sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-RZ-AB0B-01 13 79175838 79175838 C T POU4F1 Silent p.A324A 0.12 TCGA-RZ-AB0B-01 15 73852150 73852150 G T C15orf60 Nonsense_Mutation p.E232* 0.08 TCGA-RZ-AB0B-01 17 29858817 29858817 C T RAB11FIP4 3'UTR 0.10 TCGA-RZ-AB0B-01 18 9550172 9550172 C A PPP4R1 Missense_Mutation p.V809L 0.39 tolerated(1) benign(0.016) TCGA-RZ-AB0B-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.38 deleterious(0) probably_damaging(0.911) TCGA-RZ-AB0B-01 19 51220008 51220008 G A SHANK1 Missense_Mutation p.L57F 0.09 benign(0.031) TCGA-RZ-AB0B-01 19 55086935 55086935 G A LILRA2 Missense_Mutation p.G290R 0.45 tolerated(0.11) benign(0.26) TCGA-RZ-AB0B-01 1 11169374 11169374 T A MTOR Missense_Mutation p.I2501F 0.14 deleterious(0.01) possibly_damaging(0.86) TCGA-RZ-AB0B-01 1 11169412 11169412 A C MTOR Missense_Mutation p.V2488G 0.86 tolerated(0.41) benign(0.004) TCGA-RZ-AB0B-01 20 33722607 33722607 C T EDEM2 Silent p.P212P 0.05 TCGA-RZ-AB0B-01 20 62236098 62236098 A T GMEB2 Nonsense_Mutation p.L76* 0.15 TCGA-RZ-AB0B-01 2 68753323 68753323 A T APLF Silent p.T251T 0.05 TCGA-RZ-AB0B-01 4 114823726 114823726 G T ARSJ Missense_Mutation p.P502T 0.46 deleterious(0.02) probably_damaging(1) TCGA-RZ-AB0B-01 6 38828378 38828378 G A DNAH8 Missense_Mutation p.R1818H 0.10 probably_damaging(1) TCGA-RZ-AB0B-01 7 100074941 100074941 G A TSC22D4 Missense_Mutation p.R241W 0.07 tolerated_low_confidence(0.12) benign(0.004) TCGA-RZ-AB0B-01 8 121224799 121224799 C T COL14A1 Missense_Mutation p.T527M 0.81 deleterious(0.03) possibly_damaging(0.832) TCGA-RZ-AB0B-01 8 38021245 38021245 C G LSM1 Missense_Mutation p.Q115H 0.45 deleterious(0.01) benign(0.227) TCGA-RZ-AB0B-01 X 144337481 144337482 - CTTACCTGAAGGATCTTCAAAGCAGAATGAAGACCTAGG SPANXN1 3'UTR 0.09 TCGA-V3-A9ZX-01 11 100179204 100179204 T C CNTN5 Intron 0.34 TCGA-V3-A9ZX-01 11 57118298 57118298 C A P2RX3 Nonsense_Mutation p.C256* 0.10 TCGA-V3-A9ZX-01 12 12247527 12247527 C A BCL2L14 Intron 0.04 TCGA-V3-A9ZX-01 12 53449609 53449609 C T TENC1 Silent p.H257H 0.34 TCGA-V3-A9ZX-01 16 23481415 23481415 C T GGA2 Missense_Mutation p.A508T 0.27 tolerated(0.07) probably_damaging(0.93) TCGA-V3-A9ZX-01 17 71239111 71239111 C G C17orf80 Silent p.V566V 0.46 TCGA-V3-A9ZX-01 17 9490111 9490111 G C WDR16 Missense_Mutation p.D123H 0.47 deleterious(0.01) probably_damaging(0.933) TCGA-V3-A9ZX-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.40 deleterious(0) probably_damaging(0.911) TCGA-V3-A9ZX-01 19 52196513 52196513 T A SPACA6P-AS RNA 0.38 TCGA-V3-A9ZX-01 1 13108945 13108945 C A PRAMEF23 RNA 0.09 TCGA-V3-A9ZX-01 7 24758768 24758768 C G DFNA5 Missense_Mutation p.L158F 0.39 deleterious(0) probably_damaging(0.991) TCGA-V3-A9ZY-01 12 71016404 71016404 C T PTPRB Silent p.S158S 0.50 TCGA-V3-A9ZY-01 13 33226028 33226028 G C PDS5B Missense_Mutation p.D66H 0.37 deleterious(0) benign(0.242) TCGA-V3-A9ZY-01 14 102802138 102802138 T C ZNF839 Missense_Mutation p.L541P 0.13 tolerated(0.22) benign(0.009) TCGA-V3-A9ZY-01 14 94089125 94089139 AGAGAGAGTACCTCG - UNC79 In_Frame_Del p.Q1672_D1677delinsH 0.37 TCGA-V3-A9ZY-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.41 deleterious(0) probably_damaging(0.911) TCGA-V3-A9ZY-01 19 44933957 44933957 G A ZNF229 Silent p.N333N 0.55 TCGA-V3-A9ZY-01 19 51021330 51021330 C T LRRC4B Missense_Mutation p.R547Q 0.33 tolerated(0.12) benign(0.044) TCGA-V3-A9ZY-01 19 54233129 54233129 T G MIR518E RNA 0.54 TCGA-V3-A9ZY-01 19 55363677 55363677 C T KIR3DL2 Missense_Mutation p.R99C 0.45 tolerated(0.07) benign(0.011) TCGA-V3-A9ZY-01 19 56307611 56307611 A G NLRP11 Missense_Mutation p.M726T 0.48 tolerated(0.23) benign(0.145) TCGA-V3-A9ZY-01 2 242169044 242169044 T C HDLBP Missense_Mutation p.K1260R 0.08 tolerated(0.28) benign(0.09) TCGA-V3-A9ZY-01 4 187542653 187542653 G A FAT1 Missense_Mutation p.S1696L 0.05 probably_damaging(0.946) TCGA-V3-A9ZY-01 5 140719342 140719342 C A PCDHGA2 Missense_Mutation p.D268E 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-V3-A9ZY-01 5 153174266 153174266 G A GRIA1 Missense_Mutation p.E796K 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-V3-A9ZY-01 6 27222478 27222478 C G PRSS16 Missense_Mutation p.T386S 0.28 deleterious(0.04) benign(0.361) TCGA-V3-A9ZY-01 7 51095952 51095952 T C COBL Silent p.G947G 0.50 TCGA-V3-A9ZY-01 9 79322557 79322557 C A PRUNE2 Missense_Mutation p.A1545S 0.12 deleterious(0.02) possibly_damaging(0.637) TCGA-V3-A9ZY-01 X 20152122 20152122 A T EIF1AX Missense_Mutation p.W70R 0.92 deleterious(0.01) probably_damaging(0.988) TCGA-V4-A9E5-01 14 22192114 22192114 C T TRAV3 5'UTR 0.05 TCGA-V4-A9E5-01 1 147231077 147231087 CAGAGAGGGCG - GJA5 Frame_Shift_Del p.T87Sfs*132 0.14 TCGA-V4-A9E5-01 1 161487879 161487879 G T FCGR2A Missense_Mutation p.D299Y 0.35 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-V4-A9E5-01 1 24123572 24123572 A G GALE Silent p.G198G 0.21 TCGA-V4-A9E5-01 2 198267360 198267360 T G SF3B1 Missense_Mutation p.K666T 0.48 deleterious(0) probably_damaging(0.994) TCGA-V4-A9E5-01 4 126373735 126373735 C T FAT4 Missense_Mutation p.A3855V 0.24 benign(0.036) TCGA-V4-A9E5-01 4 52861873 52861873 C G LRRC66 Missense_Mutation p.E439Q 0.30 tolerated(0.59) benign(0.008) TCGA-V4-A9E5-01 5 53839202 53839202 A G SNX18 Missense_Mutation p.I605M 0.18 tolerated(0.11) benign(0.083) TCGA-V4-A9E5-01 6 170594480 170594480 G T DLL1 Nonsense_Mutation p.C298* 0.64 TCGA-V4-A9E5-01 6 50805696 50805696 C T TFAP2B Missense_Mutation p.S277L 0.09 deleterious(0) probably_damaging(0.983) TCGA-V4-A9E5-01 7 100345181 100345181 C T ZAN Missense_Mutation p.R314W 0.38 probably_damaging(0.999) TCGA-V4-A9E5-01 8 103289313 103289313 A G UBR5 Silent p.T2132T 0.33 TCGA-V4-A9E5-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.30 deleterious(0) probably_damaging(0.999) TCGA-V4-A9E5-01 X 107018505 107018505 G T TSC22D3 Silent p.R49R 0.59 TCGA-V4-A9E5-01 X 136113492 136113492 G A GPR101 Silent p.F114F 0.62 TCGA-V4-A9E5-01 X 48054516 48054516 C G SSX5 Missense_Mutation p.S40T 0.30 tolerated_low_confidence(0.51) benign(0.003) TCGA-V4-A9E7-01 10 134595441 134595441 A T INPP5A Missense_Mutation p.Q412L 0.40 deleterious_low_confidence(0) benign(0.403) TCGA-V4-A9E7-01 11 92620220 92620220 G T FAT3 Missense_Mutation p.G4331V 0.40 possibly_damaging(0.89) TCGA-V4-A9E7-01 12 55795145 55795145 C T OR6C65 Missense_Mutation p.S278F 0.52 deleterious_low_confidence(0) probably_damaging(1) TCGA-V4-A9E7-01 14 21936887 21936887 T C RAB2B Missense_Mutation p.I71V 0.44 tolerated(0.46) possibly_damaging(0.539) TCGA-V4-A9E7-01 16 70500085 70500085 C T FUK Silent p.P112P 0.78 TCGA-V4-A9E7-01 17 1371413 1371413 G A MYO1C Missense_Mutation p.A922V 0.14 tolerated(0.07) probably_damaging(0.97) TCGA-V4-A9E7-01 19 6374569 6374569 T - ALKBH7 Frame_Shift_Del p.L158Cfs*43 0.27 TCGA-V4-A9E7-01 19 9089401 9089401 C T MUC16 Missense_Mutation p.S805N 0.43 unknown(0) TCGA-V4-A9E7-01 1 159170598 159170598 C T CADM3 Silent p.T395T 0.32 TCGA-V4-A9E7-01 2 102793054 102793054 G C IL1R1 Missense_Mutation p.W515C 0.28 deleterious(0) probably_damaging(1) TCGA-V4-A9E7-01 3 167402093 167402093 C G PDCD10 3'UTR 0.94 TCGA-V4-A9E7-01 3 193071963 193071963 C T ATP13A5 Missense_Mutation p.A187T 0.87 tolerated(0.77) benign(0.078) TCGA-V4-A9E7-01 5 140563665 140563665 G A PCDHB16 Missense_Mutation p.G511S 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-V4-A9E7-01 5 72184017 72184017 C T TNPO1 Silent p.R472R 0.37 TCGA-V4-A9E7-01 6 74477911 74477911 G T CD109 Missense_Mutation p.S544I 0.88 deleterious(0) benign(0.094) TCGA-V4-A9E7-01 6 75890813 75890813 G A COL12A1 Missense_Mutation p.A669V 0.80 benign(0.012) TCGA-V4-A9E7-01 9 139973715 139973715 A - UAP1L1 Frame_Shift_Del p.K285Rfs*68 0.12 TCGA-V4-A9E7-01 9 37518321 37518321 G A FBXO10 Missense_Mutation p.A772V 0.09 tolerated(0.34) benign(0.018) TCGA-V4-A9E7-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.53 deleterious(0) probably_damaging(0.999) TCGA-V4-A9E8-01 10 74322810 74322810 T A MICU1 Missense_Mutation p.E58V 0.33 tolerated_low_confidence(0.12) benign(0.103) TCGA-V4-A9E8-01 10 95891952 95891952 G C PLCE1 Missense_Mutation p.E410Q 0.24 tolerated_low_confidence(0.06) benign(0.005) TCGA-V4-A9E8-01 12 62996632 62996632 A G C12orf61 3'UTR 0.24 TCGA-V4-A9E8-01 17 59668490 59668490 G A NACA2 Nonsense_Mutation p.Q18* 0.38 TCGA-V4-A9E8-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.32 deleterious(0) probably_damaging(0.911) TCGA-V4-A9E8-01 19 7987612 7987612 T C SNAPC2 Missense_Mutation p.L323P 0.04 deleterious(0) probably_damaging(1) TCGA-V4-A9E8-01 1 237777594 237777594 C A RYR2 Missense_Mutation p.N1722K 0.55 probably_damaging(0.996) TCGA-V4-A9E8-01 1 248224859 248224859 G A OR2L3 Silent p.R292R 0.27 TCGA-V4-A9E8-01 2 54096539 54096539 G A PSME4 Missense_Mutation p.S1746F 0.30 tolerated(0.25) benign(0.003) TCGA-V4-A9E8-01 5 178506834 178506834 G A ZNF354C Silent p.P467P 0.34 TCGA-V4-A9E8-01 6 30653733 30653733 G T PPP1R18 Silent p.S21S 0.51 TCGA-V4-A9E8-01 6 33555376 33555376 G C GGNBP1 Intron 0.23 TCGA-V4-A9E8-01 8 17417930 17417930 C A SLC7A2 Silent p.S504S 0.51 TCGA-V4-A9E8-01 9 18721576 18721576 G A ADAMTSL1 Missense_Mutation p.R640Q 0.39 tolerated(0.69) benign(0.06) TCGA-V4-A9E8-01 X 154014531 154014531 C T MPP1 Missense_Mutation p.G209S 0.06 tolerated(0.17) benign(0.044) TCGA-V4-A9E8-01 X 44918345 44918345 A G KDM6A Missense_Mutation p.I324V 0.77 deleterious(0) possibly_damaging(0.745) TCGA-V4-A9E9-01 10 22055195 22055195 G C DNAJC1 Missense_Mutation p.S381C 0.50 deleterious(0.01) possibly_damaging(0.827) TCGA-V4-A9E9-01 10 85956312 85956312 C T CDHR1 Missense_Mutation p.S68F 0.52 tolerated(0.53) possibly_damaging(0.477) TCGA-V4-A9E9-01 15 52065948 52065948 G A TMOD2 Missense_Mutation p.R108H 0.52 tolerated(0.6) benign(0.002) TCGA-V4-A9E9-01 16 20331019 20331019 G T GP2 Silent p.I313I 0.51 TCGA-V4-A9E9-01 17 3628701 3628701 G C GSG2 Missense_Mutation p.G491A 0.39 deleterious(0) probably_damaging(0.992) TCGA-V4-A9E9-01 19 8656924 8656924 C A ADAMTS10 Missense_Mutation p.G551W 0.12 deleterious(0) probably_damaging(0.995) TCGA-V4-A9E9-01 20 258020 258021 AA - C20orf96 Frame_Shift_Del p.L190Rfs*12 0.35 TCGA-V4-A9E9-01 22 19839838 19839838 T A C22orf29 5'UTR 0.56 TCGA-V4-A9E9-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.37 deleterious(0) probably_damaging(1) TCGA-V4-A9E9-01 4 104062907 104062907 C G CENPE Missense_Mutation p.K1821N 0.60 probably_damaging(0.959) TCGA-V4-A9E9-01 4 2877722 2877722 G C ADD1 Missense_Mutation p.R27P 0.40 deleterious(0) probably_damaging(0.965) TCGA-V4-A9E9-01 8 113702197 113702197 A T CSMD3 Silent p.V685V 0.27 TCGA-V4-A9E9-01 8 87165237 87165237 A C ATP6V0D2 3'UTR 0.52 TCGA-V4-A9E9-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.43 deleterious(0) probably_damaging(0.999) TCGA-V4-A9E9-01 9 95608788 95608788 A C ZNF484 Missense_Mutation p.S763A 0.39 deleterious(0.02) benign(0.138) TCGA-V4-A9EA-01 11 117307958 117307958 C T DSCAML1 Missense_Mutation p.G1594R 0.14 tolerated(0.46) benign(0.065) TCGA-V4-A9EA-01 12 52309169 52309169 G A ACVRL1 Silent p.A311A 0.40 TCGA-V4-A9EA-01 14 51379761 51379761 C T PYGL Missense_Mutation p.A536T 0.08 tolerated(0.41) benign(0.035) TCGA-V4-A9EA-01 16 30102139 30102139 C T TBX6 Missense_Mutation p.R98Q 0.56 tolerated(0.41) benign(0.001) TCGA-V4-A9EA-01 16 84940226 84940226 G A CRISPLD2 Missense_Mutation p.R491Q 0.16 deleterious(0.02) possibly_damaging(0.847) TCGA-V4-A9EA-01 1 213446008 213446008 G C RPS6KC1 3'UTR 0.50 TCGA-V4-A9EA-01 1 22332398 22332398 G T CELA3A Intron 0.07 TCGA-V4-A9EA-01 20 44511331 44511331 A G ZSWIM1 Missense_Mutation p.M34V 0.10 tolerated(0.5) benign(0.001) TCGA-V4-A9EA-01 22 31332573 31332573 C T MORC2 Missense_Mutation p.M492I 0.48 tolerated(0.45) benign(0.001) TCGA-V4-A9EA-01 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.42 deleterious(0) probably_damaging(1) TCGA-V4-A9EA-01 6 33654821 33654821 G A ITPR3 Silent p.E2005E 0.66 TCGA-V4-A9EA-01 6 36882388 36882388 C T C6orf89 Missense_Mutation p.A212V 0.61 tolerated(0.59) benign(0.002) TCGA-V4-A9EA-01 9 18906784 18906784 G A ADAMTSL1 Missense_Mutation p.G1686S 0.45 deleterious(0) probably_damaging(1) TCGA-V4-A9EA-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.48 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EA-01 X 46887407 46887407 T C JADE3 Missense_Mutation p.Y197H 0.13 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EC-01 10 71144107 71144107 C T HK1 Missense_Mutation p.A534V 0.38 deleterious(0.03) possibly_damaging(0.908) TCGA-V4-A9EC-01 13 111098204 111098204 G C COL4A2 Missense_Mutation p.G329A 0.45 probably_damaging(0.999) TCGA-V4-A9EC-01 15 23932001 23932001 G T NDN Missense_Mutation p.P122T 0.10 tolerated(0.47) probably_damaging(1) TCGA-V4-A9EC-01 15 71193327 71193327 A C LRRC49 Missense_Mutation p.E92A 0.46 deleterious(0.02) possibly_damaging(0.607) TCGA-V4-A9EC-01 17 39316785 39316785 G A KRTAP4-4 Silent p.T53T 0.41 TCGA-V4-A9EC-01 18 28913603 28913603 G A DSG1 Missense_Mutation p.A246T 0.47 tolerated(0.16) benign(0.1) TCGA-V4-A9EC-01 1 12164444 12164444 G A TNFRSF8 Missense_Mutation p.V93M 0.45 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EC-01 1 213415244 213415244 G T RPS6KC1 Missense_Mutation p.V809L 0.49 tolerated(1) benign(0.001) TCGA-V4-A9EC-01 1 237791261 237791261 G T RYR2 Silent p.T2107T 0.39 TCGA-V4-A9EC-01 1 85787044 85787044 A G DDAH1 3'UTR 0.41 TCGA-V4-A9EC-01 21 38115707 38115707 C T SIM2 Missense_Mutation p.L340F 0.15 deleterious(0.01) possibly_damaging(0.66) TCGA-V4-A9EC-01 22 41573600 41573600 T C EP300 Missense_Mutation p.M1962T 0.42 benign(0.135) TCGA-V4-A9EC-01 2 198267370 198267370 T G SF3B1 Missense_Mutation p.T663P 0.42 deleterious(0) probably_damaging(1) TCGA-V4-A9EC-01 2 58388662 58388662 A G FANCL Missense_Mutation p.Y344H 0.23 deleterious(0) probably_damaging(0.99) TCGA-V4-A9EC-01 5 128302199 128302199 C T SLC27A6 Silent p.F123F 0.40 TCGA-V4-A9EC-01 6 33169207 33169208 - T SLC39A7 Frame_Shift_Ins p.G63Wfs*24 0.34 TCGA-V4-A9EC-01 6 53519136 53519136 C T KLHL31 Missense_Mutation p.R312Q 0.47 deleterious(0) probably_damaging(0.997) TCGA-V4-A9EC-01 9 12695537 12695541 AAGTA - TYRP1 Frame_Shift_Del p.S137Rfs*42 0.18 TCGA-V4-A9EC-01 9 135205194 135205194 G C SETX Missense_Mutation p.F597L 0.29 tolerated(0.68) benign(0.001) TCGA-V4-A9EC-01 9 140374845 140374845 T C PNPLA7 Silent p.T833T 0.52 TCGA-V4-A9EC-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.49 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EC-01 X 151131076 151131076 C T GABRE Missense_Mutation p.D128N 0.50 deleterious(0) probably_damaging(0.994) TCGA-V4-A9EC-01 X 153207074 153207074 G - RENBP Frame_Shift_Del p.R268Vfs*15 0.29 TCGA-V4-A9EC-01 X 20156731 20156731 C T EIF1AX Missense_Mutation p.G9D 0.49 deleterious(0) unknown(0) TCGA-V4-A9ED-01 11 117267963 117267963 G A CEP164 Silent p.A1145A 0.07 TCGA-V4-A9ED-01 11 128360370 128360370 G A ETS1 Nonsense_Mutation p.R106* 0.15 TCGA-V4-A9ED-01 12 57113149 57113149 G A NACA Intron 0.62 TCGA-V4-A9ED-01 13 49281339 49281339 T A CYSLTR2 Missense_Mutation p.L129Q 0.41 deleterious(0) probably_damaging(1) TCGA-V4-A9ED-01 15 53809855 53809855 C A WDR72 3'UTR 0.14 TCGA-V4-A9ED-01 17 32483180 32483180 C T ASIC2 Silent p.P124P 0.39 TCGA-V4-A9ED-01 19 2426117 2426117 A G TMPRSS9 3'UTR 0.11 TCGA-V4-A9ED-01 19 56226523 56226523 G A NLRP9 Missense_Mutation p.S800F 0.44 tolerated(0.71) benign(0.06) TCGA-V4-A9ED-01 1 162773243 162773243 G C HSD17B7 Missense_Mutation p.C222S 0.31 deleterious(0.02) possibly_damaging(0.607) TCGA-V4-A9ED-01 20 52570145 52570145 G C BCAS1 Missense_Mutation p.D502E 0.42 deleterious(0.02) possibly_damaging(0.505) TCGA-V4-A9ED-01 2 131520173 131520173 G A AMER3 Silent p.S176S 0.35 TCGA-V4-A9ED-01 3 129303286 129303286 C A PLXND1 Missense_Mutation p.Q657H 0.09 tolerated(0.06) benign(0.03) TCGA-V4-A9ED-01 3 197476822 197476822 C G FYTTD1 5'UTR 0.90 TCGA-V4-A9ED-01 4 184605010 184605010 G A TRAPPC11 Intron 0.60 TCGA-V4-A9EE-01 10 50863168 50863168 C T CHAT Silent p.Y554Y 0.38 TCGA-V4-A9EE-01 11 5372973 5372973 T C OR51B6 Missense_Mutation p.V79A 0.61 deleterious(0.01) possibly_damaging(0.468) TCGA-V4-A9EE-01 11 92703062 92703062 C A MTNR1B Silent p.G57G 0.38 TCGA-V4-A9EE-01 14 77493152 77493152 A G IRF2BPL Silent p.G328G 0.12 TCGA-V4-A9EE-01 15 48730066 48730066 G A FBN1 Missense_Mutation p.S2071L 0.36 benign(0.009) TCGA-V4-A9EE-01 15 48730067 48730067 A G FBN1 Missense_Mutation p.S2071P 0.35 possibly_damaging(0.664) TCGA-V4-A9EE-01 15 82517553 82517553 G A EFTUD1 Silent p.S415S 0.39 TCGA-V4-A9EE-01 16 27689181 27689181 C T KIAA0556 Silent p.G224G 0.30 TCGA-V4-A9EE-01 17 42157822 42157822 C G HDAC5 Missense_Mutation p.W925C 0.50 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EE-01 19 56041168 56041168 G A SBK2 Missense_Mutation p.R327C 0.17 tolerated(0.22) possibly_damaging(0.825) TCGA-V4-A9EE-01 1 154987749 154987749 C T ZBTB7B Missense_Mutation p.R239W 0.30 deleterious(0.01) probably_damaging(0.942) TCGA-V4-A9EE-01 1 205897160 205897160 G A SLC26A9 Missense_Mutation p.S324L 0.43 tolerated(1) benign(0.004) TCGA-V4-A9EE-01 20 17581467 17581471 AAGAA - DSTN Frame_Shift_Del p.R32Efs*33 0.32 TCGA-V4-A9EE-01 22 30690061 30690061 C T TBC1D10A Silent p.L255L 0.48 TCGA-V4-A9EE-01 2 74719378 74719378 G C TTC31 Intron 0.27 TCGA-V4-A9EE-01 4 3419159 3419159 G A RGS12 Silent p.L884L 0.37 TCGA-V4-A9EE-01 8 29024912 29024912 C T KIF13B Missense_Mutation p.R379Q 0.56 deleterious(0.02) possibly_damaging(0.606) TCGA-V4-A9EE-01 9 130206861 130206861 G A ZNF79 Silent p.Q294Q 0.06 TCGA-V4-A9EE-01 9 139316331 139316331 G A PMPCA Missense_Mutation p.M437I 0.59 deleterious(0) possibly_damaging(0.755) TCGA-V4-A9EE-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.53 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EE-01 X 100653465 100653465 T C GLA Missense_Mutation p.N298D 0.86 deleterious(0.03) probably_damaging(0.999) TCGA-V4-A9EE-01 X 111019508 111019508 G A TRPC5 3'UTR 0.85 TCGA-V4-A9EE-01 X 47272125 47272125 T C ZNF157 Missense_Mutation p.F218S 0.88 deleterious(0) probably_damaging(0.983) TCGA-V4-A9EF-01 10 95168603 95168603 C T MYOF Missense_Mutation p.V224I 0.51 tolerated(0.31) benign(0.016) TCGA-V4-A9EF-01 11 126176602 126176602 C - DCPS Frame_Shift_Del p.Y113* 0.35 TCGA-V4-A9EF-01 12 27234201 27234201 T C C12orf71 Missense_Mutation p.K239R 0.41 tolerated(0.24) benign(0.082) TCGA-V4-A9EF-01 12 88391867 88391867 A T C12orf50 Missense_Mutation p.H78Q 0.34 tolerated(0.12) benign(0.016) TCGA-V4-A9EF-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.51 deleterious(0) probably_damaging(0.911) TCGA-V4-A9EF-01 3 121438591 121438591 G T GOLGB1 Silent p.R225R 0.07 TCGA-V4-A9EF-01 3 138116204 138116204 C T MRAS Missense_Mutation p.R78W 0.13 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EF-01 3 52440383 52440383 G C BAP1 Nonsense_Mutation p.Y223* 0.94 TCGA-V4-A9EF-01 8 22059408 22059408 G A BMP1 Missense_Mutation p.V734I 0.50 tolerated(0.17) benign(0.06) TCGA-V4-A9EH-01 10 75186442 75186442 C T MSS51 Nonsense_Mutation p.W142* 0.42 TCGA-V4-A9EH-01 11 396622 396622 C A PKP3 Missense_Mutation p.Q83K 0.21 tolerated(0.77) benign(0.075) TCGA-V4-A9EH-01 12 112230450 112230450 G C ALDH2 Missense_Mutation p.G316A 0.40 deleterious(0.01) probably_damaging(1) TCGA-V4-A9EH-01 14 64686021 64686022 - C SYNE2 Frame_Shift_Ins p.I6586Hfs*9 0.29 TCGA-V4-A9EH-01 16 50707379 50707379 G A SNX20 Missense_Mutation p.R297W 0.44 deleterious(0.01) possibly_damaging(0.724) TCGA-V4-A9EH-01 17 76570918 76570918 G T DNAH17 Silent p.S74S 0.06 TCGA-V4-A9EH-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.56 deleterious(0) probably_damaging(0.911) TCGA-V4-A9EH-01 1 161092816 161092816 T C DEDD Intron 0.51 TCGA-V4-A9EH-01 1 247582115 247582115 C T NLRP3 Missense_Mutation p.R7C 0.27 deleterious(0) probably_damaging(1) TCGA-V4-A9EH-01 1 33612880 33612880 G A TRIM62 Silent p.R442R 0.40 TCGA-V4-A9EH-01 3 10140562 10140562 T C FANCD2 Silent p.S1448S 0.43 TCGA-V4-A9EH-01 8 114448977 114448977 T A CSMD3 Missense_Mutation p.K36M 0.05 tolerated_low_confidence(0.06) benign(0.02) TCGA-V4-A9EH-01 8 134239886 134239886 G A WISP1 Missense_Mutation p.C346Y 0.31 deleterious(0) probably_damaging(1) TCGA-V4-A9EI-01 10 81904080 81904080 C T PLAC9 Silent p.P88P 0.56 TCGA-V4-A9EI-01 11 103175411 103175411 T A DYNC2H1 Missense_Mutation p.L3789I 0.49 probably_damaging(0.919) TCGA-V4-A9EI-01 12 57113207 57113207 T G NACA Intron 0.48 TCGA-V4-A9EI-01 13 101020822 101020822 G A PCCA Silent p.V580V 0.46 TCGA-V4-A9EI-01 13 52605146 52605146 G T UTP14C Missense_Mutation p.V736L 0.46 tolerated(0.24) benign(0.132) TCGA-V4-A9EI-01 14 102498624 102498624 A G DYNC1H1 Missense_Mutation p.K3300R 0.26 benign(0.102) TCGA-V4-A9EI-01 14 20404381 20404381 G A OR4K1 Missense_Mutation p.E186K 0.49 tolerated(1) benign(0.006) TCGA-V4-A9EI-01 14 51243678 51243678 C T NIN Missense_Mutation p.V219M 0.40 deleterious(0.01) benign(0.307) TCGA-V4-A9EI-01 14 93760636 93760636 T G BTBD7 Missense_Mutation p.M244L 0.42 tolerated(0.32) possibly_damaging(0.517) TCGA-V4-A9EI-01 16 15102697 15102697 A T PDXDC1 Missense_Mutation p.H214L 0.15 deleterious(0.04) probably_damaging(0.992) TCGA-V4-A9EI-01 17 8044505 8044505 C T PER1 Missense_Mutation p.E1252K 0.82 tolerated_low_confidence(0.76) benign(0.048) TCGA-V4-A9EI-01 18 13885229 13885229 T A MC2R Missense_Mutation p.S97C 0.49 deleterious(0.02) possibly_damaging(0.482) TCGA-V4-A9EI-01 19 1119013 1119013 C T SBNO2 Silent p.L508L 0.30 TCGA-V4-A9EI-01 19 12244189 12244189 C T ZNF20 Missense_Mutation p.R271H 0.35 tolerated(0.12) benign(0.041) TCGA-V4-A9EI-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.38 deleterious(0) probably_damaging(0.911) TCGA-V4-A9EI-01 19 33137370 33137370 C T ANKRD27 Missense_Mutation p.S122N 0.23 tolerated(0.32) benign(0.213) TCGA-V4-A9EI-01 1 237947564 237947564 G A RYR2 Silent p.E4184E 0.41 TCGA-V4-A9EI-01 2 128324266 128324266 C T MYO7B Missense_Mutation p.P112S 0.20 tolerated(0.07) probably_damaging(1) TCGA-V4-A9EI-01 2 138208465 138208465 A C THSD7B Missense_Mutation p.S1004R 0.13 deleterious(0) unknown(0) TCGA-V4-A9EI-01 2 179437657 179437657 G A TTN Missense_Mutation p.A24401V 0.07 TCGA-V4-A9EI-01 2 51255230 51255230 C T NRXN1 Missense_Mutation p.R61H 0.43 tolerated(0.1) benign(0.005) TCGA-V4-A9EI-01 3 52436650 52436659 ATGAACTCAT - BAP1 Frame_Shift_Del p.D672Afs*17 0.82 TCGA-V4-A9EI-01 4 169393884 169393884 T C DDX60L 5'UTR 0.36 TCGA-V4-A9EI-01 5 140228118 140228118 C T PCDHA9 Missense_Mutation p.P13L 0.93 tolerated_low_confidence(0.49) benign(0) TCGA-V4-A9EI-01 5 169015526 169015526 G A SPDL1 Missense_Mutation p.E36K 0.49 deleterious(0.03) probably_damaging(0.972) TCGA-V4-A9EI-01 5 74892575 74892575 A C POLK Missense_Mutation p.Y686S 0.28 tolerated(0.4) benign(0.001) TCGA-V4-A9EI-01 5 98239547 98239547 C T CHD1 Silent p.Q107Q 0.13 TCGA-V4-A9EJ-01 10 22898574 22898574 T G PIP4K2A Missense_Mutation p.K73Q 0.54 deleterious(0.04) possibly_damaging(0.694) TCGA-V4-A9EJ-01 11 1101116 1101116 C A MUC2 Silent p.T2505T 0.31 TCGA-V4-A9EJ-01 11 118499187 118499187 G A PHLDB1 Missense_Mutation p.A550T 0.29 tolerated(0.44) benign(0.005) TCGA-V4-A9EJ-01 11 118499188 118499188 C T PHLDB1 Missense_Mutation p.A550V 0.29 tolerated(0.22) benign(0.14) TCGA-V4-A9EJ-01 11 2443545 2443545 G A TRPM5 Missense_Mutation p.R42W 0.08 deleterious(0) possibly_damaging(0.889) TCGA-V4-A9EJ-01 11 61110817 61110817 G A DAK Missense_Mutation p.G290D 0.47 tolerated(0.53) benign(0.008) TCGA-V4-A9EJ-01 12 7477186 7477186 C T ACSM4 Missense_Mutation p.R510C 0.34 deleterious(0) probably_damaging(0.998) TCGA-V4-A9EJ-01 14 67671488 67671488 C T FAM71D Silent p.D198D 0.47 TCGA-V4-A9EJ-01 14 78183982 78183982 A C SNW1 3'UTR 0.77 TCGA-V4-A9EJ-01 14 91701320 91701320 C T GPR68 Silent p.P25P 0.39 TCGA-V4-A9EJ-01 15 40590425 40590425 T C PLCB2 Missense_Mutation p.K385R 0.65 tolerated(0.16) probably_damaging(1) TCGA-V4-A9EJ-01 15 80762584 80762584 C T ARNT2 Missense_Mutation p.R74C 0.58 deleterious(0) possibly_damaging(0.898) TCGA-V4-A9EJ-01 16 56995983 56995983 G A CETP Missense_Mutation p.R31H 0.07 deleterious(0.02) possibly_damaging(0.859) TCGA-V4-A9EJ-01 16 77465361 77465361 T G ADAMTS18 Missense_Mutation p.H109P 0.50 deleterious(0) probably_damaging(0.985) TCGA-V4-A9EJ-01 17 7760097 7760097 A G LSMD1 Silent p.V158V 0.34 TCGA-V4-A9EJ-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.47 deleterious(0) probably_damaging(0.911) TCGA-V4-A9EJ-01 19 35250775 35250775 A C ZNF599 Missense_Mutation p.F311V 0.36 deleterious(0) possibly_damaging(0.899) TCGA-V4-A9EJ-01 19 6665011 6665011 C T TNFSF14 Missense_Mutation p.V217I 0.30 deleterious(0.04) probably_damaging(0.954) TCGA-V4-A9EJ-01 1 205588884 205588884 T C ELK4 Intron 0.42 TCGA-V4-A9EJ-01 22 16449720 16449720 G A OR11H1 Missense_Mutation p.L29F 0.22 deleterious(0) benign(0.417) TCGA-V4-A9EJ-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.42 deleterious(0) probably_damaging(1) TCGA-V4-A9EJ-01 4 25836895 25836895 C T SEL1L3 Missense_Mutation p.G262S 0.42 deleterious(0.01) probably_damaging(1) TCGA-V4-A9EJ-01 5 76607856 76607856 G A PDE8B Missense_Mutation p.R126K 0.46 tolerated(0.37) benign(0.338) TCGA-V4-A9EJ-01 5 80408455 80408455 A G RASGRF2 Missense_Mutation p.D622G 0.44 deleterious(0.01) benign(0.297) TCGA-V4-A9EJ-01 8 110412463 110412463 C T PKHD1L1 Missense_Mutation p.R391C 0.21 deleterious(0) probably_damaging(0.991) TCGA-V4-A9EJ-01 8 19362817 19362817 G A CSGALNACT1 Missense_Mutation p.R177W 0.22 deleterious(0) probably_damaging(0.982) TCGA-V4-A9EJ-01 9 106901648 106901648 A G SMC2 3'UTR 0.33 TCGA-V4-A9EJ-01 X 135469898 135469898 G T GPR112 Splice_Site p.X2593_splice 0.95 TCGA-V4-A9EJ-01 X 155004520 155004520 T C SPRY3 3'UTR 0.27 TCGA-V4-A9EK-01 10 118314738 118314738 G A PNLIP Missense_Mutation p.R207Q 0.34 deleterious(0) probably_damaging(1) TCGA-V4-A9EK-01 10 51465015 51465015 C A AGAP7 Missense_Mutation p.G481C 0.12 deleterious(0) probably_damaging(1) TCGA-V4-A9EK-01 1 12711307 12711307 C T AADACL4 Missense_Mutation p.R112W 0.33 tolerated(0.06) benign(0.081) TCGA-V4-A9EK-01 2 190569815 190569815 C G ANKAR Missense_Mutation p.S592C 0.06 tolerated(0.21) benign(0.004) TCGA-V4-A9EK-01 2 228881555 228881555 C T SPHKAP Missense_Mutation p.G1339S 0.20 tolerated(0.31) benign(0.019) TCGA-V4-A9EK-01 2 61433951 61433951 A G USP34 Missense_Mutation p.L2997P 0.24 deleterious(0) probably_damaging(0.959) TCGA-V4-A9EK-01 3 107520041 107520041 G A BBX Missense_Mutation p.R884Q 0.19 tolerated(0.15) probably_damaging(0.992) TCGA-V4-A9EK-01 7 48311887 48311887 A T ABCA13 Missense_Mutation p.Q875L 0.38 benign(0.353) TCGA-V4-A9EK-01 7 82585204 82585204 T - PCLO Frame_Shift_Del p.T1689Qfs*16 0.35 TCGA-V4-A9EK-01 8 121237427 121237427 A G COL14A1 Missense_Mutation p.E613G 0.31 tolerated(0.34) possibly_damaging(0.77) TCGA-V4-A9EK-01 8 141570580 141570580 G A AGO2 Missense_Mutation p.T183I 0.06 deleterious(0) benign(0.158) TCGA-V4-A9EK-01 8 21973890 21973890 C A HR Nonsense_Mutation p.E1144* 0.17 TCGA-V4-A9EK-01 9 131007044 131007044 G A DNM1 Intron 0.35 TCGA-V4-A9EK-01 9 131007062 131007062 G A DNM1 Intron 0.29 TCGA-V4-A9EK-01 9 131007067 131007067 G A DNM1 Intron 0.29 TCGA-V4-A9EK-01 9 131008684 131008684 G A DNM1 Silent p.K561K 0.52 TCGA-V4-A9EK-01 9 131008775 131008775 G A DNM1 Missense_Mutation p.E592K 0.44 deleterious(0.02) probably_damaging(0.952) TCGA-V4-A9EK-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.42 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EK-01 X 31089834 31089834 G T FTHL17 Silent p.G79G 0.16 TCGA-V4-A9EL-01 15 37109490 37109490 C T CSNK1A1P1 Splice_Site 0.29 TCGA-V4-A9EL-01 18 61305232 61305232 C T SERPINB4 Silent p.T298T 0.31 TCGA-V4-A9EL-01 19 50549632 50549632 C - ZNF473 Frame_Shift_Del p.P645Lfs*22 0.34 TCGA-V4-A9EL-01 1 109553777 109553777 G C WDR47 Silent p.S304S 0.37 TCGA-V4-A9EL-01 1 76251938 76251938 T C RABGGTB 5'UTR 0.56 TCGA-V4-A9EL-01 22 29674050 29674050 C G EWSR1 Nonsense_Mutation p.Y92* 0.52 TCGA-V4-A9EL-01 2 141201962 141201962 G A LRP1B Missense_Mutation p.P3411S 0.41 possibly_damaging(0.876) TCGA-V4-A9EL-01 6 159181693 159181693 G A SYTL3 Missense_Mutation p.V444I 0.72 tolerated(0.54) benign(0.001) TCGA-V4-A9EL-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.42 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EM-01 11 118780731 118780731 C T BCL9L 5'UTR 0.30 TCGA-V4-A9EM-01 11 7059980 7059980 C T NLRP14 Missense_Mutation p.R55W 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-V4-A9EM-01 12 6128239 6128239 G C VWF Missense_Mutation p.Q1449E 0.42 tolerated(0.07) benign(0.002) TCGA-V4-A9EM-01 14 55629724 55629724 T C DLGAP5 Missense_Mutation p.N540D 0.11 tolerated_low_confidence(0.39) benign(0.009) TCGA-V4-A9EM-01 16 24946929 24946929 C G ARHGAP17 Missense_Mutation p.A586P 0.43 tolerated(0.41) benign(0.005) TCGA-V4-A9EM-01 16 67692869 67692869 G C ACD Missense_Mutation p.P289A 0.44 tolerated(0.08) benign(0.004) TCGA-V4-A9EM-01 17 74732946 74732969 GTGTGAGTCCGGGGGGCGGCCGTA - SRSF2 In_Frame_Del p.Y92_H99del 0.15 TCGA-V4-A9EM-01 19 17835950 17835951 AG - MAP1S Frame_Shift_Del p.G134Lfs*40 0.17 TCGA-V4-A9EM-01 19 33517480 33517480 A T RHPN2 Missense_Mutation p.S82T 0.42 deleterious(0) probably_damaging(1) TCGA-V4-A9EM-01 19 50939080 50939080 G C MYBPC2 Missense_Mutation p.V53L 0.53 tolerated(1) benign(0.002) TCGA-V4-A9EM-01 1 206904072 206904072 G A MAPKAPK2 Missense_Mutation p.C244Y 0.59 deleterious(0) probably_damaging(0.996) TCGA-V4-A9EM-01 1 210536203 210536203 A T HHAT Missense_Mutation p.E34D 0.27 deleterious(0.01) unknown(0) TCGA-V4-A9EM-01 1 23857136 23857136 C T E2F2 Silent p.P50P 0.11 TCGA-V4-A9EM-01 3 40352412 40352412 C G EIF1B Missense_Mutation p.D20E 0.34 tolerated(0.11) benign(0.002) TCGA-V4-A9EM-01 3 47103828 47103828 G A SETD2 Nonsense_Mutation p.R2040* 0.44 TCGA-V4-A9EM-01 4 109822282 109822282 C G COL25A1 Missense_Mutation p.G276A 0.35 deleterious(0) probably_damaging(0.998) TCGA-V4-A9EM-01 4 78694260 78694260 G A CNOT6L Silent p.F125F 0.18 TCGA-V4-A9EM-01 5 10426521 10426521 G A MARCH6 Missense_Mutation p.R798Q 0.34 deleterious(0.04) probably_damaging(0.971) TCGA-V4-A9EM-01 6 116944015 116944015 A G RSPH4A Silent p.Q257Q 0.27 TCGA-V4-A9EM-01 8 90982757 90982757 A G NBN Missense_Mutation p.F244S 0.17 deleterious(0) benign(0.117) TCGA-V4-A9EM-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.55 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EO-01 12 102576331 102576331 C G PARPBP Missense_Mutation p.P397A 0.42 deleterious(0.01) probably_damaging(1) TCGA-V4-A9EO-01 12 114823293 114823293 G C TBX5 Nonsense_Mutation p.S248* 0.44 TCGA-V4-A9EO-01 16 67327540 67327540 C T KCTD19 Missense_Mutation p.D709N 0.29 tolerated(0.05) benign(0.103) TCGA-V4-A9EO-01 16 89831391 89831391 G C FANCA Silent p.P895P 0.11 TCGA-V4-A9EO-01 17 18024984 18024984 C G MYO15A Missense_Mutation p.P957R 0.35 unknown(0) TCGA-V4-A9EO-01 18 33952644 33952644 C T FHOD3 Missense_Mutation p.R92W 0.52 deleterious(0) probably_damaging(0.992) TCGA-V4-A9EO-01 19 51530847 51530847 C A KLK11 5'UTR 0.33 TCGA-V4-A9EO-01 19 55494140 55494140 C T NLRP2 Silent p.G358G 0.28 TCGA-V4-A9EO-01 1 169509628 169509628 A G F5 Missense_Mutation p.I1567T 0.59 tolerated(0.1) possibly_damaging(0.854) TCGA-V4-A9EO-01 20 35443784 35443784 G A SOGA1 Silent p.N687N 0.46 TCGA-V4-A9EO-01 20 51873020 51873020 C A TSHZ2 Missense_Mutation p.A1008E 0.05 deleterious(0) probably_damaging(1) TCGA-V4-A9EO-01 20 62236107 62236107 T C GMEB2 Missense_Mutation p.E73G 0.34 deleterious(0) benign(0.23) TCGA-V4-A9EO-01 2 131519652 131519652 C T AMER3 Silent p.L3L 0.29 TCGA-V4-A9EO-01 2 96971216 96971216 T C SNRNP200 5'UTR 0.23 TCGA-V4-A9EO-01 3 125223532 125223532 T G SNX4 Missense_Mutation p.E66D 0.95 deleterious(0.01) possibly_damaging(0.651) TCGA-V4-A9EO-01 3 52436620 52436620 T A BAP1 Missense_Mutation p.E685V 0.98 deleterious(0) probably_damaging(0.987) TCGA-V4-A9EO-01 4 6050593 6050593 C A JAKMIP1 Silent p.L673L 0.06 TCGA-V4-A9EO-01 8 126094695 126094695 A G KIAA0196 Missense_Mutation p.L116P 0.50 deleterious(0) probably_damaging(1) TCGA-V4-A9EO-01 8 69000029 69000029 C T PREX2 Missense_Mutation p.H700Y 0.28 tolerated(0.3) probably_damaging(0.994) TCGA-V4-A9EO-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.32 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EQ-01 11 123988499 123988499 A G VWA5A Missense_Mutation p.M55V 0.43 tolerated(0.11) benign(0.029) TCGA-V4-A9EQ-01 14 22314952 22314952 G C TRAV8-2 Silent p.L3L 0.39 TCGA-V4-A9EQ-01 17 42335930 42335930 C A SLC4A1 Missense_Mutation p.G313V 0.46 deleterious(0.03) possibly_damaging(0.833) TCGA-V4-A9EQ-01 17 67119475 67119475 A G ABCA6 Silent p.N447N 0.33 TCGA-V4-A9EQ-01 18 13885067 13885067 G A MC2R Missense_Mutation p.L151F 0.46 deleterious(0) probably_damaging(1) TCGA-V4-A9EQ-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.35 deleterious(0) probably_damaging(0.911) TCGA-V4-A9EQ-01 2 62066857 62066857 T C FAM161A Missense_Mutation p.T428A 0.36 tolerated(0.14) benign(0.011) TCGA-V4-A9EQ-01 3 132411619 132411619 G A NPHP3 Missense_Mutation p.S785L 0.93 tolerated(0.13) benign(0.075) TCGA-V4-A9EQ-01 3 51417579 51417579 G A DOCK3 Missense_Mutation p.A1842T 0.90 tolerated_low_confidence(0.21) benign(0.035) TCGA-V4-A9EQ-01 5 145427382 145427382 C T SH3RF2 Silent p.A369A 0.54 TCGA-V4-A9EQ-01 5 180432727 180432727 C T BTNL3 Missense_Mutation p.S419F 0.49 deleterious(0.02) possibly_damaging(0.774) TCGA-V4-A9EQ-01 6 11213718 11213718 G A NEDD9 Silent p.T85T 0.38 TCGA-V4-A9EQ-01 6 52849353 52849353 A T GSTA4 Missense_Mutation p.M108K 0.42 tolerated(0.19) benign(0.046) TCGA-V4-A9ES-01 11 6943043 6943043 G A OR2D3 Missense_Mutation p.G271R 0.51 deleterious(0) possibly_damaging(0.824) TCGA-V4-A9ES-01 12 54651299 54651299 C T CBX5 Missense_Mutation p.E46K 0.38 deleterious(0.01) possibly_damaging(0.685) TCGA-V4-A9ES-01 15 90799479 90799479 C T TTLL13 Missense_Mutation p.R219W 1.00 deleterious(0) benign(0.064) TCGA-V4-A9ES-01 16 57789768 57789768 G T KATNB1 Missense_Mutation p.A528S 0.15 deleterious(0.01) possibly_damaging(0.868) TCGA-V4-A9ES-01 19 9578390 9578390 T A ZNF560 Missense_Mutation p.K411N 0.48 tolerated(0.12) probably_damaging(0.937) TCGA-V4-A9ES-01 22 32215199 32215199 A G DEPDC5 Missense_Mutation p.T620A 0.50 tolerated(0.12) probably_damaging(0.995) TCGA-V4-A9ES-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.35 deleterious(0) probably_damaging(1) TCGA-V4-A9ES-01 2 74842189 74842189 C G M1AP Missense_Mutation p.A110P 0.51 tolerated(0.2) benign(0.246) TCGA-V4-A9ES-01 6 17541321 17541321 C A CAP2 Missense_Mutation p.S315Y 0.32 deleterious(0.02) benign(0.396) TCGA-V4-A9ES-01 9 77390841 77390841 G C TRPM6 Missense_Mutation p.H1121D 0.26 deleterious(0.03) benign(0.104) TCGA-V4-A9ES-01 9 80412493 80412493 C T GNAQ Missense_Mutation p.R183Q 0.57 deleterious(0.03) probably_damaging(1) TCGA-V4-A9ES-01 X 39932447 39932447 C G BCOR Missense_Mutation p.D718H 0.55 deleterious(0) probably_damaging(0.999) TCGA-V4-A9ET-01 10 100147057 100147057 A G PYROXD2 Silent p.D485D 0.44 TCGA-V4-A9ET-01 10 68687631 68687631 T A LRRTM3 Missense_Mutation p.N319K 0.19 tolerated(0.49) benign(0.015) TCGA-V4-A9ET-01 15 45884472 45884472 C T BLOC1S6 Silent p.L74L 0.46 TCGA-V4-A9ET-01 16 436921 436922 - CGCC TMEM8A 5'Flank 0.50 TCGA-V4-A9ET-01 17 74732610 74732610 G A MFSD11 5'UTR 0.25 TCGA-V4-A9ET-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.43 deleterious(0) probably_damaging(0.911) TCGA-V4-A9ET-01 2 220033409 220033409 G C SLC23A3 Silent p.A221A 0.36 TCGA-V4-A9ET-01 3 179448030 179448030 A T USP13 Missense_Mutation p.Q381L 0.41 tolerated(0.07) benign(0.312) TCGA-V4-A9ET-01 3 49716365 49716365 G A APEH Missense_Mutation p.A381T 0.05 tolerated(0.2) benign(0.082) TCGA-V4-A9ET-01 5 140554267 140554267 G A PCDHB7 Silent p.V617V 0.17 TCGA-V4-A9ET-01 7 123190629 123190629 T A NDUFA5 Silent p.I26I 0.09 TCGA-V4-A9ET-01 8 113694820 113694820 G A CSMD3 Missense_Mutation p.A843V 0.18 deleterious(0) probably_damaging(0.985) TCGA-V4-A9ET-01 8 144893362 144893362 G T SCRIB Missense_Mutation p.L354M 0.14 probably_damaging(1) TCGA-V4-A9ET-01 9 139734309 139734309 G C RABL6 Missense_Mutation p.S642T 0.73 deleterious_low_confidence(0.01) unknown(0) TCGA-V4-A9EU-01 10 15263054 15263054 A G FAM171A1 Missense_Mutation p.W254R 0.39 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EU-01 11 60468456 60468456 G A MS4A8 Silent p.P41P 0.39 TCGA-V4-A9EU-01 12 132624744 132624744 C T DDX51 Silent p.L558L 0.50 TCGA-V4-A9EU-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.26 deleterious(0) probably_damaging(0.911) TCGA-V4-A9EU-01 1 169256568 169256568 T C NME7 Missense_Mutation p.I243V 0.46 tolerated(0.37) benign(0.009) TCGA-V4-A9EU-01 1 39798840 39798840 C G MACF1 Intron 0.44 TCGA-V4-A9EU-01 20 44672542 44672542 C T SLC12A5 Missense_Mutation p.A478V 0.36 deleterious(0.01) possibly_damaging(0.85) TCGA-V4-A9EU-01 2 219603802 219603802 G A TTLL4 Missense_Mutation p.R468H 0.53 tolerated(0.2) benign(0.007) TCGA-V4-A9EU-01 3 113675265 113675265 G C ZDHHC23 Missense_Mutation p.G318R 0.90 deleterious(0) probably_damaging(1) TCGA-V4-A9EU-01 3 52437840 52437840 G A BAP1 Nonsense_Mutation p.Q441* 0.90 TCGA-V4-A9EU-01 5 78260295 78260295 T C ARSB Missense_Mutation p.T212A 0.53 tolerated(0.1) benign(0.166) TCGA-V4-A9EU-01 6 90486405 90486405 A G MDN1 Missense_Mutation p.C579R 0.15 probably_damaging(0.995) TCGA-V4-A9EV-01 14 30108044 30108044 G A PRKD1 Nonsense_Mutation p.R255* 0.40 TCGA-V4-A9EV-01 15 41501729 41501729 T C EXD1 Silent p.V110V 0.26 TCGA-V4-A9EV-01 15 72637911 72637911 T C HEXA Intron 0.33 TCGA-V4-A9EV-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.26 deleterious(0) probably_damaging(0.911) TCGA-V4-A9EV-01 19 55174353 55174353 T A LILRB4 5'UTR 0.40 TCGA-V4-A9EV-01 22 19343354 19343354 C T HIRA Silent p.T830T 0.32 TCGA-V4-A9EV-01 3 142840445 142840445 C T CHST2 Missense_Mutation p.L263F 0.80 tolerated(0.06) benign(0.154) TCGA-V4-A9EV-01 4 100870470 100870470 G A H2AFZ Missense_Mutation p.A52V 0.34 deleterious(0.03) possibly_damaging(0.475) TCGA-V4-A9EV-01 5 142780179 142780179 G A NR3C1 Missense_Mutation p.P76S 0.42 deleterious_low_confidence(0.01) benign(0.347) TCGA-V4-A9EV-01 6 152763338 152763338 G A SYNE1 Nonsense_Mutation p.Q1294* 0.29 TCGA-V4-A9EV-01 7 102669190 102669190 C T FBXL13 Nonsense_Mutation p.W25* 0.09 TCGA-V4-A9EV-01 7 65842570 65842570 A T LINC00174 RNA 0.22 TCGA-V4-A9EW-01 10 99625298 99625298 C A CRTAC1 3'UTR 0.15 TCGA-V4-A9EW-01 11 100141958 100141958 C T CNTN5 Missense_Mutation p.R767C 0.41 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EW-01 11 26725463 26725463 G A SLC5A12 Missense_Mutation p.A186V 0.49 tolerated(1) benign(0.303) TCGA-V4-A9EW-01 11 47261683 47261683 C T ACP2 Missense_Mutation p.G419E 0.10 tolerated_low_confidence(0.06) benign(0.01) TCGA-V4-A9EW-01 14 24589052 24589052 C T DCAF11 Missense_Mutation p.P347S 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-V4-A9EW-01 15 41099958 41099958 A G ZFYVE19 Silent p.P57P 0.34 TCGA-V4-A9EW-01 16 67976291 67976291 G A LCAT Silent p.I241I 0.14 TCGA-V4-A9EW-01 17 41143307 41143307 G A RUNDC1 Silent p.P472P 0.16 TCGA-V4-A9EW-01 19 54705418 54705418 G A RPS9 Missense_Mutation p.R54H 0.15 deleterious(0.04) possibly_damaging(0.826) TCGA-V4-A9EW-01 1 246823587 246823587 A G CNST Silent p.P641P 0.36 TCGA-V4-A9EW-01 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.40 deleterious(0) probably_damaging(1) TCGA-V4-A9EW-01 8 110503272 110503286 ATTTGGGACAGATGG - PKHD1L1 In_Frame_Del p.F3353_G3357del 0.12 TCGA-V4-A9EW-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.40 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EW-01 X 43703012 43703012 T A MAOB Splice_Site p.X16_splice 0.18 TCGA-V4-A9EX-01 11 5968660 5968660 G A OR56A3 Silent p.Q28Q 0.06 TCGA-V4-A9EX-01 12 32137648 32137648 C T KIAA1551 Silent p.D1253D 0.39 TCGA-V4-A9EX-01 12 6439098 6439098 G A TNFRSF1A Silent p.P301P 0.62 TCGA-V4-A9EX-01 15 51791218 51791219 - A DMXL2 Frame_Shift_Ins p.S1402Kfs*21 0.31 TCGA-V4-A9EX-01 19 53473365 53473365 G C ZNF702P RNA 0.19 TCGA-V4-A9EX-01 1 144856945 144856945 G A PDE4DIP Silent p.V2180V 0.26 TCGA-V4-A9EX-01 1 26655240 26655240 C T AIM1L Missense_Mutation p.R606Q 0.31 tolerated(0.43) benign(0.017) TCGA-V4-A9EX-01 20 50090554 50090554 G T NFATC2 Silent p.I557I 0.07 TCGA-V4-A9EX-01 2 220086024 220086024 G C ATG9A Missense_Mutation p.L716V 0.31 tolerated(0.11) benign(0.02) TCGA-V4-A9EX-01 3 47454066 47454066 T C PTPN23 Silent p.H1460H 0.79 TCGA-V4-A9EX-01 3 52443574 52443574 G A BAP1 Nonsense_Mutation p.Q40* 0.80 TCGA-V4-A9EX-01 6 133105166 133105166 C T SLC18B1 Silent p.L188L 0.19 TCGA-V4-A9EX-01 6 138608050 138608050 C G KIAA1244 Missense_Mutation p.L928V 0.40 deleterious(0) probably_damaging(0.997) TCGA-V4-A9EX-01 9 3856041 3856041 G A GLIS3 Missense_Mutation p.S814F 0.47 tolerated(0.42) possibly_damaging(0.776) TCGA-V4-A9EX-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.47 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EY-01 11 1651866 1651866 C T KRTAP5-5 3'UTR 0.58 TCGA-V4-A9EY-01 14 52781318 52781318 T C PTGER2 Missense_Mutation p.W18R 0.36 tolerated(0.39) benign(0.096) TCGA-V4-A9EY-01 15 65347374 65347374 T G RASL12 Missense_Mutation p.N222H 0.40 tolerated_low_confidence(0.23) benign(0.024) TCGA-V4-A9EY-01 17 3513993 3513993 G A SHPK Missense_Mutation p.A433V 0.52 tolerated(0.08) probably_damaging(0.999) TCGA-V4-A9EY-01 19 54802705 54802705 A T LILRA3 Missense_Mutation p.C246S 0.35 deleterious(0) possibly_damaging(0.901) TCGA-V4-A9EY-01 1 28555506 28555506 A G DNAJC8 Missense_Mutation p.V36A 0.45 tolerated(0.08) benign(0.138) TCGA-V4-A9EY-01 1 6214772 6214772 C T CHD5 Silent p.P231P 0.45 TCGA-V4-A9EY-01 20 45014869 45014869 G C ELMO2 Missense_Mutation p.Q191E 0.27 tolerated(0.12) possibly_damaging(0.449) TCGA-V4-A9EY-01 2 149528843 149528843 A G EPC2 Missense_Mutation p.Q536R 0.43 tolerated(0.14) benign(0.007) TCGA-V4-A9EY-01 2 219093472 219093472 G A ARPC2 Missense_Mutation p.V41I 0.49 deleterious(0.02) benign(0.111) TCGA-V4-A9EY-01 2 33952778 33952778 C T AC009499.1 Intron 0.11 TCGA-V4-A9EY-01 3 134076564 134076564 C T AMOTL2 Missense_Mutation p.V776M 0.35 deleterious(0) probably_damaging(0.998) TCGA-V4-A9EY-01 5 112170678 112170678 T G APC Missense_Mutation p.L592V 0.47 benign(0.332) TCGA-V4-A9EY-01 7 103205756 103205756 G C RELN Missense_Mutation p.R1727G 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-V4-A9EY-01 9 139276418 139276418 C A SNAPC4 Missense_Mutation p.Q725H 0.41 tolerated(0.22) possibly_damaging(0.541) TCGA-V4-A9EY-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.54 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EY-01 X 20156735 20156735 C T EIF1AX Missense_Mutation p.G8R 0.41 deleterious(0.03) unknown(0) TCGA-V4-A9EY-01 X 53589168 53589170 CTC - HUWE1 In_Frame_Del p.E2414del 0.27 TCGA-V4-A9EZ-01 10 95191210 95191210 C T MYOF Silent p.P100P 0.46 TCGA-V4-A9EZ-01 11 124440297 124440297 C T OR8A1 Silent p.Y111Y 0.43 TCGA-V4-A9EZ-01 11 34489856 34489856 G A CAT Missense_Mutation p.V450M 0.41 deleterious(0.02) possibly_damaging(0.904) TCGA-V4-A9EZ-01 12 8248277 8248277 G A NECAP1 Missense_Mutation p.G253R 0.35 deleterious(0) probably_damaging(0.984) TCGA-V4-A9EZ-01 16 22580489 22580489 G A RP11-368J21.3 RNA 0.15 TCGA-V4-A9EZ-01 17 33679640 33679640 C T SLFN11 Missense_Mutation p.S814N 0.39 tolerated(0.11) benign(0.079) TCGA-V4-A9EZ-01 17 4536775 4536775 T A ALOX15 Silent p.R394R 0.25 TCGA-V4-A9EZ-01 18 28712574 28712574 T - DSC1 Frame_Shift_Del p.N732Ifs*2 0.30 TCGA-V4-A9EZ-01 19 46056952 46056952 G A OPA3 Intron 0.08 TCGA-V4-A9EZ-01 19 8389559 8389559 C T KANK3 Silent p.R746R 0.35 TCGA-V4-A9EZ-01 1 226108959 226108959 C T RP4-559A3.7 Missense_Mutation p.G175D 0.50 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-V4-A9EZ-01 20 60511888 60511888 G A CDH4 Missense_Mutation p.V880I 0.09 tolerated(0.27) possibly_damaging(0.658) TCGA-V4-A9EZ-01 21 43411430 43411430 C T ZBTB21 Silent p.E925E 0.28 TCGA-V4-A9EZ-01 22 21134429 21134429 G C SERPIND1 Missense_Mutation p.A277P 0.48 tolerated(0.25) benign(0.394) TCGA-V4-A9EZ-01 2 172841177 172841177 G A HAT1 Missense_Mutation p.R302Q 0.07 tolerated(0.33) benign(0) TCGA-V4-A9EZ-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.42 deleterious(0) probably_damaging(1) TCGA-V4-A9EZ-01 3 119156948 119156948 A T TMEM39A Missense_Mutation p.F193Y 0.44 deleterious(0.01) probably_damaging(0.97) TCGA-V4-A9EZ-01 4 159638314 159638314 G A PPID Silent p.G124G 0.33 TCGA-V4-A9EZ-01 5 167689135 167689135 C A TENM2 Missense_Mutation p.L2549I 0.08 tolerated(0.37) benign(0.09) TCGA-V4-A9EZ-01 7 47440411 47440411 C G TNS3 Missense_Mutation p.G275A 0.21 tolerated(0.08) benign(0.068) TCGA-V4-A9EZ-01 7 57188369 57188369 G A ZNF479 Silent p.S251S 0.47 TCGA-V4-A9EZ-01 8 121216019 121216019 G A COL14A1 Missense_Mutation p.V317I 0.20 deleterious(0) probably_damaging(0.997) TCGA-V4-A9EZ-01 9 112899621 112899621 G T PALM2-AKAP2 Silent p.L599L 0.34 TCGA-V4-A9EZ-01 9 74312944 74312944 G A TMEM2 Missense_Mutation p.P1185L 0.05 deleterious(0) possibly_damaging(0.892) TCGA-V4-A9EZ-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.57 deleterious(0) probably_damaging(0.999) TCGA-V4-A9EZ-01 X 153175798 153175798 C T ARHGAP4 Silent p.G701G 0.46 TCGA-V4-A9EZ-01 X 55033295 55033295 C A APEX2 Missense_Mutation p.F328L 0.27 tolerated(0.08) benign(0.099) TCGA-V4-A9F0-01 12 118533585 118533585 C A VSIG10 Missense_Mutation p.E38D 0.22 tolerated(0.27) benign(0.03) TCGA-V4-A9F0-01 12 123476344 123476344 C T PITPNM2 Intron 0.38 TCGA-V4-A9F0-01 19 52794539 52794539 G A ZNF766 3'UTR 0.12 TCGA-V4-A9F0-01 19 8620657 8620657 C T MYO1F Nonsense_Mutation p.W9* 0.09 TCGA-V4-A9F0-01 1 1718829 1718829 C G GNB1 Missense_Mutation p.D322H 0.30 deleterious(0.01) possibly_damaging(0.581) TCGA-V4-A9F0-01 1 231299743 231299743 T C TRIM67 Missense_Mutation p.M343T 0.27 tolerated(0.2) benign(0.001) TCGA-V4-A9F0-01 20 24952175 24952175 C T APMAP Silent p.L153L 0.06 TCGA-V4-A9F0-01 3 52437791 52437795 TTCTG CTCT BAP1 Frame_Shift_Del p.Q456Rfs*115 0.41 TCGA-V4-A9F0-01 5 150411884 150411884 C G TNIP1 Missense_Mutation p.V614L 0.53 tolerated_low_confidence(0.06) benign(0.183) TCGA-V4-A9F0-01 8 110984746 110984746 G C KCNV1 Missense_Mutation p.I244M 0.30 tolerated(0.31) benign(0.382) TCGA-V4-A9F0-01 9 12704605 12704606 - GG TYRP1 Frame_Shift_Ins p.Q390Dfs*27 0.19 TCGA-V4-A9F0-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.45 deleterious(0) probably_damaging(0.999) TCGA-V4-A9F1-01 11 722155 722155 C T EPS8L2 Missense_Mutation p.P350L 0.30 deleterious(0) probably_damaging(1) TCGA-V4-A9F1-01 19 43411102 43411102 G T PSG6 Silent p.I404I 0.37 TCGA-V4-A9F1-01 19 6684417 6684417 A G C3 Missense_Mutation p.I1385T 0.43 tolerated(0.52) benign(0.001) TCGA-V4-A9F1-01 1 12711246 12711246 C T AADACL4 Silent p.D91D 0.45 TCGA-V4-A9F1-01 1 156146412 156146412 C G SEMA4A Missense_Mutation p.S637C 0.35 deleterious(0.01) probably_damaging(0.96) TCGA-V4-A9F1-01 1 24019228 24019229 - AG RPL11 Frame_Shift_Ins p.T47Rfs*42 0.30 TCGA-V4-A9F1-01 1 242264008 242264008 C T PLD5 Missense_Mutation p.R439H 0.35 tolerated(1) benign(0.015) TCGA-V4-A9F1-01 2 233323457 233323457 C T ALPI Silent p.S433S 0.46 TCGA-V4-A9F1-01 3 52443593 52443593 G C BAP1 Nonsense_Mutation p.Y33* 0.72 TCGA-V4-A9F1-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.38 deleterious(0) probably_damaging(0.999) TCGA-V4-A9F1-01 X 132351713 132351713 T C TFDP3 Missense_Mutation p.N192S 0.42 tolerated(0.18) benign(0.001) TCGA-V4-A9F2-01 11 73021064 73021064 T G ARHGEF17 Missense_Mutation p.S461A 0.20 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-V4-A9F2-01 12 27863872 27863872 C T MRPS35 Silent p.V32V 0.45 TCGA-V4-A9F2-01 12 75897718 75897718 T C KRR1 Missense_Mutation p.Y266C 0.05 deleterious(0) probably_damaging(1) TCGA-V4-A9F2-01 1 16767192 16767192 C T NECAP2 5'Flank 0.43 TCGA-V4-A9F2-01 1 226923298 226923298 C G ITPKB Missense_Mutation p.S621T 0.56 deleterious(0) probably_damaging(0.989) TCGA-V4-A9F2-01 6 27798982 27798982 A C HIST1H4K 3'UTR 0.62 TCGA-V4-A9F2-01 9 35846950 35846950 G A TMEM8B Silent p.V259V 0.10 TCGA-V4-A9F2-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.44 deleterious(0) probably_damaging(0.999) TCGA-V4-A9F2-01 X 70468373 70468373 C T ZMYM3 Missense_Mutation p.R580H 0.25 tolerated(0.17) benign(0.007) TCGA-V4-A9F3-01 10 105073982 105073983 - A PCGF6 Frame_Shift_Ins p.R320Kfs*9 0.20 TCGA-V4-A9F3-01 11 87882992 87882992 A C RAB38 Missense_Mutation p.L112V 0.32 tolerated(1) benign(0.015) TCGA-V4-A9F3-01 12 108133200 108133200 G A PRDM4 Missense_Mutation p.R685W 0.06 deleterious(0) probably_damaging(0.988) TCGA-V4-A9F3-01 14 106235678 106235678 T C IGHG3 Missense_Mutation p.K344E 0.05 deleterious(0) possibly_damaging(0.836) TCGA-V4-A9F3-01 19 2852695 2852695 G A ZNF555 Missense_Mutation p.R211H 0.36 tolerated(0.54) possibly_damaging(0.83) TCGA-V4-A9F3-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.39 deleterious(0) probably_damaging(0.911) TCGA-V4-A9F3-01 1 159901298 159901298 G A IGSF9 Silent p.C486C 0.08 TCGA-V4-A9F3-01 20 36954747 36954747 C G BPI Silent p.T362T 0.47 TCGA-V4-A9F3-01 2 27263729 27263729 T G TMEM214 3'UTR 0.33 TCGA-V4-A9F3-01 4 55153609 55153609 G A PDGFRA Missense_Mutation p.V859M 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-V4-A9F3-01 5 170863117 170863117 C T FGF18 Silent p.N30N 0.17 TCGA-V4-A9F3-01 7 128486478 128486478 G C FLNC Missense_Mutation p.G1363A 0.29 tolerated(0.27) probably_damaging(1) TCGA-V4-A9F4-01 10 12867686 12867686 G A CAMK1D Missense_Mutation p.D346N 0.04 tolerated(0.18) benign(0.075) TCGA-V4-A9F4-01 11 3380662 3380662 C T ZNF195 Missense_Mutation p.E526K 0.43 tolerated(0.05) probably_damaging(0.968) TCGA-V4-A9F4-01 11 77911266 77911266 G A USP35 Missense_Mutation p.E342K 0.19 deleterious(0) unknown(0) TCGA-V4-A9F4-01 12 123311023 123311023 A T CCDC62 3'UTR 0.08 TCGA-V4-A9F4-01 14 45668011 45668011 G T FANCM Missense_Mutation p.V1961F 0.33 deleterious(0.01) benign(0.079) TCGA-V4-A9F4-01 15 56208903 56208903 T C NEDD4 Missense_Mutation p.T43A 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-V4-A9F4-01 17 39767698 39767698 G A KRT16 Missense_Mutation p.R224C 0.06 tolerated(0.06) possibly_damaging(0.479) TCGA-V4-A9F4-01 17 79848635 79848635 G A ALYREF Missense_Mutation p.A107V 0.07 tolerated(0.1) benign(0.244) TCGA-V4-A9F4-01 1 28339771 28339771 T C EYA3 Missense_Mutation p.Q207R 0.46 deleterious(0) probably_damaging(0.924) TCGA-V4-A9F4-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.40 deleterious(0) probably_damaging(1) TCGA-V4-A9F4-01 2 29297043 29297043 G A C2orf71 Missense_Mutation p.R29W 0.20 deleterious(0) possibly_damaging(0.784) TCGA-V4-A9F4-01 2 97031759 97031759 C A NCAPH Missense_Mutation p.T615K 0.07 deleterious(0.01) possibly_damaging(0.667) TCGA-V4-A9F4-01 3 74535622 74535622 T G CNTN3 Missense_Mutation p.K115Q 0.22 tolerated(0.1) benign(0.244) TCGA-V4-A9F4-01 4 5735137 5735137 C T EVC Missense_Mutation p.T226M 0.15 deleterious(0.04) benign(0.075) TCGA-V4-A9F4-01 5 168175312 168175312 G A SLIT3 Silent p.T755T 0.21 TCGA-V4-A9F4-01 6 149901014 149901014 C T GINM1 Silent p.N158N 0.15 TCGA-V4-A9F4-01 6 30919829 30919829 C G DPCR1 Missense_Mutation p.C1196W 0.24 tolerated(0.09) possibly_damaging(0.851) TCGA-V4-A9F4-01 6 30919895 30919895 C G DPCR1 Silent p.T1218T 0.26 TCGA-V4-A9F4-01 6 30919999 30919999 C G DPCR1 Missense_Mutation p.S1253C 0.24 deleterious(0) probably_damaging(0.983) TCGA-V4-A9F4-01 6 30920102 30920102 C G DPCR1 Missense_Mutation p.I1287M 0.30 tolerated(0.17) benign(0.368) TCGA-V4-A9F4-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.45 deleterious(0) probably_damaging(0.999) TCGA-V4-A9F5-01 14 56094706 56094706 A G KTN1 Missense_Mutation p.D347G 0.44 deleterious(0.01) benign(0.304) TCGA-V4-A9F5-01 14 57676363 57676363 T C EXOC5 Silent p.Q620Q 0.35 TCGA-V4-A9F5-01 17 79827106 79827106 G A ARHGDIA Nonsense_Mutation p.R120* 0.46 TCGA-V4-A9F5-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.46 deleterious(0) probably_damaging(0.911) TCGA-V4-A9F5-01 19 36399082 36399082 G A TYROBP Silent p.L17L 0.19 TCGA-V4-A9F5-01 19 6710848 6710848 G T C3 Missense_Mutation p.N496K 0.60 deleterious(0.01) possibly_damaging(0.9) TCGA-V4-A9F5-01 1 118477140 118477140 C T WDR3 Silent p.C72C 0.05 TCGA-V4-A9F5-01 4 187538910 187538910 C T FAT1 Missense_Mutation p.D2944N 0.40 probably_damaging(0.936) TCGA-V4-A9F5-01 5 79032425 79032425 A C CMYA5 Missense_Mutation p.K2613Q 0.47 benign(0.075) TCGA-V4-A9F5-01 6 45870741 45870741 G C CLIC5 3'UTR 0.42 TCGA-V4-A9F5-01 6 70964709 70964709 C T COL9A1 Missense_Mutation p.G541D 1.00 probably_damaging(1) TCGA-V4-A9F7-01 10 94452507 94452507 C T HHEX Nonsense_Mutation p.Q197* 0.36 TCGA-V4-A9F7-01 11 5020297 5020297 C A OR51L1 Missense_Mutation p.L29I 0.07 tolerated(1) benign(0.003) TCGA-V4-A9F7-01 12 48372483 48372483 G T COL2A1 Missense_Mutation p.A931D 0.50 unknown(0) TCGA-V4-A9F7-01 14 104169547 104169547 A G XRCC3 Missense_Mutation p.F175S 0.50 deleterious(0) benign(0.102) TCGA-V4-A9F7-01 16 11846640 11846640 G A ZC3H7A Nonsense_Mutation p.Q871* 0.40 TCGA-V4-A9F7-01 17 79166611 79166611 G A AZI1 Missense_Mutation p.A785V 0.37 tolerated(0.13) benign(0.023) TCGA-V4-A9F7-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.51 deleterious(0) probably_damaging(0.911) TCGA-V4-A9F7-01 19 55993184 55993184 C T ZNF628 Silent p.L208L 0.45 TCGA-V4-A9F7-01 1 1735887 1735887 C T GNB1 Missense_Mutation p.R134H 0.40 deleterious(0.01) benign(0.388) TCGA-V4-A9F7-01 22 50216676 50216676 T C BRD1 Silent p.A430A 0.54 TCGA-V4-A9F7-01 2 44999293 44999293 A G CAMKMT 3'UTR 0.54 TCGA-V4-A9F7-01 3 170781589 170781589 T C TNIK 3'UTR 0.33 TCGA-V4-A9F7-01 7 21611562 21611562 A G DNAH11 Missense_Mutation p.T522A 0.58 benign(0.007) TCGA-V4-A9F7-01 8 144887324 144887324 A G SCRIB Silent p.I876I 0.19 TCGA-V4-A9F7-01 9 8389348 8389348 C T PTPRD Missense_Mutation p.A1424T 0.08 deleterious(0) probably_damaging(0.998) TCGA-V4-A9F7-01 9 99711843 99711843 C A HIATL2 Missense_Mutation p.S130I 0.39 deleterious(0) probably_damaging(0.943) TCGA-V4-A9F7-01 X 17744069 17744069 G A NHS Missense_Mutation p.V594I 0.48 tolerated(0.06) probably_damaging(0.997) TCGA-V4-A9F7-01 X 20156713 20156713 C T EIF1AX Missense_Mutation p.G15D 0.22 deleterious(0) unknown(0) TCGA-V4-A9F8-01 11 85397134 85397134 T G CCDC89 Missense_Mutation p.M14L 0.14 deleterious_low_confidence(0.02) benign(0.066) TCGA-V4-A9F8-01 12 50189953 50189953 G A NCKAP5L Missense_Mutation p.R564W 0.48 deleterious(0.02) probably_damaging(0.971) TCGA-V4-A9F8-01 13 93518657 93518658 - T GPC5 Frame_Shift_Ins p.S563Kfs*22 0.36 TCGA-V4-A9F8-01 14 21548919 21548919 G T ARHGEF40 Missense_Mutation p.R825L 0.30 tolerated(0.1) benign(0.414) TCGA-V4-A9F8-01 15 102304470 102304470 G T DNM1P47 RNA 0.14 TCGA-V4-A9F8-01 16 19621674 19621674 A C C16orf62 Silent p.T409T 0.54 TCGA-V4-A9F8-01 17 16320989 16320989 T G TRPV2 Missense_Mutation p.S3A 0.09 tolerated_low_confidence(0.08) benign(0.004) TCGA-V4-A9F8-01 17 18221249 18221249 C A SMCR8 Missense_Mutation p.Q716K 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-V4-A9F8-01 19 38951204 38951204 C T RYR1 Silent p.F850F 0.30 TCGA-V4-A9F8-01 1 211749275 211749275 T C SLC30A1 Missense_Mutation p.I327V 0.41 deleterious(0.01) probably_damaging(0.967) TCGA-V4-A9F8-01 2 172600667 172600667 T C DYNC1I2 Silent p.L549L 0.14 TCGA-V4-A9F8-01 2 220344823 220344823 T C SPEG Missense_Mutation p.I1768T 0.37 probably_damaging(0.934) TCGA-V4-A9F8-01 2 70188896 70188896 T A ASPRV1 5'UTR 0.57 TCGA-V4-A9F8-01 3 118945808 118945808 G A B4GALT4 Missense_Mutation p.R112W 0.67 deleterious(0) probably_damaging(0.976) TCGA-V4-A9F8-01 3 137822328 137822328 G A DZIP1L Silent p.T162T 0.15 TCGA-V4-A9F8-01 3 52442542 52442542 T C BAP1 Missense_Mutation p.D68G 0.92 deleterious(0) benign(0.229) TCGA-V4-A9F8-01 4 40146262 40146262 A C N4BP2 Missense_Mutation p.H1662P 0.52 deleterious(0) probably_damaging(0.999) TCGA-V4-A9F8-01 5 33576198 33576198 G A ADAMTS12 Silent p.G1311G 0.11 TCGA-V4-A9F8-01 5 75969313 75969313 A G IQGAP2 Silent p.T1036T 0.11 TCGA-V4-A9F8-01 6 74134996 74134996 A G MB21D1 Missense_Mutation p.I508T 0.41 deleterious(0) probably_damaging(0.997) TCGA-V4-A9F8-01 6 90327729 90327737 TCTCCTTAC - ANKRD6 In_Frame_Del p.L258_T260del 0.38 TCGA-V4-A9F8-01 7 120609120 120609121 - TAAT ING3 Frame_Shift_Ins p.D259* 0.32 TCGA-V4-A9F8-01 8 145235339 145235339 G A MROH1 Missense_Mutation p.V159I 0.51 deleterious(0) possibly_damaging(0.816) TCGA-V4-A9F8-01 8 56015469 56015469 C T XKR4 Nonsense_Mutation p.Q141* 0.11 TCGA-V4-A9F8-01 8 96064453 96064453 C T NDUFAF6 Nonsense_Mutation p.Q290* 0.42 TCGA-V4-A9F8-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.47 deleterious(0) probably_damaging(0.999) TCGA-V4-A9F8-01 X 70339611 70339611 C T MED12 Missense_Mutation p.P94S 1.00 possibly_damaging(0.858) TCGA-VD-A8K7-01 1 16531277 16531277 G T ARHGEF19 Nonsense_Mutation p.C628* 0.15 TCGA-VD-A8K7-01 1 68697988 68697988 C T WLS 5'UTR 0.14 TCGA-VD-A8K7-01 4 66242760 66242760 C A EPHA5 Silent p.G604G 0.36 TCGA-VD-A8K7-01 6 152527476 152527476 G A SYNE1 Missense_Mutation p.R7616W 0.05 probably_damaging(0.986) TCGA-VD-A8K7-01 7 23651026 23651026 A G CCDC126 Missense_Mutation p.H31R 0.48 tolerated(0.76) benign(0.006) TCGA-VD-A8K7-01 7 23651027 23651027 C T CCDC126 Silent p.H31H 0.47 TCGA-VD-A8K7-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.40 deleterious(0) probably_damaging(0.999) TCGA-VD-A8K8-01 10 95111448 95111448 T A MYOF Missense_Mutation p.M1213L 0.40 tolerated(0.45) benign(0.001) TCGA-VD-A8K8-01 11 113270063 113270063 G T ANKK1 Nonsense_Mutation p.E458* 0.44 TCGA-VD-A8K8-01 11 123886874 123886874 T C OR10G4 Missense_Mutation p.I198T 0.54 tolerated(1) possibly_damaging(0.861) TCGA-VD-A8K8-01 12 13717090 13717090 G A GRIN2B Missense_Mutation p.P1028S 0.37 deleterious(0.04) benign(0.248) TCGA-VD-A8K8-01 14 106067994 106067994 G A IGHE Silent p.S24S 0.50 TCGA-VD-A8K8-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.48 deleterious(0) probably_damaging(0.911) TCGA-VD-A8K8-01 19 36164371 36164371 A T UPK1A Missense_Mutation p.Q131L 0.34 deleterious(0) possibly_damaging(0.597) TCGA-VD-A8K8-01 19 3941074 3941074 G A NMRK2 Missense_Mutation p.R134H 0.05 deleterious(0) probably_damaging(0.963) TCGA-VD-A8K8-01 1 19029758 19029758 A C PAX7 Missense_Mutation p.M375L 0.37 deleterious_low_confidence(0.01) benign(0.042) TCGA-VD-A8K8-01 22 25246302 25246302 A T SGSM1 Missense_Mutation p.N120Y 0.43 tolerated(0.14) benign(0.2) TCGA-VD-A8K8-01 2 190331249 190331249 C A WDR75 Missense_Mutation p.T463K 0.06 deleterious(0) probably_damaging(0.995) TCGA-VD-A8K8-01 3 137484271 137484271 C G SOX14 Silent p.P215P 0.64 TCGA-VD-A8K8-01 3 43596927 43596927 T C ANO10 Missense_Mutation p.Q504R 0.17 tolerated(0.07) probably_damaging(0.984) TCGA-VD-A8K8-01 5 31526492 31526492 T - DROSHA Frame_Shift_Del p.N183Ifs*43 0.37 TCGA-VD-A8K8-01 7 99489863 99489863 C T TRIM4 Missense_Mutation p.V476I 0.28 tolerated(0.3) benign(0.027) TCGA-VD-A8K9-01 11 111636064 111636064 T C PPP2R1B Silent p.A53A 0.49 TCGA-VD-A8K9-01 15 75015195 75015195 G T CYP1A1 Missense_Mutation p.P82T 0.53 tolerated(0.05) probably_damaging(0.998) TCGA-VD-A8K9-01 16 708649 708649 C G WDR90 Missense_Mutation p.P964R 0.35 tolerated(0.35) possibly_damaging(0.522) TCGA-VD-A8K9-01 19 34991049 34991049 C T WTIP Silent p.L390L 0.24 TCGA-VD-A8K9-01 1 152681848 152681848 C T LCE4A Silent p.C99C 0.65 TCGA-VD-A8K9-01 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.50 deleterious(0) probably_damaging(1) TCGA-VD-A8K9-01 5 137028124 137028124 C T KLHL3 Missense_Mutation p.A126T 0.14 deleterious(0) possibly_damaging(0.718) TCGA-VD-A8K9-01 6 157222625 157222625 C A ARID1B Missense_Mutation p.P631Q 1.00 benign(0.041) TCGA-VD-A8K9-01 7 110763686 110763686 A G LRRN3 Silent p.L286L 0.45 TCGA-VD-A8K9-01 8 33230094 33230107 ATCAGTCCTTGAAT - FUT10 Missense_Mutation 0.33 TCGA-VD-A8K9-01 9 72961511 72961511 A G SMC5 Intron 0.41 TCGA-VD-A8K9-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.42 deleterious(0) probably_damaging(0.999) TCGA-VD-A8K9-01 X 83116186 83116186 G T CYLC1 5'UTR 0.18 TCGA-VD-A8KA-01 11 116729379 116729379 G T SIK3 Missense_Mutation p.D828E 0.45 tolerated_low_confidence(0.31) probably_damaging(0.99) TCGA-VD-A8KA-01 11 55594926 55594926 G T OR5L2 Missense_Mutation p.V78L 0.19 tolerated(0.07) benign(0.168) TCGA-VD-A8KA-01 18 12329811 12329811 C T TUBB6 3'Flank 0.48 TCGA-VD-A8KA-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.39 deleterious(0) probably_damaging(0.911) TCGA-VD-A8KA-01 1 152552268 152552268 C T LCE3D Missense_Mutation p.E49K 0.34 tolerated_low_confidence(0.09) unknown(0) TCGA-VD-A8KA-01 1 169698338 169698338 G T SELE Missense_Mutation p.P360Q 0.38 deleterious(0) probably_damaging(1) TCGA-VD-A8KA-01 1 27223862 27223862 G T GPATCH3 Missense_Mutation p.P269Q 0.04 tolerated(0.61) benign(0.004) TCGA-VD-A8KA-01 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.55 deleterious(0) probably_damaging(1) TCGA-VD-A8KA-01 2 216003025 216003025 A G ABCA12 5'UTR 0.29 TCGA-VD-A8KA-01 2 31484502 31484502 C G EHD3 Missense_Mutation p.L335V 0.56 deleterious(0) probably_damaging(0.967) TCGA-VD-A8KA-01 8 81888821 81888821 G T PAG1 Missense_Mutation p.S419R 0.05 deleterious(0) possibly_damaging(0.871) TCGA-VD-A8KA-01 8 81888831 81888831 T G PAG1 Missense_Mutation p.D416A 0.06 deleterious(0) probably_damaging(0.925) TCGA-VD-A8KA-01 8 81889006 81889006 G A PAG1 Missense_Mutation p.L358F 0.11 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KA-01 9 139333192 139333192 A C INPP5E Missense_Mutation p.L227R 0.44 tolerated(0.06) possibly_damaging(0.786) TCGA-VD-A8KA-01 9 35741704 35741704 G A GBA2 Missense_Mutation p.R251C 0.50 deleterious(0) probably_damaging(0.997) TCGA-VD-A8KA-01 9 4125772 4125772 C A GLIS3 Missense_Mutation p.M186I 0.44 tolerated(0.22) benign(0.002) TCGA-VD-A8KB-01 12 123481386 123481386 G T PITPNM2 Missense_Mutation p.P515H 0.46 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KB-01 12 16753678 16753678 C T LMO3 Silent p.K39K 0.47 TCGA-VD-A8KB-01 15 79760547 79760547 C T KIAA1024 Missense_Mutation p.P858S 0.42 deleterious(0) probably_damaging(1) TCGA-VD-A8KB-01 17 34173974 34173974 C T TAF15 3'UTR 0.50 TCGA-VD-A8KB-01 17 39620401 39620401 G A KRT32 Nonsense_Mutation p.Q309* 0.44 TCGA-VD-A8KB-01 17 56435332 56435332 T C RNF43 Missense_Mutation p.N602S 0.37 tolerated_low_confidence(0.66) benign(0.003) TCGA-VD-A8KB-01 1 113255025 113255025 C A PPM1J Missense_Mutation p.A262S 0.14 deleterious(0) probably_damaging(1) TCGA-VD-A8KB-01 1 158686997 158686997 C T OR6K3 Silent p.L303L 0.48 TCGA-VD-A8KB-01 1 183529380 183529380 T G NCF2 Missense_Mutation p.K440T 0.38 tolerated(0.37) benign(0.091) TCGA-VD-A8KB-01 20 57276201 57276201 G A NPEPL1 Missense_Mutation p.S270N 0.62 deleterious(0.01) possibly_damaging(0.506) TCGA-VD-A8KB-01 2 128775359 128775359 C A SAP130 Missense_Mutation p.L107F 0.35 tolerated_low_confidence(0.11) benign(0.113) TCGA-VD-A8KB-01 2 144966218 144966218 G A GTDC1 Missense_Mutation p.T44I 0.16 deleterious(0.02) probably_damaging(0.954) TCGA-VD-A8KB-01 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.40 deleterious(0) probably_damaging(1) TCGA-VD-A8KB-01 2 27804422 27804422 C A C2orf16 Missense_Mutation p.S1661R 0.11 tolerated(0.12) benign(0.059) TCGA-VD-A8KB-01 2 27804437 27804437 T A C2orf16 Silent p.S1666S 0.19 TCGA-VD-A8KB-01 3 38913708 38913708 C T SCN11A Silent p.A1157A 0.49 TCGA-VD-A8KB-01 6 117710788 117710788 G A ROS1 Missense_Mutation p.P495L 0.95 tolerated(0.06) benign(0.092) TCGA-VD-A8KB-01 6 31541546 31541546 T C LTA 3'UTR 0.23 TCGA-VD-A8KB-01 7 139026134 139026134 G A LUC7L2 Missense_Mutation p.A2T 0.40 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-VD-A8KB-01 8 142161751 142161751 G A DENND3 Missense_Mutation p.V217I 0.14 tolerated(0.06) probably_damaging(0.949) TCGA-VD-A8KB-01 9 139820173 139820173 C T TRAF2 Silent p.H442H 0.36 TCGA-VD-A8KB-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.53 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KB-01 X 122769935 122769935 G T THOC2 Silent p.G671G 0.49 TCGA-VD-A8KD-01 11 118888181 118888181 G C RPS25 Silent p.L58L 0.27 TCGA-VD-A8KD-01 15 51350052 51350052 G A TNFAIP8L3 3'UTR 0.12 TCGA-VD-A8KD-01 15 57837822 57837822 G A CGNL1 Missense_Mutation p.R1178Q 0.42 deleterious(0) probably_damaging(0.997) TCGA-VD-A8KD-01 15 72063481 72063481 T G THSD4 Missense_Mutation p.C950G 0.41 deleterious(0) probably_damaging(1) TCGA-VD-A8KD-01 16 24196869 24196869 C T PRKCB Missense_Mutation p.A568V 0.44 deleterious(0) probably_damaging(0.975) TCGA-VD-A8KD-01 18 13096255 13096255 G T CEP192 Missense_Mutation p.W2169L 0.34 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KD-01 19 39971353 39971368 TGCGGCAATCCGCCCG - TIMM50 Frame_Shift_Del p.C57Mfs*122 0.32 TCGA-VD-A8KD-01 1 112999731 112999731 T C CTTNBP2NL Silent p.T539T 0.43 TCGA-VD-A8KD-01 1 161164004 161164004 A C ADAMTS4 Missense_Mutation p.C423W 0.30 deleterious(0) probably_damaging(1) TCGA-VD-A8KD-01 1 24484271 24484271 C T IFNLR1 Silent p.P304P 0.57 TCGA-VD-A8KD-01 1 67845674 67845674 C A IL12RB2 Missense_Mutation p.P575T 0.30 deleterious(0.01) possibly_damaging(0.904) TCGA-VD-A8KD-01 20 9389753 9389753 G T PLCB4 Missense_Mutation p.D630Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-VD-A8KD-01 20 9389754 9389754 A T PLCB4 Missense_Mutation p.D630V 0.39 deleterious(0) probably_damaging(0.917) TCGA-VD-A8KD-01 21 33974532 33974532 G A C21orf59 Intron 0.07 TCGA-VD-A8KD-01 2 112942885 112942885 G A FBLN7 Missense_Mutation p.G306S 0.07 tolerated(0.15) benign(0.114) TCGA-VD-A8KD-01 2 230231716 230231716 C T DNER Missense_Mutation p.V659M 0.33 deleterious(0) probably_damaging(0.971) TCGA-VD-A8KD-01 3 9547848 9547848 C A LHFPL4 Missense_Mutation p.G149V 0.07 deleterious(0) probably_damaging(0.989) TCGA-VD-A8KD-01 4 81123464 81123464 T A PRDM8 Missense_Mutation p.L283H 0.47 deleterious_low_confidence(0.02) benign(0.322) TCGA-VD-A8KD-01 4 94693493 94693493 C T GRID2 Silent p.N956N 0.33 TCGA-VD-A8KD-01 5 131714157 131714157 G T SLC22A5 Missense_Mutation p.G161W 0.36 deleterious(0) probably_damaging(1) TCGA-VD-A8KD-01 5 137750822 137750822 G A KDM3B Silent p.E1067E 0.19 TCGA-VD-A8KD-01 5 9054213 9054213 G A SEMA5A Missense_Mutation p.T892M 0.09 tolerated(0.23) probably_damaging(0.963) TCGA-VD-A8KD-01 6 43111198 43111198 C G PTK7 Silent p.P705P 0.34 TCGA-VD-A8KD-01 7 151329211 151329211 G A PRKAG2 Missense_Mutation p.A233V 0.21 tolerated(0.32) benign(0.014) TCGA-VD-A8KD-01 7 29103844 29103844 C A CPVL Nonsense_Mutation p.E324* 0.31 TCGA-VD-A8KD-01 X 24690760 24690760 G - PCYT1B 5'UTR 0.49 TCGA-VD-A8KE-01 10 93841258 93841258 A G CPEB3 Missense_Mutation p.V563A 0.43 tolerated(0.11) benign(0.022) TCGA-VD-A8KE-01 11 120980087 120980087 G T TECTA Missense_Mutation p.L122F 0.07 deleterious(0) probably_damaging(0.998) TCGA-VD-A8KE-01 12 81101600 81101600 T C MYF6 Silent p.Y34Y 0.06 TCGA-VD-A8KE-01 12 95228505 95228505 G T MIR492 3'Flank 0.42 TCGA-VD-A8KE-01 13 111176287 111176287 T G RAB20 Silent p.R144R 0.42 TCGA-VD-A8KE-01 14 21498873 21498873 G A TPPP2 Missense_Mutation p.V45I 0.50 tolerated(0.08) benign(0.169) TCGA-VD-A8KE-01 14 60933673 60933673 C T C14orf39 Missense_Mutation p.R286K 0.08 tolerated(0.17) possibly_damaging(0.567) TCGA-VD-A8KE-01 17 36971161 36971161 A T CWC25 Silent p.L127L 0.25 TCGA-VD-A8KE-01 17 71193207 71193207 C G COG1 Missense_Mutation p.N243K 0.36 deleterious(0.03) possibly_damaging(0.493) TCGA-VD-A8KE-01 17 73942871 73942871 G A ACOX1 Silent p.H647H 0.12 TCGA-VD-A8KE-01 1 108116776 108116776 A T VAV3 Missense_Mutation p.F799I 0.38 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KE-01 1 207850747 207850747 C T CR1L Silent p.V37V 0.46 TCGA-VD-A8KE-01 20 55758828 55758828 C T BMP7 Missense_Mutation p.R303H 0.07 tolerated(0.06) probably_damaging(0.964) TCGA-VD-A8KE-01 2 179446651 179446651 A C TTN Missense_Mutation p.Y22149D 0.42 TCGA-VD-A8KE-01 3 52537488 52537488 C T STAB1 Missense_Mutation p.P275S 0.10 deleterious(0.03) probably_damaging(0.961) TCGA-VD-A8KE-01 4 134084205 134084205 T C PCDH10 Silent p.S957S 0.39 TCGA-VD-A8KE-01 5 176831398 176831398 T A F12 Missense_Mutation p.I273F 0.35 deleterious(0.04) benign(0.148) TCGA-VD-A8KE-01 5 38496650 38496650 T C LIFR Silent p.V573V 0.47 TCGA-VD-A8KE-01 6 163899930 163899930 T A QKI Splice_Site p.X134_splice 0.13 TCGA-VD-A8KE-01 6 52319006 52319006 C T EFHC1 Silent p.H279H 0.13 TCGA-VD-A8KE-01 8 36692332 36692332 T C KCNU1 Missense_Mutation p.I414T 0.22 deleterious(0) benign(0.372) TCGA-VD-A8KE-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.62 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KE-01 X 20156732 20156732 C G EIF1AX Missense_Mutation p.G9R 0.87 tolerated(0.09) unknown(0) TCGA-VD-A8KF-01 12 72057131 72057131 G T ZFC3H1 Nonsense_Mutation p.S87* 0.43 TCGA-VD-A8KF-01 13 67800083 67800083 G A PCDH9 Silent p.I830I 0.50 TCGA-VD-A8KF-01 14 77857522 77857522 C A SAMD15 Missense_Mutation p.Q654K 0.50 deleterious(0.01) benign(0.01) TCGA-VD-A8KF-01 17 25974373 25974373 G A LGALS9 Missense_Mutation p.R279H 0.05 tolerated(0.1) probably_damaging(0.977) TCGA-VD-A8KF-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.47 deleterious(0) probably_damaging(0.911) TCGA-VD-A8KF-01 1 11983371 11983371 C A KIAA2013 Silent p.G403G 0.10 TCGA-VD-A8KF-01 1 1463226 1463226 G A ATAD3A Missense_Mutation p.A545T 0.06 tolerated(0.07) benign(0.314) TCGA-VD-A8KF-01 3 194081424 194081424 G T LRRC15 Missense_Mutation p.P123T 0.95 deleterious(0.01) probably_damaging(0.941) TCGA-VD-A8KF-01 X 110654210 110654210 C G DCX 5'UTR 0.89 TCGA-VD-A8KG-01 12 7649512 7649512 G C CD163 Missense_Mutation p.S332R 0.62 tolerated(0.46) benign(0.041) TCGA-VD-A8KG-01 17 20108455 20108455 G A SPECC1 Missense_Mutation p.V365I 0.08 tolerated(0.87) benign(0.001) TCGA-VD-A8KG-01 17 7133647 7133647 C T DVL2 Missense_Mutation p.E123K 0.46 deleterious(0.05) probably_damaging(0.995) TCGA-VD-A8KG-01 18 55024275 55024275 G A ST8SIA3 Missense_Mutation p.R145Q 0.35 benign(0.127) TCGA-VD-A8KG-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.45 deleterious(0) probably_damaging(0.911) TCGA-VD-A8KG-01 19 6452345 6452345 C T SLC25A23 Missense_Mutation p.G350D 0.15 deleterious(0) probably_damaging(1) TCGA-VD-A8KG-01 1 17395607 17395607 C A PADI2 Nonsense_Mutation p.E644* 0.39 TCGA-VD-A8KG-01 1 32677692 32677692 G A DCDC2B Silent p.L139L 0.15 TCGA-VD-A8KG-01 1 79383680 79383680 G A ELTD1 Missense_Mutation p.A506V 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-VD-A8KG-01 21 42064866 42064866 A T DSCAM Nonsense_Mutation p.Y126* 0.15 TCGA-VD-A8KG-01 2 222436979 222436990 TGCCAACGCTGC - EPHA4 5'UTR 0.67 TCGA-VD-A8KG-01 2 71351503 71351503 C T MCEE Missense_Mutation p.A71T 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-VD-A8KG-01 3 136141361 136141361 A C STAG1 Nonsense_Mutation p.L643* 0.10 TCGA-VD-A8KG-01 4 69426284 69426284 C T UGT2B17 Missense_Mutation p.A326T 0.20 deleterious(0) possibly_damaging(0.89) TCGA-VD-A8KG-01 5 140174912 140174912 G T PCDHA2 Silent p.V121V 0.09 TCGA-VD-A8KG-01 6 27879977 27879977 C A OR2B2 Missense_Mutation p.G41C 0.27 deleterious(0) probably_damaging(0.998) TCGA-VD-A8KG-01 7 20421427 20421427 T C ITGB8 Silent p.D293D 0.16 TCGA-VD-A8KG-01 8 86389348 86389348 G A CA2 Splice_Site p.X170_splice 0.61 TCGA-VD-A8KG-01 9 113449430 113449430 T C MUSK Silent p.N80N 0.11 TCGA-VD-A8KG-01 X 131212668 131212668 T C FRMD7 Missense_Mutation p.I459M 0.36 tolerated(0.16) benign(0.109) TCGA-VD-A8KG-01 X 53410065 53410065 A G SMC1A Missense_Mutation p.M1028T 0.45 tolerated(0.14) benign(0.058) TCGA-VD-A8KH-01 11 102487572 102487572 G C MMP20 Silent p.P115P 0.42 TCGA-VD-A8KH-01 13 21746793 21746793 A T SKA3 Nonsense_Mutation p.L44* 0.32 TCGA-VD-A8KH-01 13 28562757 28562757 G A URAD Silent p.V6V 0.39 TCGA-VD-A8KH-01 16 765634 765634 C T METRN Missense_Mutation p.A52V 0.24 tolerated(0.05) benign(0.187) TCGA-VD-A8KH-01 17 41180481 41180481 G T RND2 Silent p.V156V 0.41 TCGA-VD-A8KH-01 17 41835968 41835968 G A SOST Missense_Mutation p.P48S 0.40 tolerated(0.62) benign(0.078) TCGA-VD-A8KH-01 17 42477396 42477396 T C GPATCH8 Silent p.K683K 0.42 TCGA-VD-A8KH-01 17 47656053 47656053 G A NXPH3 Silent p.R50R 0.59 TCGA-VD-A8KH-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.52 deleterious(0) probably_damaging(0.911) TCGA-VD-A8KH-01 1 145706743 145706743 C A CD160 Missense_Mutation p.G6C 0.07 deleterious(0) probably_damaging(0.984) TCGA-VD-A8KH-01 1 228521350 228521350 G A OBSCN Missense_Mutation p.R6265H 0.24 benign(0.007) TCGA-VD-A8KH-01 20 34241273 34241273 G T RBM12 Missense_Mutation p.P658T 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.447) TCGA-VD-A8KH-01 22 35811891 35811891 C T MCM5 Missense_Mutation p.R425W 0.40 deleterious(0) probably_damaging(0.998) TCGA-VD-A8KH-01 22 51040256 51040256 A C MAPK8IP2 Missense_Mutation p.E35A 0.27 deleterious(0) probably_damaging(0.991) TCGA-VD-A8KH-01 2 171356174 171356174 C T MYO3B Missense_Mutation p.H1049Y 0.43 deleterious(0) possibly_damaging(0.897) TCGA-VD-A8KH-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.40 deleterious(0) probably_damaging(1) TCGA-VD-A8KH-01 7 100460341 100460342 - T SLC12A9 Frame_Shift_Ins p.A584Vfs*51 0.28 TCGA-VD-A8KH-01 8 71050447 71050447 C T NCOA2 Missense_Mutation p.S1050N 0.55 tolerated(1) benign(0.001) TCGA-VD-A8KH-01 8 8998589 8998589 C T PPP1R3B Silent p.T191T 0.44 TCGA-VD-A8KH-01 X 104463874 104463874 G A TEX13A Silent p.S334S 0.08 TCGA-VD-A8KH-01 X 8699907 8699907 C A KAL1 Missense_Mutation p.Q57H 0.91 tolerated(1) benign(0) TCGA-VD-A8KI-01 11 113102955 113102955 C T NCAM1 Missense_Mutation p.T484I 0.41 deleterious(0) probably_damaging(0.953) TCGA-VD-A8KI-01 11 117079632 117079632 C T PCSK7 Missense_Mutation p.A558T 0.26 tolerated(0.41) benign(0.034) TCGA-VD-A8KI-01 11 124789907 124789907 A G HEPN1 Silent p.L87L 0.35 TCGA-VD-A8KI-01 13 21562730 21562730 G A LATS2 Missense_Mutation p.R397W 0.36 deleterious_low_confidence(0) benign(0.425) TCGA-VD-A8KI-01 13 32945125 32945135 ATTTCGCAATG - BRCA2 Frame_Shift_Del p.F2841Kfs*24 0.28 TCGA-VD-A8KI-01 15 41863798 41863798 A G TYRO3 Missense_Mutation p.I556V 0.58 tolerated(0.06) possibly_damaging(0.8) TCGA-VD-A8KI-01 15 42117611 42117611 C T MAPKBP1 Missense_Mutation p.R1508W 0.86 deleterious(0) possibly_damaging(0.762) TCGA-VD-A8KI-01 16 50757249 50757249 G A NOD2 Missense_Mutation p.A946T 0.39 deleterious(0) probably_damaging(0.96) TCGA-VD-A8KI-01 16 89882378 89882378 C T FANCA Silent p.R32R 0.39 TCGA-VD-A8KI-01 1 2125233 2125233 G A C1orf86 Silent p.H105H 0.32 TCGA-VD-A8KI-01 1 34663232 34663232 T C C1orf94 Missense_Mutation p.F243L 0.53 tolerated(0.22) benign(0.088) TCGA-VD-A8KI-01 1 40771434 40771434 G A COL9A2 Missense_Mutation p.P354S 0.08 tolerated(0.14) possibly_damaging(0.876) TCGA-VD-A8KI-01 1 97278911 97278911 C G PTBP2 Missense_Mutation p.L516V 0.38 deleterious(0.04) benign(0.002) TCGA-VD-A8KI-01 20 46295178 46295178 A T SULF2 Missense_Mutation p.V544E 0.41 tolerated(0.19) benign(0.005) TCGA-VD-A8KI-01 2 102998134 102998134 T C IL18R1 Missense_Mutation p.V227A 0.42 tolerated(0.26) benign(0.336) TCGA-VD-A8KI-01 2 112620005 112620005 C T ANAPC1 Missense_Mutation p.C408Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-VD-A8KI-01 4 100463085 100463085 C T C4orf17 Missense_Mutation p.P300L 0.44 tolerated(0.06) possibly_damaging(0.733) TCGA-VD-A8KI-01 4 123275053 123275053 C G KIAA1109 Missense_Mutation p.A4729G 0.39 probably_damaging(0.992) TCGA-VD-A8KI-01 5 118469695 118469695 C T DMXL1 Silent p.D692D 0.43 TCGA-VD-A8KI-01 5 179251203 179251203 C T SQSTM1 Missense_Mutation p.L185F 0.46 tolerated(0.18) benign(0.009) TCGA-VD-A8KI-01 6 1391338 1391338 C T FOXF2 Missense_Mutation p.R386C 0.52 deleterious(0.01) benign(0.428) TCGA-VD-A8KI-01 7 16722416 16722416 A G BZW2 Silent p.K117K 0.14 TCGA-VD-A8KI-01 7 27168859 27168859 A T HOXA4 Silent p.V316V 0.30 TCGA-VD-A8KI-01 7 75625885 75625885 G A STYXL1 Silent p.N281N 0.51 TCGA-VD-A8KI-01 9 80537255 80537255 C A GNAQ Missense_Mutation p.G48V 0.36 deleterious(0) probably_damaging(1) TCGA-VD-A8KI-01 9 80537256 80537256 C A GNAQ Nonsense_Mutation p.G48* 0.34 TCGA-VD-A8KI-01 X 119513467 119513467 T C ATP1B4 Missense_Mutation p.F351S 0.89 deleterious(0) probably_damaging(1) TCGA-VD-A8KJ-01 11 49831634 49831634 G C RP11-707M1.1 RNA 0.38 TCGA-VD-A8KJ-01 11 8435082 8435082 G C STK33 Missense_Mutation p.P435R 0.37 tolerated_low_confidence(0.53) benign(0) TCGA-VD-A8KJ-01 16 20357567 20357567 C T UMOD Missense_Mutation p.D355N 0.45 tolerated(0.17) benign(0.006) TCGA-VD-A8KJ-01 18 74729169 74729169 A C MBP Silent p.T65T 0.33 TCGA-VD-A8KJ-01 19 11517462 11517462 T G RGL3 Missense_Mutation p.Q239P 0.19 tolerated(0.13) benign(0.007) TCGA-VD-A8KJ-01 19 17025480 17025480 T C CPAMD8 Missense_Mutation p.N1305S 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-VD-A8KJ-01 19 3382229 3382229 G C NFIC Missense_Mutation p.V184L 0.44 tolerated(0.2) benign(0.024) TCGA-VD-A8KJ-01 19 42814091 42814091 C T PRR19 Missense_Mutation p.R119W 0.44 deleterious(0.01) benign(0.023) TCGA-VD-A8KJ-01 2 10582209 10582209 G A ODC1 Missense_Mutation p.A281V 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-VD-A8KJ-01 2 178096252 178096252 G T NFE2L2 Nonsense_Mutation p.S360* 0.12 TCGA-VD-A8KJ-01 3 45077259 45077259 G A CLEC3B Missense_Mutation p.R151H 0.08 tolerated(0.17) benign(0.002) TCGA-VD-A8KJ-01 6 145095480 145095480 G A UTRN Missense_Mutation p.R2871K 0.52 deleterious(0.01) probably_damaging(0.995) TCGA-VD-A8KJ-01 8 110456078 110456078 G A PKHD1L1 Missense_Mutation p.E1580K 0.08 tolerated(0.1) possibly_damaging(0.831) TCGA-VD-A8KK-01 10 17686366 17686366 G T STAM Missense_Mutation p.D10Y 0.10 deleterious(0) probably_damaging(0.944) TCGA-VD-A8KK-01 12 29597085 29597085 T C OVCH1 Missense_Mutation p.T1004A 0.49 tolerated(0.27) benign(0.057) TCGA-VD-A8KK-01 12 66638726 66638726 A G IRAK3 Splice_Site p.X363_splice 0.49 TCGA-VD-A8KK-01 12 67705551 67705551 G A CAND1 Missense_Mutation p.E1147K 0.46 deleterious(0) probably_damaging(0.971) TCGA-VD-A8KK-01 16 31193944 31193944 A G FUS Missense_Mutation p.Y50C 0.52 deleterious(0) unknown(0) TCGA-VD-A8KK-01 19 37880647 37880647 A G ZNF527 Missense_Mutation p.I566V 0.47 tolerated(0.52) benign(0.002) TCGA-VD-A8KK-01 19 50412426 50412426 G C NUP62 Silent p.T213T 0.50 TCGA-VD-A8KK-01 19 9325198 9325198 T C OR7D4 Missense_Mutation p.M106V 0.41 tolerated(0.36) benign(0) TCGA-VD-A8KK-01 1 157771734 157771734 C T FCRL1 Missense_Mutation p.R286H 0.43 tolerated(0.45) benign(0.021) TCGA-VD-A8KK-01 22 24095146 24095146 C T VPREB3 Missense_Mutation p.A97T 0.49 tolerated(0.13) benign(0.05) TCGA-VD-A8KK-01 3 52441978 52441978 G - BAP1 Frame_Shift_Del p.P124Lfs*63 0.49 TCGA-VD-A8KK-01 4 104074328 104074328 A G CENPE Missense_Mutation p.I1038T 0.53 benign(0.035) TCGA-VD-A8KK-01 5 134782379 134782379 C T C5orf20 Silent p.P140P 0.40 TCGA-VD-A8KK-01 5 58289225 58289225 G C PDE4D Nonsense_Mutation p.S330* 0.42 TCGA-VD-A8KK-01 6 32809923 32809923 G A PSMB8 Silent p.G175G 0.07 TCGA-VD-A8KK-01 9 117027754 117027754 C A COL27A1 Missense_Mutation p.P1131Q 0.05 probably_damaging(0.991) TCGA-VD-A8KK-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.34 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KL-01 10 120353694 120353694 G A PRLHR Missense_Mutation p.R355C 0.40 deleterious(0) probably_damaging(0.993) TCGA-VD-A8KL-01 10 12159715 12159721 TTAACCC - DHTKD1 Frame_Shift_Del p.F788Wfs*28 0.62 TCGA-VD-A8KL-01 10 15146062 15146062 G A RPP38 Missense_Mutation p.R250Q 0.32 tolerated(1) benign(0) TCGA-VD-A8KL-01 10 52751284 52751284 T G PRKG1 Missense_Mutation p.V49G 0.58 tolerated(0.32) benign(0) TCGA-VD-A8KL-01 12 56625257 56625257 C A SLC39A5 Missense_Mutation p.L67I 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-VD-A8KL-01 14 96000012 96000012 G A GLRX5 5'Flank 0.08 TCGA-VD-A8KL-01 16 29830893 29830893 C T PAGR1 Nonsense_Mutation p.Q195* 0.29 TCGA-VD-A8KL-01 16 9943759 9943759 C A GRIN2A Missense_Mutation p.K394N 0.07 tolerated(0.81) benign(0.001) TCGA-VD-A8KL-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.35 deleterious(0) probably_damaging(0.911) TCGA-VD-A8KL-01 1 11014184 11014184 C T C1orf127 Missense_Mutation p.G331R 0.38 tolerated(1) benign(0.013) TCGA-VD-A8KL-01 1 144873916 144873916 G T PDE4DIP Missense_Mutation p.P1681T 0.29 deleterious(0.01) possibly_damaging(0.841) TCGA-VD-A8KL-01 1 23417948 23417948 G A LUZP1 Missense_Mutation p.P936L 0.04 deleterious_low_confidence(0.05) benign(0.004) TCGA-VD-A8KL-01 20 32358081 32358081 G A ZNF341 Silent p.K528K 0.85 TCGA-VD-A8KL-01 3 52443612 52443613 - C BAP1 Frame_Shift_Ins p.V27Gfs*42 0.50 TCGA-VD-A8KL-01 4 170037527 170037527 G A SH3RF1 Missense_Mutation p.P678S 0.07 tolerated(0.46) benign(0.009) TCGA-VD-A8KL-01 5 140554081 140554081 C A PCDHB7 Missense_Mutation p.N555K 0.61 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-VD-A8KL-01 7 107871480 107871480 T C NRCAM Missense_Mutation p.D182G 0.30 deleterious(0.01) possibly_damaging(0.734) TCGA-VD-A8KL-01 7 45956889 45956889 G A IGFBP3 Missense_Mutation p.R191C 0.22 deleterious(0.03) probably_damaging(1) TCGA-VD-A8KL-01 7 86542377 86542377 G A KIAA1324L Silent p.H625H 0.06 TCGA-VD-A8KL-01 9 118949960 118949960 G A PAPPA Missense_Mutation p.G315S 0.55 tolerated(0.54) benign(0.006) TCGA-VD-A8KL-01 9 131396572 131396597 GAGGGAGAGCTGCAGCGAAGTCAAGG - WDR34 Frame_Shift_Del p.P427Qfs*24 0.38 TCGA-VD-A8KL-01 9 133491801 133491801 A T FUBP3 Missense_Mutation p.H155L 0.29 deleterious(0.02) benign(0.423) TCGA-VD-A8KL-01 X 63444180 63444180 C T ASB12 3'UTR 0.41 TCGA-VD-A8KL-01 X 9864553 9864553 A G SHROOM2 Missense_Mutation p.R869G 0.36 deleterious(0) possibly_damaging(0.788) TCGA-VD-A8KM-01 12 26943118 26943118 G A ITPR2 Silent p.D45D 0.23 TCGA-VD-A8KM-01 14 100996252 100996252 C T WDR25 Silent p.R503R 0.20 TCGA-VD-A8KM-01 18 32459684 32459684 G A DTNA Splice_Site p.X634_splice 0.18 TCGA-VD-A8KM-01 19 13322958 13322958 C G CACNA1A Missense_Mutation p.G2088R 0.05 benign(0.074) TCGA-VD-A8KM-01 1 210522378 210522378 A G HHAT Intron 0.25 TCGA-VD-A8KM-01 1 39796950 39796950 G C MACF1 Intron 0.15 TCGA-VD-A8KM-01 20 31890861 31890861 C T BPIFB1 Missense_Mutation p.P374L 0.05 deleterious(0) probably_damaging(1) TCGA-VD-A8KM-01 20 42907913 42907913 C T GDAP1L1 Silent p.Y359Y 0.17 TCGA-VD-A8KM-01 21 15352075 15352075 G A ANKRD20A11P RNA 0.16 TCGA-VD-A8KM-01 2 135738473 135738473 C T MAP3K19 Missense_Mutation p.G1280R 0.12 deleterious(0) probably_damaging(1) TCGA-VD-A8KM-01 2 179583473 179583473 C T TTN Missense_Mutation p.V8152I 0.21 TCGA-VD-A8KM-01 2 71755450 71755450 C T DYSF Silent p.N433N 0.29 TCGA-VD-A8KM-01 2 73316089 73316089 G A RAB11FIP5 Silent p.S262S 0.13 TCGA-VD-A8KM-01 3 44670659 44670659 A G ZNF197 Missense_Mutation p.N5D 0.26 tolerated_low_confidence(0.06) benign(0.037) TCGA-VD-A8KM-01 6 100369077 100369077 C T MCHR2 Silent p.L254L 0.17 TCGA-VD-A8KM-01 7 91659258 91659258 A G AKAP9 Missense_Mutation p.M1400V 0.19 benign(0) TCGA-VD-A8KM-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.22 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KM-01 X 49845342 49845342 C T CLCN5 Missense_Mutation p.A232V 0.05 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KM-01 X 83374915 83374915 C G RPS6KA6 Missense_Mutation p.W256S 0.44 deleterious(0) probably_damaging(1) TCGA-VD-A8KN-01 12 113285537 113285537 G A RPH3A Silent p.Q40Q 0.06 TCGA-VD-A8KN-01 14 22134222 22134222 C T OR4E2 Missense_Mutation p.T309M 0.28 tolerated(0.14) benign(0) TCGA-VD-A8KN-01 16 66887373 66887373 G C CA7 Missense_Mutation p.R256P 0.07 deleterious(0) probably_damaging(1) TCGA-VD-A8KN-01 16 84520354 84520354 G A TLDC1 Nonsense_Mutation p.Q281* 0.34 TCGA-VD-A8KN-01 17 18047195 18047195 G T MYO15A Missense_Mutation p.A2020S 0.79 unknown(0) TCGA-VD-A8KN-01 17 4798399 4798399 G A MINK1 Missense_Mutation p.D983N 0.39 deleterious(0.02) benign(0.049) TCGA-VD-A8KN-01 1 152883896 152883896 G C IVL Missense_Mutation p.E541D 0.58 deleterious_low_confidence(0.03) benign(0.038) TCGA-VD-A8KN-01 1 212798742 212798742 C T FAM71A Missense_Mutation p.R175W 0.41 deleterious(0) benign(0.098) TCGA-VD-A8KN-01 1 248201776 248201776 C G OR2L2 Missense_Mutation p.D69E 0.30 deleterious(0.01) benign(0.417) TCGA-VD-A8KN-01 1 54426038 54426038 G A LRRC42 Silent p.Q205Q 0.42 TCGA-VD-A8KN-01 2 220432798 220432798 C T OBSL1 Missense_Mutation p.V421M 0.40 deleterious(0) probably_damaging(0.994) TCGA-VD-A8KN-01 9 130213658 130213658 G T RPL12 5'UTR 0.27 TCGA-VD-A8KN-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.36 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KN-01 9 95599650 95599650 G C ANKRD19P RNA 0.50 TCGA-VD-A8KO-01 11 47358992 47358992 G T MYBPC3 Missense_Mutation p.A851D 0.31 deleterious(0.01) possibly_damaging(0.827) TCGA-VD-A8KO-01 11 72408531 72408531 C T ARAP1 Silent p.R930R 0.39 TCGA-VD-A8KO-01 19 57803250 57803250 G A ZNF460 Silent p.P447P 0.05 TCGA-VD-A8KO-01 1 183221755 183221755 T C NMNAT2 3'UTR 0.40 TCGA-VD-A8KO-01 2 38975258 38975259 AG - SRSF7 Frame_Shift_Del p.L168Sfs*2 0.12 TCGA-VD-A8KO-01 2 74275098 74275099 CC - TET3 Frame_Shift_Del p.P551Qfs*19 0.51 TCGA-VD-A8KO-01 3 13672941 13672941 C T FBLN2 Silent p.N1066N 0.33 TCGA-VD-A8KO-01 6 29054153 29054153 G T OR2B3 Missense_Mutation p.S291R 0.20 deleterious(0) benign(0.25) TCGA-VD-A8KO-01 7 5568323 5568323 C T ACTB Missense_Mutation p.A131T 0.49 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-VD-A8KO-01 8 71520412 71520412 G C TRAM1 Missense_Mutation p.T8S 0.53 tolerated(0.86) benign(0.001) TCGA-VD-A8KO-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.43 deleterious(0) probably_damaging(0.999) TCGA-VD-A8KO-01 X 20156735 20156737 CTT - EIF1AX In_Frame_Del p.K7_G8delinsR 0.97 TCGA-VD-A8KO-01 X 73062599 73062599 G A XIST RNA 1.00 TCGA-VD-AA8M-01 11 63971545 63971545 A G STIP1 Missense_Mutation p.I527V 0.38 tolerated(0.5) benign(0.145) TCGA-VD-AA8M-01 12 52710711 52710711 T C KRT83 Missense_Mutation p.I283V 0.33 tolerated(0.6) benign(0.122) TCGA-VD-AA8M-01 12 53880791 53880791 G A MAP3K12 Missense_Mutation p.R129C 0.05 deleterious(0) probably_damaging(0.954) TCGA-VD-AA8M-01 15 25321125 25321125 T G SNORD116-11 RNA 0.47 TCGA-VD-AA8M-01 16 1574691 1574691 C T IFT140 Silent p.A1001A 0.07 TCGA-VD-AA8M-01 17 3514063 3514063 G A SHPK Silent p.L410L 0.54 TCGA-VD-AA8M-01 17 73623546 73623546 C T RECQL5 Missense_Mutation p.E978K 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-VD-AA8M-01 18 6999964 6999964 T C LAMA1 Missense_Mutation p.H1472R 0.18 tolerated(0.25) benign(0.008) TCGA-VD-AA8M-01 19 45809942 45809942 G A CKM 3'UTR 0.29 TCGA-VD-AA8M-01 19 55602889 55602889 T C PPP1R12C Missense_Mutation p.K767R 0.54 deleterious(0.01) probably_damaging(0.98) TCGA-VD-AA8M-01 19 8999436 8999436 T C MUC16 Missense_Mutation p.E13580G 0.20 possibly_damaging(0.541) TCGA-VD-AA8M-01 1 153658320 153658320 C T NPR1 Silent p.G548G 0.36 TCGA-VD-AA8M-01 1 33058775 33058775 C G ZBTB8A Missense_Mutation p.D81E 0.08 probably_damaging(1) TCGA-VD-AA8M-01 21 46950865 46950865 C T SLC19A1 Missense_Mutation p.A324T 0.10 deleterious(0.01) probably_damaging(0.946) TCGA-VD-AA8M-01 22 35661472 35661472 C A HMGXB4 Missense_Mutation p.P364H 0.62 deleterious_low_confidence(0.01) benign(0.417) TCGA-VD-AA8M-01 2 190428516 190428516 T C SLC40A1 Missense_Mutation p.D399G 0.46 deleterious(0) benign(0.34) TCGA-VD-AA8M-01 3 122821618 122821618 A G PDIA5 Missense_Mutation p.E121G 0.44 deleterious(0.04) possibly_damaging(0.493) TCGA-VD-AA8M-01 3 44952846 44952846 A C TGM4 Missense_Mutation p.K621Q 0.41 deleterious(0.05) possibly_damaging(0.447) TCGA-VD-AA8M-01 4 25819797 25819797 G C SEL1L3 Missense_Mutation p.S509R 0.45 tolerated(0.06) benign(0.13) TCGA-VD-AA8M-01 5 111066659 111066659 C T NREP Missense_Mutation p.E100K 0.53 tolerated(0.13) benign(0.285) TCGA-VD-AA8M-01 5 76788029 76788029 A C WDR41 Missense_Mutation p.I6S 0.47 deleterious(0) benign(0.194) TCGA-VD-AA8M-01 6 25500413 25500413 G C LRRC16A Missense_Mutation p.A449P 0.45 deleterious(0) possibly_damaging(0.824) TCGA-VD-AA8M-01 8 41790274 41790274 T C KAT6A Missense_Mutation p.N1822D 0.44 unknown(0) TCGA-VD-AA8M-01 9 40773380 40773380 C T ZNF658 Missense_Mutation p.C632Y 0.29 deleterious(0) probably_damaging(1) TCGA-VD-AA8M-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.47 deleterious(0) probably_damaging(0.999) TCGA-VD-AA8M-01 9 95147973 95147973 G T OGN Missense_Mutation p.P276T 0.07 deleterious(0) probably_damaging(1) TCGA-VD-AA8N-01 14 23862938 23862955 GTCCTTCTTGAGCTCTGA - MYH6 In_Frame_Del p.S950_D955del 0.31 TCGA-VD-AA8N-01 16 57059885 57059885 G A NLRC5 Missense_Mutation p.A344T 0.08 tolerated(0.27) benign(0.05) TCGA-VD-AA8N-01 17 75208190 75208190 C T SEC14L1 Silent p.N590N 0.34 TCGA-VD-AA8N-01 18 43534962 43534962 T C EPG5 Missense_Mutation p.K136E 0.52 tolerated_low_confidence(0.41) benign(0.051) TCGA-VD-AA8N-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.36 deleterious(0) probably_damaging(0.911) TCGA-VD-AA8N-01 1 158605758 158605758 G A SPTA1 Missense_Mutation p.R1793W 0.38 deleterious(0) probably_damaging(1) TCGA-VD-AA8N-01 1 74507165 74507165 G A LRRIQ3 Nonsense_Mutation p.R484* 0.38 TCGA-VD-AA8N-01 21 37732303 37732303 G A MORC3 Missense_Mutation p.R420Q 0.44 deleterious(0) probably_damaging(0.993) TCGA-VD-AA8N-01 2 219561571 219561571 G A STK36 Intron 0.43 TCGA-VD-AA8N-01 8 68992730 68992730 G T PREX2 Silent p.S565S 0.42 TCGA-VD-AA8O-01 10 87362425 87362425 G A GRID1 Missense_Mutation p.R879C 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VD-AA8O-01 11 64677225 64677225 G A ATG2A Missense_Mutation p.R679W 0.06 deleterious(0.02) possibly_damaging(0.586) TCGA-VD-AA8O-01 12 123461285 123461285 G A OGFOD2 Missense_Mutation p.A32T 0.08 tolerated(0.22) benign(0.098) TCGA-VD-AA8O-01 12 50453720 50453720 G A ASIC1 Missense_Mutation p.A181T 0.85 deleterious(0.03) benign(0.221) TCGA-VD-AA8O-01 13 49281339 49281339 T A CYSLTR2 Missense_Mutation p.L129Q 0.23 deleterious(0) probably_damaging(1) TCGA-VD-AA8O-01 14 63417240 63417240 C T KCNH5 Missense_Mutation p.R327H 0.19 deleterious(0) probably_damaging(0.992) TCGA-VD-AA8O-01 17 960239 960239 G A ABR Silent p.D495D 0.41 TCGA-VD-AA8O-01 19 15230041 15230041 G T ILVBL Missense_Mutation p.H329Q 0.05 tolerated(0.06) possibly_damaging(0.653) TCGA-VD-AA8O-01 19 45855905 45855905 C T ERCC2 Silent p.A635A 0.21 TCGA-VD-AA8O-01 1 197111536 197111536 T G ASPM Missense_Mutation p.K616Q 0.52 tolerated(0.11) benign(0.192) TCGA-VD-AA8O-01 1 197111537 197111537 C T ASPM Silent p.K615K 0.51 TCGA-VD-AA8O-01 2 182389930 182389930 G T ITGA4 Nonsense_Mutation p.E751* 0.13 TCGA-VD-AA8O-01 2 219529520 219529520 C G RNF25 Missense_Mutation p.R248P 0.28 deleterious(0) possibly_damaging(0.763) TCGA-VD-AA8O-01 3 183819281 183819281 G T HTR3E Intron 0.39 TCGA-VD-AA8O-01 4 144336795 144336795 G A GAB1 Missense_Mutation p.E80K 0.38 deleterious(0) probably_damaging(0.999) TCGA-VD-AA8O-01 6 4069806 4069806 G C FAM217A Missense_Mutation p.S217R 0.33 deleterious(0.01) possibly_damaging(0.897) TCGA-VD-AA8O-01 7 129125472 129125472 C T STRIP2 Silent p.A769A 0.19 TCGA-VD-AA8O-01 7 131910977 131910977 G A PLXNA4 Missense_Mutation p.T642I 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-VD-AA8O-01 7 98985821 98985821 A G ARPC1B Missense_Mutation p.K110R 0.37 deleterious(0) possibly_damaging(0.85) TCGA-VD-AA8P-01 16 5121851 5121851 A G ALG1 Translation_Start_Site p.M1? 0.44 tolerated_low_confidence(0.09) unknown(0) TCGA-VD-AA8P-01 16 83999242 83999242 A G OSGIN1 Missense_Mutation p.Y355C 0.53 deleterious(0.01) probably_damaging(0.976) TCGA-VD-AA8P-01 17 6594096 6594096 A T SLC13A5 Splice_Site p.X479_splice 0.40 TCGA-VD-AA8P-01 17 76563118 76563118 G A DNAH17 Missense_Mutation p.A472V 0.15 benign(0.005) TCGA-VD-AA8P-01 19 20236306 20236306 T A CTC-260E6.2 3'Flank 0.50 TCGA-VD-AA8P-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.42 deleterious(0) probably_damaging(0.911) TCGA-VD-AA8P-01 19 58991009 58991009 G C ZNF446 Splice_Site p.X210_splice 0.54 TCGA-VD-AA8P-01 20 60470052 60470065 CATCACGGTGACAG - CDH4 Frame_Shift_Del p.I380Cfs*3 0.30 TCGA-VD-AA8P-01 22 29835206 29835206 A G RFPL1 Intron 0.39 TCGA-VD-AA8P-01 2 219268127 219268127 A G CTDSP1 Missense_Mutation p.H215R 0.37 deleterious(0.04) benign(0.267) TCGA-VD-AA8P-01 3 49842221 49842221 C A FAM212A Missense_Mutation p.P222H 0.93 deleterious(0.01) probably_damaging(0.999) TCGA-VD-AA8P-01 3 52263159 52263159 G C TWF2 Missense_Mutation p.P314R 0.94 deleterious(0) probably_damaging(1) TCGA-VD-AA8P-01 5 137288386 137288386 C A FAM13B Missense_Mutation p.D599Y 0.92 deleterious(0) possibly_damaging(0.836) TCGA-VD-AA8P-01 8 110590198 110590198 G T SYBU Silent p.P261P 0.61 TCGA-VD-AA8P-01 8 144124604 144124604 G A C8orf31 Silent p.G37G 0.59 TCGA-VD-AA8P-01 9 74324303 74324303 T C TMEM2 Missense_Mutation p.I953V 0.45 tolerated(1) benign(0) TCGA-VD-AA8P-01 X 100349757 100349757 C T TMEM35 Nonsense_Mutation p.Q106* 0.48 TCGA-VD-AA8P-01 X 129318341 129318341 T C RAB33A Missense_Mutation p.V114A 0.40 deleterious(0) possibly_damaging(0.714) TCGA-VD-AA8P-01 X 27766141 27766141 G A DCAF8L2 Missense_Mutation p.A377T 0.07 tolerated(0.12) benign(0.358) TCGA-VD-AA8Q-01 10 91099758 91099758 C T IFIT3 Missense_Mutation p.A449V 0.07 tolerated(0.39) benign(0.008) TCGA-VD-AA8Q-01 11 679783 679783 G A DEAF1 Missense_Mutation p.S344L 0.33 deleterious(0) possibly_damaging(0.719) TCGA-VD-AA8Q-01 12 104341458 104341458 T C HSP90B1 3'UTR 0.11 TCGA-VD-AA8Q-01 12 53606945 53606945 G C RARG Silent p.R367R 0.47 TCGA-VD-AA8Q-01 14 23522740 23522740 G A CDH24 Silent p.S397S 0.58 TCGA-VD-AA8Q-01 16 2818118 2818118 G A SRRM2 Missense_Mutation p.R2530Q 0.50 probably_damaging(0.992) TCGA-VD-AA8Q-01 17 39389143 39389143 C G KRTAP9-3 Missense_Mutation p.C130W 0.64 deleterious(0) probably_damaging(0.98) TCGA-VD-AA8Q-01 17 46670514 46670514 G T HOXB5 Missense_Mutation p.F177L 0.20 deleterious(0.02) benign(0.441) TCGA-VD-AA8Q-01 17 46691904 46691904 G C HOXB8 Missense_Mutation p.Q55E 0.38 tolerated(0.05) benign(0.276) TCGA-VD-AA8Q-01 17 76421433 76421433 T G DNAH17 Missense_Mutation p.M4402L 0.40 benign(0.02) TCGA-VD-AA8Q-01 19 44981067 44981067 G C ZNF180 Missense_Mutation p.T544S 0.43 tolerated(0.07) probably_damaging(0.995) TCGA-VD-AA8Q-01 1 150769184 150769184 A T CTSK 3'UTR 0.27 TCGA-VD-AA8Q-01 1 2939192 2939192 G A ACTRT2 Silent p.R314R 0.45 TCGA-VD-AA8Q-01 21 43543127 43543127 G A UMODL1 Missense_Mutation p.R1133H 0.35 tolerated(0.12) benign(0.072) TCGA-VD-AA8Q-01 3 115395065 115395065 A C GAP43 Missense_Mutation p.E115A 0.43 tolerated(0.08) benign(0.297) TCGA-VD-AA8Q-01 3 141231112 141231112 A C RASA2 Missense_Mutation p.K81Q 0.47 deleterious(0.03) probably_damaging(0.977) TCGA-VD-AA8Q-01 6 610103 610103 A G EXOC2 Missense_Mutation p.L246P 0.41 deleterious(0) probably_damaging(0.979) TCGA-VD-AA8Q-01 6 97599676 97599678 TTC - MMS22L In_Frame_Del p.E1151del 0.35 TCGA-VD-AA8Q-01 7 150776028 150776028 A C FASTK Missense_Mutation p.L196V 0.42 tolerated(0.28) benign(0.12) TCGA-VD-AA8Q-01 9 135251526 135251526 G C TTF1 Missense_Mutation p.L832V 0.38 deleterious(0.03) probably_damaging(0.957) TCGA-VD-AA8Q-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.30 deleterious(0) probably_damaging(0.999) TCGA-VD-AA8Q-01 X 47836907 47836907 A G ZNF182 Silent p.H193H 0.55 TCGA-VD-AA8R-01 10 124897066 124897066 C T HMX3 Missense_Mutation p.A298V 0.31 deleterious(0.02) possibly_damaging(0.837) TCGA-VD-AA8R-01 10 135020364 135020364 C T KNDC1 Silent p.S1162S 0.07 TCGA-VD-AA8R-01 10 60549448 60549448 A G BICC1 Missense_Mutation p.T268A 0.46 tolerated(0.06) benign(0.001) TCGA-VD-AA8R-01 11 1162271 1162271 G A MUC5AC Missense_Mutation p.A594T 0.48 tolerated(0.12) benign(0.203) TCGA-VD-AA8R-01 12 6953033 6953033 A G GNB3 Missense_Mutation p.N197S 0.41 tolerated(0.1) benign(0.023) TCGA-VD-AA8R-01 17 10426880 10426880 C T MYH2 Missense_Mutation p.R1802H 0.45 deleterious(0.01) benign(0.079) TCGA-VD-AA8R-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.49 deleterious(0) probably_damaging(0.911) TCGA-VD-AA8R-01 19 38983214 38983214 G A RYR1 Missense_Mutation p.R2071Q 0.38 benign(0.001) TCGA-VD-AA8R-01 19 40581890 40581890 A G ZNF780A Silent p.P154P 0.05 TCGA-VD-AA8R-01 1 43912793 43912793 C T SZT2 Silent p.A3023A 0.48 TCGA-VD-AA8R-01 22 46704545 46704545 A C GTSE1 Missense_Mutation p.K156T 0.44 deleterious(0) probably_damaging(0.992) TCGA-VD-AA8R-01 2 121748132 121748132 C T GLI2 Nonsense_Mutation p.R1548* 0.41 TCGA-VD-AA8R-01 2 44145165 44145165 T C LRPPRC Silent p.K1049K 0.45 TCGA-VD-AA8R-01 5 34823886 34823886 G A RAI14 Missense_Mutation p.E650K 0.43 deleterious(0) probably_damaging(0.999) TCGA-VD-AA8R-01 X 20156740 20156740 C T EIF1AX Missense_Mutation p.G6D 0.90 deleterious(0.01) unknown(0) TCGA-VD-AA8S-01 14 24029488 24029488 G T AP1G2 Missense_Mutation p.F711L 0.15 tolerated(0.13) benign(0.111) TCGA-VD-AA8S-01 14 90651142 90651142 G A KCNK13 Missense_Mutation p.R341Q 0.31 deleterious(0) probably_damaging(0.917) TCGA-VD-AA8S-01 14 94935951 94935951 G A SERPINA9 Missense_Mutation p.S94F 0.46 deleterious(0) probably_damaging(0.925) TCGA-VD-AA8S-01 1 39853083 39853083 G A MACF1 Missense_Mutation p.G2795R 0.44 probably_damaging(0.997) TCGA-VD-AA8S-01 1 53153670 53153670 T - COA7 Frame_Shift_Del p.R140Gfs*37 0.28 TCGA-VD-AA8S-01 3 4725409 4725409 G A ITPR1 Nonsense_Mutation p.W1127* 0.56 TCGA-VD-AA8S-01 7 99499717 99499717 T A TRIM4 Intron 0.14 TCGA-VD-AA8S-01 9 111617426 111617426 G A ACTL7B Missense_Mutation p.A262V 0.05 tolerated(1) benign(0.251) TCGA-VD-AA8S-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.62 deleterious(0) probably_damaging(0.999) TCGA-VD-AA8T-01 11 118071314 118071314 C T AMICA1 Silent p.P262P 0.46 TCGA-VD-AA8T-01 12 113664727 113664727 G T TPCN1 Missense_Mutation p.A96S 0.30 tolerated(0.2) benign(0.01) TCGA-VD-AA8T-01 14 70925884 70925884 T C ADAM21 Silent p.S556S 0.47 TCGA-VD-AA8T-01 16 15814858 15814860 CTC - MYH11 In_Frame_Del p.E1550del 0.29 TCGA-VD-AA8T-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.39 deleterious(0) probably_damaging(0.911) TCGA-VD-AA8T-01 19 38979906 38979906 C T RYR1 Silent p.D1879D 0.46 TCGA-VD-AA8T-01 19 50028774 50028774 C T FCGRT Missense_Mutation p.T311M 0.32 tolerated(0.31) benign(0.009) TCGA-VD-AA8T-01 19 52659256 52659256 G C ZNF836 Silent p.G560G 0.32 TCGA-VD-AA8T-01 19 54705022 54705022 G T RPS9 Intron 0.42 TCGA-VD-AA8T-01 1 207073691 207073691 C T IL24 Nonsense_Mutation p.Q99* 0.47 TCGA-VD-AA8T-01 20 17639295 17639295 T C RRBP1 Missense_Mutation p.K190E 0.39 deleterious(0.03) possibly_damaging(0.486) TCGA-VD-AA8T-01 20 62193474 62193474 C T HELZ2 Silent p.A2160A 0.50 TCGA-VD-AA8T-01 21 34117154 34117154 T - PAXBP1 Frame_Shift_Del p.K713Nfs*2 0.30 TCGA-VD-AA8T-01 4 6698805 6698805 T C S100P 3'UTR 0.51 TCGA-VD-AA8T-01 5 178410055 178410055 C T GRM6 Silent p.T764T 0.50 TCGA-VD-AA8T-01 6 83868338 83868338 C T DOPEY1 Missense_Mutation p.S2265L 0.48 tolerated(0.44) benign(0.002) TCGA-VD-AA8T-01 8 26212088 26212088 G C PPP2R2A Missense_Mutation p.K105N 0.25 deleterious(0) probably_damaging(0.993) TCGA-VD-AA8T-01 9 103064388 103064388 T C TEX10 3'UTR 0.41 TCGA-VD-AA8T-01 9 34649090 34649090 C T GALT Intron 0.55 TCGA-WC-A87T-01 10 96798695 96798695 C T CYP2C8 Missense_Mutation p.G417D 0.05 deleterious(0) possibly_damaging(0.886) TCGA-WC-A87T-01 11 62389419 62389419 T C B3GAT3 Translation_Start_Site p.M1? 0.10 tolerated_low_confidence(0.13) probably_damaging(0.952) TCGA-WC-A87T-01 12 266746 266746 G A IQSEC3 Missense_Mutation p.D777N 0.36 deleterious(0) probably_damaging(0.989) TCGA-WC-A87T-01 16 30544430 30544430 G A ZNF747 Missense_Mutation p.R176W 0.05 deleterious_low_confidence(0.02) benign(0.135) TCGA-WC-A87T-01 19 19349148 19349148 G T NCAN Nonsense_Mutation p.E1113* 0.05 TCGA-WC-A87T-01 19 43382400 43382400 G A PSG1 Missense_Mutation p.T32I 0.58 deleterious(0.01) benign(0.044) TCGA-WC-A87T-01 1 200377456 200377456 T C ZNF281 Missense_Mutation p.K460E 0.43 tolerated(1) possibly_damaging(0.628) TCGA-WC-A87T-01 20 60868864 60868864 C G OSBPL2 Missense_Mutation p.P455R 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-WC-A87T-01 3 69168367 69168367 G A LMOD3 Missense_Mutation p.P380L 0.10 deleterious(0) probably_damaging(0.989) TCGA-WC-A87T-01 5 1210680 1210680 C A SLC6A19 Silent p.L155L 0.13 TCGA-WC-A87T-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.49 deleterious(0) probably_damaging(0.999) TCGA-WC-A87T-01 X 1508133 1508133 C A SLC25A6 Splice_Site p.X200_splice 0.06 TCGA-WC-A87T-01 X 153596438 153596438 C T FLNA Missense_Mutation p.G132R 0.94 deleterious(0) probably_damaging(0.999) TCGA-WC-A87U-01 12 77419664 77419664 C A E2F7 Missense_Mutation p.V747F 0.21 deleterious(0.05) benign(0.041) TCGA-WC-A87U-01 14 106967230 106967230 C T IGHV1-46 Missense_Mutation p.R57Q 0.38 tolerated(0.15) benign(0.103) TCGA-WC-A87U-01 17 21092103 21092103 C T DHRS7B Silent p.T233T 0.44 TCGA-WC-A87U-01 17 4722777 4722777 G A PLD2 Missense_Mutation p.A788T 0.64 deleterious(0) probably_damaging(0.968) TCGA-WC-A87U-01 17 62530713 62530713 A C CEP95 Missense_Mutation p.K643T 0.35 deleterious(0) possibly_damaging(0.736) TCGA-WC-A87U-01 18 31323330 31323330 C T ASXL3 Missense_Mutation p.A1173V 0.45 benign(0.005) TCGA-WC-A87U-01 1 19492233 19492233 G A UBR4 Silent p.I1376I 0.37 TCGA-WC-A87U-01 2 218753 218753 T C SH3YL1 3'UTR 0.55 TCGA-WC-A87U-01 3 151012731 151012731 A C GPR87 Missense_Mutation p.D101E 0.39 deleterious(0.05) possibly_damaging(0.873) TCGA-WC-A87U-01 3 189582119 189582119 C T TP63 Silent p.R226R 0.44 TCGA-WC-A87U-01 3 47041744 47041744 G A NBEAL2 Silent p.Q1385Q 0.53 TCGA-WC-A87U-01 5 1060463 1060463 C A SLC12A7 Missense_Mutation p.R948L 0.39 deleterious(0.04) possibly_damaging(0.828) TCGA-WC-A87U-01 7 103050935 103050935 C T SLC26A5 Missense_Mutation p.R211H 0.48 deleterious(0.01) probably_damaging(0.917) TCGA-WC-A87U-01 7 113519490 113519490 C T PPP1R3A Missense_Mutation p.A553T 0.36 tolerated(0.27) benign(0.002) TCGA-WC-A87U-01 7 33028245 33028245 G A FKBP9 Silent p.G340G 0.43 TCGA-WC-A87U-01 9 130169508 130169508 G A SLC2A8 Missense_Mutation p.A472T 0.46 tolerated(0.09) possibly_damaging(0.574) TCGA-WC-A87U-01 9 135163946 135163946 G A SETX Missense_Mutation p.H2067Y 0.58 tolerated(0.05) probably_damaging(1) TCGA-WC-A87U-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.46 deleterious(0) probably_damaging(0.999) TCGA-WC-A87U-01 X 20156713 20156713 C T EIF1AX Missense_Mutation p.G15D 1.00 deleterious(0) unknown(0) TCGA-WC-A87W-01 10 100143379 100143379 G A PYROXD2 3'UTR 0.27 TCGA-WC-A87W-01 15 50866914 50866914 T A TRPM7 Missense_Mutation p.E1674D 0.33 deleterious(0) probably_damaging(0.997) TCGA-WC-A87W-01 17 78332109 78332109 C T RNF213 Silent p.V3628V 0.32 TCGA-WC-A87W-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.36 deleterious(0) probably_damaging(0.911) TCGA-WC-A87W-01 19 49377681 49377682 - G PPP1R15A Frame_Shift_Ins p.E398Gfs*6 0.27 TCGA-WC-A87W-01 3 118824025 118824025 T C IGSF11 Silent p.E5E 0.45 TCGA-WC-A87W-01 3 38938527 38938527 G T SCN11A Missense_Mutation p.P738T 0.38 tolerated(0.41) benign(0.011) TCGA-WC-A87W-01 3 47033435 47033435 A T NBEAL2 Missense_Mutation p.K344M 0.50 deleterious(0) possibly_damaging(0.886) TCGA-WC-A87W-01 3 61548042 61548054 CCCCGGTGAGTGC - PTPRG Splice_Site p.X28_splice 0.13 TCGA-WC-A87W-01 7 138552831 138552831 C T KIAA1549 Missense_Mutation p.V1607I 0.33 tolerated(0.65) probably_damaging(0.998) TCGA-WC-A87W-01 9 139620492 139620492 A G FAM69B 3'Flank 0.07 TCGA-WC-A87W-01 X 51640905 51640905 A G MAGED1 Silent p.Q583Q 0.38 TCGA-WC-A87Y-01 11 32858271 32858271 G A PRRG4 Silent p.L57L 0.30 TCGA-WC-A87Y-01 13 42461419 42461419 G A VWA8 Missense_Mutation p.P244S 0.05 deleterious(0) probably_damaging(1) TCGA-WC-A87Y-01 15 60648185 60648185 T A ANXA2 Missense_Mutation p.D172V 0.49 tolerated(0.05) benign(0.01) TCGA-WC-A87Y-01 15 89694924 89694924 A G ABHD2 Missense_Mutation p.I71V 0.34 deleterious(0.01) benign(0.017) TCGA-WC-A87Y-01 16 30666177 30666177 G A PRR14 Missense_Mutation p.A296T 0.42 deleterious(0.02) possibly_damaging(0.53) TCGA-WC-A87Y-01 16 321227 321227 G A RGS11 Silent p.D279D 0.40 TCGA-WC-A87Y-01 16 71571118 71571118 C T CHST4 Missense_Mutation p.R180C 0.30 deleterious(0) probably_damaging(1) TCGA-WC-A87Y-01 17 10355524 10355524 C T MYH4 Missense_Mutation p.G1158S 0.35 deleterious(0.04) probably_damaging(1) TCGA-WC-A87Y-01 17 38645057 38645057 T C TNS4 Missense_Mutation p.I202V 0.30 tolerated(0.68) benign(0.022) TCGA-WC-A87Y-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.26 deleterious(0) probably_damaging(0.911) TCGA-WC-A87Y-01 1 247006072 247006072 C T AHCTF1 Missense_Mutation p.D2187N 0.34 tolerated(0.09) benign(0.081) TCGA-WC-A87Y-01 2 1263147 1263147 C T SNTG2 Silent p.S337S 0.18 TCGA-WC-A880-01 11 4626372 4626372 G C TRIM68 Missense_Mutation p.S121R 0.32 tolerated(0.94) benign(0.014) TCGA-WC-A880-01 15 75977618 75977618 G A CSPG4 Missense_Mutation p.A1405V 0.05 tolerated(0.31) benign(0.002) TCGA-WC-A880-01 19 47542770 47542770 A T NPAS1 Missense_Mutation p.M304L 0.55 deleterious(0.02) benign(0.017) TCGA-WC-A880-01 1 145209152 145209152 G C RP11-458D21.5 5'UTR 0.25 TCGA-WC-A880-01 1 71318494 71318494 T G PTGER3 3'UTR 0.38 TCGA-WC-A880-01 20 2597933 2597933 C T TMC2 Missense_Mutation p.P719L 0.32 deleterious(0) probably_damaging(1) TCGA-WC-A880-01 2 113332606 113332606 C T POLR1B Missense_Mutation p.P903L 0.37 deleterious(0) probably_damaging(0.999) TCGA-WC-A880-01 2 228883588 228883588 T A SPHKAP Missense_Mutation p.N661I 0.50 deleterious(0.04) possibly_damaging(0.474) TCGA-WC-A880-01 3 146309609 146309609 G C PLSCR5 Silent p.P171P 0.35 TCGA-WC-A880-01 3 195484122 195484122 C T MUC4 Missense_Mutation p.G5022S 0.45 benign(0.213) TCGA-WC-A880-01 7 134620492 134620492 C T CALD1 Silent p.D454D 0.42 TCGA-WC-A880-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.52 deleterious(0) probably_damaging(0.999) TCGA-WC-A880-01 X 20156740 20156740 C T EIF1AX Missense_Mutation p.G6D 0.93 deleterious(0.01) unknown(0) TCGA-WC-A881-01 11 119996547 119996547 G T TRIM29 Silent p.T395T 0.56 TCGA-WC-A881-01 13 114115432 114115432 C T DCUN1D2 Silent p.A180A 0.44 TCGA-WC-A881-01 16 4935851 4935851 C G PPL Missense_Mutation p.K935N 0.51 deleterious(0) possibly_damaging(0.616) TCGA-WC-A881-01 17 72997556 72997556 A G CDR2L Missense_Mutation p.S105G 0.33 deleterious(0.01) possibly_damaging(0.672) TCGA-WC-A881-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.48 deleterious(0) probably_damaging(0.911) TCGA-WC-A881-01 19 7833752 7833752 C T CLEC4M Missense_Mutation p.P360S 0.49 deleterious(0) probably_damaging(0.997) TCGA-WC-A881-01 1 109803788 109803788 G A CELSR2 Silent p.E1361E 0.47 TCGA-WC-A881-01 2 198267372 198267372 T C SF3B1 Missense_Mutation p.H662R 0.50 deleterious(0) probably_damaging(0.998) TCGA-WC-A881-01 2 24046157 24046160 GCAT - ATAD2B Frame_Shift_Del p.H700Lfs*12 0.57 TCGA-WC-A881-01 3 133473498 133473498 G A TF Missense_Mutation p.R162H 0.49 tolerated(0.19) benign(0.012) TCGA-WC-A881-01 4 20255451 20255451 G T SLIT2 Missense_Mutation p.G5C 0.44 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-WC-A881-01 4 38945211 38945211 G C FAM114A1 3'UTR 0.54 TCGA-WC-A881-01 6 1612302 1612302 G A FOXC1 Missense_Mutation p.R541H 0.05 deleterious(0) probably_damaging(0.964) TCGA-WC-A881-01 6 31736929 31736929 G A VWA7 Missense_Mutation p.R457C 0.28 deleterious(0) probably_damaging(1) TCGA-WC-A881-01 6 42978205 42978205 G C PPP2R5D Splice_Site p.X460_splice 0.25 TCGA-WC-A882-01 10 135123360 135123360 C T ZNF511 Missense_Mutation p.T103M 0.37 tolerated(0.22) benign(0.062) TCGA-WC-A882-01 15 45464122 45464122 G A SHF Silent p.R348R 0.52 TCGA-WC-A882-01 17 74732943 74732969 GTGGTGTGAGTCCGGGGGGCGGCCGTA - SRSF2 In_Frame_Del p.Y92_H100del 0.21 TCGA-WC-A882-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.37 deleterious(0) probably_damaging(0.911) TCGA-WC-A882-01 19 52715983 52715983 G A PPP2R1A Missense_Mutation p.R183Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-WC-A882-01 19 53884788 53884788 G A ZNF525 Missense_Mutation p.R319K 0.18 tolerated(0.21) benign(0.005) TCGA-WC-A882-01 1 169519912 169519912 A C F5 Silent p.P454P 0.05 TCGA-WC-A882-01 1 90470840 90470840 A G ZNF326 Intron 0.71 TCGA-WC-A882-01 2 109297203 109297203 C G LIMS1 Silent p.T342T 0.22 TCGA-WC-A882-01 2 212484000 212484000 C A ERBB4 Missense_Mutation p.G735C 0.21 deleterious(0) probably_damaging(1) TCGA-WC-A882-01 3 101378836 101378836 G A ZBTB11 Nonsense_Mutation p.R613* 0.05 TCGA-WC-A882-01 3 63638463 63638463 A T SNTN Missense_Mutation p.M34L 0.33 tolerated(0.05) possibly_damaging(0.539) TCGA-WC-A882-01 4 10444852 10444852 C T ZNF518B Missense_Mutation p.C1034Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-WC-A882-01 5 140769318 140769318 G A PCDHGB4 Missense_Mutation p.E623K 0.35 deleterious(0.01) probably_damaging(0.944) TCGA-WC-A882-01 6 129663539 129663539 T C LAMA2 Missense_Mutation p.Y1455H 0.27 deleterious(0.01) possibly_damaging(0.853) TCGA-WC-A882-01 X 151127067 151127067 G T GABRE Intron 0.15 TCGA-WC-A883-01 11 62417350 62417350 G A INTS5 Missense_Mutation p.P68S 0.43 tolerated(0.18) possibly_damaging(0.591) TCGA-WC-A883-01 12 62777866 62777866 C T USP15 Missense_Mutation p.A419V 0.41 deleterious(0) probably_damaging(0.999) TCGA-WC-A883-01 17 18178102 18178102 A G TOP3A 3'UTR 0.44 TCGA-WC-A883-01 19 43708091 43708091 T A PSG4 Missense_Mutation p.K126M 0.38 deleterious(0.03) benign(0.22) TCGA-WC-A883-01 1 65339052 65339052 C T JAK1 Splice_Site p.X161_splice 0.64 TCGA-WC-A883-01 20 43926902 43926902 C T MATN4 Missense_Mutation p.R445H 0.69 possibly_damaging(0.852) TCGA-WC-A883-01 22 29621189 29621189 G T EMID1 Silent p.R129R 0.42 TCGA-WC-A883-01 2 220107630 220107630 A G GLB1L Missense_Mutation p.W84R 0.06 deleterious(0) probably_damaging(1) TCGA-WC-A883-01 4 2951844 2951844 C T NOP14 Missense_Mutation p.G367R 0.43 tolerated(0.45) benign(0.004) TCGA-WC-A883-01 4 68530982 68530982 A G UBA6 Silent p.G274G 0.44 TCGA-WC-A883-01 8 145151500 145151501 - ACTACT CYC1 In_Frame_Ins p.Y210_V211insYY 0.14 TCGA-WC-A883-01 9 109691298 109691298 G A ZNF462 Missense_Mutation p.C1702Y 0.31 probably_damaging(0.993) TCGA-WC-A883-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.38 deleterious(0) probably_damaging(0.999) TCGA-WC-A883-01 X 50213356 50213356 C G DGKK RNA 0.46 TCGA-WC-A884-01 11 118827044 118827044 C T UPK2 5'UTR 0.12 TCGA-WC-A884-01 11 118827045 118827045 C T UPK2 5'UTR 0.12 TCGA-WC-A884-01 11 62557411 62557411 C T TMEM179B Silent p.V184V 0.06 TCGA-WC-A884-01 12 111748381 111748381 C T CUX2 Missense_Mutation p.R599C 0.13 deleterious(0) probably_damaging(0.993) TCGA-WC-A884-01 12 70087541 70087541 C T BEST3 Missense_Mutation p.V132I 0.28 tolerated(0.13) benign(0.252) TCGA-WC-A884-01 14 50085633 50085633 T C RPL36AL Missense_Mutation p.K64E 0.14 tolerated(0.06) probably_damaging(0.93) TCGA-WC-A884-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.46 deleterious(0) probably_damaging(0.911) TCGA-WC-A884-01 1 45293304 45293304 G A PTCH2 Missense_Mutation p.T714M 0.38 deleterious(0.03) benign(0.296) TCGA-WC-A884-01 4 79792103 79792103 G A BMP2K Silent p.Q466Q 0.15 TCGA-WC-A884-01 9 35380591 35380591 G A UNC13B Missense_Mutation p.E695K 0.05 deleterious(0) probably_damaging(0.994) TCGA-WC-A884-01 X 118109321 118109321 C T LONRF3 Missense_Mutation p.A193V 0.08 tolerated(0.43) possibly_damaging(0.782) TCGA-WC-A884-01 X 20156735 20156735 C G EIF1AX Missense_Mutation p.G8R 0.50 deleterious(0.03) unknown(0) TCGA-WC-A884-01 X 34148577 34148577 T C FAM47A Missense_Mutation p.K607E 0.46 tolerated(0.05) probably_damaging(0.953) TCGA-WC-A885-01 10 123298226 123298226 G A FGFR2 Nonsense_Mutation p.R210* 0.49 TCGA-WC-A885-01 11 111715342 111715342 G A ALG9 Silent p.L163L 0.48 TCGA-WC-A885-01 11 121429472 121429472 A T SORL1 Missense_Mutation p.I946F 0.31 deleterious(0.05) benign(0.172) TCGA-WC-A885-01 12 109182113 109182113 C T SSH1 Missense_Mutation p.R934Q 0.51 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WC-A885-01 12 122392079 122392079 A G WDR66 Silent p.L458L 0.58 TCGA-WC-A885-01 12 333591 333591 G A SLC6A13 Silent p.V383V 0.47 TCGA-WC-A885-01 12 57003582 57003582 A C BAZ2A Missense_Mutation p.V679G 0.36 deleterious(0) probably_damaging(0.996) TCGA-WC-A885-01 14 55424348 55424348 C T WDHD1 Missense_Mutation p.V903I 0.40 tolerated(0.51) benign(0.013) TCGA-WC-A885-01 18 6985237 6985237 T A LAMA1 Missense_Mutation p.S1887C 0.39 deleterious(0.02) probably_damaging(0.928) TCGA-WC-A885-01 19 10365278 10365278 C T MRPL4 Missense_Mutation p.H97Y 0.44 tolerated(0.06) benign(0.443) TCGA-WC-A885-01 19 35719115 35719115 G A FAM187B Missense_Mutation p.P157S 0.48 deleterious(0.01) probably_damaging(0.976) TCGA-WC-A885-01 1 100741270 100741270 A G RTCA Missense_Mutation p.N257S 0.48 tolerated(1) benign(0) TCGA-WC-A885-01 1 216692613 216692613 T C ESRRG Missense_Mutation p.K350R 0.47 tolerated(1) benign(0.003) TCGA-WC-A885-01 21 47904693 47904693 G T DIP2A Nonsense_Mutation p.E39* 0.29 TCGA-WC-A885-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.43 deleterious(0) probably_damaging(1) TCGA-WC-A885-01 4 159076823 159076823 A G FAM198B Silent p.G363G 0.44 TCGA-WC-A885-01 5 7859575 7859575 T C FASTKD3 Silent p.Q654Q 0.38 TCGA-WC-A885-01 6 16327258 16327258 G C ATXN1 Silent p.L428L 0.25 TCGA-WC-A885-01 6 30135042 30135042 G A TRIM15 Silent p.V157V 0.68 TCGA-WC-A885-01 6 42196196 42196196 C T TRERF1 Missense_Mutation p.D1164N 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.555) TCGA-WC-A885-01 7 157177640 157177656 CAACTTCAAATCGATAT - DNAJB6 Frame_Shift_Del p.K189Nfs*2 0.16 TCGA-WC-A885-01 7 2740257 2740257 C G AMZ1 Missense_Mutation p.L58V 0.52 deleterious(0.01) possibly_damaging(0.607) TCGA-WC-A885-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.46 deleterious(0) probably_damaging(0.999) TCGA-WC-A885-01 9 86894188 86894188 C A SLC28A3 Silent p.L647L 0.36 TCGA-WC-A888-01 10 75053041 75053041 C T TTC18 Missense_Mutation p.A654T 0.18 deleterious(0) probably_damaging(0.995) TCGA-WC-A888-01 11 58274720 58274720 A G OR5B21 Missense_Mutation p.Y287H 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-WC-A888-01 15 39874483 39874483 G - THBS1 Frame_Shift_Del p.D53Tfs*14 0.16 TCGA-WC-A888-01 17 74732373 74732390 GATCTGGAGACCGACGAG - SRSF2 In_Frame_Del p.S174_S179del 0.20 TCGA-WC-A888-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.33 deleterious(0) probably_damaging(0.911) TCGA-WC-A888-01 1 159162404 159162404 C T CADM3 Missense_Mutation p.T123M 0.16 deleterious(0) possibly_damaging(0.849) TCGA-WC-A888-01 1 160722981 160722981 C T SLAMF7 3'UTR 0.26 TCGA-WC-A888-01 1 162737092 162737092 C T DDR2 Silent p.L412L 0.23 TCGA-WC-A888-01 21 15554114 15554114 G T LIPI Missense_Mutation p.A224E 0.10 deleterious(0) probably_damaging(1) TCGA-WC-A888-01 22 30661053 30661053 G T OSM Missense_Mutation p.L39I 0.10 deleterious(0.01) probably_damaging(0.949) TCGA-WC-A888-01 2 214794781 214794781 G A SPAG16 Missense_Mutation p.A438T 0.10 deleterious(0.03) benign(0.238) TCGA-WC-A888-01 2 54845327 54845327 G A SPTBN1 Missense_Mutation p.E254K 0.08 deleterious(0) probably_damaging(0.997) TCGA-WC-A888-01 3 57627390 57627390 A G DENND6A Silent p.L374L 0.24 TCGA-WC-A888-01 4 8588969 8588969 A G GPR78 Missense_Mutation p.D324G 0.19 tolerated_low_confidence(0.23) benign(0) TCGA-WC-A888-01 5 141059986 141059986 T G ARAP3 Missense_Mutation p.D23A 0.10 deleterious(0) probably_damaging(0.996) TCGA-WC-A888-01 7 141618729 141618729 C A OR9A4 Silent p.G18G 0.08 TCGA-WC-A888-01 9 141016204 141016204 C T CACNA1B Missense_Mutation p.P2258L 0.24 deleterious(0) probably_damaging(0.999) TCGA-WC-A88A-01 11 45204514 45204514 C G PRDM11 Missense_Mutation p.A109G 0.46 deleterious(0) probably_damaging(0.986) TCGA-WC-A88A-01 12 125298848 125298848 C T SCARB1 Missense_Mutation p.G177D 0.07 tolerated(0.1) benign(0.114) TCGA-WC-A88A-01 12 132633397 132633397 G T NOC4L Missense_Mutation p.Q286H 0.27 deleterious(0.04) benign(0.003) TCGA-WC-A88A-01 15 40591139 40591139 G A PLCB2 Missense_Mutation p.T237M 0.47 deleterious(0) possibly_damaging(0.898) TCGA-WC-A88A-01 15 83218265 83218265 T C CPEB1 Silent p.L448L 0.34 TCGA-WC-A88A-01 15 83936923 83936923 C T BNC1 Missense_Mutation p.R54H 0.49 deleterious(0) probably_damaging(0.912) TCGA-WC-A88A-01 17 27620994 27620994 C G NUFIP2 Missense_Mutation p.Q28H 0.06 deleterious_low_confidence(0) unknown(0) TCGA-WC-A88A-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.39 deleterious(0) probably_damaging(0.911) TCGA-WC-A88A-01 19 42839498 42839498 C A MEGF8 Silent p.S263S 0.05 TCGA-WC-A88A-01 1 93812222 93812222 A G DR1 Missense_Mutation p.N7S 0.50 tolerated(0.42) benign(0.006) TCGA-WC-A88A-01 22 46615723 46615723 C T PPARA Nonsense_Mutation p.R175* 0.18 TCGA-WC-A88A-01 3 77542506 77542506 A G ROBO2 Missense_Mutation p.K276R 0.06 tolerated(0.23) possibly_damaging(0.621) TCGA-WC-A88A-01 4 84193246 84193246 C A COQ2 Missense_Mutation p.A258S 0.16 deleterious(0.03) benign(0.185) TCGA-WC-A88A-01 6 28097340 28097340 T C ZSCAN16 Missense_Mutation p.I220T 0.58 tolerated(0.27) benign(0) TCGA-WC-A88A-01 6 41773545 41773545 G A USP49 Missense_Mutation p.R393C 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-WC-A88A-01 7 99758431 99758431 C T GAL3ST4 Missense_Mutation p.G194D 0.32 tolerated(0.19) benign(0.049) TCGA-WC-A88A-01 9 113265410 113265410 A G SVEP1 Missense_Mutation p.V464A 0.46 benign(0.032) TCGA-WC-AA9A-01 11 63884416 63884416 G A FLRT1 Missense_Mutation p.R226H 0.27 tolerated(0.06) possibly_damaging(0.581) TCGA-WC-AA9A-01 12 113723746 113723746 C G TPCN1 Nonsense_Mutation p.Y574* 0.62 TCGA-WC-AA9A-01 12 56705072 56705072 G A CNPY2 Missense_Mutation p.R111W 0.46 deleterious(0) probably_damaging(0.966) TCGA-WC-AA9A-01 14 68944496 68944496 T A RAD51B Intron 0.46 TCGA-WC-AA9A-01 17 8789831 8789831 G A PIK3R5 Missense_Mutation p.A666V 0.06 deleterious(0) probably_damaging(1) TCGA-WC-AA9A-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.33 deleterious(0) probably_damaging(0.911) TCGA-WC-AA9A-01 1 162467701 162467701 G C UHMK1 5'UTR 0.44 TCGA-WC-AA9A-01 20 45362452 45362452 C G SLC2A10 Missense_Mutation p.I535M 0.52 tolerated(0.12) possibly_damaging(0.644) TCGA-WC-AA9A-01 2 198267360 198267360 T G SF3B1 Missense_Mutation p.K666T 0.44 deleterious(0) probably_damaging(0.994) TCGA-WC-AA9A-01 3 52441217 52441217 C G BAP1 Missense_Mutation p.G185R 1.00 deleterious(0.04) possibly_damaging(0.856) TCGA-WC-AA9A-01 5 107216757 107216757 C A FBXL17 Missense_Mutation p.G649V 0.36 deleterious(0.01) benign(0.383) TCGA-WC-AA9A-01 5 112179702 112179702 A C APC Missense_Mutation p.Q2804P 0.54 probably_damaging(0.999) TCGA-WC-AA9A-01 5 133707273 133707273 G A UBE2B 5'UTR 0.50 TCGA-WC-AA9A-01 6 31852696 31852696 G A EHMT2 Missense_Mutation p.T814I 0.06 deleterious(0.03) possibly_damaging(0.863) TCGA-WC-AA9E-01 11 73073583 73073583 G A ARHGEF17 Silent p.A1600A 0.33 TCGA-WC-AA9E-01 12 49959401 49959401 C - MCRS1 Frame_Shift_Del p.A80Qfs*53 0.32 TCGA-WC-AA9E-01 15 25313008 25313008 G A SNORD116-7 RNA 0.50 TCGA-WC-AA9E-01 17 73695881 73695881 T C SAP30BP Missense_Mutation p.V109A 0.06 deleterious(0.03) possibly_damaging(0.497) TCGA-WC-AA9E-01 18 54603067 54603067 T A WDR7 Silent p.S1254S 0.53 TCGA-WC-AA9E-01 19 1005224 1005224 G T GRIN3B Missense_Mutation p.W575L 0.31 deleterious(0) probably_damaging(0.992) TCGA-WC-AA9E-01 19 1809699 1809699 G T ATP8B3 Silent p.A115A 0.20 TCGA-WC-AA9E-01 19 3114962 3114962 G A GNA11 Missense_Mutation p.R166H 0.05 deleterious(0.03) probably_damaging(0.968) TCGA-WC-AA9E-01 19 57868113 57868113 C T ZNF304 Silent p.H292H 0.25 TCGA-WC-AA9E-01 1 169698468 169698468 A T SELE Missense_Mutation p.C317S 0.37 deleterious(0) probably_damaging(0.993) TCGA-WC-AA9E-01 22 23406237 23406237 C T RTDR1 Missense_Mutation p.E166K 0.40 tolerated(0.15) benign(0.025) TCGA-WC-AA9E-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.46 deleterious(0) probably_damaging(1) TCGA-WC-AA9E-01 2 215865502 215865502 G C ABCA12 Missense_Mutation p.Q1036E 0.44 deleterious(0) benign(0.396) TCGA-WC-AA9E-01 2 239237343 239237343 C T TRAF3IP1 Missense_Mutation p.A124V 0.06 deleterious(0) possibly_damaging(0.829) TCGA-WC-AA9E-01 2 71797031 71797031 G A DYSF Silent p.Q982Q 0.06 TCGA-WC-AA9E-01 3 49395248 49395248 A G GPX1 Intron 0.50 TCGA-WC-AA9E-01 3 53796064 53796064 A T CACNA1D Missense_Mutation p.I1296F 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-WC-AA9E-01 4 62599230 62599230 G A LPHN3 Missense_Mutation p.V385M 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-WC-AA9E-01 5 179226505 179226505 C T MGAT4B Splice_Site p.X362_splice 0.41 TCGA-WC-AA9E-01 5 68809848 68809848 G A OCLN Missense_Mutation p.R268Q 0.39 deleterious(0) probably_damaging(0.951) TCGA-WC-AA9E-01 6 31605390 31605390 G A PRRC2A 3'UTR 0.35 TCGA-WC-AA9E-01 8 113585861 113585861 G C CSMD3 Missense_Mutation p.T1304S 0.13 tolerated(0.72) benign(0.016) TCGA-WC-AA9E-01 9 80409488 80409488 T A GNAQ Missense_Mutation p.Q209L 0.42 deleterious(0) probably_damaging(0.999) TCGA-WC-AA9E-01 X 153908520 153908520 C T GAB3 Silent p.E512E 0.94 TCGA-YZ-A980-01 10 73588803 73588803 T C PSAP Missense_Mutation p.N136S 0.15 tolerated(0.69) benign(0.006) TCGA-YZ-A980-01 13 99100603 99100603 C G FARP1 3'UTR 0.26 TCGA-YZ-A980-01 14 63269191 63269191 G A KCNH5 Missense_Mutation p.R560C 0.13 deleterious(0) probably_damaging(0.945) TCGA-YZ-A980-01 17 4846548 4846548 G A RNF167 Missense_Mutation p.G182E 0.21 deleterious(0) possibly_damaging(0.706) TCGA-YZ-A980-01 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.22 deleterious(0) probably_damaging(0.911) TCGA-YZ-A980-01 19 42342289 42342289 C T LYPD4 Silent p.S86S 0.09 TCGA-YZ-A980-01 20 43653753 43653753 G A STK4 Silent p.Q429Q 0.15 TCGA-YZ-A980-01 22 31816310 31816310 A G DRG1 Missense_Mutation p.I161V 0.22 deleterious(0) possibly_damaging(0.644) TCGA-YZ-A980-01 2 49381416 49381416 A G FSHR Silent p.N47N 0.24 TCGA-YZ-A980-01 3 183856019 183856019 C T EIF2B5 Silent p.S250S 0.24 TCGA-YZ-A980-01 3 40353009 40353010 - T EIF1B Frame_Shift_Ins p.I83Yfs*6 0.16 TCGA-YZ-A980-01 3 52439229 52439229 G - BAP1 Frame_Shift_Del p.P338Lfs*24 0.24 TCGA-YZ-A980-01 4 189068325 189068325 G A TRIML1 Silent p.E402E 0.25 TCGA-YZ-A980-01 6 35393805 35393805 C G PPARD Silent p.T425T 0.15 TCGA-YZ-A980-01 8 22475962 22475963 - A CCAR2 Frame_Shift_Ins p.E726Rfs*86 0.23 TCGA-YZ-A982-01 13 37269336 37269336 G A SERTM1 Missense_Mutation p.V41I 0.04 deleterious_low_confidence(0.04) probably_damaging(0.981) TCGA-YZ-A982-01 13 49281339 49281339 T A CYSLTR2 Missense_Mutation p.L129Q 0.43 deleterious(0) probably_damaging(1) TCGA-YZ-A982-01 13 80911791 80911791 G A SPRY2 Missense_Mutation p.T17M 0.48 tolerated(0.18) benign(0.001) TCGA-YZ-A982-01 15 52903343 52903343 G A FAM214A Nonsense_Mutation p.R172* 0.16 TCGA-YZ-A982-01 16 15690613 15690613 C G KIAA0430 Missense_Mutation p.K1722N 0.65 deleterious(0) probably_damaging(0.92) TCGA-YZ-A982-01 17 79411771 79411771 T A RP11-1055B8.7 Missense_Mutation p.F864I 0.45 benign(0.426) TCGA-YZ-A982-01 17 80828169 80828169 T C TBCD Missense_Mutation p.V463A 0.45 deleterious(0) possibly_damaging(0.529) TCGA-YZ-A982-01 19 52724255 52724255 A C PPP2R1A Missense_Mutation p.T463P 0.40 deleterious(0) possibly_damaging(0.63) TCGA-YZ-A982-01 19 9083332 9083332 G A MUC16 Missense_Mutation p.A2828V 0.28 unknown(0) TCGA-YZ-A982-01 1 158612731 158612731 C T SPTA1 Missense_Mutation p.R1493Q 0.56 tolerated(0.05) benign(0.003) TCGA-YZ-A982-01 1 176563716 176563716 C T PAPPA2 Missense_Mutation p.R326C 0.29 deleterious(0) probably_damaging(0.94) TCGA-YZ-A982-01 2 167056074 167056074 A G SCN9A Missense_Mutation p.F1681S 0.47 deleterious(0) probably_damaging(1) TCGA-YZ-A982-01 2 220352973 220352973 C G SPEG Missense_Mutation p.A2600G 0.33 probably_damaging(0.998) TCGA-YZ-A982-01 2 39456674 39456674 T C CDKL4 5'Flank 0.52 TCGA-YZ-A982-01 3 151165887 151165887 C T IGSF10 Missense_Mutation p.G628S 0.22 deleterious(0.02) probably_damaging(0.964) TCGA-YZ-A982-01 3 160786656 160786656 G A PPM1L Missense_Mutation p.R265Q 0.06 deleterious(0) probably_damaging(1) TCGA-YZ-A982-01 4 114274935 114274935 G A ANK2 Missense_Mutation p.A1721T 0.60 benign(0.005) TCGA-YZ-A982-01 6 151790148 151790148 G A C6orf211 Missense_Mutation p.G410D 0.37 deleterious(0) probably_damaging(0.994) TCGA-YZ-A982-01 6 28268896 28268896 T G PGBD1 Missense_Mutation p.L422R 0.60 deleterious(0) probably_damaging(0.969) TCGA-YZ-A982-01 7 100679352 100679352 G A MUC17 Missense_Mutation p.S1552N 0.08 unknown(0) TCGA-YZ-A982-01 8 95952120 95952120 C T TP53INP1 Silent p.G147G 0.23 TCGA-YZ-A982-01 9 132400196 132400196 C T ASB6 Missense_Mutation p.R380H 0.60 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YZ-A982-01 9 33301353 33301353 A T NFX1 Missense_Mutation p.S376C 0.26 deleterious(0.01) possibly_damaging(0.765) TCGA-YZ-A982-01 9 93657908 93657908 C T SYK 3'UTR 0.31 TCGA-YZ-A982-01 X 133674386 133674386 C A MIR450A1 RNA 0.08 TCGA-YZ-A983-01 11 47591272 47591272 C T PTPMT1 Silent p.V92V 0.40 TCGA-YZ-A983-01 12 133682620 133682620 G T ZNF140 Missense_Mutation p.A253S 0.15 tolerated(0.13) probably_damaging(0.999) TCGA-YZ-A983-01 12 53216887 53216887 C T KRT79 Missense_Mutation p.R427H 0.47 deleterious(0.01) possibly_damaging(0.807) TCGA-YZ-A983-01 12 6923368 6923368 T C CD4 Missense_Mutation p.F92S 0.49 deleterious(0) probably_damaging(1) TCGA-YZ-A983-01 13 39587518 39587518 T C PROSER1 Missense_Mutation p.H624R 0.42 tolerated(0.88) benign(0.329) TCGA-YZ-A983-01 14 24569263 24569263 G A PCK2 Missense_Mutation p.A359T 0.49 tolerated(0.42) benign(0.008) TCGA-YZ-A983-01 15 91433097 91433097 T G FES Silent p.A318A 0.10 TCGA-YZ-A983-01 16 30099934 30099934 G C TBX6 Missense_Mutation p.I257M 0.47 deleterious(0) probably_damaging(0.999) TCGA-YZ-A983-01 17 41879154 41879154 A C MPP3 Missense_Mutation p.L558R 0.40 deleterious(0) possibly_damaging(0.873) TCGA-YZ-A983-01 1 213146004 213146004 G T VASH2 Missense_Mutation p.V150F 0.41 deleterious(0) possibly_damaging(0.738) TCGA-YZ-A983-01 2 141092048 141092048 A G LRP1B Missense_Mutation p.V4066A 0.45 benign(0.008) TCGA-YZ-A983-01 3 119155786 119155786 G C TMEM39A Missense_Mutation p.L322V 0.40 tolerated(0.45) probably_damaging(0.947) TCGA-YZ-A983-01 3 37368986 37368986 A C GOLGA4 Missense_Mutation p.H1892P 0.73 benign(0.12) TCGA-YZ-A983-01 5 140730154 140730154 C A PCDHGB1 Missense_Mutation p.N109K 0.10 tolerated(0.15) benign(0.252) TCGA-YZ-A983-01 6 154411258 154411258 C T OPRM1 Silent p.L289L 0.42 TCGA-YZ-A983-01 6 170176103 170176103 C T ERMARD Missense_Mutation p.H488Y 0.44 tolerated(0.68) benign(0.003) TCGA-YZ-A983-01 6 84291979 84291979 G A SNAP91 Missense_Mutation p.T704M 0.37 tolerated(0.06) probably_damaging(0.95) TCGA-YZ-A983-01 7 97821218 97821218 G A LMTK2 Missense_Mutation p.A481T 0.09 deleterious(0) probably_damaging(1) TCGA-YZ-A983-01 9 101304173 101304173 G A GABBR2 Silent p.D204D 0.39 TCGA-YZ-A983-01 9 134350898 134350898 C T PRRC2B Missense_Mutation p.R1128W 0.24 deleterious(0) benign(0.028) TCGA-YZ-A983-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.42 deleterious(0) probably_damaging(0.999) TCGA-YZ-A983-01 9 8331704 8331704 C T PTPRD Silent p.Q1804Q 0.07 TCGA-YZ-A984-01 15 28441638 28441638 C A HERC2 Nonsense_Mutation p.E2697* 0.53 TCGA-YZ-A984-01 16 50788282 50788282 G T CYLD Missense_Mutation p.S287I 0.07 deleterious(0.02) benign(0.305) TCGA-YZ-A984-01 17 3833685 3833685 C T ATP2A3 Missense_Mutation p.G885D 0.10 tolerated(0.13) benign(0.002) TCGA-YZ-A984-01 1 14106463 14106463 A G PRDM2 Missense_Mutation p.M725V 0.56 benign(0.014) TCGA-YZ-A984-01 1 241797963 241797963 C T CHML Missense_Mutation p.R369Q 0.28 deleterious(0.01) benign(0.228) TCGA-YZ-A984-01 20 3674277 3674277 C T SIGLEC1 Missense_Mutation p.V1109M 0.52 deleterious(0) probably_damaging(0.996) TCGA-YZ-A984-01 3 194346636 194346636 C T TMEM44 Silent p.K116K 0.83 TCGA-YZ-A984-01 3 52437899 52437899 T - BAP1 Frame_Shift_Del p.K421Rfs*9 0.50 TCGA-YZ-A984-01 4 88414959 88414959 C T SPARCL1 Silent p.T331T 0.55 TCGA-YZ-A984-01 6 110540993 110540993 G A CDC40 Missense_Mutation p.V421I 0.23 tolerated(0.08) possibly_damaging(0.856) TCGA-YZ-A985-01 10 101370891 101370891 G A SLC25A28 Silent p.C270C 0.18 TCGA-YZ-A985-01 10 104592367 104592367 C T CYP17A1 Missense_Mutation p.R347H 0.27 deleterious(0) probably_damaging(0.976) TCGA-YZ-A985-01 10 105971913 105971913 G A WDR96 Missense_Mutation p.S196L 0.20 tolerated(0.2) benign(0.003) TCGA-YZ-A985-01 10 116048825 116048825 G A VWA2 Missense_Mutation p.V567M 0.48 deleterious(0.02) possibly_damaging(0.789) TCGA-YZ-A985-01 10 121551527 121551527 C T INPP5F Silent p.D197D 0.36 TCGA-YZ-A985-01 10 125805354 125805354 G A CHST15 Silent p.S125S 0.06 TCGA-YZ-A985-01 10 24810824 24810824 C T KIAA1217 Missense_Mutation p.R808C 0.46 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 10 30318556 30318556 C T KIAA1462 Missense_Mutation p.R174Q 0.08 deleterious(0.02) probably_damaging(0.973) TCGA-YZ-A985-01 10 34648125 34648125 G A PARD3 Nonsense_Mutation p.R673* 0.31 TCGA-YZ-A985-01 10 43597982 43597982 G A RET Missense_Mutation p.R177Q 0.12 tolerated(0.2) possibly_damaging(0.856) TCGA-YZ-A985-01 10 70516034 70516034 C T CCAR1 Missense_Mutation p.R544C 0.10 deleterious(0) probably_damaging(0.993) TCGA-YZ-A985-01 10 77158605 77158605 C T ZNF503 Missense_Mutation p.A615T 0.33 tolerated(0.06) benign(0.011) TCGA-YZ-A985-01 10 78651328 78651328 G A KCNMA1 Silent p.R1082R 0.40 TCGA-YZ-A985-01 10 95119637 95119637 G A MYOF Nonsense_Mutation p.R1025* 0.20 TCGA-YZ-A985-01 10 99343422 99343422 C T ANKRD2 Silent p.N341N 0.20 TCGA-YZ-A985-01 10 99416154 99416154 G A PI4K2A Missense_Mutation p.R220H 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.817) TCGA-YZ-A985-01 11 102094425 102094425 G A YAP1 Missense_Mutation p.G369R 0.50 tolerated(0.06) benign(0.177) TCGA-YZ-A985-01 11 10648057 10648057 C T MRVI1 Missense_Mutation p.R275H 0.57 tolerated(0.11) benign(0.104) TCGA-YZ-A985-01 11 1095811 1095811 G A MUC2 Missense_Mutation p.G2108S 0.17 unknown(0) TCGA-YZ-A985-01 11 111953260 111953260 G A C11orf57 Missense_Mutation p.R149H 0.06 tolerated(0.71) benign(0.007) TCGA-YZ-A985-01 11 116691776 116691776 G A APOA4 Missense_Mutation p.A333V 0.23 tolerated(0.12) benign(0.26) TCGA-YZ-A985-01 11 117089817 117089817 C T PCSK7 Missense_Mutation p.G463S 0.19 deleterious(0) probably_damaging(0.998) TCGA-YZ-A985-01 11 117301699 117301699 C T DSCAML1 Missense_Mutation p.E1869K 0.59 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 11 117651409 117651409 C T DSCAML1 Missense_Mutation p.A115T 0.53 tolerated(0.16) probably_damaging(0.957) TCGA-YZ-A985-01 11 119144698 119144698 G A CBL Silent p.S237S 0.24 TCGA-YZ-A985-01 11 119535574 119535574 G A PVRL1 Silent p.D479D 0.15 TCGA-YZ-A985-01 11 120827588 120827588 G A GRIK4 Silent p.P600P 0.09 TCGA-YZ-A985-01 11 121000772 121000772 C T TECTA Silent p.N931N 0.26 TCGA-YZ-A985-01 11 125763823 125763823 G A PUS3 Nonsense_Mutation p.R435* 0.06 TCGA-YZ-A985-01 11 129722455 129722455 G A TMEM45B Silent p.P26P 0.38 TCGA-YZ-A985-01 11 133806051 133806051 C T IGSF9B Missense_Mutation p.V240I 0.24 tolerated(0.05) probably_damaging(0.996) TCGA-YZ-A985-01 11 133807352 133807352 G A IGSF9B Missense_Mutation p.R200W 0.55 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 11 17793391 17793391 C T KCNC1 Silent p.G250G 0.36 TCGA-YZ-A985-01 11 19077851 19077851 C T MRGPRX2 Silent p.P33P 0.18 TCGA-YZ-A985-01 11 1950366 1950366 C T TNNT3 Silent p.D33D 0.21 TCGA-YZ-A985-01 11 20676288 20676288 G A SLC6A5 Silent p.P756P 0.46 TCGA-YZ-A985-01 11 27148866 27148866 C T BBOX1 Missense_Mutation p.R344C 0.23 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 11 30938461 30938461 C T DCDC1 Silent p.T1136T 0.26 TCGA-YZ-A985-01 11 33620553 33620553 A G KIAA1549L Intron 0.29 TCGA-YZ-A985-01 11 57428246 57428246 C T CLP1 Missense_Mutation p.R206C 0.12 tolerated(0.06) benign(0.021) TCGA-YZ-A985-01 11 60531221 60531221 C T MS4A15 Silent p.P5P 0.32 TCGA-YZ-A985-01 11 60702219 60702219 G A TMEM132A Missense_Mutation p.G608S 0.14 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 11 61106798 61106798 G A DAK Missense_Mutation p.R126Q 0.28 tolerated(0.05) benign(0.273) TCGA-YZ-A985-01 11 62678236 62678236 C T CHRM1 Missense_Mutation p.V113I 0.17 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 11 63257788 63257788 C T HRASLS5 Missense_Mutation p.A66T 0.22 tolerated_low_confidence(0.09) benign(0.207) TCGA-YZ-A985-01 11 64575121 64575121 C T MEN1 Missense_Mutation p.R234H 0.33 tolerated(0.13) probably_damaging(0.938) TCGA-YZ-A985-01 11 64622812 64622812 C T EHD1 Silent p.P354P 0.26 TCGA-YZ-A985-01 11 65638031 65638031 G A EFEMP2 Missense_Mutation p.R156C 0.69 tolerated(0.18) probably_damaging(0.973) TCGA-YZ-A985-01 11 67812527 67812527 G A TCIRG1 Missense_Mutation p.V375M 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-YZ-A985-01 11 70208475 70208475 G A PPFIA1 Missense_Mutation p.D916N 0.09 deleterious(0) probably_damaging(0.995) TCGA-YZ-A985-01 11 72945667 72945667 G A P2RY2 Missense_Mutation p.G155R 0.11 deleterious(0.03) benign(0.175) TCGA-YZ-A985-01 11 73021350 73021350 G A ARHGEF17 Missense_Mutation p.R556H 0.15 deleterious_low_confidence(0.04) benign(0) TCGA-YZ-A985-01 11 74168452 74168452 G A KCNE3 Missense_Mutation p.R53C 0.46 deleterious(0) probably_damaging(0.95) TCGA-YZ-A985-01 11 74907638 74907638 G A SLCO2B1 Missense_Mutation p.D505N 0.34 deleterious(0.04) possibly_damaging(0.834) TCGA-YZ-A985-01 11 7652162 7652162 C T PPFIBP2 Missense_Mutation p.S324L 0.30 deleterious(0.01) benign(0.002) TCGA-YZ-A985-01 11 76890115 76890115 C T MYO7A Silent p.N769N 0.62 TCGA-YZ-A985-01 11 76912671 76912671 G A MYO7A Silent p.P1677P 0.08 TCGA-YZ-A985-01 11 94113805 94113805 C T GPR83 Missense_Mutation p.R261H 0.13 tolerated(0.75) benign(0.013) TCGA-YZ-A985-01 12 1137128 1137128 G A ERC1 Missense_Mutation p.R20H 0.42 tolerated(0.05) probably_damaging(0.992) TCGA-YZ-A985-01 12 132396495 132396495 C T ULK1 Silent p.G319G 0.53 TCGA-YZ-A985-01 12 14650705 14650705 G A ATF7IP Missense_Mutation p.V1171I 0.48 deleterious_low_confidence(0.03) unknown(0) TCGA-YZ-A985-01 12 2062235 2062235 A G DCP1B Missense_Mutation p.C291R 0.34 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 12 2719791 2719791 G A CACNA1C Missense_Mutation p.V1235M 0.15 tolerated(0.08) benign(0.053) TCGA-YZ-A985-01 12 29671410 29671410 G A TMTC1 Silent p.Y673Y 0.48 TCGA-YZ-A985-01 12 2973852 2973852 C T FOXM1 Missense_Mutation p.A363T 0.06 tolerated(0.19) benign(0.178) TCGA-YZ-A985-01 12 319146 319146 C T SLC6A12 Missense_Mutation p.G3R 0.33 tolerated_low_confidence(0.65) benign(0.001) TCGA-YZ-A985-01 12 32480498 32480498 G A BICD1 Missense_Mutation p.R370Q 0.33 tolerated(0.18) benign(0.02) TCGA-YZ-A985-01 12 41421732 41421732 C T CNTN1 Silent p.V928V 0.19 TCGA-YZ-A985-01 12 49433784 49433784 G A KMT2D Missense_Mutation p.S2590L 0.23 benign(0.023) TCGA-YZ-A985-01 12 50188796 50188796 C T NCKAP5L Silent p.P949P 0.13 TCGA-YZ-A985-01 12 5154303 5154303 G A KCNA5 Silent p.T330T 0.10 TCGA-YZ-A985-01 12 54799459 54799459 G A ITGA5 Silent p.V335V 0.63 TCGA-YZ-A985-01 12 58125237 58125237 C T AGAP2 Missense_Mutation p.R686Q 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-YZ-A985-01 12 58157521 58157521 C T CYP27B1 Missense_Mutation p.R429H 0.06 tolerated(0.56) benign(0.007) TCGA-YZ-A985-01 12 6128639 6128639 G A VWF Silent p.R1315R 0.56 TCGA-YZ-A985-01 12 65857066 65857066 C T MSRB3 Silent p.V181V 0.10 TCGA-YZ-A985-01 12 72288569 72288569 G A TBC1D15 Missense_Mutation p.R271Q 0.48 deleterious(0.04) probably_damaging(0.946) TCGA-YZ-A985-01 12 77417851 77417851 G A E2F7 Nonsense_Mutation p.R894* 0.26 TCGA-YZ-A985-01 12 82752382 82752382 T C METTL25 Missense_Mutation p.L13P 0.08 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 12 88566445 88566445 C T TMTC3 Silent p.A374A 0.25 TCGA-YZ-A985-01 12 91348368 91348368 G A CCER1 Missense_Mutation p.P51L 0.09 tolerated(0.06) benign(0.051) TCGA-YZ-A985-01 13 110804776 110804776 C T COL4A1 Silent p.A1611A 0.41 TCGA-YZ-A985-01 13 110862385 110862385 G A COL4A1 Missense_Mutation p.P186L 0.56 unknown(0) TCGA-YZ-A985-01 13 113772927 113772927 G A F7 Missense_Mutation p.V336M 0.28 tolerated(0.05) possibly_damaging(0.755) TCGA-YZ-A985-01 13 33635718 33635718 C T KL Silent p.T834T 0.06 TCGA-YZ-A985-01 13 33638014 33638014 C T KL Silent p.C910C 0.22 TCGA-YZ-A985-01 13 45857726 45857726 C T GTF2F2 3'UTR 0.13 TCGA-YZ-A985-01 13 46616352 46616352 C T ZC3H13 Missense_Mutation p.V96M 0.09 unknown(0) TCGA-YZ-A985-01 13 52952669 52952669 G A THSD1 Missense_Mutation p.S479L 0.38 deleterious(0) benign(0.304) TCGA-YZ-A985-01 13 98829458 98829458 G A RNF113B Silent p.A11A 0.24 TCGA-YZ-A985-01 14 100992227 100992227 G A WDR25 Silent p.A374A 0.19 TCGA-YZ-A985-01 14 103371684 103371684 G A TRAF3 Missense_Mutation p.D424N 0.15 tolerated(0.08) possibly_damaging(0.877) TCGA-YZ-A985-01 14 106622014 106622014 C T IGHV3-16 Silent p.T77T 0.94 TCGA-YZ-A985-01 14 22783266 22783266 G A TRAV40 Missense_Mutation p.G78R 0.07 tolerated(0.33) benign(0) TCGA-YZ-A985-01 14 23845042 23845042 C T IL25 Missense_Mutation p.R163C 0.49 deleterious(0) probably_damaging(0.959) TCGA-YZ-A985-01 14 24543954 24543954 C T CPNE6 Missense_Mutation p.R208C 0.33 deleterious(0) probably_damaging(0.985) TCGA-YZ-A985-01 14 24642157 24642157 G A REC8 Missense_Mutation p.G59S 0.20 tolerated(0.16) benign(0.276) TCGA-YZ-A985-01 14 58932657 58932657 G A KIAA0586 Missense_Mutation p.D775N 0.11 tolerated(0.05) possibly_damaging(0.894) TCGA-YZ-A985-01 14 67862208 67862208 G A PLEK2 Silent p.T100T 0.07 TCGA-YZ-A985-01 14 70809398 70809398 G A COX16 Nonsense_Mutation p.R40* 0.41 TCGA-YZ-A985-01 14 88945353 88945353 G A PTPN21 Nonsense_Mutation p.R808* 0.14 TCGA-YZ-A985-01 14 89016586 89016586 C T PTPN21 Missense_Mutation p.R59Q 0.20 tolerated(0.16) benign(0.058) TCGA-YZ-A985-01 14 89337996 89337996 C T TTC8 Missense_Mutation p.R385C 0.41 deleterious(0) probably_damaging(0.995) TCGA-YZ-A985-01 14 95080899 95080899 C T SERPINA3 Nonsense_Mutation p.R41* 0.38 TCGA-YZ-A985-01 15 100332288 100332288 C T AC090825.1 5'Flank 0.53 TCGA-YZ-A985-01 15 101440860 101440860 G A ALDH1A3 Missense_Mutation p.V322M 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-YZ-A985-01 15 23932373 23932373 C T NDN 5'UTR 0.45 TCGA-YZ-A985-01 15 29406154 29406154 G A APBA2 Missense_Mutation p.G705R 0.07 deleterious(0.02) probably_damaging(0.983) TCGA-YZ-A985-01 15 34634230 34634230 C T NOP10 Missense_Mutation p.R45Q 0.44 tolerated(0.06) benign(0.408) TCGA-YZ-A985-01 15 40702919 40702919 G A IVD Missense_Mutation p.G130S 0.44 deleterious(0) probably_damaging(0.936) TCGA-YZ-A985-01 15 50264848 50264848 C T ATP8B4 Missense_Mutation p.D392N 0.39 deleterious(0) possibly_damaging(0.833) TCGA-YZ-A985-01 15 63029131 63029131 G A TLN2 Missense_Mutation p.R1138H 0.59 tolerated(0.21) benign(0.109) TCGA-YZ-A985-01 15 65622132 65622132 G A IGDCC3 Silent p.I643I 0.45 TCGA-YZ-A985-01 15 68118635 68118635 C T SKOR1 Nonsense_Mutation p.R343* 0.06 TCGA-YZ-A985-01 15 70347577 70347577 G A TLE3 Silent p.D466D 0.47 TCGA-YZ-A985-01 15 71952898 71952898 C T THSD4 Silent p.S394S 0.13 TCGA-YZ-A985-01 15 73615896 73615896 C T HCN4 Silent p.P846P 0.37 TCGA-YZ-A985-01 15 75310786 75310786 C T SCAMP5 Silent p.F141F 0.17 TCGA-YZ-A985-01 15 83346476 83346476 C T AP3B2 Missense_Mutation p.R442Q 0.67 tolerated(0.13) benign(0.009) TCGA-YZ-A985-01 15 86124462 86124462 G A AKAP13 Missense_Mutation p.D1055N 0.30 deleterious_low_confidence(0.02) benign(0) TCGA-YZ-A985-01 16 105487 105487 T C SNRNP25 Missense_Mutation p.I33T 0.05 tolerated(0.05) possibly_damaging(0.871) TCGA-YZ-A985-01 16 11001145 11001145 G A CIITA Missense_Mutation p.R599Q 0.29 tolerated(0.37) benign(0.001) TCGA-YZ-A985-01 16 1143802 1143802 G A C1QTNF8 Missense_Mutation p.A153V 0.09 deleterious(0.01) benign(0.212) TCGA-YZ-A985-01 16 2012454 2012454 G A RPS2 Intron 0.38 TCGA-YZ-A985-01 16 2258519 2258519 C T MLST8 Missense_Mutation p.T256M 0.05 tolerated(0.12) benign(0.018) TCGA-YZ-A985-01 16 2347526 2347526 G A ABCA3 Silent p.D689D 0.22 TCGA-YZ-A985-01 16 30036680 30036680 G A FAM57B Missense_Mutation p.R217C 0.40 deleterious(0) possibly_damaging(0.867) TCGA-YZ-A985-01 16 30566853 30566853 C T ZNF764 Missense_Mutation p.A297T 0.60 tolerated(0.28) possibly_damaging(0.782) TCGA-YZ-A985-01 16 30793309 30793309 G A ZNF629 Silent p.R780R 0.23 TCGA-YZ-A985-01 16 31374553 31374553 C T ITGAX Missense_Mutation p.A523V 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-YZ-A985-01 16 3254391 3254391 G A OR1F1 Missense_Mutation p.V49I 0.05 tolerated(1) benign(0.001) TCGA-YZ-A985-01 16 4164055 4164055 G A ADCY9 Silent p.I463I 0.10 TCGA-YZ-A985-01 16 4933601 4933601 G A PPL Silent p.F1685F 0.52 TCGA-YZ-A985-01 16 4949058 4949058 C T PPL Missense_Mutation p.D278N 0.35 tolerated(0.14) benign(0.012) TCGA-YZ-A985-01 16 49669602 49669602 C T ZNF423 Missense_Mutation p.R1154Q 0.31 tolerated(0.65) benign(0.018) TCGA-YZ-A985-01 16 49672258 49672258 C T ZNF423 Missense_Mutation p.E269K 0.30 tolerated(0.07) probably_damaging(0.97) TCGA-YZ-A985-01 16 52498045 52498045 G A TOX3 Missense_Mutation p.T70M 0.26 deleterious(0) probably_damaging(0.996) TCGA-YZ-A985-01 16 68026047 68026047 C T DPEP2 Missense_Mutation p.R147H 0.55 deleterious(0.04) possibly_damaging(0.878) TCGA-YZ-A985-01 16 68405352 68405352 C T SMPD3 Missense_Mutation p.V245M 0.80 tolerated(0.12) benign(0.066) TCGA-YZ-A985-01 16 68732183 68732183 G A CDH3 Silent p.A790A 0.07 TCGA-YZ-A985-01 16 72993166 72993166 G A ZFHX3 Silent p.Y293Y 0.53 TCGA-YZ-A985-01 16 72993655 72993655 G A ZFHX3 Silent p.A130A 0.49 TCGA-YZ-A985-01 16 74452059 74452059 C T CLEC18B Silent p.A118A 0.30 TCGA-YZ-A985-01 16 74919625 74919625 C T WDR59 Missense_Mutation p.R872H 0.48 deleterious(0) probably_damaging(0.983) TCGA-YZ-A985-01 16 75203964 75203964 C T ZFP1 Missense_Mutation p.T319M 0.34 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 16 84212998 84212998 C T TAF1C Missense_Mutation p.R720H 0.45 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 16 84229876 84229876 G A ADAD2 Missense_Mutation p.E558K 0.15 tolerated(0.09) benign(0.063) TCGA-YZ-A985-01 16 84482210 84482210 C T ATP2C2 Silent p.N525N 0.35 TCGA-YZ-A985-01 16 87723889 87723889 C T JPH3 Silent p.D641D 0.50 TCGA-YZ-A985-01 16 89614493 89614493 C T SPG7 Silent p.F545F 0.19 TCGA-YZ-A985-01 17 1559772 1559772 C T PRPF8 Missense_Mutation p.G1903R 0.17 tolerated(0.11) probably_damaging(0.988) TCGA-YZ-A985-01 17 17394702 17394702 G A MED9 Missense_Mutation p.E112K 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-YZ-A985-01 17 21201792 21201792 G A MAP2K3 Splice_Site p.X39_splice 0.18 TCGA-YZ-A985-01 17 26912882 26912882 C T SPAG5 Silent p.A580A 0.19 TCGA-YZ-A985-01 17 27613317 27613317 G A NUFIP2 Silent p.Y565Y 0.21 TCGA-YZ-A985-01 17 27902157 27902157 G A GIT1 Silent p.F680F 0.35 TCGA-YZ-A985-01 17 27903361 27903361 G A GIT1 Silent p.G505G 0.12 TCGA-YZ-A985-01 17 38320407 38320407 C T CASC3 Missense_Mutation p.R487W 0.40 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-YZ-A985-01 17 40271407 40271407 C T KAT2A Missense_Mutation p.R310H 0.47 tolerated(0.56) benign(0.047) TCGA-YZ-A985-01 17 40706497 40706497 T C HSD17B1 Missense_Mutation p.L205P 0.69 deleterious(0) possibly_damaging(0.833) TCGA-YZ-A985-01 17 42162392 42162392 C T HDAC5 Missense_Mutation p.E729K 0.34 deleterious(0.01) benign(0.016) TCGA-YZ-A985-01 17 42171083 42171083 G A HDAC5 Missense_Mutation p.R73W 0.21 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-YZ-A985-01 17 43320614 43320614 C T FMNL1 Missense_Mutation p.R714W 0.13 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 17 45258967 45258967 G A CDC27 Nonsense_Mutation p.R22* 0.21 TCGA-YZ-A985-01 17 45742469 45742469 C T KPNB1 Missense_Mutation p.A315V 0.16 tolerated(0.07) benign(0.167) TCGA-YZ-A985-01 17 47041771 47041771 G A GIP Missense_Mutation p.A53V 0.22 deleterious(0) probably_damaging(0.996) TCGA-YZ-A985-01 17 47233948 47233948 G A B4GALNT2 Missense_Mutation p.D221N 0.55 tolerated(0.35) benign(0.002) TCGA-YZ-A985-01 17 47590285 47590285 G A NGFR Missense_Mutation p.A400T 0.41 tolerated(0.25) benign(0.025) TCGA-YZ-A985-01 17 48597028 48597028 C T MYCBPAP Nonsense_Mutation p.R309* 0.18 TCGA-YZ-A985-01 17 55950132 55950132 G A CUEDC1 Missense_Mutation p.R226C 0.11 deleterious(0) possibly_damaging(0.696) TCGA-YZ-A985-01 17 56435311 56435311 C T RNF43 Missense_Mutation p.R609Q 0.42 tolerated_low_confidence(1) benign(0) TCGA-YZ-A985-01 17 61514900 61514900 G A CYB561 Silent p.G3G 0.45 TCGA-YZ-A985-01 17 62018497 62018497 G A SCN4A Silent p.Y1715Y 0.43 TCGA-YZ-A985-01 17 68129132 68129132 C T KCNJ16 Nonsense_Mutation p.R302* 0.30 TCGA-YZ-A985-01 17 7213113 7213113 C T EIF5A Silent p.H83H 0.09 TCGA-YZ-A985-01 17 73569290 73569290 C T LLGL2 Missense_Mutation p.R886C 0.19 deleterious(0.01) probably_damaging(0.915) TCGA-YZ-A985-01 17 73999371 73999371 C T CDK3 Silent p.P228P 0.11 TCGA-YZ-A985-01 17 7499190 7499190 G A FXR2 Silent p.T261T 0.17 TCGA-YZ-A985-01 17 76212052 76212052 C T BIRC5 Missense_Mutation p.P76L 0.40 tolerated_low_confidence(0.1) benign(0.002) TCGA-YZ-A985-01 17 76421569 76421569 C T DNAH17 Silent p.T4356T 0.33 TCGA-YZ-A985-01 17 7696114 7696114 G A DNAH2 Missense_Mutation p.V2429I 0.27 benign(0.396) TCGA-YZ-A985-01 17 77757864 77757864 G A CBX2 Missense_Mutation p.V208I 0.21 tolerated(0.31) benign(0.074) TCGA-YZ-A985-01 17 7852791 7852791 C T CNTROB Missense_Mutation p.P914L 0.06 deleterious_low_confidence(0.03) benign(0.007) TCGA-YZ-A985-01 17 79193765 79193765 C T AZI1 Missense_Mutation p.R31Q 0.46 tolerated(0.21) benign(0.036) TCGA-YZ-A985-01 17 79632514 79632514 C T OXLD1 Missense_Mutation p.R54H 0.11 tolerated(0.35) benign(0.001) TCGA-YZ-A985-01 17 79914795 79914795 G A NOTUM Missense_Mutation p.T284M 0.14 deleterious(0) possibly_damaging(0.709) TCGA-YZ-A985-01 17 79990655 79990655 C T RAC3 Missense_Mutation p.A59V 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.836) TCGA-YZ-A985-01 17 8221893 8221893 C T ARHGEF15 Silent p.I595I 0.50 TCGA-YZ-A985-01 17 9532119 9532119 G A WDR16 Missense_Mutation p.G386S 0.23 deleterious(0) probably_damaging(0.992) TCGA-YZ-A985-01 18 21484018 21484018 G A LAMA3 Missense_Mutation p.R2147Q 0.08 benign(0) TCGA-YZ-A985-01 18 32395925 32395925 C T DTNA Missense_Mutation p.P219L 0.40 deleterious(0) probably_damaging(0.977) TCGA-YZ-A985-01 18 44549170 44549170 G A TCEB3CL Missense_Mutation p.R377C 0.08 deleterious(0) probably_damaging(0.965) TCGA-YZ-A985-01 18 44549182 44549182 C T TCEB3CL Missense_Mutation p.D373N 0.08 deleterious(0) probably_damaging(0.948) TCGA-YZ-A985-01 18 60242302 60242302 C T ZCCHC2 Silent p.N996N 0.20 TCGA-YZ-A985-01 18 63511118 63511118 G A CDH7 Missense_Mutation p.R351H 0.26 tolerated(0.06) benign(0.058) TCGA-YZ-A985-01 18 7231425 7231425 G A LRRC30 Missense_Mutation p.V97M 0.21 deleterious(0.01) probably_damaging(0.915) TCGA-YZ-A985-01 18 76754682 76754682 C T SALL3 Silent p.S897S 0.64 TCGA-YZ-A985-01 19 1054604 1054604 C T ABCA7 Silent p.L1254L 0.12 TCGA-YZ-A985-01 19 10671902 10671902 G A KRI1 Silent p.G182G 0.10 TCGA-YZ-A985-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.72 probably_damaging(0.99) TCGA-YZ-A985-01 19 12758281 12758281 G A MAN2B1 Silent p.S932S 0.19 TCGA-YZ-A985-01 19 12790677 12790677 C T DHPS Silent p.A144A 0.12 TCGA-YZ-A985-01 19 12918311 12918311 C T RNASEH2A Silent p.N134N 0.58 TCGA-YZ-A985-01 19 1360196 1360196 C T MUM1 Silent p.R93R 0.16 TCGA-YZ-A985-01 19 15166256 15166256 G A CASP14 Missense_Mutation p.R179Q 0.13 deleterious(0) probably_damaging(0.985) TCGA-YZ-A985-01 19 15364970 15364970 G A BRD4 Silent p.S717S 0.19 TCGA-YZ-A985-01 19 15918449 15918449 G A OR10H1 Silent p.N133N 0.17 TCGA-YZ-A985-01 19 16860798 16860798 C T NWD1 Missense_Mutation p.R449W 0.06 deleterious(0.01) possibly_damaging(0.84) TCGA-YZ-A985-01 19 17412110 17412110 C T ABHD8 Missense_Mutation p.G106R 0.43 tolerated_low_confidence(0.25) benign(0.246) TCGA-YZ-A985-01 19 1828397 1828397 C T REXO1 Missense_Mutation p.G131S 0.18 tolerated(0.38) benign(0.011) TCGA-YZ-A985-01 19 18778890 18778890 G A KLHL26 Missense_Mutation p.R228H 0.49 tolerated(0.79) benign(0.004) TCGA-YZ-A985-01 19 19115139 19115139 C T SUGP2 Missense_Mutation p.G923S 0.31 tolerated_low_confidence(0.15) benign(0.009) TCGA-YZ-A985-01 19 20235931 20235931 C T CTC-260E6.2 RNA 0.52 TCGA-YZ-A985-01 19 2118737 2118737 C T AP3D1 Missense_Mutation p.V526M 0.18 tolerated(0.15) benign(0.091) TCGA-YZ-A985-01 19 2243426 2243426 C - SF3A2 Frame_Shift_Del p.Q4Sfs*44 0.32 TCGA-YZ-A985-01 19 3061247 3061247 C T AES Silent p.S79S 0.15 TCGA-YZ-A985-01 19 3115012 3115012 C T GNA11 Missense_Mutation p.R183C 0.44 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 19 3179432 3179432 C T S1PR4 Silent p.G214G 0.27 TCGA-YZ-A985-01 19 36430628 36430628 G A LRFN3 Missense_Mutation p.G101S 0.64 tolerated(0.4) benign(0.048) TCGA-YZ-A985-01 19 3778526 3778526 C T MATK Missense_Mutation p.R423Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 19 38573659 38573659 C T SIPA1L3 Missense_Mutation p.T485M 0.17 tolerated(0.17) benign(0.107) TCGA-YZ-A985-01 19 39805081 39805081 G A LRFN1 Missense_Mutation p.P299L 0.67 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 19 40521032 40521032 C T ZNF546 Nonsense_Mutation p.R619* 0.36 TCGA-YZ-A985-01 19 4054867 4054867 C T ZBTB7A Missense_Mutation p.V122M 0.42 deleterious(0) probably_damaging(0.996) TCGA-YZ-A985-01 19 41008365 41008365 G A SPTBN4 Missense_Mutation p.R385H 0.14 deleterious(0.01) possibly_damaging(0.761) TCGA-YZ-A985-01 19 41129854 41129854 C T LTBP4 Silent p.C1299C 0.28 TCGA-YZ-A985-01 19 41594843 41594843 C T CYP2A13 Missense_Mutation p.R64C 0.11 tolerated(0.06) benign(0.017) TCGA-YZ-A985-01 19 45404590 45404590 G A TOMM40 Intron 0.33 TCGA-YZ-A985-01 19 46095082 46095082 C T GPR4 Missense_Mutation p.V15M 0.18 deleterious(0.03) benign(0.003) TCGA-YZ-A985-01 19 46216077 46216077 C T FBXO46 Missense_Mutation p.R226H 0.11 deleterious(0) probably_damaging(0.984) TCGA-YZ-A985-01 19 46915352 46915352 G A CCDC8 Missense_Mutation p.A239V 0.38 benign(0.005) TCGA-YZ-A985-01 19 48204593 48204593 G A GLTSCR1 Missense_Mutation p.V1202M 0.44 probably_damaging(0.912) TCGA-YZ-A985-01 19 50334046 50334046 G A MED25 Missense_Mutation p.A335T 0.21 tolerated(0.26) benign(0.042) TCGA-YZ-A985-01 19 50917082 50917082 C T POLD1 Silent p.A778A 0.21 TCGA-YZ-A985-01 19 50958853 50958853 G A MYBPC2 Missense_Mutation p.G764R 0.27 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 19 5206646 5206646 C T PTPRS 3'UTR 0.38 TCGA-YZ-A985-01 19 54206018 54206018 G A MIR518B RNA 0.08 TCGA-YZ-A985-01 19 54264407 54264407 G A MIR516A2 RNA 0.42 TCGA-YZ-A985-01 19 55284980 55284980 G A KIR2DL1 Missense_Mutation p.R89H 0.20 deleterious(0) benign(0.385) TCGA-YZ-A985-01 19 55316274 55316274 G A KIR2DL4 Missense_Mutation p.A35T 0.18 deleterious(0) probably_damaging(0.981) TCGA-YZ-A985-01 19 56369494 56369494 G A NLRP4 Silent p.S245S 0.48 TCGA-YZ-A985-01 19 5687649 5687649 G A HSD11B1L Missense_Mutation p.R213Q 0.30 tolerated(0.15) benign(0.017) TCGA-YZ-A985-01 19 58549469 58549469 G A ZSCAN1 Missense_Mutation p.A89T 0.40 deleterious(0.02) benign(0.22) TCGA-YZ-A985-01 19 58983109 58983109 G A ZNF324 Missense_Mutation p.R417H 0.45 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 19 7685536 7685536 G A XAB2 Missense_Mutation p.A664V 0.11 tolerated(0.27) benign(0.086) TCGA-YZ-A985-01 19 8601203 8601203 G A MYO1F Missense_Mutation p.A659V 0.14 deleterious(0.02) benign(0.23) TCGA-YZ-A985-01 19 9091523 9091523 C T MUC16 Missense_Mutation p.E98K 0.05 unknown(0) TCGA-YZ-A985-01 1 110022032 110022032 C T SYPL2 Silent p.A227A 0.04 TCGA-YZ-A985-01 1 1190771 1190771 C T UBE2J2 Missense_Mutation p.V214I 0.15 tolerated(0.21) benign(0.018) TCGA-YZ-A985-01 1 120506201 120506201 C T NOTCH2 Silent p.T637T 0.06 TCGA-YZ-A985-01 1 12677172 12677172 C T DHRS3 Missense_Mutation p.R61H 0.29 tolerated(0.46) benign(0.005) TCGA-YZ-A985-01 1 152081633 152081633 G A TCHH Missense_Mutation p.R1354C 0.10 unknown(0) TCGA-YZ-A985-01 1 155041446 155041446 G A EFNA4 Intron 0.23 TCGA-YZ-A985-01 1 155167889 155167889 C T THBS3 Missense_Mutation p.V733I 0.14 tolerated(0.29) benign(0.001) TCGA-YZ-A985-01 1 156703898 156703898 C T RRNAD1 Missense_Mutation p.P245L 0.38 deleterious(0.04) benign(0.003) TCGA-YZ-A985-01 1 156907251 156907251 C T ARHGEF11 Silent p.P1410P 0.09 TCGA-YZ-A985-01 1 158047863 158047863 C T KIRREL Silent p.D95D 0.48 TCGA-YZ-A985-01 1 160105664 160105664 G A ATP1A2 Missense_Mutation p.A774T 0.26 deleterious(0.04) benign(0.227) TCGA-YZ-A985-01 1 162336952 162336952 G A RP11-565P22.6 Missense_Mutation p.A92T 0.38 tolerated(0.54) benign(0.024) TCGA-YZ-A985-01 1 165378811 165378811 C T RXRG Missense_Mutation p.G344S 0.55 deleterious(0.03) probably_damaging(0.972) TCGA-YZ-A985-01 1 167024307 167024307 C T GPA33 Missense_Mutation p.V245M 0.26 deleterious(0.03) benign(0.127) TCGA-YZ-A985-01 1 17023064 17023064 C T ESPNP RNA 0.17 TCGA-YZ-A985-01 1 171086253 171086253 G A FMO3 Missense_Mutation p.E424K 0.62 tolerated(0.37) benign(0.003) TCGA-YZ-A985-01 1 171174750 171174750 G A FMO2 Missense_Mutation p.R387H 0.44 deleterious(0.01) probably_damaging(0.944) TCGA-YZ-A985-01 1 19181079 19181079 G A TAS1R2 Silent p.G295G 0.44 TCGA-YZ-A985-01 1 19557911 19557911 C T EMC1 Silent p.S596S 0.56 TCGA-YZ-A985-01 1 19596161 19596161 C T AKR7L Intron 0.78 TCGA-YZ-A985-01 1 1961509 1961509 G A GABRD Missense_Mutation p.V383I 0.24 tolerated(0.81) benign(0.004) TCGA-YZ-A985-01 1 202920081 202920081 G A ADIPOR1 Missense_Mutation p.R40W 0.40 deleterious(0.02) benign(0.153) TCGA-YZ-A985-01 1 203194835 203194835 G A CHIT1 Silent p.D73D 0.18 TCGA-YZ-A985-01 1 204170925 204170925 C T GOLT1A Silent p.T44T 0.07 TCGA-YZ-A985-01 1 205036303 205036303 C T CNTN2 Missense_Mutation p.R684W 0.10 deleterious(0) probably_damaging(0.994) TCGA-YZ-A985-01 1 207200928 207200928 G T C1orf116 Missense_Mutation p.L6M 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-YZ-A985-01 1 214816120 214816120 G A CENPF Missense_Mutation p.C1480Y 0.47 possibly_damaging(0.66) TCGA-YZ-A985-01 1 21809642 21809642 C T NBPF3 Silent p.N555N 0.49 TCGA-YZ-A985-01 1 21903969 21903969 C T ALPL Missense_Mutation p.A468V 0.08 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 1 22176662 22176662 G A HSPG2 Missense_Mutation p.R2440W 0.23 probably_damaging(1) TCGA-YZ-A985-01 1 228505446 228505446 C T OBSCN Missense_Mutation p.R5572W 0.45 probably_damaging(0.978) TCGA-YZ-A985-01 1 230371780 230371780 G A GALNT2 Missense_Mutation p.R132Q 0.27 tolerated(0.63) benign(0.005) TCGA-YZ-A985-01 1 230819334 230819334 C T COG2 Missense_Mutation p.A394V 0.42 deleterious(0.03) benign(0.406) TCGA-YZ-A985-01 1 234367303 234367303 G A SLC35F3 Missense_Mutation p.V142M 0.46 deleterious(0.05) probably_damaging(0.985) TCGA-YZ-A985-01 1 235827917 235827917 G A LYST Silent p.G3681G 0.18 TCGA-YZ-A985-01 1 237870347 237870347 C T RYR2 Missense_Mutation p.R3227C 0.51 possibly_damaging(0.75) TCGA-YZ-A985-01 1 2445850 2445850 G A PANK4 Missense_Mutation p.A477V 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-YZ-A985-01 1 24669203 24669203 G A GRHL3 Missense_Mutation p.R409H 0.30 deleterious(0) probably_damaging(0.995) TCGA-YZ-A985-01 1 26386770 26386770 C T TRIM63 Missense_Mutation p.R195H 0.46 deleterious(0) benign(0.243) TCGA-YZ-A985-01 1 29475634 29475634 C T SRSF4 Missense_Mutation p.R258H 0.44 deleterious(0.02) possibly_damaging(0.522) TCGA-YZ-A985-01 1 29638168 29638168 G A PTPRU Missense_Mutation p.R1000Q 0.45 tolerated(0.11) benign(0.081) TCGA-YZ-A985-01 1 33960849 33960849 C T ZSCAN20 Missense_Mutation p.R969C 0.56 deleterious(0) probably_damaging(0.998) TCGA-YZ-A985-01 1 34090146 34090146 G A CSMD2 Silent p.I1826I 0.15 TCGA-YZ-A985-01 1 35365688 35365688 C T DLGAP3 Missense_Mutation p.V432M 0.32 tolerated(0.25) benign(0.375) TCGA-YZ-A985-01 1 37307503 37307503 G A GRIK3 Missense_Mutation p.T455M 0.49 tolerated(0.13) possibly_damaging(0.492) TCGA-YZ-A985-01 1 40776803 40776803 G A COL9A2 Missense_Mutation p.R198C 0.28 deleterious(0.01) possibly_damaging(0.898) TCGA-YZ-A985-01 1 42048953 42048953 G A HIVEP3 Missense_Mutation p.R506W 0.37 probably_damaging(0.999) TCGA-YZ-A985-01 1 44386217 44386217 C T ST3GAL3 Missense_Mutation p.R365W 0.44 deleterious(0) probably_damaging(0.994) TCGA-YZ-A985-01 1 44463572 44463572 G A SLC6A9 Silent p.Y627Y 0.20 TCGA-YZ-A985-01 1 46976849 46976849 G A DMBX1 Silent p.P192P 0.33 TCGA-YZ-A985-01 1 47398425 47398425 C T CYP4A11 Intron 0.04 TCGA-YZ-A985-01 1 54610386 54610386 G A CDCP2 Silent p.I60I 0.48 TCGA-YZ-A985-01 1 65141094 65141094 C T CACHD1 Missense_Mutation p.T862M 0.13 deleterious(0) possibly_damaging(0.84) TCGA-YZ-A985-01 1 7731000 7731000 G A CAMTA1 Silent p.P894P 0.52 TCGA-YZ-A985-01 1 86959980 86959980 G A CLCA1 Silent p.T597T 0.46 TCGA-YZ-A985-01 1 8716302 8716302 G A RERE Missense_Mutation p.R19W 0.09 unknown(0) TCGA-YZ-A985-01 1 8716488 8716488 C T RERE 5'UTR 0.12 TCGA-YZ-A985-01 1 9416004 9416004 G A SPSB1 Silent p.T18T 0.05 TCGA-YZ-A985-01 1 977395 977395 C T AGRN Missense_Mutation p.R413C 0.28 deleterious(0.01) possibly_damaging(0.689) TCGA-YZ-A985-01 20 1143802 1143802 G A PSMF1 Missense_Mutation p.G194R 0.54 deleterious(0) probably_damaging(0.991) TCGA-YZ-A985-01 20 20177279 20177279 C T C20orf26 Silent p.R552R 0.32 TCGA-YZ-A985-01 20 23065702 23065702 G A CD93 Silent p.G376G 0.09 TCGA-YZ-A985-01 20 24523712 24523712 G A SYNDIG1 5'UTR 0.08 TCGA-YZ-A985-01 20 30433147 30433147 G A FOXS1 Missense_Mutation p.R67C 0.07 deleterious(0) probably_damaging(0.998) TCGA-YZ-A985-01 20 3145195 3145195 C T LZTS3 Missense_Mutation p.A643T 0.47 tolerated(0.9) benign(0.144) TCGA-YZ-A985-01 20 31571673 31571673 C T SUN5 Missense_Mutation p.R356H 0.12 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 20 33169374 33169374 G A PIGU Silent p.P343P 0.33 TCGA-YZ-A985-01 20 33328468 33328468 G A NCOA6 Silent p.L1864L 0.51 TCGA-YZ-A985-01 20 35635830 35635830 G A RBL1 Missense_Mutation p.A952V 0.23 tolerated(0.05) benign(0.022) TCGA-YZ-A985-01 20 39831218 39831218 C T ZHX3 Missense_Mutation p.R780Q 0.08 deleterious(0.01) possibly_damaging(0.455) TCGA-YZ-A985-01 20 42788529 42788529 G A JPH2 Missense_Mutation p.R300C 0.25 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 20 42885898 42885898 G A GDAP1L1 Missense_Mutation p.E96K 0.32 tolerated(0.08) possibly_damaging(0.905) TCGA-YZ-A985-01 20 43936911 43936911 G A MATN4 5'UTR 0.76 TCGA-YZ-A985-01 20 45000478 45000478 A G ELMO2 Missense_Mutation p.M516T 0.07 tolerated(0.76) benign(0.039) TCGA-YZ-A985-01 20 61511261 61511261 G A DIDO1 Missense_Mutation p.P2016L 0.42 benign(0.387) TCGA-YZ-A985-01 20 860425 860425 C T ANGPT4 Missense_Mutation p.V340M 0.19 deleterious(0.04) benign(0.301) TCGA-YZ-A985-01 20 9389753 9389753 G A PLCB4 Missense_Mutation p.D630N 0.18 deleterious(0.05) probably_damaging(0.931) TCGA-YZ-A985-01 21 36171666 36171666 G A RUNX1 Missense_Mutation p.T300M 0.19 deleterious(0) probably_damaging(0.931) TCGA-YZ-A985-01 21 38137355 38137355 G A HLCS Silent p.S546S 0.42 TCGA-YZ-A985-01 21 45784126 45784126 C T TRPM2 Silent p.G128G 0.33 TCGA-YZ-A985-01 22 18072420 18072420 C T SLC25A18 Silent p.T265T 0.33 TCGA-YZ-A985-01 22 22057670 22057670 C T YPEL1 Missense_Mutation p.G87R 0.54 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 22 26086189 26086189 G A ADRBK2 Missense_Mutation p.A331T 0.07 deleterious(0.03) benign(0.027) TCGA-YZ-A985-01 22 30134421 30134421 C T ZMAT5 Missense_Mutation p.R94Q 0.22 tolerated(0.25) benign(0.008) TCGA-YZ-A985-01 22 32239098 32239098 C T DEPDC5 Missense_Mutation p.R836C 0.13 deleterious(0) possibly_damaging(0.762) TCGA-YZ-A985-01 22 36684926 36684926 C T MYH9 Silent p.T1539T 0.04 TCGA-YZ-A985-01 22 36876736 36876736 C T TXN2 Missense_Mutation p.R50Q 0.39 tolerated(0.08) benign(0.137) TCGA-YZ-A985-01 22 37628860 37628860 G A RAC2 Missense_Mutation p.P69L 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-YZ-A985-01 22 38531030 38531030 C T PLA2G6 Missense_Mutation p.G287R 0.35 deleterious(0) probably_damaging(0.936) TCGA-YZ-A985-01 22 38539156 38539156 C T PLA2G6 Missense_Mutation p.V189I 0.26 tolerated(0.21) benign(0.006) TCGA-YZ-A985-01 22 41621887 41621887 C T L3MBTL2 Silent p.H482H 0.35 TCGA-YZ-A985-01 22 46859996 46859996 G A CELSR1 Missense_Mutation p.A1264V 0.08 tolerated(0.2) probably_damaging(0.999) TCGA-YZ-A985-01 22 50515862 50515862 G A MLC1 Missense_Mutation p.R165W 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YZ-A985-01 22 50861960 50861960 C T PPP6R2 Missense_Mutation p.R349C 0.17 deleterious(0) probably_damaging(0.997) TCGA-YZ-A985-01 22 50899059 50899059 G A SBF1 Missense_Mutation p.P1017L 0.24 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 2 101541694 101541694 C T NPAS2 Missense_Mutation p.T40M 0.07 tolerated(0.08) possibly_damaging(0.463) TCGA-YZ-A985-01 2 111413371 111413371 C T BUB1 Silent p.A607A 0.09 TCGA-YZ-A985-01 2 112705055 112705055 C T MERTK Missense_Mutation p.P223L 0.44 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 2 113940791 113940791 C T PSD4 Missense_Mutation p.A253V 0.48 deleterious_low_confidence(0) benign(0.001) TCGA-YZ-A985-01 2 11774455 11774455 C T GREB1 Silent p.N1730N 0.36 TCGA-YZ-A985-01 2 125204489 125204489 C T CNTNAP5 Missense_Mutation p.T298M 0.34 tolerated(0.21) possibly_damaging(0.505) TCGA-YZ-A985-01 2 131103363 131103363 G A IMP4 Missense_Mutation p.V151I 0.53 tolerated(0.65) benign(0.05) TCGA-YZ-A985-01 2 135738851 135738851 G A MAP3K19 Missense_Mutation p.R1154C 0.51 deleterious(0) probably_damaging(0.977) TCGA-YZ-A985-01 2 152348986 152348986 C T NEB Missense_Mutation p.R8263Q 0.21 probably_damaging(0.986) TCGA-YZ-A985-01 2 162877139 162877139 G T DPP4 Missense_Mutation p.S376R 0.11 deleterious(0.01) probably_damaging(1) TCGA-YZ-A985-01 2 166210904 166210904 C T SCN2A Missense_Mutation p.P1041L 0.16 deleterious(0.03) benign(0.065) TCGA-YZ-A985-01 2 170012798 170012798 C T LRP2 Missense_Mutation p.R4046Q 0.12 benign(0.079) TCGA-YZ-A985-01 2 171371513 171371513 C T MYO3B Silent p.S1151S 0.20 TCGA-YZ-A985-01 2 172641886 172641886 C T SLC25A12 Silent p.T645T 0.21 TCGA-YZ-A985-01 2 172965648 172965648 G A DLX2 Missense_Mutation p.R204W 0.13 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 2 179423251 179423251 C T TTN Missense_Mutation p.V28979I 0.13 TCGA-YZ-A985-01 2 179431174 179431174 C T TTN Missense_Mutation p.R26562Q 0.27 TCGA-YZ-A985-01 2 179634804 179634804 G A TTN Missense_Mutation p.A2875V 0.51 TCGA-YZ-A985-01 2 196788444 196788444 C T DNAH7 Missense_Mutation p.V1234I 0.17 tolerated(1) benign(0.021) TCGA-YZ-A985-01 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.47 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 2 198948757 198948757 G A PLCL1 Silent p.T172T 0.48 TCGA-YZ-A985-01 2 201478596 201478596 G A AOX1 Silent p.S506S 0.06 TCGA-YZ-A985-01 2 208795810 208795810 C T PLEKHM3 Missense_Mutation p.V576M 0.29 deleterious(0) probably_damaging(0.995) TCGA-YZ-A985-01 2 210559486 210559486 C T MAP2 Silent p.L864L 0.08 TCGA-YZ-A985-01 2 218925542 218925542 C T CXCR2P1 RNA 0.23 TCGA-YZ-A985-01 2 219483520 219483520 C T PLCD4 Missense_Mutation p.R134C 0.60 deleterious(0) possibly_damaging(0.724) TCGA-YZ-A985-01 2 220473354 220473354 C T STK11IP Silent p.G562G 0.31 TCGA-YZ-A985-01 2 225688296 225688296 G A DOCK10 Silent p.S1035S 0.17 TCGA-YZ-A985-01 2 231973446 231973446 G A HTR2B Missense_Mutation p.R411C 0.37 tolerated(0.25) benign(0) TCGA-YZ-A985-01 2 233897559 233897559 G A NEU2 Missense_Mutation p.D60N 0.33 tolerated(0.53) benign(0.026) TCGA-YZ-A985-01 2 236659132 236659132 G A AGAP1 Missense_Mutation p.V225I 0.21 tolerated(0.07) possibly_damaging(0.87) TCGA-YZ-A985-01 2 237032585 237032585 G A AGAP1 Missense_Mutation p.R798Q 0.35 tolerated(0.07) probably_damaging(0.998) TCGA-YZ-A985-01 2 241513964 241513964 C T RNPEPL1 Missense_Mutation p.R172C 0.60 deleterious(0.04) probably_damaging(0.995) TCGA-YZ-A985-01 2 241829490 241829490 C T C2orf54 Missense_Mutation p.D276N 0.13 tolerated(0.09) probably_damaging(0.989) TCGA-YZ-A985-01 2 242179190 242179190 G A HDLBP Missense_Mutation p.R813C 0.21 deleterious(0) probably_damaging(0.969) TCGA-YZ-A985-01 2 37349797 37349797 G A EIF2AK2 Missense_Mutation p.R307C 0.44 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 2 48809431 48809431 G A STON1-GTF2A1L Silent p.A553A 0.42 TCGA-YZ-A985-01 2 73828485 73828485 C T ALMS1 Silent p.D4011D 0.12 TCGA-YZ-A985-01 2 74002108 74002108 G A DUSP11 Nonsense_Mutation p.R128* 0.53 TCGA-YZ-A985-01 2 74593736 74593736 C T DCTN1 Silent p.T826T 0.39 TCGA-YZ-A985-01 2 74596484 74596484 C T DCTN1 Silent p.T509T 0.18 TCGA-YZ-A985-01 2 80529349 80529349 C T LRRTM1 3'UTR 0.23 TCGA-YZ-A985-01 3 123049783 123049783 G A ADCY5 Silent p.H533H 0.93 TCGA-YZ-A985-01 3 126915881 126915881 C T C3orf56 Missense_Mutation p.P118L 0.72 tolerated(0.23) possibly_damaging(0.859) TCGA-YZ-A985-01 3 13370329 13370329 C T NUP210 Missense_Mutation p.D1410N 0.89 tolerated(0.47) probably_damaging(0.996) TCGA-YZ-A985-01 3 164906265 164906265 G A SLITRK3 Missense_Mutation p.P785L 0.41 tolerated(0.26) possibly_damaging(0.726) TCGA-YZ-A985-01 3 195474130 195474130 C T MUC4 Missense_Mutation p.G5386R 0.24 benign(0.002) TCGA-YZ-A985-01 3 32030999 32030999 G A ZNF860 Missense_Mutation p.R143Q 0.12 tolerated(1) benign(0) TCGA-YZ-A985-01 3 38355294 38355294 G A SLC22A14 Missense_Mutation p.V414M 0.97 tolerated(0.25) benign(0.02) TCGA-YZ-A985-01 3 53769529 53769529 C T CACNA1D Missense_Mutation p.T937M 0.89 tolerated(0.23) possibly_damaging(0.492) TCGA-YZ-A985-01 3 57131830 57131830 C T IL17RD Missense_Mutation p.R634Q 0.67 tolerated_low_confidence(0.85) benign(0) TCGA-YZ-A985-01 3 78700895 78700895 C T ROBO1 Silent p.A933A 1.00 TCGA-YZ-A985-01 3 9743591 9743591 C T MTMR14 Silent p.I629I 0.96 TCGA-YZ-A985-01 3 9831435 9831435 G A TADA3 Silent p.I140I 0.15 TCGA-YZ-A985-01 4 110882146 110882146 G A EGF Splice_Site p.X397_splice 0.09 TCGA-YZ-A985-01 4 113107979 113107979 G A C4orf32 Missense_Mutation p.R95Q 0.19 tolerated(0.14) benign(0.359) TCGA-YZ-A985-01 4 125592546 125592546 G A ANKRD50 Missense_Mutation p.A629V 0.39 tolerated(1) benign(0.173) TCGA-YZ-A985-01 4 141461345 141461345 G A ELMOD2 Silent p.T141T 0.10 TCGA-YZ-A985-01 4 146058662 146058662 G A OTUD4 Nonsense_Mutation p.R1024* 0.18 TCGA-YZ-A985-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.15 deleterious(0.03) probably_damaging(1) TCGA-YZ-A985-01 4 186295495 186295495 G A LRP2BP Nonsense_Mutation p.R151* 0.40 TCGA-YZ-A985-01 4 2746454 2746454 C T TNIP2 Silent p.A292A 0.27 TCGA-YZ-A985-01 4 3123053 3123053 C T HTT Silent p.P389P 0.47 TCGA-YZ-A985-01 4 47538910 47538910 C T ATP10D Nonsense_Mutation p.R451* 0.07 TCGA-YZ-A985-01 4 52961112 52961112 G A SPATA18 3'UTR 0.31 TCGA-YZ-A985-01 4 55146591 55146591 C T PDGFRA Silent p.S755S 0.41 TCGA-YZ-A985-01 4 647752 647752 G A PDE6B Missense_Mutation p.V275M 0.21 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 4 70810661 70810661 G A CSN1S1 Missense_Mutation p.D166N 0.23 tolerated(0.16) probably_damaging(0.913) TCGA-YZ-A985-01 4 7714541 7714541 C T SORCS2 Silent p.G650G 0.45 TCGA-YZ-A985-01 4 79334177 79334177 G A FRAS1 Missense_Mutation p.A1455T 0.38 benign(0.19) TCGA-YZ-A985-01 4 95198183 95198183 G A SMARCAD1 Missense_Mutation p.R652H 0.05 deleterious(0) probably_damaging(0.98) TCGA-YZ-A985-01 4 955350 955350 C T DGKQ Missense_Mutation p.D827N 0.78 tolerated(0.61) possibly_damaging(0.665) TCGA-YZ-A985-01 4 955530 955530 C T DGKQ Missense_Mutation p.R803Q 0.32 tolerated(0.88) benign(0.004) TCGA-YZ-A985-01 4 96163728 96163728 C T UNC5C Silent p.T320T 0.35 TCGA-YZ-A985-01 5 114951901 114951901 C T TMED7 3'UTR 0.42 TCGA-YZ-A985-01 5 128363005 128363005 C T SLC27A6 Missense_Mutation p.R479C 0.12 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 5 132158676 132158676 C T SHROOM1 Missense_Mutation p.A791T 0.40 tolerated(0.5) benign(0.009) TCGA-YZ-A985-01 5 140554409 140554409 G A PCDHB7 Missense_Mutation p.G665S 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-YZ-A985-01 5 140754748 140754748 C T PCDHGA6 Silent p.I366I 0.07 TCGA-YZ-A985-01 5 14508349 14508349 C T TRIO Missense_Mutation p.R3038C 0.14 unknown(0) TCGA-YZ-A985-01 5 150075212 150075212 C T RBM22 Missense_Mutation p.R201H 0.38 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 5 1501684 1501684 C T LPCAT1 Missense_Mutation p.R57Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 5 150891882 150891882 C T FAT2 Missense_Mutation p.V3917M 0.11 benign(0.013) TCGA-YZ-A985-01 5 153078528 153078528 C T GRIA1 Silent p.H459H 0.05 TCGA-YZ-A985-01 5 154173236 154173236 G A LARP1 Missense_Mutation p.R197H 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-YZ-A985-01 5 154395374 154395374 G A KIF4B Missense_Mutation p.R652H 0.07 tolerated(0.06) benign(0.035) TCGA-YZ-A985-01 5 176520431 176520431 G A FGFR4 Missense_Mutation p.G426S 0.23 tolerated(0.66) benign(0.067) TCGA-YZ-A985-01 5 176637574 176637574 C T NSD1 Missense_Mutation p.T725M 0.51 tolerated_low_confidence(0.28) benign(0.008) TCGA-YZ-A985-01 5 176958324 176958324 C T FAM193B Intron 0.42 TCGA-YZ-A985-01 5 19721471 19721471 C T CDH18 Missense_Mutation p.V210I 0.09 tolerated(0.1) probably_damaging(0.963) TCGA-YZ-A985-01 5 32090677 32090677 G A PDZD2 Missense_Mutation p.G2375S 0.16 tolerated(0.17) possibly_damaging(0.837) TCGA-YZ-A985-01 5 476456 476456 G A SLC9A3 Missense_Mutation p.T643M 0.41 deleterious(0.01) possibly_damaging(0.508) TCGA-YZ-A985-01 5 52358678 52358678 C T ITGA2 Silent p.D507D 0.50 TCGA-YZ-A985-01 5 54420729 54420729 C T CDC20B Missense_Mutation p.G373S 0.11 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 5 57790685 57790685 G A GAPT Missense_Mutation p.D108N 0.05 tolerated(0.27) benign(0.233) TCGA-YZ-A985-01 5 94858978 94858978 G A TTC37 Missense_Mutation p.T562M 0.44 deleterious(0.04) possibly_damaging(0.77) TCGA-YZ-A985-01 5 96219534 96219534 G A ERAP2 Missense_Mutation p.R205H 0.31 deleterious(0) probably_damaging(0.984) TCGA-YZ-A985-01 6 101075567 101075567 C T ASCC3 Missense_Mutation p.R1514Q 0.32 deleterious(0.01) possibly_damaging(0.455) TCGA-YZ-A985-01 6 101075824 101075824 C T ASCC3 Missense_Mutation p.R1472Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-YZ-A985-01 6 107390354 107390354 G A BEND3 Missense_Mutation p.R681W 0.18 deleterious(0) probably_damaging(0.947) TCGA-YZ-A985-01 6 108985561 108985561 G A FOXO3 Missense_Mutation p.V509M 0.33 tolerated(0.14) benign(0.276) TCGA-YZ-A985-01 6 10990061 10990061 C T ELOVL2 Missense_Mutation p.V214M 0.21 tolerated(0.16) possibly_damaging(0.598) TCGA-YZ-A985-01 6 111583554 111583554 G A KIAA1919 Missense_Mutation p.R41H 0.31 deleterious(0) possibly_damaging(0.88) TCGA-YZ-A985-01 6 119509576 119509576 G A MAN1A1 Silent p.A571A 0.14 TCGA-YZ-A985-01 6 121768726 121768726 G A GJA1 Missense_Mutation p.D245N 0.21 tolerated(0.63) benign(0.002) TCGA-YZ-A985-01 6 12292598 12292598 C T EDN1 Missense_Mutation p.A30V 0.04 tolerated(0.18) benign(0.022) TCGA-YZ-A985-01 6 133094153 133094153 G A SLC18B1 Missense_Mutation p.P355L 0.18 tolerated(0.08) benign(0.236) TCGA-YZ-A985-01 6 135778798 135778798 G A AHI1 Nonsense_Mutation p.R329* 0.45 TCGA-YZ-A985-01 6 136888863 136888863 C T MAP3K5 Missense_Mutation p.V1223M 0.15 tolerated(0.26) possibly_damaging(0.802) TCGA-YZ-A985-01 6 144814587 144814587 G A UTRN Missense_Mutation p.A1530T 0.64 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 6 150719260 150719260 C T IYD Missense_Mutation p.P290L 0.08 deleterious_low_confidence(0.01) benign(0.013) TCGA-YZ-A985-01 6 152332878 152332878 C T ESR1 Missense_Mutation p.S395F 0.48 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 6 159181683 159181683 C T SYTL3 Silent p.Y440Y 0.25 TCGA-YZ-A985-01 6 159646638 159646638 G A FNDC1 Missense_Mutation p.R319H 0.37 deleterious(0) unknown(0) TCGA-YZ-A985-01 6 169648976 169648976 C T THBS2 Missense_Mutation p.D49N 0.19 tolerated(0.09) benign(0.002) TCGA-YZ-A985-01 6 170068142 170068142 G A WDR27 Missense_Mutation p.A199V 0.25 deleterious(0.01) probably_damaging(0.97) TCGA-YZ-A985-01 6 31130268 31130268 G A TCF19 Missense_Mutation p.R271H 0.11 tolerated(0.11) benign(0) TCGA-YZ-A985-01 6 31557652 31557652 G A NCR3 Nonsense_Mutation p.R99* 0.46 TCGA-YZ-A985-01 6 31593371 31593371 G A PRRC2A Missense_Mutation p.G248R 0.53 unknown(0) TCGA-YZ-A985-01 6 31687914 31687914 C T LY6G6C Missense_Mutation p.R40H 0.29 tolerated(0.08) benign(0.011) TCGA-YZ-A985-01 6 32017060 32017060 G A TNXB 5'Flank 0.21 TCGA-YZ-A985-01 6 32084485 32084485 C T ATF6B Missense_Mutation p.R598Q 0.52 deleterious(0.03) probably_damaging(0.998) TCGA-YZ-A985-01 6 35437971 35437971 C T RPL10A Missense_Mutation p.A109V 0.08 tolerated(0.08) benign(0.14) TCGA-YZ-A985-01 6 35745315 35745315 T G CLPSL2 Missense_Mutation p.F55C 0.25 deleterious(0) probably_damaging(0.938) TCGA-YZ-A985-01 6 39053698 39053698 G A GLP1R Missense_Mutation p.R414Q 0.49 tolerated(0.43) benign(0.019) TCGA-YZ-A985-01 6 41000848 41000848 C T UNC5CL Missense_Mutation p.E242K 0.46 tolerated(0.85) benign(0.024) TCGA-YZ-A985-01 6 42626026 42626026 G A UBR2 Missense_Mutation p.V1011M 0.40 tolerated(0.17) benign(0.001) TCGA-YZ-A985-01 6 43010840 43010840 C T CUL7 Missense_Mutation p.R1229H 0.22 tolerated(0.07) benign(0.008) TCGA-YZ-A985-01 6 43251679 43251679 G A TTBK1 Silent p.S1067S 0.37 TCGA-YZ-A985-01 6 45515135 45515135 C T RUNX2 3'UTR 0.26 TCGA-YZ-A985-01 6 46678287 46678287 G C PLA2G7 Missense_Mutation p.L258V 0.10 deleterious(0.02) possibly_damaging(0.897) TCGA-YZ-A985-01 6 96651363 96651363 G A FUT9 Missense_Mutation p.R111Q 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-YZ-A985-01 7 100731056 100731056 G A TRIM56 Missense_Mutation p.G155R 0.31 deleterious(0) probably_damaging(0.996) TCGA-YZ-A985-01 7 101259574 101259574 C T MYL10 Silent p.T153T 0.24 TCGA-YZ-A985-01 7 114304409 114304409 G A FOXP2 Missense_Mutation p.V666I 0.49 tolerated(0.92) benign(0.017) TCGA-YZ-A985-01 7 116937892 116937892 G A WNT2 Silent p.H209H 0.16 TCGA-YZ-A985-01 7 117375046 117375046 C T CTTNBP2 Missense_Mutation p.R1266H 0.22 deleterious(0) possibly_damaging(0.709) TCGA-YZ-A985-01 7 122787322 122787322 C T SLC13A1 Missense_Mutation p.V235M 0.18 tolerated(1) benign(0.001) TCGA-YZ-A985-01 7 130138026 130138026 C T MEST Missense_Mutation p.A129V 0.16 tolerated(0.11) benign(0.007) TCGA-YZ-A985-01 7 143826996 143826996 G A OR2A14 Missense_Mutation p.R264H 0.38 tolerated(0.18) benign(0.011) TCGA-YZ-A985-01 7 148802334 148802334 C T ZNF425 Missense_Mutation p.R210Q 0.30 deleterious(0.05) probably_damaging(0.909) TCGA-YZ-A985-01 7 149515812 149515812 C T SSPO RNA 0.19 TCGA-YZ-A985-01 7 150768837 150768837 C T SLC4A2 Silent p.G751G 0.20 TCGA-YZ-A985-01 7 150878399 150878399 C T ASB10 Missense_Mutation p.R244H 0.14 deleterious(0.03) possibly_damaging(0.803) TCGA-YZ-A985-01 7 152345797 152345797 C T XRCC2 Missense_Mutation p.R258H 0.08 tolerated(0.59) benign(0.002) TCGA-YZ-A985-01 7 16720938 16720938 C T BZW2 Missense_Mutation p.T83M 0.17 deleterious(0) possibly_damaging(0.513) TCGA-YZ-A985-01 7 2472887 2472887 G A CHST12 Missense_Mutation p.E205K 0.57 tolerated(0.11) benign(0.354) TCGA-YZ-A985-01 7 2946265 2946265 G A CARD11 3'UTR 0.42 TCGA-YZ-A985-01 7 47333375 47333375 G A TNS3 Missense_Mutation p.P1243L 0.45 deleterious(0.01) possibly_damaging(0.741) TCGA-YZ-A985-01 7 47408251 47408251 C T TNS3 Silent p.A664A 0.17 TCGA-YZ-A985-01 7 47408605 47408605 G A TNS3 Silent p.D546D 0.25 TCGA-YZ-A985-01 7 4917502 4917502 C T RADIL Missense_Mutation p.R90H 0.40 tolerated(0.21) benign(0.039) TCGA-YZ-A985-01 7 4917629 4917629 C T RADIL Missense_Mutation p.A48T 0.45 tolerated(0.23) benign(0.011) TCGA-YZ-A985-01 7 5540761 5540761 G A FBXL18 Missense_Mutation p.A380V 0.49 tolerated(0.31) benign(0.003) TCGA-YZ-A985-01 7 6205175 6205175 C T CYTH3 Splice_Site p.X324_splice 0.48 TCGA-YZ-A985-01 7 72988286 72988286 C T TBL2 Missense_Mutation p.R143H 0.43 deleterious(0.01) possibly_damaging(0.836) TCGA-YZ-A985-01 7 74211498 74211498 G A GTF2IRD2 Missense_Mutation p.R785W 0.49 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 7 81635088 81635088 C T CACNA2D1 Missense_Mutation p.R503H 0.49 deleterious(0.05) benign(0.048) TCGA-YZ-A985-01 7 86526871 86526871 G A KIAA1324L Missense_Mutation p.T879M 0.21 deleterious(0) possibly_damaging(0.897) TCGA-YZ-A985-01 7 99022532 99022532 C T ATP5J2-PTCD1 Silent p.A590A 0.24 TCGA-YZ-A985-01 7 99817744 99817744 G A PVRIG Silent p.P42P 0.62 TCGA-YZ-A985-01 8 102570889 102570889 G A GRHL2 Missense_Mutation p.R176Q 0.24 tolerated(0.44) benign(0.044) TCGA-YZ-A985-01 8 133920513 133920513 C T TG Silent p.Y1310Y 0.06 TCGA-YZ-A985-01 8 134225300 134225300 C T WISP1 Missense_Mutation p.T88M 0.12 deleterious(0) probably_damaging(0.987) TCGA-YZ-A985-01 8 139767423 139767423 C T COL22A1 Missense_Mutation p.A670T 0.35 unknown(0) TCGA-YZ-A985-01 8 142227253 142227253 G A SLC45A4 Silent p.N504N 0.36 TCGA-YZ-A985-01 8 144945210 144945210 C T EPPK1 Missense_Mutation p.V738M 0.10 possibly_damaging(0.889) TCGA-YZ-A985-01 8 144990788 144990788 C T PLEC Missense_Mutation p.D4538N 0.53 probably_damaging(0.953) TCGA-YZ-A985-01 8 16012621 16012621 G A MSR1 Nonsense_Mutation p.R284* 0.06 TCGA-YZ-A985-01 8 21839354 21839354 G A XPO7 Missense_Mutation p.R357Q 0.48 tolerated(0.79) benign(0.005) TCGA-YZ-A985-01 8 23106868 23106868 G A CHMP7 Missense_Mutation p.V149I 0.63 tolerated(0.46) benign(0.035) TCGA-YZ-A985-01 8 30511073 30511073 G A GTF2E2 Nonsense_Mutation p.R15* 0.40 TCGA-YZ-A985-01 8 30541683 30541683 C T GSR Missense_Mutation p.V359I 0.41 deleterious(0) benign(0.18) TCGA-YZ-A985-01 8 3263583 3263583 G A CSMD1 Silent p.N744N 0.35 TCGA-YZ-A985-01 8 37698635 37698635 G A GPR124 Missense_Mutation p.A927T 0.08 deleterious(0) probably_damaging(0.994) TCGA-YZ-A985-01 8 38095674 38095674 G A DDHD2 Missense_Mutation p.R190Q 0.50 deleterious(0.04) possibly_damaging(0.691) TCGA-YZ-A985-01 8 41550657 41550657 C T ANK1 Missense_Mutation p.E1240K 0.05 deleterious(0) possibly_damaging(0.907) TCGA-YZ-A985-01 8 48849060 48849060 G A PRKDC Silent p.N377N 0.33 TCGA-YZ-A985-01 8 73993379 73993379 C T SBSPON Missense_Mutation p.R95H 0.26 deleterious(0) probably_damaging(0.95) TCGA-YZ-A985-01 8 8175725 8175725 G A SGK223 Missense_Mutation p.A1387V 0.50 probably_damaging(0.98) TCGA-YZ-A985-01 8 95140388 95140388 G A CDH17 3'UTR 0.40 TCGA-YZ-A985-01 9 100071854 100071854 C T CCDC180 Silent p.N120N 0.24 TCGA-YZ-A985-01 9 108366571 108366571 G A FKTN Missense_Mutation p.G149R 0.54 deleterious(0.05) benign(0.013) TCGA-YZ-A985-01 9 110084367 110084367 C T RAD23B Missense_Mutation p.T262M 0.12 tolerated(0.17) possibly_damaging(0.547) TCGA-YZ-A985-01 9 115421680 115421680 C T KIAA1958 Silent p.V494V 0.31 TCGA-YZ-A985-01 9 125551867 125551867 C T OR5C1 Missense_Mutation p.T219M 0.36 deleterious(0.02) benign(0.025) TCGA-YZ-A985-01 9 131670351 131670351 C T LRRC8A Missense_Mutation p.T303M 0.44 deleterious(0) probably_damaging(0.994) TCGA-YZ-A985-01 9 131670589 131670589 C T LRRC8A Silent p.Y382Y 0.34 TCGA-YZ-A985-01 9 136328663 136328663 C T CACFD1 Silent p.A60A 0.20 TCGA-YZ-A985-01 9 137697060 137697060 G A COL5A1 Silent p.A1086A 0.50 TCGA-YZ-A985-01 9 137712052 137712052 G A COL5A1 Missense_Mutation p.G1513S 0.22 unknown(0) TCGA-YZ-A985-01 9 138376336 138376336 C T PPP1R26 5'UTR 0.23 TCGA-YZ-A985-01 9 138651621 138651621 C T KCNT1 Silent p.Y317Y 0.53 TCGA-YZ-A985-01 9 138713079 138713079 C T CAMSAP1 Missense_Mutation p.R1143Q 0.47 tolerated(0.38) benign(0.223) TCGA-YZ-A985-01 9 139371003 139371003 G A SEC16A Silent p.A355A 0.35 TCGA-YZ-A985-01 9 140127061 140127061 C T SLC34A3 Silent p.A70A 0.07 TCGA-YZ-A985-01 9 34093293 34093293 G A DCAF12 Nonsense_Mutation p.R339* 0.41 TCGA-YZ-A985-01 9 80412493 80412493 C T GNAQ Missense_Mutation p.R183Q 0.07 deleterious(0.03) probably_damaging(1) TCGA-YZ-A985-01 9 90219978 90219978 C T DAPK1 Missense_Mutation p.R58C 0.40 deleterious(0) possibly_damaging(0.47) TCGA-YZ-A985-01 9 90321557 90321557 G A DAPK1 Missense_Mutation p.G1191S 0.65 deleterious(0.02) possibly_damaging(0.732) TCGA-YZ-A985-01 9 94495610 94495610 C T ROR2 Missense_Mutation p.R244Q 0.25 tolerated(0.62) benign(0.026) TCGA-YZ-A985-01 9 99157146 99157146 C T ZNF367 Missense_Mutation p.R217H 0.38 deleterious(0) probably_damaging(0.965) TCGA-YZ-A985-01 X 100169265 100169265 G A XKRX 3'UTR 0.26 TCGA-YZ-A985-01 X 100808010 100808010 G A ARMCX1 Missense_Mutation p.E33K 0.09 tolerated_low_confidence(0.06) benign(0.122) TCGA-YZ-A985-01 X 100912019 100912019 C T ARMCX2 Missense_Mutation p.E186K 0.34 tolerated_low_confidence(0.54) benign(0.001) TCGA-YZ-A985-01 X 101159302 101159302 G A ZMAT1 Silent p.D41D 0.22 TCGA-YZ-A985-01 X 118774741 118774741 G A SEPT6 Missense_Mutation p.P234L 0.35 deleterious(0.02) probably_damaging(1) TCGA-YZ-A985-01 X 134166518 134166518 C T FAM127A Silent p.G35G 0.17 TCGA-YZ-A985-01 X 136112961 136112961 C T GPR101 Silent p.T291T 0.41 TCGA-YZ-A985-01 X 1413315 1413315 G A CSF2RA Silent p.S247S 0.18 TCGA-YZ-A985-01 X 150908176 150908176 G A CNGA2 Missense_Mutation p.D116N 0.24 tolerated(0.41) benign(0.099) TCGA-YZ-A985-01 X 15306030 15306030 C T ASB11 Missense_Mutation p.V274M 0.17 deleterious(0.04) benign(0.044) TCGA-YZ-A985-01 X 153068801 153068801 G A PDZD4 3'UTR 0.29 TCGA-YZ-A985-01 X 1546804 1546804 G A ASMTL Silent p.D240D 0.06 TCGA-YZ-A985-01 X 18775810 18775810 G A PPEF1 Silent p.P154P 0.44 TCGA-YZ-A985-01 X 18944633 18944633 G A PHKA2 Missense_Mutation p.A466V 0.10 deleterious(0.03) benign(0.097) TCGA-YZ-A985-01 X 20081643 20081643 G A MAP7D2 Silent p.Y87Y 0.47 TCGA-YZ-A985-01 X 21886609 21886609 C T MBTPS2 Missense_Mutation p.A232V 0.04 tolerated(0.19) benign(0.17) TCGA-YZ-A985-01 X 41333540 41333540 C T NYX Silent p.A278A 0.30 TCGA-YZ-A985-01 X 43702951 43702951 G A MAOB Missense_Mutation p.R36W 0.26 deleterious(0) probably_damaging(0.999) TCGA-YZ-A985-01 X 47485874 47485874 G A CFP Nonsense_Mutation p.R329* 0.30 TCGA-YZ-A985-01 X 53602625 53602625 G A HUWE1 Missense_Mutation p.T2003M 0.11 possibly_damaging(0.551) TCGA-YZ-A985-01 X 71349781 71349781 C T RGAG4 Missense_Mutation p.R537H 0.12 tolerated_low_confidence(0.16) unknown(0) TCGA-YZ-A985-01 X 71350832 71350832 G A RGAG4 Missense_Mutation p.R187W 0.09 tolerated(0.06) probably_damaging(0.993) TCGA-YZ-A985-01 X 71427099 71427099 G A ERCC6L Silent p.I506I 0.24 TCGA-YZ-A985-01 X 73071059 73071059 G A XIST RNA 0.41 TCGA-YZ-A985-01 X 73751218 73751218 G A SLC16A2 Missense_Mutation p.G484S 0.48 deleterious(0) probably_damaging(1) TCGA-YZ-A985-01 X 77224669 77224669 G A PGAM4 Missense_Mutation p.P156L 0.26 tolerated(1) benign(0) TCGA-YZ-A985-01 X 99662742 99662742 G A PCDH19 Missense_Mutation p.T285M 0.24 deleterious(0.01) possibly_damaging(0.82)