 0.46 TCGA-NF-A4WX-01 1 231696874 231696874 G T TSNAX Missense_Mutation p.G123V 0.58 deleterious(0) probably_damaging(0.999) TCGA-NF-A4WX-01 22 20825725 20825725 C T KLHL22 Missense_Mutation p.C102Y 0.14 tolerated(0.07) possibly_damaging(0.686) TCGA-NF-A4WX-01 22 50955912 50955912 G A NCAPH2 Splice_Site p.X89_splice 0.57 TCGA-NF-A4WX-01 2 143798178 143798178 C T KYNU Missense_Mutation p.S408F 0.18 deleterious(0.04) possibly_damaging(0.567) TCGA-NF-A4WX-01 2 160807932 160807932 T C PLA2R1 Silent p.T1153T 0.33 TCGA-NF-A4WX-01 2 171573899 171573899 C T SP5 Silent p.D394D 0.16 TCGA-NF-A4WX-01 2 39050325 39050325 C T DHX57 Missense_Mutation p.R1034H 0.29 tolerated(0.15) benign(0.004) TCGA-NF-A4WX-01 3 130383937 130383937 G A COL6A6 Missense_Mutation p.R2198Q 0.44 tolerated_low_confidence(0.47) benign(0.002) TCGA-NF-A4WX-01 3 39307306 39307306 A C CX3CR1 Missense_Mutation p.L264R 0.07 deleterious(0) probably_damaging(1) TCGA-NF-A4WX-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.63 deleterious(0) probably_damaging(1) TCGA-NF-A4WX-01 4 156784847 156784847 G A ASIC5 Nonsense_Mutation p.R34* 0.23 TCGA-NF-A4WX-01 4 177241254 177241254 C G SPCS3 Missense_Mutation p.N9K 0.42 deleterious(0) probably_damaging(0.997) TCGA-NF-A4WX-01 5 10403623 10403623 C T MARCH6 Silent p.Y434Y 0.57 TCGA-NF-A4WX-01 6 26091203 26091203 C T HFE Nonsense_Mutation p.R71* 0.44 TCGA-NF-A4WX-01 6 41774205 41774205 G - USP49 Frame_Shift_Del p.R173Gfs*20 0.28 TCGA-NF-A4WX-01 7 156447342 156447342 G A RNF32 Missense_Mutation p.R116H 0.10 deleterious(0) probably_damaging(0.911) TCGA-NF-A4WX-01 7 57528634 57528634 C T ZNF716 Missense_Mutation p.T156I 0.15 tolerated(1) benign(0) TCGA-NF-A4WX-01 8 100287482 100287482 G T VPS13B Missense_Mutation p.G942C 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-NF-A4WX-01 8 121531025 121531025 C T MTBP Missense_Mutation p.R860C 0.72 deleterious(0) probably_damaging(0.968) TCGA-NF-A4WX-01 8 18258041 18258041 T A NAT2 Silent p.L176L 0.11 TCGA-NF-A4WX-01 X 133700506 133700506 G A PLAC1 Silent p.H69H 0.94 TCGA-NF-A4X2-01 10 103901271 103901271 G A PPRC1 Silent p.L1002L 0.10 TCGA-NF-A4X2-01 10 119003729 119003729 C T SLC18A2 Silent p.D123D 0.20 TCGA-NF-A4X2-01 10 23003128 23003128 C A PIP4K2A Missense_Mutation p.W43L 0.38 deleterious(0.02) benign(0.162) TCGA-NF-A4X2-01 10 27437875 27437875 T C YME1L1 Missense_Mutation p.H43R 0.65 tolerated_low_confidence(0.4) benign(0.003) TCGA-NF-A4X2-01 10 29843734 29843734 G A SVIL Silent p.S46S 0.53 TCGA-NF-A4X2-01 10 34400456 34400456 C G PARD3 Missense_Mutation p.D1238H 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NF-A4X2-01 10 71874719 71874719 G A AIFM2 Silent p.I309I 0.18 TCGA-NF-A4X2-01 10 89692893 89692893 C A PTEN Missense_Mutation p.A126D 0.62 deleterious(0) probably_damaging(0.988) TCGA-NF-A4X2-01 10 94688101 94688101 C G EXOC6 Missense_Mutation p.D298E 0.27 tolerated(1) benign(0.007) TCGA-NF-A4X2-01 10 95162632 95162632 C A MYOF Missense_Mutation p.V287F 0.20 deleterious(0) possibly_damaging(0.551) TCGA-NF-A4X2-01 11 108385313 108385313 T C EXPH5 Silent p.K307K 0.31 TCGA-NF-A4X2-01 11 65271184 65271184 T G MALAT1 RNA 0.49 TCGA-NF-A4X2-01 11 66444635 66444635 C A RBM4B 5'UTR 0.17 TCGA-NF-A4X2-01 11 74985231 74985231 C A ARRB1 Silent p.T267T 0.12 TCGA-NF-A4X2-01 11 9074741 9074741 G T SCUBE2 Missense_Mutation p.T451K 0.88 tolerated(0.76) benign(0.096) TCGA-NF-A4X2-01 12 110397663 110397663 G A GIT2 Missense_Mutation p.S363L 0.13 tolerated(0.37) benign(0) TCGA-NF-A4X2-01 12 111785693 111785693 C G CUX2 Missense_Mutation p.P1342R 0.21 tolerated_low_confidence(0.09) benign(0.001) TCGA-NF-A4X2-01 12 117703237 117703237 G A NOS1 Missense_Mutation p.R674W 0.50 deleterious(0) probably_damaging(1) TCGA-NF-A4X2-01 13 113488914 113488914 C T ATP11A Missense_Mutation p.T524I 0.19 tolerated(0.29) benign(0.145) TCGA-NF-A4X2-01 13 36242543 36242543 C T NBEA Silent p.T2879T 1.00 TCGA-NF-A4X2-01 13 49775991 49775991 G A FNDC3A Missense_Mutation p.E1015K 0.80 deleterious(0) probably_damaging(0.983) TCGA-NF-A4X2-01 14 42360910 42360910 G T LRFN5 Nonsense_Mutation p.E615* 0.30 TCGA-NF-A4X2-01 15 23303806 23303806 T A HERC2P2 Intron 0.40 TCGA-NF-A4X2-01 15 24922694 24922694 C T NPAP1 Silent p.N560N 0.38 TCGA-NF-A4X2-01 15 69222982 69222982 G A SPESP1 5'UTR 0.37 TCGA-NF-A4X2-01 15 77224706 77224706 A C RCN2 Missense_Mutation p.D50A 0.67 deleterious(0.02) benign(0.008) TCGA-NF-A4X2-01 15 81294956 81294956 T C MESDC1 Missense_Mutation p.L115P 0.14 deleterious(0) possibly_damaging(0.748) TCGA-NF-A4X2-01 16 1251811 1251811 G A CACNA1H Missense_Mutation p.G454D 1.00 deleterious(0) probably_damaging(1) TCGA-NF-A4X2-01 16 1278514 1278514 G A TPSB2 3'UTR 0.29 TCGA-NF-A4X2-01 17 18881910 18881910 C A FAM83G Missense_Mutation p.V357F 0.37 tolerated(0.07) benign(0.016) TCGA-NF-A4X2-01 17 27945807 27945807 C G CORO6 Splice_Site p.X211_splice 0.38 TCGA-NF-A4X2-01 17 6676464 6676464 A G XAF1 Silent p.G294G 0.19 TCGA-NF-A4X2-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 1.00 tolerated(0.13) possibly_damaging(0.631) TCGA-NF-A4X2-01 17 7950683 7950683 A T ALOX15B Missense_Mutation p.N522I 0.21 deleterious(0) benign(0.251) TCGA-NF-A4X2-01 18 14542810 14542810 G T POTEC Missense_Mutation p.S112R 0.42 tolerated(0.32) probably_damaging(0.969) TCGA-NF-A4X2-01 18 25585840 25585840 C A CDH2 Missense_Mutation p.G274W 0.21 deleterious(0) possibly_damaging(0.61) TCGA-NF-A4X2-01 18 34408813 34408813 G T TPGS2 5'UTR 0.12 TCGA-NF-A4X2-01 18 43252989 43252989 G T SLC14A2 Missense_Mutation p.G785V 0.24 deleterious(0) probably_damaging(1) TCGA-NF-A4X2-01 19 17899082 17899082 C T FCHO1 Missense_Mutation p.A884V 0.54 tolerated(0.08) benign(0.002) TCGA-NF-A4X2-01 19 40581487 40581487 G A ZNF780A Missense_Mutation p.R289C 0.38 tolerated(0.19) benign(0.136) TCGA-NF-A4X2-01 19 41111336 41111336 C G LTBP4 Missense_Mutation p.H223Q 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-NF-A4X2-01 19 46274875 46274875 G A DMPK Silent p.V527V 0.25 TCGA-NF-A4X2-01 19 49174007 49174007 G A NTN5 Silent p.S79S 0.63 TCGA-NF-A4X2-01 19 49362194 49362200 GGCGGGG - PLEKHA4 Frame_Shift_Del p.P297Efs*70 0.29 TCGA-NF-A4X2-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.54 deleterious(0) probably_damaging(1) TCGA-NF-A4X2-01 19 57956698 57956698 G T ZNF749 Nonsense_Mutation p.E728* 0.27 TCGA-NF-A4X2-01 19 7743070 7743070 C T C19orf59 Missense_Mutation p.L89F 0.14 tolerated(0.09) probably_damaging(0.969) TCGA-NF-A4X2-01 1 10689685 10689685 C A PEX14 Missense_Mutation p.H259N 0.54 tolerated(1) benign(0.002) TCGA-NF-A4X2-01 1 110210716 110210716 A G GSTM2 5'UTR 0.80 TCGA-NF-A4X2-01 1 15392299 15392299 G A KAZN Intron 0.91 TCGA-NF-A4X2-01 1 158581178 158581178 G T SPTA1 Missense_Mutation p.A2379D 0.10 tolerated(0.11) probably_damaging(0.999) TCGA-NF-A4X2-01 1 162825078 162825078 C T C1orf110 Missense_Mutation p.G129D 0.37 tolerated(0.06) benign(0.03) TCGA-NF-A4X2-01 1 172411608 172411608 A T PIGC Missense_Mutation p.V52E 0.16 deleterious(0) probably_damaging(0.999) TCGA-NF-A4X2-01 1 207499029 207499029 T C CD55 Silent p.L181L 0.25 TCGA-NF-A4X2-01 1 2121073 2121073 A G C1orf86 3'UTR 0.38 TCGA-NF-A4X2-01 1 212964986 212964986 G T NSL1 Nonsense_Mutation p.C40* 0.12 TCGA-NF-A4X2-01 1 231954196 231954196 G C DISC1 Missense_Mutation p.K638N 0.20 deleterious(0) possibly_damaging(0.88) TCGA-NF-A4X2-01 1 235955054 235955055 - TTTT LYST Frame_Shift_Ins p.I1497Kfs*14 0.66 TCGA-NF-A4X2-01 1 248569431 248569431 G A OR2T1 Missense_Mutation p.G46S 0.26 tolerated_low_confidence(1) benign(0) TCGA-NF-A4X2-01 1 27106730 27106730 C A ARID1A Missense_Mutation p.P2114Q 0.29 probably_damaging(0.999) TCGA-NF-A4X2-01 1 40703957 40703957 C T RLF Missense_Mutation p.H1195Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-NF-A4X2-01 1 46725698 46725698 C T RAD54L Missense_Mutation p.P112S 0.52 deleterious(0.01) probably_damaging(1) TCGA-NF-A4X2-01 1 55251777 55251777 C T TTC22 Missense_Mutation p.R300H 0.40 tolerated(0.15) benign(0.039) TCGA-NF-A4X2-01 20 13695536 13695537 - T ESF1 Frame_Shift_Ins p.Q848Afs*14 0.37 TCGA-NF-A4X2-01 20 33764024 33764024 A G PROCR Missense_Mutation p.R126G 0.24 tolerated(0.11) benign(0.075) TCGA-NF-A4X2-01 21 30302792 30302799 AGTGGACA - LTN1 Frame_Shift_Del p.C1804Vfs*3 0.35 TCGA-NF-A4X2-01 22 40711382 40711382 T C TNRC6B Missense_Mutation p.S1592P 0.09 tolerated(1) possibly_damaging(0.621) TCGA-NF-A4X2-01 2 108627055 108627055 T G SLC5A7 Missense_Mutation p.I494S 0.25 deleterious(0) benign(0.027) TCGA-NF-A4X2-01 2 152331526 152331526 T G RIF1 Missense_Mutation p.S2454A 0.12 tolerated(0.07) benign(0.021) TCGA-NF-A4X2-01 2 158272436 158272436 G A CYTIP Missense_Mutation p.T278M 0.21 deleterious(0.02) probably_damaging(0.958) TCGA-NF-A4X2-01 2 163302838 163302838 A T KCNH7 Missense_Mutation p.L415Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-NF-A4X2-01 2 197707534 197707534 A C PGAP1 Silent p.L847L 0.65 TCGA-NF-A4X2-01 2 50765622 50765622 A C NRXN1 Missense_Mutation p.Y678D 0.33 deleterious(0.05) possibly_damaging(0.902) TCGA-NF-A4X2-01 2 71653747 71653747 A T ZNF638 Missense_Mutation p.K1583M 0.18 deleterious(0) probably_damaging(0.929) TCGA-NF-A4X2-01 3 126733148 126733148 C A PLXNA1 Missense_Mutation p.A845D 0.14 tolerated(0.19) benign(0.259) TCGA-NF-A4X2-01 3 132202305 132202305 C G DNAJC13 Silent p.S1022S 0.11 TCGA-NF-A4X2-01 3 137942260 137942260 C T ARMC8 Missense_Mutation p.S61L 0.76 tolerated(0.8) benign(0.341) TCGA-NF-A4X2-01 3 142840559 142840559 C T CHST2 Silent p.L301L 0.19 TCGA-NF-A4X2-01 3 33216515 33216515 C G SUSD5 Missense_Mutation p.R154P 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-NF-A4X2-01 3 46306665 46306665 G C CCR3 Missense_Mutation p.D27H 0.12 deleterious(0.01) benign(0.208) TCGA-NF-A4X2-01 4 149356602 149356602 C A NR3C2 Nonsense_Mutation p.G471* 0.32 TCGA-NF-A4X2-01 4 175649822 175649822 G C GLRA3 Missense_Mutation p.Q99E 0.24 deleterious(0.02) possibly_damaging(0.835) TCGA-NF-A4X2-01 4 87769942 87769943 - C SLC10A6 Frame_Shift_Ins p.T110Hfs*4 0.40 TCGA-NF-A4X2-01 5 109117242 109117242 A G MAN2A1 Missense_Mutation p.Y507C 0.36 deleterious(0) probably_damaging(1) TCGA-NF-A4X2-01 6 160468851 160468851 C T IGF2R Missense_Mutation p.R753W 0.31 deleterious(0) probably_damaging(0.999) TCGA-NF-A4X2-01 6 161507690 161507691 - T MAP3K4 Frame_Shift_Ins p.Y850Lfs*22 0.28 TCGA-NF-A4X2-01 6 31833747 31833747 C T SLC44A4 Missense_Mutation p.V464I 0.35 deleterious(0) probably_damaging(0.96) TCGA-NF-A4X2-01 6 41165846 41165846 C T TREML2 Splice_Site p.X126_splice 0.34 TCGA-NF-A4X2-01 6 45515058 45515058 G A RUNX2 3'UTR 0.33 TCGA-NF-A4X2-01 6 66204707 66204707 G C EYS Missense_Mutation p.S199R 0.17 tolerated(0.49) benign(0.003) TCGA-NF-A4X2-01 6 90432736 90432736 G C MDN1 Missense_Mutation p.P1969A 0.12 probably_damaging(0.925) TCGA-NF-A4X2-01 7 100682628 100682628 C T MUC17 Missense_Mutation p.P2644L 0.19 benign(0.001) TCGA-NF-A4X2-01 7 102760563 102760563 C T NAPEPLD Silent p.T134T 0.44 TCGA-NF-A4X2-01 7 134851483 134851483 C A C7orf49 Silent p.L118L 0.27 TCGA-NF-A4X2-01 7 140043356 140043358 AAA - SLC37A3 In_Frame_Del p.F394del 0.09 TCGA-NF-A4X2-01 7 141955417 141955417 C A PRSS58 Missense_Mutation p.L39F 0.26 tolerated(0.41) benign(0.28) TCGA-NF-A4X2-01 7 26235493 26235493 T C HNRNPA2B1 Missense_Mutation p.Y244C 0.72 tolerated(0.17) unknown(0) TCGA-NF-A4X2-01 7 27203135 27203135 G T HOXA9 3'UTR 0.20 TCGA-NF-A4X2-01 7 47898380 47898380 T G PKD1L1 Missense_Mutation p.E1418A 0.17 deleterious(0.01) benign(0.032) TCGA-NF-A4X2-01 8 100887728 100887728 C - VPS13B Frame_Shift_Del p.S3970Afs*43 0.17 TCGA-NF-A4X2-01 8 104388056 104388056 C G CTHRC1 Missense_Mutation p.P81A 0.12 tolerated(0.12) probably_damaging(1) TCGA-NF-A4X2-01 8 110588205 110588205 G T SYBU Missense_Mutation p.R308S 0.25 deleterious(0) probably_damaging(1) TCGA-NF-A4X2-01 8 139824130 139824130 G T COL22A1 Missense_Mutation p.P454Q 0.55 unknown(0) TCGA-NF-A4X2-01 8 23167294 23167294 G A LOXL2 Silent p.P589P 0.14 TCGA-NF-A4X2-01 8 48614536 48614536 C G SPIDR Missense_Mutation p.R646G 0.15 deleterious(0.01) possibly_damaging(0.69) TCGA-NF-A4X2-01 8 97172606 97172606 G C GDF6 Nonsense_Mutation p.Y105* 0.22 TCGA-NF-A4X2-01 9 113312294 113312294 C A SVEP1 Missense_Mutation p.A208S 0.21 probably_damaging(0.999) TCGA-NF-A4X2-01 9 117068960 117068960 T G COL27A1 Missense_Mutation p.M1700R 0.18 unknown(0) TCGA-NF-A4X2-01 9 119582946 119582946 C T ASTN2 Silent p.T668T 0.91 TCGA-NF-A4X2-01 9 135762851 135762851 C T C9orf9 Silent p.C80C 0.12 TCGA-NF-A4X2-01 9 27949585 27949585 C T LINGO2 Missense_Mutation p.R362H 0.84 deleterious(0) probably_damaging(0.997) TCGA-NF-A4X2-01 9 37776300 37776300 C T TRMT10B Missense_Mutation p.R248W 0.73 tolerated(0.05) benign(0.022) TCGA-NF-A4X2-01 9 73736211 73736211 C A TRPM3 Missense_Mutation p.L20F 0.93 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-NF-A4X2-01 9 96021235 96021245 CCCCCATCACG - WNK2 Frame_Shift_Del p.I804Gfs*116 0.53 TCGA-NF-A4X2-01 X 107225158 107225158 C A TEX13B Missense_Mutation p.C67F 0.90 deleterious(0.01) probably_damaging(0.977) TCGA-NF-A4X2-01 X 26212812 26212812 G A MAGEB6 Silent p.P283P 0.10 TCGA-NF-A4X2-01 X 48673986 48673986 C A HDAC6 Missense_Mutation p.Q421K 0.20 tolerated(0.56) benign(0.002) TCGA-NF-A4X2-01 X 49142813 49142813 C T PPP1R3F Missense_Mutation p.T554M 0.72 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-NF-A4X2-01 X 71350291 71350291 C A RGAG4 Missense_Mutation p.R367M 0.25 deleterious_low_confidence(0) possibly_damaging(0.846) TCGA-NF-A4X2-01 X 7811258 7811258 C T VCX Missense_Mutation p.P5L 0.10 deleterious_low_confidence(0.04) unknown(0) TCGA-NF-A4X2-01 X 99917215 99917215 C T SRPX2 Missense_Mutation p.A69V 0.10 tolerated(0.85) benign(0.072) TCGA-NF-A5CP-01 10 115981160 115981160 G T TDRD1 Missense_Mutation p.D939Y 0.47 deleterious(0) benign(0.176) TCGA-NF-A5CP-01 10 127464289 127464289 C T MMP21 Silent p.S34S 0.29 TCGA-NF-A5CP-01 10 89624296 89624296 G C PTEN Missense_Mutation p.D24H 0.39 deleterious(0) probably_damaging(0.972) TCGA-NF-A5CP-01 11 104822679 104822679 G A CASP4 Missense_Mutation p.L106F 0.33 deleterious(0.02) benign(0.423) TCGA-NF-A5CP-01 11 134009765 134009765 A G JAM3 Silent p.V32V 0.59 TCGA-NF-A5CP-01 11 71954958 71954958 C T PHOX2A Missense_Mutation p.G31S 0.27 tolerated(1) possibly_damaging(0.862) TCGA-NF-A5CP-01 12 117723945 117723945 C T NOS1 Silent p.S418S 0.38 TCGA-NF-A5CP-01 12 57572304 57572304 C T LRP1 Silent p.T1508T 0.17 TCGA-NF-A5CP-01 12 6472683 6472683 G C SCNN1A Missense_Mutation p.R263G 0.70 tolerated(0.11) probably_damaging(0.951) TCGA-NF-A5CP-01 12 70933604 70933604 T C PTPRB Intron 0.41 TCGA-NF-A5CP-01 13 42763366 42763366 C G DGKH Silent p.A611A 0.26 TCGA-NF-A5CP-01 13 51825708 51825708 C A FAM124A Missense_Mutation p.L105M 0.23 deleterious(0) probably_damaging(0.998) TCGA-NF-A5CP-01 13 53422054 53422054 C T PCDH8 Missense_Mutation p.R173H 0.29 tolerated(0.19) benign(0.029) TCGA-NF-A5CP-01 13 75884163 75884163 T C TBC1D4 Silent p.S836S 0.46 TCGA-NF-A5CP-01 13 79911276 79911276 A C RBM26 Missense_Mutation p.F871L 0.29 deleterious(0.01) possibly_damaging(0.672) TCGA-NF-A5CP-01 14 19377911 19377911 C - OR11H12 Frame_Shift_Del p.N106Kfs*25 0.22 TCGA-NF-A5CP-01 15 43820144 43820144 G A MAP1A Missense_Mutation p.R2158Q 0.50 possibly_damaging(0.888) TCGA-NF-A5CP-01 15 79066537 79066537 C T ADAMTS7 Missense_Mutation p.R661Q 0.20 deleterious(0) possibly_damaging(0.854) TCGA-NF-A5CP-01 16 2816009 2816009 G A SRRM2 Missense_Mutation p.R1827Q 0.18 unknown(0) TCGA-NF-A5CP-01 16 28331566 28331566 G A SBK1 Missense_Mutation p.R200H 0.55 deleterious(0.04) benign(0.363) TCGA-NF-A5CP-01 17 29701048 29701048 G A NF1 Missense_Mutation p.V2799I 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.854) TCGA-NF-A5CP-01 17 55927389 55927389 G A MRPS23 5'UTR 0.29 TCGA-NF-A5CP-01 17 72541016 72541016 G A CD300C Silent p.R44R 0.46 TCGA-NF-A5CP-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.85 deleterious(0) probably_damaging(1) TCGA-NF-A5CP-01 17 77709178 77709178 G A ENPP7 Missense_Mutation p.D246N 0.07 deleterious(0) probably_damaging(1) TCGA-NF-A5CP-01 17 79974988 79974988 G A ASPSCR1 Silent p.P643P 0.35 TCGA-NF-A5CP-01 18 43526694 43526694 G A EPG5 Missense_Mutation p.R538W 0.27 tolerated(0.24) benign(0) TCGA-NF-A5CP-01 18 56204502 56204502 C T ALPK2 Missense_Mutation p.A973T 0.07 tolerated(0.12) benign(0.048) TCGA-NF-A5CP-01 19 17337954 17337954 G C OCEL1 Missense_Mutation p.G133A 0.07 tolerated(0.28) benign(0.01) TCGA-NF-A5CP-01 19 38056900 38056900 A G ZNF571 Missense_Mutation p.C144R 0.10 deleterious(0) benign(0.292) TCGA-NF-A5CP-01 19 57089191 57089191 G A ZNF470 Missense_Mutation p.R465H 0.34 tolerated(0.9) benign(0.181) TCGA-NF-A5CP-01 19 59063715 59063716 AC - CHMP2A Frame_Shift_Del p.S87Pfs*43 0.24 TCGA-NF-A5CP-01 1 115143531 115143531 G A DENND2C Silent p.Y622Y 0.36 TCGA-NF-A5CP-01 1 156841545 156841545 C A NTRK1 Missense_Mutation p.S283Y 0.11 tolerated(1) probably_damaging(0.988) TCGA-NF-A5CP-01 1 235969411 235969411 G C LYST Missense_Mutation p.Q1009E 0.41 tolerated_low_confidence(0.33) benign(0.036) TCGA-NF-A5CP-01 1 247614475 247614475 G A OR2B11 Silent p.Y270Y 0.08 TCGA-NF-A5CP-01 1 27057848 27057848 C - ARID1A Frame_Shift_Del p.Q520Sfs*99 0.25 TCGA-NF-A5CP-01 1 27106527 27106528 - GAGT ARID1A Frame_Shift_Ins p.W2048* 0.39 TCGA-NF-A5CP-01 21 45753071 45753071 C T C21orf2 Missense_Mutation p.R73H 0.34 tolerated(0.08) benign(0.142) TCGA-NF-A5CP-01 22 29092971 29092971 A C CHEK2 Missense_Mutation p.L381R 0.26 deleterious(0) probably_damaging(0.998) TCGA-NF-A5CP-01 2 128938646 128938646 G C UGGT1 Missense_Mutation p.Q1361H 0.38 deleterious(0) probably_damaging(0.999) TCGA-NF-A5CP-01 2 164467497 164467497 G T FIGN Missense_Mutation p.P282H 0.45 deleterious(0.03) possibly_damaging(0.562) TCGA-NF-A5CP-01 2 169995843 169995843 C T LRP2 Missense_Mutation p.V4436I 0.07 benign(0.004) TCGA-NF-A5CP-01 2 215815735 215815735 C G ABCA12 Missense_Mutation p.E2240D 0.46 deleterious(0) probably_damaging(0.997) TCGA-NF-A5CP-01 2 220421348 220421348 G A OBSL1 Silent p.A1388A 0.30 TCGA-NF-A5CP-01 2 224831613 224831613 A G MRPL44 Silent p.E287E 0.27 TCGA-NF-A5CP-01 2 62067002 62067002 A G FAM161A Silent p.Y379Y 0.53 TCGA-NF-A5CP-01 3 119013766 119013766 T A ARHGAP31 Silent p.G5G 0.10 TCGA-NF-A5CP-01 3 157815755 157815755 C T SHOX2 3'UTR 0.24 TCGA-NF-A5CP-01 3 173322294 173322294 C T NLGN1 5'UTR 0.19 TCGA-NF-A5CP-01 3 178916936 178916936 G A PIK3CA Missense_Mutation p.R108H 0.61 deleterious(0.03) probably_damaging(0.983) TCGA-NF-A5CP-01 3 47451557 47451557 C T PTPN23 Nonsense_Mutation p.R757* 0.18 TCGA-NF-A5CP-01 4 107230128 107230128 C T TBCK 5'UTR 0.78 TCGA-NF-A5CP-01 4 83793139 83793139 C A SEC31A Missense_Mutation p.R247L 0.76 deleterious(0) possibly_damaging(0.778) TCGA-NF-A5CP-01 4 88584263 88584263 G A DMP1 Missense_Mutation p.E445K 0.80 tolerated(0.14) unknown(0) TCGA-NF-A5CP-01 6 160858039 160858039 G A SLC22A3 Missense_Mutation p.A362T 0.09 deleterious(0.03) probably_damaging(1) TCGA-NF-A5CP-01 6 29641083 29641083 G A ZFP57 Missense_Mutation p.R269W 0.32 deleterious(0) probably_damaging(1) TCGA-NF-A5CP-01 6 31913052 31913052 G C C2 Missense_Mutation p.R726P 0.28 deleterious(0) probably_damaging(1) TCGA-NF-A5CP-01 6 32609250 32609250 G A HLA-DQA1 Silent p.P82P 0.45 TCGA-NF-A5CP-01 6 33383699 33383699 C T PHF1 Missense_Mutation p.R510C 0.34 tolerated(0.19) possibly_damaging(0.876) TCGA-NF-A5CP-01 6 7580595 7580595 A G DSP Missense_Mutation p.Y1391C 0.37 possibly_damaging(0.873) TCGA-NF-A5CP-01 6 97246772 97246772 T A GPR63 Missense_Mutation p.Y279F 0.22 tolerated(0.06) benign(0.356) TCGA-NF-A5CP-01 7 154863078 154863078 G A HTR5A Missense_Mutation p.V157I 0.36 tolerated(0.51) benign(0.001) TCGA-NF-A5CP-01 7 44185169 44185169 G A GCK Missense_Mutation p.R395C 0.29 deleterious(0) probably_damaging(0.941) TCGA-NF-A5CP-01 7 72657505 72657505 G A GTF2IRD2P1 RNA 0.07 TCGA-NF-A5CP-01 7 86468552 86468552 C T GRM3 Silent p.D574D 0.38 TCGA-NF-A5CP-01 8 100865978 100865978 T G VPS13B Missense_Mutation p.I3479S 0.88 tolerated(0.41) benign(0) TCGA-NF-A5CP-01 8 10470756 10470756 C T RP1L1 Silent p.P284P 0.09 TCGA-NF-A5CP-01 8 104955062 104955062 C T RIMS2 Missense_Mutation p.T870M 0.16 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-NF-A5CP-01 8 132980594 132980594 G A EFR3A Missense_Mutation p.R303H 0.20 tolerated(0.3) benign(0.001) TCGA-NF-A5CP-01 9 134385763 134385763 C T POMT1 Silent p.H294H 0.43 TCGA-NF-A5CP-01 X 103497474 103497474 T A ESX1 Missense_Mutation p.D181V 0.32 tolerated(0.5) possibly_damaging(0.782) TCGA-NF-A5CP-01 X 108911498 108911498 G A ACSL4 Silent p.L424L 0.49 TCGA-NF-A5CP-01 X 151899865 151899865 C T MAGEA12 Silent p.G312G 0.45 TCGA-NF-A5CP-01 X 152713287 152713287 C T TREX2 5'UTR 0.31 TCGA-NF-A5CP-01 X 153175625 153175625 C T ARHGAP4 Missense_Mutation p.G759E 0.49 tolerated(0.13) possibly_damaging(0.616) TCGA-NF-A5CP-01 X 30236752 30236752 C T MAGEB2 Nonsense_Mutation p.R19* 0.39 TCGA-NF-A5CP-01 X 31525450 31525450 C G DMD Missense_Mutation p.D2780H 0.42 probably_damaging(0.934) TCGA-NF-A5CP-01 X 49958838 49958838 G A AKAP4 Missense_Mutation p.R176C 0.35 tolerated(0.06) benign(0.005) TCGA-NF-A5CP-01 X 70338671 70338671 G T MED12 Missense_Mutation p.D23Y 0.40 probably_damaging(0.998) TCGA-NF-A5CP-01 X 72433770 72433770 C T NAP1L2 Missense_Mutation p.G187S 0.10 tolerated(0.27) benign(0.357) TCGA-NF-A5CP-01 X 78216443 78216443 A T P2RY10 Missense_Mutation p.R142S 0.08 tolerated(0.26) probably_damaging(0.958) TCGA-NG-A4VU-01 10 5436259 5436259 C T TUBAL3 Missense_Mutation p.V188M 0.61 deleterious_low_confidence(0.02) probably_damaging(0.948) TCGA-NG-A4VU-01 11 4967462 4967462 G A OR51A4 Missense_Mutation p.P290L 0.10 deleterious(0.01) possibly_damaging(0.818) TCGA-NG-A4VU-01 12 49488228 49488228 C T DHH Missense_Mutation p.C23Y 0.48 deleterious(0) probably_damaging(0.951) TCGA-NG-A4VU-01 14 21423973 21423973 C T RNASE2 Silent p.L15L 0.22 TCGA-NG-A4VU-01 17 40557062 40557062 C T PTRF Silent p.K272K 0.47 TCGA-NG-A4VU-01 17 7129436 7129436 C G DVL2 Silent p.G653G 0.88 TCGA-NG-A4VU-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.98 tolerated(0.11) benign(0.308) TCGA-NG-A4VU-01 19 14090342 14090342 G A RFX1 Nonsense_Mutation p.Q251* 0.56 TCGA-NG-A4VU-01 19 32973194 32973196 ATG - DPY19L3 3'UTR 0.25 TCGA-NG-A4VU-01 19 34003603 34003603 G C PEPD Missense_Mutation p.R33G 0.18 tolerated(0.15) possibly_damaging(0.56) TCGA-NG-A4VU-01 19 41216006 41216006 C T ADCK4 Missense_Mutation p.E109K 0.47 deleterious(0) probably_damaging(0.999) TCGA-NG-A4VU-01 19 42091840 42091840 C G CEACAM21 Missense_Mutation p.S281C 0.39 tolerated(0.12) possibly_damaging(0.621) TCGA-NG-A4VU-01 19 47424519 47424519 C T ARHGAP35 Missense_Mutation p.R863C 0.38 deleterious(0) probably_damaging(0.999) TCGA-NG-A4VU-01 19 52723052 52723052 G A PPP2R1A Missense_Mutation p.E413K 0.38 deleterious(0.03) benign(0.027) TCGA-NG-A4VU-01 1 103453188 103453188 C A COL11A1 Splice_Site p.X834_splice 0.24 TCGA-NG-A4VU-01 1 104297191 104297191 C T AMY1C Nonsense_Mutation p.Q317* 0.20 TCGA-NG-A4VU-01 1 145293414 145293414 A G NBPF10 Silent p.V3V 0.03 TCGA-NG-A4VU-01 1 154315408 154315408 A G ATP8B2 Missense_Mutation p.H508R 0.45 deleterious(0) possibly_damaging(0.609) TCGA-NG-A4VU-01 1 17270624 17270624 A G CROCC Missense_Mutation p.Q613R 0.19 possibly_damaging(0.885) TCGA-NG-A4VU-01 1 207110846 207110846 G A PIGR Silent p.S213S 0.24 TCGA-NG-A4VU-01 1 243305676 243305676 C T CEP170 Missense_Mutation p.S1334N 0.16 deleterious(0) probably_damaging(0.998) TCGA-NG-A4VU-01 22 24656885 24656885 G A POM121L9P RNA 0.29 TCGA-NG-A4VU-01 22 29754889 29754889 C T AP1B1 Silent p.K117K 0.38 TCGA-NG-A4VU-01 22 36919950 36919950 C T EIF3D Silent p.Q128Q 0.56 TCGA-NG-A4VU-01 2 137917826 137917826 G A THSD7B Silent p.P471P 0.44 TCGA-NG-A4VU-01 2 37230808 37230808 T C HEATR5B Missense_Mutation p.S1643G 0.30 deleterious(0) benign(0.038) TCGA-NG-A4VU-01 2 74329129 74329129 G C TET3 Missense_Mutation p.K1603N 0.39 tolerated(0.09) possibly_damaging(0.579) TCGA-NG-A4VU-01 2 89459332 89459332 C T IGKV6-21 Missense_Mutation p.S82N 0.22 deleterious(0) probably_damaging(0.995) TCGA-NG-A4VU-01 3 4716886 4716886 G A ITPR1 Silent p.A896A 0.38 TCGA-NG-A4VU-01 3 8809318 8809318 C T OXTR Missense_Mutation p.D186N 0.52 deleterious(0) probably_damaging(0.964) TCGA-NG-A4VU-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.44 deleterious(0) probably_damaging(1) TCGA-NG-A4VU-01 4 169825035 169825035 C T PALLD Missense_Mutation p.T867I 0.38 deleterious(0.01) probably_damaging(0.971) TCGA-NG-A4VU-01 5 140532009 140532009 C T PCDHB6 Missense_Mutation p.S724L 0.07 tolerated(0.1) benign(0.04) TCGA-NG-A4VU-01 5 147281275 147281275 G A C5orf46 Silent p.D44D 0.33 TCGA-NG-A4VU-01 5 178557078 178557078 C A ADAMTS2 Missense_Mutation p.G771V 0.92 deleterious(0) probably_damaging(0.999) TCGA-NG-A4VU-01 5 179301924 179301924 C T TBC1D9B Missense_Mutation p.E722K 0.93 deleterious(0) probably_damaging(0.995) TCGA-NG-A4VU-01 6 30647013 30647013 G A PPP1R18 Silent p.L589L 0.33 TCGA-NG-A4VU-01 6 70070975 70070975 G C BAI3 Missense_Mutation p.L1270F 0.38 tolerated(0.07) benign(0.231) TCGA-NG-A4VU-01 7 138394427 138394427 C G ATP6V0A4 Missense_Mutation p.A791P 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-NG-A4VU-01 8 30924601 30924601 G T WRN Missense_Mutation p.G186V 1.00 deleterious(0.01) benign(0.303) TCGA-NG-A4VU-01 8 81888665 81888665 C T PAG1 3'UTR 0.31 TCGA-NG-A4VU-01 9 135487643 135487643 C T DDX31 Splice_Site p.X714_splice 0.54 TCGA-NG-A4VU-01 9 26919455 26919455 C T PLAA Missense_Mutation p.D424N 0.34 deleterious(0) possibly_damaging(0.697) TCGA-NG-A4VU-01 9 32550878 32550878 C A TOPORS Missense_Mutation p.S31I 0.42 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-NG-A4VU-01 9 88593281 88593281 G A NAA35 Missense_Mutation p.D288N 0.38 tolerated(0.63) benign(0.012) TCGA-NG-A4VU-01 X 141291113 141291113 C G MAGEC2 Missense_Mutation p.D221H 0.85 deleterious(0.04) probably_damaging(0.98) TCGA-NG-A4VU-01 X 53106952 53106952 G C GPR173 3'UTR 0.88 TCGA-NG-A4VW-01 10 105793951 105793951 C T COL17A1 Missense_Mutation p.R1303Q 0.19 unknown(0) TCGA-NG-A4VW-01 10 87628820 87628820 G A GRID1 Missense_Mutation p.R300C 0.13 deleterious(0) probably_damaging(0.93) TCGA-NG-A4VW-01 10 89653815 89653815 C T PTEN Missense_Mutation p.P38L 0.11 deleterious(0) probably_damaging(0.997) TCGA-NG-A4VW-01 10 89692792 89692792 C A PTEN Missense_Mutation p.D92E 0.29 deleterious(0) probably_damaging(0.996) TCGA-NG-A4VW-01 11 57099304 57099304 G A SSRP1 Missense_Mutation p.P354L 0.13 deleterious(0) probably_damaging(1) TCGA-NG-A4VW-01 11 71155948 71155948 G A DHCR7 Silent p.G17G 0.15 TCGA-NG-A4VW-01 11 74687936 74687936 A G SPCS2 Missense_Mutation p.I177V 0.14 tolerated(0.52) benign(0.268) TCGA-NG-A4VW-01 12 50358866 50358866 G A AQP5 Missense_Mutation p.R235H 0.16 deleterious(0) probably_damaging(0.948) TCGA-NG-A4VW-01 12 52882314 52882314 C T KRT6A Missense_Mutation p.A408T 0.12 deleterious(0.02) probably_damaging(0.966) TCGA-NG-A4VW-01 12 57109734 57109734 G A NACA Silent p.V707V 0.11 TCGA-NG-A4VW-01 12 71918242 71918242 A G LGR5 Missense_Mutation p.Y114C 0.13 tolerated(0.09) possibly_damaging(0.838) TCGA-NG-A4VW-01 12 92821902 92821902 G A CLLU1OS Silent p.N7N 0.13 TCGA-NG-A4VW-01 13 48916759 48916759 G T RB1 Nonsense_Mutation p.E97* 0.16 TCGA-NG-A4VW-01 15 71185153 71185153 C - LRRC49 5'UTR 0.12 TCGA-NG-A4VW-01 15 74623364 74623364 C T CCDC33 Nonsense_Mutation p.Q530* 0.21 TCGA-NG-A4VW-01 15 75684736 75684736 G A SIN3A Nonsense_Mutation p.Q900* 0.23 TCGA-NG-A4VW-01 16 1033825 1033825 C T SOX8 Missense_Mutation p.R174W 0.15 deleterious(0) probably_damaging(0.999) TCGA-NG-A4VW-01 16 2013186 2013186 C A RPS2 Missense_Mutation p.Q113H 0.38 deleterious(0) probably_damaging(0.991) TCGA-NG-A4VW-01 17 30179976 30179976 A G COPRS Silent p.F80F 0.14 TCGA-NG-A4VW-01 17 34073283 34073283 G A GAS2L2 Silent p.L411L 0.15 TCGA-NG-A4VW-01 17 6023654 6023654 C T WSCD1 Silent p.Y467Y 0.15 TCGA-NG-A4VW-01 17 66873704 66873704 G A ABCA8 Silent p.A1345A 0.15 TCGA-NG-A4VW-01 18 12725487 12725487 G A PSMG2 Nonsense_Mutation p.W251* 0.19 TCGA-NG-A4VW-01 19 14000258 14000258 C T C19orf57 Missense_Mutation p.E471K 0.13 tolerated(0.39) possibly_damaging(0.81) TCGA-NG-A4VW-01 19 49253880 49253880 C T FUT1 Missense_Mutation p.R220H 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-NG-A4VW-01 1 154988215 154988215 A G ZBTB7B Missense_Mutation p.K394R 0.13 deleterious(0.01) possibly_damaging(0.882) TCGA-NG-A4VW-01 1 154988223 154988223 C T ZBTB7B Missense_Mutation p.R397C 0.48 deleterious(0) probably_damaging(0.983) TCGA-NG-A4VW-01 1 169821955 169821955 G A C1orf112 Missense_Mutation p.E797K 0.13 tolerated(0.05) benign(0.363) TCGA-NG-A4VW-01 1 193070293 193070293 G T GLRX2 Missense_Mutation p.T55K 0.10 deleterious(0.02) benign(0.248) TCGA-NG-A4VW-01 1 200880764 200880764 C A C1orf106 Missense_Mutation p.H381Q 0.10 deleterious(0.02) possibly_damaging(0.68) TCGA-NG-A4VW-01 1 207790017 207790017 C T CR1 Silent p.C2253C 0.37 TCGA-NG-A4VW-01 1 24390563 24390563 G A MYOM3 Silent p.D1207D 0.14 TCGA-NG-A4VW-01 1 3712623 3712623 G T LRRC47 Silent p.R140R 0.31 TCGA-NG-A4VW-01 20 35317150 35317150 A G NDRG3 Missense_Mutation p.V44A 0.14 deleterious(0.03) possibly_damaging(0.629) TCGA-NG-A4VW-01 2 219747080 219747080 G A WNT10A Missense_Mutation p.R104H 0.12 deleterious(0) probably_damaging(0.998) TCGA-NG-A4VW-01 2 42522396 42522396 T G EML4 Missense_Mutation p.F450L 0.15 deleterious(0) probably_damaging(0.972) TCGA-NG-A4VW-01 2 98999903 98999903 G A CNGA3 Missense_Mutation p.E150K 0.19 tolerated(0.87) benign(0) TCGA-NG-A4VW-01 3 111797605 111797605 C T TMPRSS7 Silent p.L621L 0.23 TCGA-NG-A4VW-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-NG-A4VW-01 3 52395770 52395770 G A DNAH1 Silent p.A1656A 0.10 TCGA-NG-A4VW-01 4 159573042 159573042 A C RXFP1 Missense_Mutation p.K703N 0.12 deleterious(0.05) benign(0.003) TCGA-NG-A4VW-01 4 71021774 71021774 C T C4orf40 Missense_Mutation p.R19W 0.18 deleterious(0.04) probably_damaging(0.942) TCGA-NG-A4VW-01 5 140699511 140699511 G A TAF7 Missense_Mutation p.S34F 0.16 deleterious(0) probably_damaging(0.972) TCGA-NG-A4VW-01 5 150436454 150436454 G A TNIP1 Missense_Mutation p.T167M 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-NG-A4VW-01 6 136599647 136599647 T G BCLAF1 Missense_Mutation p.R124S 0.06 tolerated_low_confidence(0.24) unknown(0) TCGA-NG-A4VW-01 6 144508650 144508650 C T STX11 3'UTR 0.14 TCGA-NG-A4VW-01 6 6266846 6266847 - C F13A1 Frame_Shift_Ins p.T173Nfs*18 0.13 TCGA-NG-A4VW-01 7 100281657 100281657 C T GIGYF1 Silent p.A618A 0.14 TCGA-NG-A4VW-01 7 101747648 101747648 C T CUX1 Nonsense_Mutation p.R158* 0.20 TCGA-NG-A4VW-01 7 2265126 2265126 C - MAD1L1 Frame_Shift_Del p.M72Cfs*5 0.13 TCGA-NG-A4VW-01 7 43477687 43477687 G A HECW1 Missense_Mutation p.R296H 0.13 deleterious(0) probably_damaging(1) TCGA-NG-A4VW-01 7 87148697 87148697 G A ABCB1 Missense_Mutation p.R958W 0.21 deleterious(0) benign(0.023) TCGA-NG-A4VW-01 8 41518979 41518979 C T ANK1 Intron 0.31 TCGA-NG-A4VW-01 9 127300415 127300415 G A NR6A1 Silent p.A260A 0.14 TCGA-NG-A4VW-01 9 137653812 137653812 C T COL5A1 Silent p.D659D 0.19 TCGA-NG-A4VW-01 9 84207940 84207943 CAGA - TLE1 Frame_Shift_Del p.C526* 0.13 TCGA-NG-A4VW-01 X 118893526 118893526 C T SOWAHD Missense_Mutation p.A299V 0.21 tolerated(0.27) benign(0.005) TCGA-NG-A4VW-01 X 1414328 1414328 G C CSF2RA Missense_Mutation p.Q263H 0.19 tolerated(0.1) benign(0.264) TCGA-NG-A4VW-01 X 153578523 153578523 G A FLNA Silent p.D2403D 0.19 TCGA-NG-A4VW-01 X 153592412 153592412 C G FLNA Missense_Mutation p.S753T 0.21 tolerated(0.06) benign(0.028) TCGA-NG-A4VW-01 X 71349631 71349631 G A RGAG4 3'UTR 0.22 TCGA-QM-A5NM-01 10 89624275 89624275 C T PTEN Nonsense_Mutation p.Q17* 0.47 TCGA-QM-A5NM-01 10 89720780 89720780 A - PTEN Frame_Shift_Del p.N311Mfs*6 0.28 TCGA-QM-A5NM-01 11 14535162 14535162 T C PSMA1 Silent p.Q172Q 0.53 TCGA-QM-A5NM-01 11 55587891 55587891 G T OR5D18 Silent p.V262V 0.55 TCGA-QM-A5NM-01 12 110454197 110454197 C T ANKRD13A Missense_Mutation p.P120L 0.67 deleterious(0) possibly_damaging(0.9) TCGA-QM-A5NM-01 12 4855406 4855406 C T GALNT8 Silent p.N385N 0.39 TCGA-QM-A5NM-01 12 95602757 95602757 G A FGD6 Missense_Mutation p.A768V 0.20 tolerated(0.07) benign(0.027) TCGA-QM-A5NM-01 14 106174357 106174357 G T IGHA1 Missense_Mutation p.N144K 0.43 deleterious(0.01) possibly_damaging(0.751) TCGA-QM-A5NM-01 14 45590702 45590702 G A FKBP3 Missense_Mutation p.T147I 0.11 deleterious(0) possibly_damaging(0.821) TCGA-QM-A5NM-01 14 52520497 52520497 G A NID2 Missense_Mutation p.T410I 0.41 tolerated(0.18) benign(0.027) TCGA-QM-A5NM-01 14 61180412 61180412 C T SIX4 Missense_Mutation p.E687K 0.63 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-QM-A5NM-01 15 83455920 83455920 C T FSD2 Missense_Mutation p.V75I 0.16 tolerated(0.16) benign(0.159) TCGA-QM-A5NM-01 16 23700935 23700935 C T PLK1 Missense_Mutation p.R516C 0.41 deleterious(0) probably_damaging(1) TCGA-QM-A5NM-01 16 28118920 28118920 C G XPO6 Missense_Mutation p.R807P 0.17 deleterious(0) possibly_damaging(0.586) TCGA-QM-A5NM-01 16 32890604 32890604 C G SLC6A10P RNA 0.67 TCGA-QM-A5NM-01 17 1563731 1563731 A G PRPF8 Missense_Mutation p.C1594R 0.93 deleterious(0.01) possibly_damaging(0.877) TCGA-QM-A5NM-01 17 39914009 39914009 G C JUP Missense_Mutation p.Q601E 1.00 tolerated(0.08) benign(0.054) TCGA-QM-A5NM-01 17 7577557 7577557 A T TP53 Missense_Mutation p.C242S 0.95 deleterious(0) probably_damaging(1) TCGA-QM-A5NM-01 18 61449729 61449729 G T SERPINB7 Silent p.L41L 0.22 TCGA-QM-A5NM-01 19 13409679 13409679 C T CACNA1A Missense_Mutation p.G923D 0.61 possibly_damaging(0.778) TCGA-QM-A5NM-01 19 19216533 19216533 G A SLC25A42 Missense_Mutation p.G126E 0.44 tolerated(0.37) benign(0.008) TCGA-QM-A5NM-01 19 34263305 34263305 T C CHST8 Silent p.N204N 0.44 TCGA-QM-A5NM-01 19 39826665 39826665 A G GMFG 5'UTR 0.33 TCGA-QM-A5NM-01 19 47996757 47996757 G T NAPA Intron 0.18 TCGA-QM-A5NM-01 19 52716084 52716084 C A PPP2R1A Missense_Mutation p.Q217K 0.46 deleterious(0) possibly_damaging(0.703) TCGA-QM-A5NM-01 19 54219926 54219926 C T MIR521-2 RNA 0.45 TCGA-QM-A5NM-01 19 8196507 8196507 C T FBN3 Missense_Mutation p.E641K 0.47 deleterious(0.01) probably_damaging(0.978) TCGA-QM-A5NM-01 19 8486873 8486873 C T MARCH2 Missense_Mutation p.T50I 0.24 deleterious(0) possibly_damaging(0.642) TCGA-QM-A5NM-01 1 182829308 182829308 G T DHX9 Missense_Mutation p.V441L 0.32 tolerated(0.22) benign(0.251) TCGA-QM-A5NM-01 1 204237436 204237436 G C PLEKHA6 Missense_Mutation p.T36S 0.52 tolerated(1) benign(0.001) TCGA-QM-A5NM-01 1 205031674 205031674 C T CNTN2 Missense_Mutation p.A406V 0.51 deleterious(0) possibly_damaging(0.457) TCGA-QM-A5NM-01 1 22138925 22138925 C T LDLRAD2 5'UTR 0.44 TCGA-QM-A5NM-01 20 18477788 18477788 C T RBBP9 Silent p.V8V 0.07 TCGA-QM-A5NM-01 20 19955931 19955931 C A RIN2 Missense_Mutation p.P470Q 0.19 tolerated(0.29) benign(0.028) TCGA-QM-A5NM-01 20 2377168 2377168 G T TGM6 Silent p.L147L 0.12 TCGA-QM-A5NM-01 20 54824623 54824623 G C MC3R Missense_Mutation p.V242L 0.81 tolerated(0.18) benign(0.107) TCGA-QM-A5NM-01 20 61637712 61637712 G A BHLHE23 Silent p.L123L 0.10 TCGA-QM-A5NM-01 21 19732106 19732106 T A TMPRSS15 Missense_Mutation p.Y283F 0.26 tolerated(0.26) benign(0.439) TCGA-QM-A5NM-01 21 46032537 46032537 A C KRTAP10-8 Missense_Mutation p.I174L 0.42 tolerated(0.07) unknown(0) TCGA-QM-A5NM-01 22 50898502 50898502 T C SBF1 Missense_Mutation p.R1124G 0.92 deleterious(0) probably_damaging(0.92) TCGA-QM-A5NM-01 2 210559085 210559085 A G MAP2 Missense_Mutation p.I731V 0.20 deleterious(0) probably_damaging(0.998) TCGA-QM-A5NM-01 2 97779399 97779399 G T ANKRD36 5'UTR 0.10 TCGA-QM-A5NM-01 3 3143448 3143448 G A IL5RA Missense_Mutation p.R99W 0.45 deleterious(0) probably_damaging(0.972) TCGA-QM-A5NM-01 4 151504556 151504556 G A MAB21L2 Silent p.A125A 0.27 TCGA-QM-A5NM-01 4 47682239 47682239 C T CORIN Missense_Mutation p.G351R 0.67 tolerated(0.07) probably_damaging(0.999) TCGA-QM-A5NM-01 5 121759376 121759376 A C SNCAIP Missense_Mutation p.Y315S 0.15 tolerated(0.13) benign(0.005) TCGA-QM-A5NM-01 5 150923476 150923476 A C FAT2 Missense_Mutation p.I2404M 0.16 benign(0.148) TCGA-QM-A5NM-01 5 161277800 161277800 A T GABRA1 Splice_Site 0.19 TCGA-QM-A5NM-01 5 169267840 169267840 G A DOCK2 Missense_Mutation p.R928Q 0.20 tolerated(0.06) possibly_damaging(0.556) TCGA-QM-A5NM-01 5 639302 639302 C T CEP72 Silent p.G435G 0.11 TCGA-QM-A5NM-01 6 116833169 116833169 A T FAM26E Missense_Mutation p.T104S 0.27 tolerated(0.27) benign(0.038) TCGA-QM-A5NM-01 6 127797193 127797193 G A SOGA3 Missense_Mutation p.R660W 0.19 deleterious(0) probably_damaging(1) TCGA-QM-A5NM-01 6 138483289 138483289 G T KIAA1244 Missense_Mutation p.E22D 0.62 tolerated(0.69) benign(0.009) TCGA-QM-A5NM-01 7 136699812 136699812 G C CHRM2 Missense_Mutation p.C67S 0.07 deleterious(0.05) probably_damaging(0.986) TCGA-QM-A5NM-01 7 141765178 141765178 C T MGAM Missense_Mutation p.R1510C 0.08 deleterious(0) probably_damaging(1) TCGA-QM-A5NM-01 7 149418077 149418077 C T KRBA1 Silent p.P102P 0.35 TCGA-QM-A5NM-01 7 150069555 150069555 G A REPIN1 Missense_Mutation p.G466R 0.19 deleterious(0) probably_damaging(1) TCGA-QM-A5NM-01 7 15725735 15725735 G C MEOX2 Missense_Mutation p.S98C 0.35 tolerated(0.13) benign(0.174) TCGA-QM-A5NM-01 7 55224639 55224639 C T EGFR Intron 0.56 TCGA-QM-A5NM-01 7 75184771 75184771 C T HIP1 Missense_Mutation p.A638T 0.61 deleterious(0.03) benign(0.019) TCGA-QM-A5NM-01 8 19682374 19682374 T C INTS10 Silent p.D299D 0.68 TCGA-QM-A5NM-01 8 25720242 25720242 G T EBF2 Missense_Mutation p.P361T 0.12 deleterious(0.02) probably_damaging(0.951) TCGA-QM-A5NM-01 8 41363429 41363429 G A GOLGA7 Splice_Site p.X89_splice 0.12 TCGA-QM-A5NM-01 X 105449630 105449630 T C MUM1L1 Missense_Mutation p.S69P 0.19 tolerated(0.06) probably_damaging(0.972) TCGA-QM-A5NM-01 X 153588159 153588159 G T FLNA Missense_Mutation p.T1307N 0.20 tolerated(0.13) benign(0.037) TCGA-QM-A5NM-01 X 39933118 39933118 C T BCOR Missense_Mutation p.C494Y 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-QM-A5NM-01 X 73044555 73044555 G A XIST RNA 0.11 TCGA-QN-A5NN-01 10 102054719 102054719 A G PKD2L1 Silent p.F506F 0.30 TCGA-QN-A5NN-01 10 102783751 102783751 C T PDZD7 Missense_Mutation p.V101M 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-QN-A5NN-01 10 26500996 26500996 C T MYO3A 3'UTR 0.70 TCGA-QN-A5NN-01 10 5141029 5141029 A G AKR1C3 Silent p.G135G 0.36 TCGA-QN-A5NN-01 10 85972083 85972083 G T CDHR1 Missense_Mutation p.D568Y 0.32 deleterious(0) probably_damaging(0.986) TCGA-QN-A5NN-01 11 102661492 102661492 C G MMP1 Missense_Mutation p.M414I 0.57 tolerated(0.45) benign(0.006) TCGA-QN-A5NN-01 11 55703549 55703549 C A OR5I1 Missense_Mutation p.A110S 0.27 deleterious(0.05) probably_damaging(0.991) TCGA-QN-A5NN-01 11 61105561 61105561 T G DAK Missense_Mutation p.L51R 0.58 deleterious(0) probably_damaging(0.987) TCGA-QN-A5NN-01 11 6643541 6643541 G T DCHS1 Silent p.G3122G 0.55 TCGA-QN-A5NN-01 11 71693851 71693851 A C RNF121 Silent p.T96T 0.24 TCGA-QN-A5NN-01 11 76813927 76813927 G A OMP Silent p.P14P 0.57 TCGA-QN-A5NN-01 12 122361824 122361824 G T WDR66 Silent p.R225R 0.32 TCGA-QN-A5NN-01 12 49912901 49912901 A G SPATS2 Missense_Mutation p.K315R 0.47 tolerated(1) possibly_damaging(0.883) TCGA-QN-A5NN-01 12 50834308 50834308 C G LARP4 Missense_Mutation p.F242L 0.46 deleterious(0) probably_damaging(0.998) TCGA-QN-A5NN-01 13 39597212 39597212 C T PROSER1 Missense_Mutation p.R207Q 0.69 deleterious(0.01) probably_damaging(0.999) TCGA-QN-A5NN-01 14 20692036 20692036 A G OR11H6 Silent p.T56T 0.20 TCGA-QN-A5NN-01 14 75265354 75265354 C T YLPM1 Silent p.G1118G 0.57 TCGA-QN-A5NN-01 15 23690478 23690478 C A GOLGA6L2 Missense_Mutation p.E64D 0.92 benign(0) TCGA-QN-A5NN-01 15 38229143 38229143 A C TMCO5A Missense_Mutation p.Q79P 0.80 deleterious(0.04) possibly_damaging(0.804) TCGA-QN-A5NN-01 15 53957934 53957934 T C WDR72 Silent p.R599R 0.76 TCGA-QN-A5NN-01 16 16149958 16149958 A G ABCC1 Missense_Mutation p.M495V 0.19 deleterious(0.01) benign(0.078) TCGA-QN-A5NN-01 16 20331092 20331092 T C GP2 Splice_Site p.X290_splice 0.50 TCGA-QN-A5NN-01 16 28618359 28618359 A T SULT1A1 Missense_Mutation p.S138T 0.23 deleterious(0.01) possibly_damaging(0.518) TCGA-QN-A5NN-01 16 30021385 30021385 G A DOC2A Silent p.P53P 0.54 TCGA-QN-A5NN-01 16 89351717 89351728 CGACGTGTCTGA - ANKRD11 In_Frame_Del p.S408_S411del 0.50 TCGA-QN-A5NN-01 17 29528441 29528441 C T NF1 Nonsense_Mutation p.Q400* 0.77 TCGA-QN-A5NN-01 17 56247337 56247337 G T OR4D2 Missense_Mutation p.L107F 0.78 tolerated(0.3) benign(0.077) TCGA-QN-A5NN-01 17 7577559 7577559 G T TP53 Missense_Mutation p.S241Y 0.86 deleterious(0) probably_damaging(1) TCGA-QN-A5NN-01 18 77171011 77171011 G A NFATC1 Missense_Mutation p.V233I 0.75 tolerated(0.75) benign(0.012) TCGA-QN-A5NN-01 19 11624812 11624812 A C ECSIT Missense_Mutation p.I107M 0.80 deleterious(0.01) benign(0.033) TCGA-QN-A5NN-01 19 50436066 50436068 CTT - ATF5 In_Frame_Del p.S190del 0.55 TCGA-QN-A5NN-01 19 54410111 54410111 C T PRKCG Missense_Mutation p.R686C 0.25 deleterious_low_confidence(0.01) benign(0.258) TCGA-QN-A5NN-01 1 100181217 100181217 C T FRRS1 Missense_Mutation p.M416I 0.45 tolerated(0.49) benign(0.005) TCGA-QN-A5NN-01 1 103352425 103352425 G A COL11A1 Missense_Mutation p.T1599I 0.24 unknown(0) TCGA-QN-A5NN-01 1 109801533 109801533 C T CELSR2 Missense_Mutation p.R1264W 0.35 deleterious(0) probably_damaging(0.987) TCGA-QN-A5NN-01 1 154987310 154987312 CTT - ZBTB7B In_Frame_Del p.F93del 0.86 TCGA-QN-A5NN-01 1 200522651 200522653 TTC - KIF14 In_Frame_Del p.E1604del 0.36 TCGA-QN-A5NN-01 1 23232558 23232558 A G EPHB2 Missense_Mutation p.E616G 0.54 deleterious(0) probably_damaging(0.984) TCGA-QN-A5NN-01 1 234541826 234541826 G C TARBP1 Missense_Mutation p.A1271G 0.21 deleterious(0) probably_damaging(0.997) TCGA-QN-A5NN-01 1 248844931 248844931 T G OR14I1 Missense_Mutation p.R225S 0.26 deleterious(0.02) possibly_damaging(0.864) TCGA-QN-A5NN-01 1 2541172 2541172 C T MMEL1 Missense_Mutation p.E131K 0.25 deleterious(0.01) probably_damaging(1) TCGA-QN-A5NN-01 1 6228223 6228223 C T CHD5 Missense_Mutation p.R65Q 0.18 deleterious_low_confidence(0.01) benign(0.238) TCGA-QN-A5NN-01 1 8684426 8684426 G C RERE Missense_Mutation p.I113M 0.21 probably_damaging(0.977) TCGA-QN-A5NN-01 20 2842328 2842328 G A VPS16 Missense_Mutation p.G293S 0.29 deleterious(0.04) possibly_damaging(0.888) TCGA-QN-A5NN-01 20 57571752 57571752 C A CTSZ Missense_Mutation p.W248L 0.33 deleterious(0) probably_damaging(0.999) TCGA-QN-A5NN-01 20 60927360 60927360 G C LAMA5 Missense_Mutation p.R209G 0.28 benign(0.116) TCGA-QN-A5NN-01 2 133174753 133174753 G A GPR39 Silent p.L46L 0.85 TCGA-QN-A5NN-01 2 135745372 135745372 C T MAP3K19 Missense_Mutation p.R357Q 0.61 tolerated(0.11) benign(0.048) TCGA-QN-A5NN-01 3 122247220 122247220 A T PARP9 Silent p.P852P 0.35 TCGA-QN-A5NN-01 3 13663415 13663415 G A FBLN2 Missense_Mutation p.D766N 0.33 deleterious(0) probably_damaging(0.999) TCGA-QN-A5NN-01 3 14552718 14552718 C T GRIP2 RNA 0.29 TCGA-QN-A5NN-01 3 184071184 184071184 C T CLCN2 Missense_Mutation p.E628K 0.27 deleterious(0.02) possibly_damaging(0.887) TCGA-QN-A5NN-01 3 52366244 52366244 C T DNAH1 Missense_Mutation p.R374C 0.46 probably_damaging(0.998) TCGA-QN-A5NN-01 4 6304157 6304157 T C WFS1 Missense_Mutation p.F879L 0.73 tolerated(0.25) probably_damaging(0.994) TCGA-QN-A5NN-01 5 140718978 140718978 C T PCDHGA2 Missense_Mutation p.T147M 0.55 deleterious_low_confidence(0.04) possibly_damaging(0.48) TCGA-QN-A5NN-01 5 24537572 24537572 A C CDH10 Missense_Mutation p.I148S 0.20 deleterious(0) probably_damaging(0.99) TCGA-QN-A5NN-01 5 53467719 53467719 G A ARL15 Nonsense_Mutation p.R30* 0.65 TCGA-QN-A5NN-01 5 67589632 67589643 ATTATATGAAGA - PIK3R1 In_Frame_Del p.L466_E469del 0.43 TCGA-QN-A5NN-01 5 72364497 72364497 T G FCHO2 Silent p.P490P 0.62 TCGA-QN-A5NN-01 6 117686852 117686852 T A ROS1 Silent p.S955S 0.85 TCGA-QN-A5NN-01 6 32610504 32610504 G A HLA-DQA1 Missense_Mutation p.R244H 0.34 tolerated(0.21) benign(0.039) TCGA-QN-A5NN-01 6 49814267 49814267 G A CRISP1 Missense_Mutation p.T134M 0.17 tolerated(0.26) benign(0.179) TCGA-QN-A5NN-01 6 76712656 76712656 C T IMPG1 Missense_Mutation p.G424R 0.56 tolerated(1) benign(0) TCGA-QN-A5NN-01 7 127721495 127721495 C T SND1 Silent p.P684P 0.47 TCGA-QN-A5NN-01 7 149557897 149557897 G A ZNF862 Missense_Mutation p.D550N 0.45 deleterious(0.04) possibly_damaging(0.856) TCGA-QN-A5NN-01 7 150558050 150558050 C T AOC1 Missense_Mutation p.T670M 0.47 deleterious(0) probably_damaging(1) TCGA-QN-A5NN-01 7 20682948 20682948 C T ABCB5 Silent p.I152I 0.11 TCGA-QN-A5NN-01 7 2962374 2962374 G A CARD11 Silent p.G721G 0.30 TCGA-QN-A5NN-01 7 99811722 99811722 T C STAG3 3'UTR 0.24 TCGA-QN-A5NN-01 8 121238999 121238999 T A COL14A1 Silent p.T666T 0.11 TCGA-QN-A5NN-01 8 121535576 121535576 A G MTBP Nonstop_Mutation p.*905Wext*31 0.15 TCGA-QN-A5NN-01 8 140630989 140630989 C T KCNK9 Missense_Mutation p.A213T 0.14 tolerated(0.06) benign(0.395) TCGA-QN-A5NN-01 8 145006361 145006361 C G PLEC Missense_Mutation p.K810N 0.59 unknown(0) TCGA-QN-A5NN-01 8 1616711 1616711 C T DLGAP2 Missense_Mutation p.A596V 0.52 deleterious(0.02) benign(0.237) TCGA-QN-A5NN-01 8 24771770 24771770 G A NEFM Missense_Mutation p.R155H 0.69 deleterious(0) unknown(0) TCGA-QN-A5NN-01 8 27099994 27099994 A G STMN4 Missense_Mutation p.M10T 0.50 deleterious(0) benign(0.268) TCGA-QN-A5NN-01 8 86025226 86025226 C T LRRCC1 Missense_Mutation p.R146C 0.58 tolerated(0.31) benign(0.001) TCGA-QN-A5NN-01 9 21802664 21802664 G C MTAP 5'UTR 0.33 TCGA-QN-A5NN-01 X 130220396 130220396 A T ARHGAP36 Missense_Mutation p.I459F 0.26 deleterious(0.04) possibly_damaging(0.616) TCGA-QN-A5NN-01 X 18929042 18929042 G C PHKA2 Missense_Mutation p.A725G 0.74 tolerated(0.19) benign(0.001) TCGA-QN-A5NN-01 X 49098537 49098537 C G CCDC22 Missense_Mutation p.P95R 0.80 deleterious(0.02) benign(0.174) TCGA-QN-A5NN-01 X 54955077 54955077 C T TRO Silent p.R640R 0.86