GBM USP46 X17.AAG 0.280115743874727 -0.0852523123549096 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 X17.AAG 0.575739044917308 -0.0430952574220478 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 X17.AAG 0.858839326454447 -0.0180865126695142 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G X17.AAG 0.110440661342489 0.0842290634479359 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 X17.AAG 0.509815637970356 -0.0473663713581081 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 X17.AAG 0.108513279395669 0.0955548240027069 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 X17.AAG 0.135042350850284 0.105114666583932 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR X17.AAG 0.406911347376834 -0.0617729110494096 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH X17.AAG 0.0732648288367842 0.120715517451917 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 X17.AAG 0.400318068317637 0.048090957913733 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 X17.AAG 0.400318068317637 0.048090957913733 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 X17.AAG 0.546942438546017 -0.0312945131169933 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 X17.AAG 0.0271274315747301 -0.180459220788035 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 X17.AAG 0.0244499241034518 -0.176023727439199 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 X17.AAG 0.00482536094546033 -0.193010150282928 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 X17.AAG 0.00482536094546033 -0.193010150282928 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 X17.AAG 0.00229358155991679 -0.198865797354908 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 X17.AAG 0.00149144618617757 -0.197353449555985 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 X17.AAG 0.000176403169093692 -0.190997418931297 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 X17.AAG 0.000176403169093692 -0.190997418931297 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 X17.AAG 0.000107839489476464 -0.198271836415961 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 X17.AAG 0.000101118050521792 -0.204872000668332 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL X17.AAG 0.000114020194228405 -0.20301095755724 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 X17.AAG 5.54176014177563e-05 -0.222400209727414 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 X17.AAG 4.83327938725898e-05 -0.219744941302897 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P X17.AAG 0.861860045621156 -0.00242129286076054 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM X17.AAG 0.690538227463724 0.0200103668713241 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 X17.AAG 0.133598050424314 -0.1133829816262 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B X17.AAG 0.242878517416397 -0.0894974092490517 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B X17.AAG 0.433863183545744 -0.0632985853884405 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 X17.AAG 0.128910435886878 -0.116361847471959 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 X17.AAG 0.029181812220276 0.136474955789328 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 X17.AAG 0.0330596915233439 0.139325072395367 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 X17.AAG 0.458607103492871 -0.0496614827608326 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A X17.AAG 0.0268272974725118 0.105864152382848 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 X17.AAG 0.458458999629645 -0.0501628286570206 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA X17.AAG 0.458607103492871 -0.0496614827608326 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR X17.AAG 0.0681206306304193 0.109538964092391 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 X17.AAG 0.134913130471389 0.0856444730330579 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT X17.AAG 0.455925145040189 -0.0557227777198892 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 X17.AAG 0.0604101153948748 0.119863682706603 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 X17.AAG 0.0604101153948748 0.119863682706603 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS X17.AAG 0.0732648288367842 0.120715517451917 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A X17.AAG 0.143857917526037 0.0842795377312049 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 X17.AAG 0.143857917526037 0.0842795377312049 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC X17.AAG 0.0207330120678772 -0.179974633742713 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE X17.AAG 0.0207330120678772 -0.179974633742713 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 X17.AAG 0.0207330120678772 -0.179974633742713 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS X17.AAG 0.00482536094546033 -0.193010150282928 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 X17.AAG 0.00229358155991679 -0.198865797354908 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A X17.AAG 0.00229358155991679 -0.198865797354908 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C X17.AAG 0.00229358155991679 -0.198865797354908 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 X17.AAG 0.001606755997778 -0.200186063567696 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 X17.AAG 0.001606755997778 -0.200186063567696 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 X17.AAG 0.001606755997778 -0.200186063567696 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 X17.AAG 2.52226219838983e-05 -0.221870544054754 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 X17.AAG 0.000176403169093692 -0.190997418931297 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 X17.AAG 0.000176403169093692 -0.190997418931297 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B X17.AAG 8.67866042998092e-05 -0.203326516478255 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM X17.AAG 0.000114020194228405 -0.20301095755724 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 X17.AAG 0.690538227463724 0.0200103668713241 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 X17.AAG 0.690538227463724 0.0200103668713241 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 X17.AAG 0.433863183545744 -0.0632985853884405 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 AEW541 0.126416753871624 0.0439319876243429 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 AEW541 0.64505753464254 0.00923022800576478 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 AEW541 0.78437802304301 -0.0189080404462023 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G AEW541 0.304409891426935 -0.0377520500904551 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 AEW541 0.943786926474984 -0.0105577887023409 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 AEW541 0.645584855226259 -0.0269467491314392 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 AEW541 0.888608025701744 -0.0089089127540638 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR AEW541 0.454200899450578 0.020341553287897 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH AEW541 1 -0.00517443377262872 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 AEW541 0.62686643266596 0.0102012377619654 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 AEW541 0.62686643266596 0.0102012377619654 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 AEW541 0.969376548821577 -0.00111953109292795 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 AEW541 0.0666671714730524 0.0727595025015642 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 AEW541 0.0578828822150391 0.0698618027950249 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 AEW541 0.0126529051696764 0.0751800602917647 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 AEW541 0.0126529051696764 0.0751800602917647 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 AEW541 0.0221471785682247 0.0685073260896634 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 AEW541 0.00574907447996383 0.0748736252109419 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 AEW541 0.00311354790907324 0.0665633247152559 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 AEW541 0.00311354790907324 0.0665633247152559 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 AEW541 0.00722145757949717 0.0622476720811309 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 AEW541 0.0121729204074267 0.060780170409696 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL AEW541 0.0150559530170058 0.0587205353905336 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 AEW541 0.0128250140437093 0.0649207305971551 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 AEW541 0.00797659381396056 0.0664839188733486 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P AEW541 0.348425699019927 -0.0279314813841001 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM AEW541 0.103378198985145 0.0452351623198548 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 AEW541 0.151047805453313 -0.0509759449832528 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B AEW541 0.0856272625349146 -0.056546052227239 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B AEW541 0.103530959407905 -0.0512458800082649 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 AEW541 0.151047805453313 -0.0510909746147468 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 AEW541 0.846065318565207 -0.0216323660980364 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 AEW541 0.648871554273635 -0.0316630430771878 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 AEW541 0.783868649507872 -0.00273280691095401 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A AEW541 0.724501048038391 0.00184662103997346 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 AEW541 0.907556796254868 -0.00593216234940597 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA AEW541 0.783868649507872 -0.00273280691095401 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR AEW541 0.433410686025926 -0.0344511833717653 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 AEW541 0.757267723479498 -0.0234815216904962 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT AEW541 0.802004778250043 -0.0161257229644884 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 AEW541 0.660591036621715 -0.0190544003402879 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 AEW541 0.660591036621715 -0.0190544003402879 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS AEW541 1 -0.00517443377262872 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A AEW541 0.907225346501942 -0.00105767585153194 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 AEW541 0.907225346501942 -0.00105767585153194 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC AEW541 0.0558389359342867 0.0714555780860191 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE AEW541 0.0558389359342867 0.0714555780860191 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 AEW541 0.0558389359342867 0.0714555780860191 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS AEW541 0.0126529051696764 0.0751800602917647 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 AEW541 0.0221471785682247 0.0685073260896634 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A AEW541 0.0221471785682247 0.0685073260896634 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C AEW541 0.0221471785682247 0.0685073260896634 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 AEW541 0.0104391599180162 0.0724052769687826 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 AEW541 0.0104391599180162 0.0724052769687826 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 AEW541 0.0104391599180162 0.0724052769687826 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 AEW541 0.00143421893250774 0.0743967899412199 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 AEW541 0.00311354790907324 0.0665633247152559 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 AEW541 0.00311354790907324 0.0665633247152559 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B AEW541 0.00773107368181858 0.0624280623637123 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM AEW541 0.0150559530170058 0.0587205353905336 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 AEW541 0.103378198985145 0.0452351623198548 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 AEW541 0.103378198985145 0.0452351623198548 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 AEW541 0.103530959407905 -0.0512458800082649 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 AZD0530 0.778539360666768 -0.0063778574412906 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 AZD0530 0.544977917538422 -0.0276554434173824 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 AZD0530 0.233952350744778 -0.0411724617799066 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G AZD0530 0.664955375241097 0.0129921952163519 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 AZD0530 0.054581624560424 -0.0562895041386499 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 AZD0530 0.755064077435244 0.00763907540659836 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 AZD0530 0.687912199953979 0.0148803956899259 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR AZD0530 0.57388860754765 -0.0181295807095538 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH AZD0530 0.191996072590217 0.044836977198725 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 AZD0530 0.0463402265713733 0.0671739760959725 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 AZD0530 0.0463402265713733 0.0671739760959725 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 AZD0530 0.285896098150287 0.0451259992829668 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 AZD0530 0.809569335121627 0.0148268073528894 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 AZD0530 0.511981987828596 0.030379504411699 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 AZD0530 0.35223289184642 0.0338349558831403 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 AZD0530 0.35223289184642 0.0338349558831403 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 AZD0530 0.267629442895717 0.0373474808717466 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 AZD0530 0.371885147111132 0.0310204290219243 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 AZD0530 0.890993654824306 0.00484722947499505 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 AZD0530 0.890993654824306 0.00484722947499505 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 AZD0530 0.770140564055354 0.00168986487169109 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 AZD0530 0.684276498355871 -0.000969311227970282 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL AZD0530 0.732143923449408 0.00040731276218442 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 AZD0530 0.827622518387147 0.0138948196314015 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 AZD0530 0.939160492045589 0.0113605155085099 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P AZD0530 0.145340654578645 0.0634870721295476 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM AZD0530 0.374141140329489 -0.0228797564460111 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 AZD0530 0.0853859389497472 -0.0432076464948368 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B AZD0530 0.0465789425498891 -0.0513451102976245 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B AZD0530 0.0274187746254149 -0.0559665416475161 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 AZD0530 0.0977151367953208 -0.0418992728184105 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 AZD0530 0.376713351239226 0.0250321548982342 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 AZD0530 0.422341729284084 0.0212417860112191 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 AZD0530 0.0485537854500087 -0.0532889749382877 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A AZD0530 0.643929071330526 0.00734544125684444 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 AZD0530 0.0413943868506721 -0.0566505334085818 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA AZD0530 0.0485537854500087 -0.0532889749382877 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR AZD0530 0.383744193611631 0.0216854926622475 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 AZD0530 0.436761039009994 0.0207602283731306 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT AZD0530 0.0553961715906879 -0.0579877269034171 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 AZD0530 0.32550183994249 0.0338567141813908 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 AZD0530 0.32550183994249 0.0338567141813908 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS AZD0530 0.191996072590217 0.044836977198725 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A AZD0530 0.132353040608485 0.0519009901791344 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 AZD0530 0.132353040608485 0.0519009901791344 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC AZD0530 0.462773131387199 0.0342417704740471 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE AZD0530 0.462773131387199 0.0342417704740471 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 AZD0530 0.462773131387199 0.0342417704740471 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS AZD0530 0.35223289184642 0.0338349558831403 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 AZD0530 0.267629442895717 0.0373474808717466 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A AZD0530 0.267629442895717 0.0373474808717466 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C AZD0530 0.267629442895717 0.0373474808717466 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 AZD0530 0.366172176941484 0.0322724985943235 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 AZD0530 0.366172176941484 0.0322724985943235 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 AZD0530 0.366172176941484 0.0322724985943235 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 AZD0530 0.802183814551873 0.0140182180317007 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 AZD0530 0.890993654824306 0.00484722947499505 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 AZD0530 0.890993654824306 0.00484722947499505 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B AZD0530 0.598221547024154 -0.00274364062610333 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM AZD0530 0.732143923449408 0.00040731276218442 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 AZD0530 0.374141140329489 -0.0228797564460111 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 AZD0530 0.374141140329489 -0.0228797564460111 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 AZD0530 0.0274187746254149 -0.0559665416475161 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 AZD6244 0.0182834184392224 -0.238937644247567 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 AZD6244 0.12312009947155 -0.123204428911119 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 AZD6244 0.236651115170075 -0.0867922772123897 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G AZD6244 0.0333132543869961 0.131368776362723 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 AZD6244 0.108855335206987 -0.123364488140062 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 AZD6244 0.145970568140396 0.108982289944993 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 AZD6244 0.0383295470355595 0.160015192146341 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR AZD6244 0.0153804475539966 -0.239952951188438 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH AZD6244 0.0111595325691176 0.191325629751031 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 AZD6244 0.0261619581537084 0.189297280732045 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 AZD6244 0.0261619581537084 0.189297280732045 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 AZD6244 0.167530573251916 0.105517004173796 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 AZD6244 0.121622104381389 -0.185904636878307 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 AZD6244 0.136695600799589 -0.17003652531036 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 AZD6244 0.0340143123959895 -0.205317846253128 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 AZD6244 0.0340143123959895 -0.205317846253128 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 AZD6244 0.0137763052904641 -0.224387484458348 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 AZD6244 0.00327842306330323 -0.243771912194611 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 AZD6244 0.000587409535267406 -0.243860715681544 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 AZD6244 0.000587409535267406 -0.243860715681544 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 AZD6244 0.00089406716093641 -0.239138912494271 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 AZD6244 0.00108424210130554 -0.241424607783547 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL AZD6244 0.00256035388436814 -0.22670867006239 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 AZD6244 0.0020296861380958 -0.239246690959952 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 AZD6244 0.00297246507033241 -0.22903342181789 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P AZD6244 0.128043566673348 0.160681165208004 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM AZD6244 0.0156533699216868 -0.240668607354349 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 AZD6244 0.572588134826103 -0.0759762689411611 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B AZD6244 0.486776691813659 -0.0863981705696097 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B AZD6244 0.583529082830453 -0.0759575651870683 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 AZD6244 0.541784028001671 -0.0787769178324931 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 AZD6244 0.427459892075065 0.131296140689643 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 AZD6244 0.320843622620761 0.153118334735942 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 AZD6244 0.0594362216059433 -0.137268939435383 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A AZD6244 0.075586654964495 0.101577726424725 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 AZD6244 0.0948495047704849 -0.125770730503898 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA AZD6244 0.0594362216059433 -0.137268939435383 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR AZD6244 0.0750132699291417 0.126455398798335 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 AZD6244 0.156156740627615 0.111818919200891 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT AZD6244 0.0343143179193231 -0.193212893902185 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 AZD6244 0.0123295153185813 0.185778799109231 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 AZD6244 0.0123295153185813 0.185778799109231 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS AZD6244 0.0111595325691176 0.191325629751031 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A AZD6244 0.0192245020154629 0.188556526219615 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 AZD6244 0.0192245020154629 0.188556526219615 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC AZD6244 0.132602894891094 -0.176088789242261 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE AZD6244 0.132602894891094 -0.176088789242261 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 AZD6244 0.132602894891094 -0.176088789242261 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS AZD6244 0.0340143123959895 -0.205317846253128 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 AZD6244 0.0137763052904641 -0.224387484458348 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A AZD6244 0.0137763052904641 -0.224387484458348 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C AZD6244 0.0137763052904641 -0.224387484458348 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 AZD6244 0.00815092313321029 -0.231129554765747 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 AZD6244 0.00815092313321029 -0.231129554765747 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 AZD6244 0.00815092313321029 -0.231129554765747 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 AZD6244 0.00108194770302417 -0.239653607532931 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 AZD6244 0.000587409535267406 -0.243860715681544 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 AZD6244 0.000587409535267406 -0.243860715681544 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B AZD6244 0.00158377298487646 -0.232561168069622 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM AZD6244 0.00256035388436814 -0.22670867006239 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 AZD6244 0.0156533699216868 -0.240668607354349 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 AZD6244 0.0156533699216868 -0.240668607354349 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 AZD6244 0.583529082830453 -0.0759575651870683 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Erlotinib 0.35064737934698 -0.0175642774384431 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Erlotinib 0.277932082509894 -0.0197282274990175 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Erlotinib 0.321262856050994 -0.0172951934036103 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Erlotinib 0.519941389886966 0.00340273963806048 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Erlotinib 0.247776206559638 -0.017808397331576 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Erlotinib 0.693480612225321 0.00301889095637287 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Erlotinib 0.37394413104448 0.0148320884482752 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Erlotinib 0.042679898247179 -0.0389007253764954 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Erlotinib 0.137195694769269 0.0249309366989617 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Erlotinib 0.0704878328016675 0.0364421610740326 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Erlotinib 0.0704878328016675 0.0364421610740326 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Erlotinib 0.111660912288222 0.0364621617809756 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Erlotinib 0.516063620763066 0.0158062086275543 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Erlotinib 0.467572256358555 0.0155112984583318 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Erlotinib 0.742508747695595 0.00576050623452967 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Erlotinib 0.742508747695595 0.00576050623452967 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Erlotinib 0.790097543903588 0.00481825464304209 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Erlotinib 0.646068809554389 -0.00733080341424203 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Erlotinib 0.957619828341477 -0.00063675771306948 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Erlotinib 0.957619828341477 -0.00063675771306948 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Erlotinib 0.947977704662806 0.00119277329230122 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Erlotinib 0.758714054461321 0.00453962580695744 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Erlotinib 0.521737986536567 0.00817141544561012 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Erlotinib 0.592617201077854 0.00821345951874924 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Erlotinib 0.584730945059464 0.0077450713688198 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Erlotinib 0.0853736768547514 0.045213025343103 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Erlotinib 0.00311884827096947 -0.0571980076601106 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Erlotinib 0.656339371044116 0.00404448586103223 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Erlotinib 0.899065370209725 -0.000983276758000362 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Erlotinib 0.837520715667373 -0.00623690856099884 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Erlotinib 0.656339371044116 0.00433675576467285 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Erlotinib 0.776565493542251 -0.00832136296559405 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Erlotinib 0.789660897097919 -0.0058407993755733 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Erlotinib 0.135187032709269 -0.0216965349489038 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Erlotinib 0.94382176642395 -0.00780232015542637 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Erlotinib 0.197315101315427 -0.0193308371723009 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Erlotinib 0.135187032709269 -0.0216965349489038 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Erlotinib 0.63365062550197 0.00418415998723437 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Erlotinib 0.531147208912476 0.00661562584899039 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Erlotinib 0.219815099744694 -0.0210488487635746 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Erlotinib 0.226379737647724 0.019252936723626 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Erlotinib 0.226379737647724 0.019252936723626 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Erlotinib 0.137195694769269 0.0249309366989617 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Erlotinib 0.143857917526037 0.0279766952772263 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Erlotinib 0.143857917526037 0.0279766952772263 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Erlotinib 0.420837969653689 0.0168609368312941 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Erlotinib 0.420837969653689 0.0168609368312941 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Erlotinib 0.420837969653689 0.0168609368312941 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Erlotinib 0.742508747695595 0.00576050623452967 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Erlotinib 0.790097543903588 0.00481825464304209 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Erlotinib 0.790097543903588 0.00481825464304209 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Erlotinib 0.790097543903588 0.00481825464304209 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Erlotinib 0.96097108171834 0.000261012413776074 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Erlotinib 0.96097108171834 0.000261012413776074 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Erlotinib 0.96097108171834 0.000261012413776074 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Erlotinib 0.820046358044322 0.00288317172901825 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Erlotinib 0.957619828341477 -0.00063675771306948 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Erlotinib 0.957619828341477 -0.00063675771306948 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Erlotinib 0.749247830904578 0.004238043764906 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Erlotinib 0.521737986536567 0.00817141544561012 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Erlotinib 0.00311884827096947 -0.0571980076601106 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Erlotinib 0.00311884827096947 -0.0571980076601106 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Erlotinib 0.837520715667373 -0.00623690856099884 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Irinotecan 0.154904995968631 0.141349854040954 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Irinotecan 0.539931536050319 0.0639675072897967 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Irinotecan 0.994542148534568 0.00834619510060719 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Irinotecan 0.738310407225875 -0.0841047216994171 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Irinotecan 0.943786926474984 0.0123039894867523 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Irinotecan 0.43958416502688 -0.131893324233822 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Irinotecan 0.888608025701744 -0.0587345531054377 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Irinotecan 0.694747913739357 0.0515839223833803 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Irinotecan 0.913215509575186 -0.033198550288835 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Irinotecan 0.642639561103969 0.00650497925188276 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Irinotecan 0.642639561103969 0.00650497925188276 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Irinotecan 0.989790023440928 -0.0420342454471085 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Irinotecan 0.179019843810046 0.188162001733522 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Irinotecan 0.0890838868040964 0.214579197371515 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Irinotecan 0.0296125973235878 0.219867260666869 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Irinotecan 0.0296125973235878 0.219867260666869 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Irinotecan 0.0178507162234298 0.223041870589548 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Irinotecan 0.0336751579510406 0.196304101030738 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Irinotecan 0.25034303877312 0.10657493250724 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Irinotecan 0.25034303877312 0.10657493250724 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Irinotecan 0.418808696744295 0.0837982941521167 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Irinotecan 0.243111191329583 0.109199581062175 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Irinotecan 0.350710823248869 0.0939097808685552 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Irinotecan 0.0826004872338588 0.155529698844791 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Irinotecan 0.170437931869039 0.129408266307868 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Irinotecan 0.692296017822833 -0.0974722264903805 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Irinotecan 0.251746860495232 -0.0824750830158014 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Irinotecan 0.676350195342477 0.0365085358951172 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Irinotecan 0.989530780745167 0.00146525958443666 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Irinotecan 0.863763274051121 -0.0133049667691219 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Irinotecan 0.683072479140494 0.0357464113252304 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Irinotecan 0.376713351239226 -0.130950626527643 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Irinotecan 0.200457050089976 -0.17751156359714 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Irinotecan 0.851860931087745 0.0157140504565341 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Irinotecan 0.505210451880685 0.0246212347773938 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Irinotecan 0.917001917875577 0.0125209398042982 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Irinotecan 0.851860931087745 0.0157140504565341 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Irinotecan 0.337726087166169 -0.140568216765012 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Irinotecan 0.656390932450006 -0.10365515314535 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Irinotecan 0.9068455917595 0.00166871597409601 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Irinotecan 0.743740242691428 -0.0726932324130232 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Irinotecan 0.743740242691428 -0.0726932324130232 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Irinotecan 0.913215509575186 -0.033198550288835 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Irinotecan 0.974645840005818 -0.032916946425305 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Irinotecan 0.974645840005818 -0.032916946425305 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Irinotecan 0.0778875167613177 0.220257759929559 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Irinotecan 0.0778875167613177 0.220257759929559 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Irinotecan 0.0778875167613177 0.220257759929559 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Irinotecan 0.0296125973235878 0.219867260666869 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Irinotecan 0.0178507162234298 0.223041870589548 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Irinotecan 0.0178507162234298 0.223041870589548 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Irinotecan 0.0178507162234298 0.223041870589548 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Irinotecan 0.0245922310283394 0.209433631020532 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Irinotecan 0.0245922310283394 0.209433631020532 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Irinotecan 0.0245922310283394 0.209433631020532 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Irinotecan 0.0977728996691265 0.14193817890194 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Irinotecan 0.25034303877312 0.10657493250724 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Irinotecan 0.25034303877312 0.10657493250724 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Irinotecan 0.405299873314251 0.0873952516932102 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Irinotecan 0.350710823248869 0.0939097808685552 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Irinotecan 0.251746860495232 -0.0824750830158014 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Irinotecan 0.251746860495232 -0.0824750830158014 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Irinotecan 0.863763274051121 -0.0133049667691219 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 L.685458 0.867288592530764 0.00147578992246422 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 L.685458 0.453275072254047 -0.0153490227511408 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 L.685458 0.443598333215526 -0.0153709010312889 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G L.685458 0.738310407225875 -0.00407458066531741 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 L.685458 0.591615162585185 -0.0124146635833217 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 L.685458 0.882547409832956 -0.0129911922169658 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 L.685458 0.264752479940498 0.0156994101013548 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR L.685458 0.41150382745253 -0.0204242488869281 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH L.685458 0.107854837755705 0.0281728041766508 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 L.685458 0.168239039684721 0.0368868777958211 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 L.685458 0.168239039684721 0.0368868777958211 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 L.685458 0.361923687271526 0.0274956714006549 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 L.685458 0.469713697589213 0.0284242489049527 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 L.685458 0.320491343828135 0.0316728543379647 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 L.685458 0.324330027206712 0.0241175520059586 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 L.685458 0.324330027206712 0.0241175520059586 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 L.685458 0.279437914053953 0.0237230021124912 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 L.685458 0.385703728151579 0.0179083440363663 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 L.685458 0.730834323070256 0.0067534447222819 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 L.685458 0.730834323070256 0.0067534447222819 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 L.685458 0.619583245910712 0.00885730244024396 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 L.685458 0.344703231086718 0.0159274087706004 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL L.685458 0.654448813376326 0.00972433819048313 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 L.685458 0.26811094423573 0.0210422638848838 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 L.685458 0.476867669972517 0.0145392463350066 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P L.685458 0.24475894749539 0.0400952315967921 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM L.685458 0.205240909619895 -0.030207669096622 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 L.685458 0.268920859040998 0.0107517743572006 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B L.685458 0.497803916173491 0.0031396198907363 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B L.685458 0.589288682811266 0.000742990318133629 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 L.685458 0.276947671714675 0.0102100201748354 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 L.685458 0.869522081271565 -0.0183873906622704 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 L.685458 0.887721460909971 -0.0165224947099286 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 L.685458 0.441109363160315 -0.0155306885955262 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A L.685458 0.546194893613366 0.00201602832178449 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 L.685458 0.533752218321863 -0.0135370085921148 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA L.685458 0.441109363160315 -0.0155306885955262 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR L.685458 0.76318908226327 -0.0166806167229339 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 L.685458 0.850545282315076 -0.00362262776990852 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT L.685458 0.472247895227046 -0.0170505204882864 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 L.685458 0.161704865900948 0.0194778111312138 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 L.685458 0.161704865900948 0.0194778111312138 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS L.685458 0.107854837755705 0.0281728041766508 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A L.685458 0.212836643515946 0.0302189224536976 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 L.685458 0.212836643515946 0.0302189224536976 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC L.685458 0.28372803499762 0.0332743929174845 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE L.685458 0.28372803499762 0.0332743929174845 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 L.685458 0.28372803499762 0.0332743929174845 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS L.685458 0.324330027206712 0.0241175520059586 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 L.685458 0.279437914053953 0.0237230021124912 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A L.685458 0.279437914053953 0.0237230021124912 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C L.685458 0.279437914053953 0.0237230021124912 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 L.685458 0.221187918735616 0.0238783291858971 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 L.685458 0.221187918735616 0.0238783291858971 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 L.685458 0.221187918735616 0.0238783291858971 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 L.685458 0.634696002974181 0.00971501082664306 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 L.685458 0.730834323070256 0.0067534447222819 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 L.685458 0.730834323070256 0.0067534447222819 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B L.685458 0.566622538348033 0.0102555763938881 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM L.685458 0.654448813376326 0.00972433819048313 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 L.685458 0.205240909619895 -0.030207669096622 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 L.685458 0.205240909619895 -0.030207669096622 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 L.685458 0.589288682811266 0.000742990318133629 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Lapatinib 0.69259014864603 -0.013625467370362 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Lapatinib 0.9241771188716 -0.00042962609235031 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Lapatinib 0.691554455499132 -0.014398404562585 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Lapatinib 0.147692451524527 0.0373881064513792 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Lapatinib 0.775560027674127 -0.0110958977195256 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Lapatinib 0.132537060797425 0.0379745129275275 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Lapatinib 0.0578174996915159 0.0467627610643451 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Lapatinib 0.384411406656681 -0.0316699922021998 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Lapatinib 0.00988271242140729 0.0629179357947801 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Lapatinib 0.130208633255952 0.0421616260935217 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Lapatinib 0.130208633255952 0.0421616260935217 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Lapatinib 0.252151354486274 0.0408253589231984 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Lapatinib 0.495175331461776 -0.0283584128057803 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Lapatinib 0.309149272921361 -0.0351647509256146 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Lapatinib 0.241059038884539 -0.034696210377009 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Lapatinib 0.241059038884539 -0.034696210377009 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Lapatinib 0.206398267800251 -0.0351769407414608 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Lapatinib 0.0487395164855956 -0.050291696099121 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Lapatinib 0.131678224937724 -0.0339809296007526 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Lapatinib 0.131678224937724 -0.0339809296007526 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Lapatinib 0.210922974867019 -0.0301099092811265 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Lapatinib 0.207359541640609 -0.0315300532530142 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Lapatinib 0.572340741116972 -0.0162833239403458 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Lapatinib 0.640778249039265 -0.0158889126588102 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Lapatinib 0.900386519060425 -0.0081549984233536 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Lapatinib 0.475408985895354 0.038286598793129 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Lapatinib 0.073526175291106 -0.0615285800761662 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Lapatinib 0.145893736535712 0.0587327216423182 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Lapatinib 0.225680550659232 0.0501327851353369 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Lapatinib 0.355023851182722 0.0410509450986827 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Lapatinib 0.143367711501049 0.0590795830420824 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Lapatinib 0.686627712026555 -0.0156234497355592 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Lapatinib 0.937483769184352 -0.00799589171535264 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Lapatinib 0.944170415928806 -0.00694123725613954 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Lapatinib 0.105981671422656 0.0438964063825359 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Lapatinib 0.935926022154991 -0.00716280491199439 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Lapatinib 0.944170415928806 -0.00694123725613954 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Lapatinib 0.427006363926448 0.0203580851353926 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Lapatinib 0.0711727073510598 0.043432198550935 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Lapatinib 0.802004778250043 -0.00808801332989412 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Lapatinib 0.00825056884871083 0.0615513845058914 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Lapatinib 0.00825056884871083 0.0615513845058914 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Lapatinib 0.00988271242140729 0.0629179357947801 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Lapatinib 0.0423864303847196 0.05033441618547 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Lapatinib 0.0423864303847196 0.05033441618547 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Lapatinib 0.332102002385855 -0.0337874248037775 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Lapatinib 0.332102002385855 -0.0337874248037775 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Lapatinib 0.332102002385855 -0.0337874248037775 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Lapatinib 0.241059038884539 -0.034696210377009 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Lapatinib 0.206398267800251 -0.0351769407414608 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Lapatinib 0.206398267800251 -0.0351769407414608 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Lapatinib 0.206398267800251 -0.0351769407414608 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Lapatinib 0.102168674917782 -0.0436850856659758 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Lapatinib 0.102168674917782 -0.0436850856659758 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Lapatinib 0.102168674917782 -0.0436850856659758 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Lapatinib 0.225399340465369 -0.0290321844901887 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Lapatinib 0.131678224937724 -0.0339809296007526 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Lapatinib 0.131678224937724 -0.0339809296007526 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Lapatinib 0.355309731365194 -0.0240707898146238 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Lapatinib 0.572340741116972 -0.0162833239403458 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Lapatinib 0.073526175291106 -0.0615285800761662 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Lapatinib 0.073526175291106 -0.0615285800761662 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Lapatinib 0.355023851182722 0.0410509450986827 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 LBW242 0.98374145183631 -0.00997554519379173 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 LBW242 0.62875443390121 -0.0222454240187536 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 LBW242 0.419566370767311 -0.0278016536478329 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G LBW242 0.137583102536314 0.0324194858608307 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 LBW242 0.803885717505372 -0.013724443208066 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 LBW242 0.228742286126221 0.0304623554302624 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 LBW242 0.111855404802306 0.0456169778985741 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR LBW242 0.449336872454825 -0.0320273414563413 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH LBW242 0.126811116972228 0.0458305304636385 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 LBW242 0.308072054537912 0.0325209281525721 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 LBW242 0.308072054537912 0.0325209281525721 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 LBW242 0.375697262361595 0.0330421900115292 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 LBW242 0.142563280126594 -0.0452269600497073 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 LBW242 0.0765722975529248 -0.0526107752053665 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 LBW242 0.047527127290885 -0.053265591839482 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 LBW242 0.047527127290885 -0.053265591839482 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 LBW242 0.0457096865098417 -0.0524402237698617 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 LBW242 0.0143162733259299 -0.0598928412557345 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 LBW242 0.00477178573408546 -0.0616493761058968 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 LBW242 0.00477178573408546 -0.0616493761058968 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 LBW242 0.00785855110297654 -0.0596050428218375 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 LBW242 0.0297357351560918 -0.0508939667565605 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL LBW242 0.0223269643601737 -0.054432869250721 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 LBW242 0.0406711730279861 -0.0517248035072323 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 LBW242 0.0195148782934312 -0.0576450347687315 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P LBW242 0.0467200048744041 0.0782614937252399 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM LBW242 0.248434724354875 -0.0355566171029983 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 LBW242 0.0940554709322109 0.0491989600402533 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B LBW242 0.0428571166458175 0.0613249561323833 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B LBW242 0.0712717553037748 0.0530143383289335 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 LBW242 0.0940554709322109 0.049092994067008 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 LBW242 0.344987956993798 0.0369152207758832 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 LBW242 0.249267566329661 0.044478506825042 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 LBW242 0.603493504797003 -0.0182990923974673 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A LBW242 0.689538729970999 0.00956768230260663 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 LBW242 0.718643543852788 -0.0156113347383109 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA LBW242 0.603493504797003 -0.0182990923974673 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR LBW242 0.179552219314147 0.0327991341686467 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 LBW242 0.12705775919894 0.0378301929263097 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT LBW242 0.705577853370893 -0.0167319298188016 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 LBW242 0.120729683228252 0.0455631905638667 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 LBW242 0.120729683228252 0.0455631905638667 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS LBW242 0.126811116972228 0.0458305304636385 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A LBW242 0.205039258328767 0.0366201242213763 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 LBW242 0.205039258328767 0.0366201242213763 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC LBW242 0.0778875167613177 -0.0523001397003782 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE LBW242 0.0778875167613177 -0.0523001397003782 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 LBW242 0.0778875167613177 -0.0523001397003782 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS LBW242 0.047527127290885 -0.053265591839482 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 LBW242 0.0457096865098417 -0.0524402237698617 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A LBW242 0.0457096865098417 -0.0524402237698617 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C LBW242 0.0457096865098417 -0.0524402237698617 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 LBW242 0.0300483485442282 -0.0543853665754589 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 LBW242 0.0300483485442282 -0.0543853665754589 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 LBW242 0.0300483485442282 -0.0543853665754589 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 LBW242 0.00216412134608458 -0.0684367214974614 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 LBW242 0.00477178573408546 -0.0616493761058968 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 LBW242 0.00477178573408546 -0.0616493761058968 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B LBW242 0.0142655281053728 -0.0563808681109935 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM LBW242 0.0223269643601737 -0.054432869250721 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 LBW242 0.248434724354875 -0.0355566171029983 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 LBW242 0.248434724354875 -0.0355566171029983 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 LBW242 0.0712717553037748 0.0530143383289335 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Nilotinib 0.490953806747571 -0.0335703349721549 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Nilotinib 0.24559507196749 -0.0486558441736442 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Nilotinib 0.355766741530059 -0.0399827829931295 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Nilotinib 0.603274005178204 0.0262789542029298 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Nilotinib 0.337275164842261 -0.0384185428321417 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Nilotinib 0.973810804007496 0.00864474737462906 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Nilotinib 0.30730202662603 0.0518815599580075 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Nilotinib 0.165249902616607 -0.0651929882256388 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Nilotinib 0.0992415141391603 0.0841281520168087 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Nilotinib 0.258054849879729 0.0679381671621988 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Nilotinib 0.258054849879729 0.0679381671621988 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Nilotinib 0.449170202491826 0.0601268667865102 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Nilotinib 0.570213943791788 -0.0233746534444275 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Nilotinib 0.697467903830311 -0.0177502456815452 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Nilotinib 0.660519046294608 -0.0235139789837415 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Nilotinib 0.660519046294608 -0.0235139789837415 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Nilotinib 0.673625739587706 -0.0226116260809143 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Nilotinib 0.30147843911135 -0.0448393777819813 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Nilotinib 0.0785374627059192 -0.0616618864647082 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Nilotinib 0.0785374627059192 -0.0616618864647082 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Nilotinib 0.0892726718784728 -0.0612342367598052 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Nilotinib 0.192979534392506 -0.0515004933649682 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Nilotinib 0.18900879489939 -0.0517507015711995 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Nilotinib 0.418634615171054 -0.0385617754645734 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Nilotinib 0.315167667193587 -0.0437736142330336 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Nilotinib 0.105058443867991 0.115819926832313 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Nilotinib 0.0889282476689068 -0.0821139745416735 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Nilotinib 0.249557596436248 0.0382813767409493 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Nilotinib 0.329375744844504 0.0302341085323994 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Nilotinib 0.32537182446309 0.0293217298101658 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Nilotinib 0.26105523485581 0.0373904935786999 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Nilotinib 0.822740856064914 -0.0097115612216192 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Nilotinib 0.887721460909971 -0.00713620528598624 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Nilotinib 0.211718433927338 -0.045268874979182 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Nilotinib 0.771999496401999 0.016974925204736 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Nilotinib 0.30431568143436 -0.0392679846493833 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Nilotinib 0.211718433927338 -0.045268874979182 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Nilotinib 0.98688791087187 0.00686228198511796 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Nilotinib 0.711811648681579 0.0232586353933869 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Nilotinib 0.330591492957523 -0.0416215892723057 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Nilotinib 0.173397885604543 0.067917212448897 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Nilotinib 0.173397885604543 0.067917212448897 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Nilotinib 0.0992415141391603 0.0841281520168087 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Nilotinib 0.220841546005848 0.0689367066837347 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Nilotinib 0.220841546005848 0.0689367066837347 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Nilotinib 0.732636360450599 -0.0156035140942391 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Nilotinib 0.732636360450599 -0.0156035140942391 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Nilotinib 0.732636360450599 -0.0156035140942391 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Nilotinib 0.660519046294608 -0.0235139789837415 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Nilotinib 0.673625739587706 -0.0226116260809143 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Nilotinib 0.673625739587706 -0.0226116260809143 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Nilotinib 0.673625739587706 -0.0226116260809143 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Nilotinib 0.524675245232258 -0.0292273150689643 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Nilotinib 0.524675245232258 -0.0292273150689643 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Nilotinib 0.524675245232258 -0.0292273150689643 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Nilotinib 0.106216751846206 -0.0581610343253094 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Nilotinib 0.0785374627059192 -0.0616618864647082 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Nilotinib 0.0785374627059192 -0.0616618864647082 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Nilotinib 0.138081284074089 -0.0558756067797911 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Nilotinib 0.18900879489939 -0.0517507015711995 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Nilotinib 0.0889282476689068 -0.0821139745416735 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Nilotinib 0.0889282476689068 -0.0821139745416735 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Nilotinib 0.32537182446309 0.0293217298101658 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Nutlin.3 0.532902498316399 -0.0110967089196506 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Nutlin.3 0.591421089931292 -0.00894469627764294 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Nutlin.3 0.533625322521887 -0.0114662196979257 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Nutlin.3 0.0727819139638301 0.0237326135290931 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Nutlin.3 0.356124624925725 -0.0148047673759214 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Nutlin.3 0.101304994997239 0.0275158062921009 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Nutlin.3 0.0316241845776414 0.0356176935812171 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Nutlin.3 0.175333162601998 -0.0249606427639852 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Nutlin.3 0.0158877376002858 0.0408859005203401 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Nutlin.3 0.0818077684635074 0.0359859726554042 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Nutlin.3 0.0818077684635074 0.0359859726554042 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Nutlin.3 0.418872333764137 0.0248697131489303 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Nutlin.3 0.0756128141081812 -0.0336494073814773 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Nutlin.3 0.0528860005350662 -0.0344108699886924 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Nutlin.3 0.0290984400637815 -0.0347169251983517 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Nutlin.3 0.0290984400637815 -0.0347169251983517 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Nutlin.3 0.0156975765574334 -0.0366610341658044 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Nutlin.3 0.00255384319626522 -0.0426119707716645 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Nutlin.3 0.000995042935590008 -0.0397261254011351 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Nutlin.3 0.000995042935590008 -0.0397261254011351 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Nutlin.3 0.000841045150394871 -0.040887856583251 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Nutlin.3 0.00266092822693336 -0.0386347718747108 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Nutlin.3 0.00395729200570811 -0.0371195548729126 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Nutlin.3 0.00282366150180944 -0.0405863339940425 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Nutlin.3 0.00206667742822037 -0.0406307947049227 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Nutlin.3 0.091586830775885 0.0445094725620189 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Nutlin.3 0.0603780413176831 -0.034855504496861 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Nutlin.3 0.703388786884955 0.00282091951082397 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Nutlin.3 0.742881475069388 0.00196574166590779 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Nutlin.3 0.595074367465064 0.00439531204102706 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Nutlin.3 0.751602472208122 0.00219416078668844 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Nutlin.3 0.127615571435709 0.0309814969663761 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Nutlin.3 0.132076653728162 0.0318351601917194 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Nutlin.3 0.173914211356381 -0.0192167782373656 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Nutlin.3 0.194356357565001 0.0198296396885587 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Nutlin.3 0.279778626512349 -0.0162919566515408 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Nutlin.3 0.173914211356381 -0.0192167782373656 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Nutlin.3 0.0368739525893817 0.0299364717770093 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Nutlin.3 0.0518151543811545 0.0323130678490653 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Nutlin.3 0.237915656388488 -0.0175506352871083 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Nutlin.3 0.0190379382123555 0.038228138614336 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Nutlin.3 0.0190379382123555 0.038228138614336 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Nutlin.3 0.0158877376002858 0.0408859005203401 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Nutlin.3 0.0495848011609207 0.0369562709706005 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Nutlin.3 0.0495848011609207 0.0369562709706005 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Nutlin.3 0.0538554671235712 -0.0342251900126458 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Nutlin.3 0.0538554671235712 -0.0342251900126458 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Nutlin.3 0.0538554671235712 -0.0342251900126458 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Nutlin.3 0.0290984400637815 -0.0347169251983517 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Nutlin.3 0.0156975765574334 -0.0366610341658044 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Nutlin.3 0.0156975765574334 -0.0366610341658044 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Nutlin.3 0.0156975765574334 -0.0366610341658044 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Nutlin.3 0.00697677772016983 -0.0389475204264099 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Nutlin.3 0.00697677772016983 -0.0389475204264099 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Nutlin.3 0.00697677772016983 -0.0389475204264099 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Nutlin.3 0.000715722038636673 -0.0416737433026034 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Nutlin.3 0.000995042935590008 -0.0397261254011351 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Nutlin.3 0.000995042935590008 -0.0397261254011351 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Nutlin.3 0.00192681017262217 -0.0388220851022237 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Nutlin.3 0.00395729200570811 -0.0371195548729126 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Nutlin.3 0.0603780413176831 -0.034855504496861 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Nutlin.3 0.0603780413176831 -0.034855504496861 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Nutlin.3 0.595074367465064 0.00439531204102706 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Paclitaxel 0.753651243182488 -0.020299103673624 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Paclitaxel 0.481256573709855 -0.0444051028540624 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Paclitaxel 0.498275820363392 -0.0402375864588462 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Paclitaxel 0.638209954629023 0.0499612670239609 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Paclitaxel 0.678970008331985 -0.0179515260526637 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Paclitaxel 0.882547409832956 0.0580179959298972 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Paclitaxel 0.30730202662603 0.0962592033044354 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Paclitaxel 0.630216270269792 -0.0320576892763569 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Paclitaxel 0.220859436825375 0.109512776302181 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Paclitaxel 0.190063917551982 0.110402490387478 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Paclitaxel 0.190063917551982 0.110402490387478 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Paclitaxel 0.51324890668657 0.0754436217530552 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Paclitaxel 0.209870542862951 -0.0909199122644377 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Paclitaxel 0.20189569080882 -0.0878695723304572 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Paclitaxel 0.074913378240612 -0.106897924709235 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Paclitaxel 0.074913378240612 -0.106897924709235 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Paclitaxel 0.0457096865098417 -0.114689115879342 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Paclitaxel 0.0315985214089896 -0.118572823256974 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Paclitaxel 0.00511542115047509 -0.139069842243229 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Paclitaxel 0.00511542115047509 -0.139069842243229 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Paclitaxel 0.00913327222775232 -0.132865776478845 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Paclitaxel 0.00783232632322334 -0.139841720742719 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Paclitaxel 0.00418336402822805 -0.149593731403072 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Paclitaxel 0.0308615465098391 -0.104957502184805 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Paclitaxel 0.0204912766315631 -0.11044955230197 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Paclitaxel 0.669043171489991 0.0683256474459464 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Paclitaxel 0.592750494657871 -0.0441596540023976 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Paclitaxel 0.0545932717031327 -0.161128157996536 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Paclitaxel 0.0456238701989786 -0.154883865185486 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Paclitaxel 0.141848864417786 -0.0983995609106847 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Paclitaxel 0.048024968044525 -0.16838184963864 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Paclitaxel 0.799567780690115 0.0533264533362843 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Paclitaxel 0.648871554273635 0.0685011622262177 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Paclitaxel 0.687192538043514 -0.0182017625413415 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Paclitaxel 0.820353995676306 0.0338443470943099 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Paclitaxel 0.522073015436871 -0.0305961807225881 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Paclitaxel 0.687192538043514 -0.0182017625413415 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Paclitaxel 0.535899532569815 0.0676750155365271 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Paclitaxel 0.521272940568563 0.0910499934768394 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Paclitaxel 0.40512606652378 -0.0462681524832416 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Paclitaxel 0.256746138416973 0.102678814228078 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Paclitaxel 0.256746138416973 0.102678814228078 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Paclitaxel 0.220859436825375 0.109512776302181 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Paclitaxel 0.081126178381269 0.137056116996971 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Paclitaxel 0.081126178381269 0.137056116996971 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Paclitaxel 0.207502543581835 -0.0868387860795217 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Paclitaxel 0.207502543581835 -0.0868387860795217 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Paclitaxel 0.207502543581835 -0.0868387860795217 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Paclitaxel 0.074913378240612 -0.106897924709235 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Paclitaxel 0.0457096865098417 -0.114689115879342 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Paclitaxel 0.0457096865098417 -0.114689115879342 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Paclitaxel 0.0457096865098417 -0.114689115879342 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Paclitaxel 0.04916157143783 -0.112455390635846 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Paclitaxel 0.04916157143783 -0.112455390635846 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Paclitaxel 0.04916157143783 -0.112455390635846 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Paclitaxel 0.00448136190696599 -0.139325990726784 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Paclitaxel 0.00511542115047509 -0.139069842243229 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Paclitaxel 0.00511542115047509 -0.139069842243229 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Paclitaxel 0.00508162787598229 -0.143749254200019 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Paclitaxel 0.00418336402822805 -0.149593731403072 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Paclitaxel 0.592750494657871 -0.0441596540023976 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Paclitaxel 0.592750494657871 -0.0441596540023976 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Paclitaxel 0.141848864417786 -0.0983995609106847 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Panobinostat 0.485837859209432 0.0298542537990274 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Panobinostat 0.354921596116013 -0.0337423705085449 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Panobinostat 0.106452060251527 -0.054741240742989 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Panobinostat 0.655990595887501 -0.0124053903222396 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Panobinostat 0.233043300640217 -0.0364030814843943 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Panobinostat 0.510891296471664 -0.0313556909868078 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Panobinostat 0.594265204900959 0.0288095917157438 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Panobinostat 0.53061801782313 -0.0264592943526933 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Panobinostat 0.278448955373447 0.0573408297593572 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Panobinostat 0.329728110234661 0.0595749102144421 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Panobinostat 0.329728110234661 0.0595749102144421 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Panobinostat 0.274332630150237 0.0655784565828208 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Panobinostat 0.944643058151322 0.00725170994055446 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Panobinostat 0.934280791836136 0.0116044257346131 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Panobinostat 0.572962844793496 0.0261658607605426 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Panobinostat 0.572962844793496 0.0261658607605426 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Panobinostat 0.502530185677848 0.0271653250460631 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Panobinostat 0.853254330065033 0.0104522811472121 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Panobinostat 0.680969175240909 0.013061257345055 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Panobinostat 0.680969175240909 0.013061257345055 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Panobinostat 0.813855669028919 0.00964318675983034 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Panobinostat 0.66291747225989 0.0160256621799624 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Panobinostat 0.736551020271902 0.0140571806133325 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Panobinostat 0.50560396468274 0.0237889611160407 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Panobinostat 0.6668513727418 0.0174322681482444 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Panobinostat 0.49535256406324 0.0638630768455988 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Panobinostat 0.684619400154367 -0.0186707771656591 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Panobinostat 0.630039220397006 0.0158870064678318 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Panobinostat 0.975574936830785 -0.00228892642875866 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Panobinostat 0.910034169451316 -0.00662874316455664 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Panobinostat 0.64972262878551 0.0153009641183095 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Panobinostat 0.621827960608856 -0.0352044842317092 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Panobinostat 0.49909093004166 -0.0442172529226044 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Panobinostat 0.247893160052579 -0.0354337681188621 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Panobinostat 0.89410687248752 0.0149732847647179 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Panobinostat 0.234831356422374 -0.0359340466699241 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Panobinostat 0.247893160052579 -0.0354337681188621 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Panobinostat 0.657240497590321 -0.0324877706594648 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Panobinostat 0.874244069906472 -0.00723728668637413 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Panobinostat 0.195704281922378 -0.0462070039990738 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Panobinostat 0.437531393097636 0.0373835188959273 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Panobinostat 0.437531393097636 0.0373835188959273 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Panobinostat 0.278448955373447 0.0573408297593572 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Panobinostat 0.43841329384753 0.0495092874348178 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Panobinostat 0.43841329384753 0.0495092874348178 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Panobinostat 0.88448430793671 0.0133417625391505 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Panobinostat 0.88448430793671 0.0133417625391505 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Panobinostat 0.88448430793671 0.0133417625391505 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Panobinostat 0.572962844793496 0.0261658607605426 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Panobinostat 0.502530185677848 0.0271653250460631 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Panobinostat 0.502530185677848 0.0271653250460631 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Panobinostat 0.502530185677848 0.0271653250460631 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Panobinostat 0.585884289471598 0.0222782947171192 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Panobinostat 0.585884289471598 0.0222782947171192 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Panobinostat 0.585884289471598 0.0222782947171192 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Panobinostat 0.736185737276048 0.00961063628674186 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Panobinostat 0.680969175240909 0.013061257345055 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Panobinostat 0.680969175240909 0.013061257345055 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Panobinostat 0.829013387791015 0.0105492809399221 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Panobinostat 0.736551020271902 0.0140571806133325 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Panobinostat 0.684619400154367 -0.0186707771656591 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Panobinostat 0.684619400154367 -0.0186707771656591 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Panobinostat 0.910034169451316 -0.00662874316455664 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 PD.0325901 0.0490035204860217 -0.333438224702211 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 PD.0325901 0.19951412274647 -0.18098370471264 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 PD.0325901 0.460047144856959 -0.103866350599898 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G PD.0325901 0.0108033698432392 0.199760837722026 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 PD.0325901 0.209889279268533 -0.160199944450118 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 PD.0325901 0.0944763213845022 0.160180129340981 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 PD.0325901 0.0145551282742792 0.234881768385128 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR PD.0325901 0.101326892517615 -0.296918514562103 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH PD.0325901 0.00302977067716701 0.271356229890061 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 PD.0325901 0.0312341333825468 0.236957296926773 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 PD.0325901 0.0312341333825468 0.236957296926773 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 PD.0325901 0.263084761845392 0.0948197870066688 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 PD.0325901 0.0368749214208616 -0.333631331114006 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 PD.0325901 0.034304204723369 -0.323867690577509 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 PD.0325901 0.00548686065507205 -0.367435707923002 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 PD.0325901 0.00548686065507205 -0.367435707923002 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 PD.0325901 0.00204913705477422 -0.388421930621077 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 PD.0325901 0.000533470790428655 -0.405252229822811 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 PD.0325901 0.000144138755669595 -0.39556321229887 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 PD.0325901 0.000144138755669595 -0.39556321229887 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 PD.0325901 0.000191175909650733 -0.392684022900839 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 PD.0325901 0.000174505314882678 -0.402767584002028 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL PD.0325901 0.000600194253337506 -0.37713228282523 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 PD.0325901 0.00039076532888385 -0.405415475142875 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 PD.0325901 0.000663830525967647 -0.386660142014505 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P PD.0325901 0.164306872935656 0.164050157360573 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM PD.0325901 0.0511273716523827 -0.30240103299863 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 PD.0325901 0.197382416596757 -0.18792191994568 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B PD.0325901 0.16558957530571 -0.197207870843906 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B PD.0325901 0.223284873538566 -0.176788649143258 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 PD.0325901 0.194211825400545 -0.191565225475158 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 PD.0325901 0.050080561212228 0.26528556507973 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 PD.0325901 0.0303939216508738 0.297106305712512 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 PD.0325901 0.103486941875857 -0.190000436089371 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A PD.0325901 0.0159264304633463 0.153494912262212 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 PD.0325901 0.16080117807927 -0.173124310186581 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA PD.0325901 0.103486941875857 -0.190000436089371 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR PD.0325901 0.027266925403191 0.212341826682448 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 PD.0325901 0.0899348959674149 0.170267024094459 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT PD.0325901 0.106342782799578 -0.245827546483026 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 PD.0325901 0.00420600001054261 0.266491132458602 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 PD.0325901 0.00420600001054261 0.266491132458602 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS PD.0325901 0.00302977067716701 0.271356229890061 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A PD.0325901 0.0160181352285839 0.242658526877702 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 PD.0325901 0.0160181352285839 0.242658526877702 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC PD.0325901 0.031722412344808 -0.33525065383415 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE PD.0325901 0.031722412344808 -0.33525065383415 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 PD.0325901 0.031722412344808 -0.33525065383415 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS PD.0325901 0.00548686065507205 -0.367435707923002 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 PD.0325901 0.00204913705477422 -0.388421930621077 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A PD.0325901 0.00204913705477422 -0.388421930621077 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C PD.0325901 0.00204913705477422 -0.388421930621077 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 PD.0325901 0.000928736937524261 -0.39822725904905 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 PD.0325901 0.000928736937524261 -0.39822725904905 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 PD.0325901 0.000928736937524261 -0.39822725904905 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 PD.0325901 0.000118130548926283 -0.407759287868182 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 PD.0325901 0.000144138755669595 -0.39556321229887 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 PD.0325901 0.000144138755669595 -0.39556321229887 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B PD.0325901 0.00029504884621867 -0.386611355125896 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM PD.0325901 0.000600194253337506 -0.37713228282523 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 PD.0325901 0.0511273716523827 -0.30240103299863 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 PD.0325901 0.0511273716523827 -0.30240103299863 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 PD.0325901 0.223284873538566 -0.176788649143258 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 PD.0332991 0.549088016439556 0.0126393909495688 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 PD.0332991 0.575739044917308 0.0104446411055458 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 PD.0332991 0.869596578844706 0.00314998024951962 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G PD.0332991 0.833391394821803 -0.0124624933391035 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 PD.0332991 0.934031393578742 -0.000497193072458546 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 PD.0332991 0.56523022559911 -0.0202267517938172 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 PD.0332991 0.757920048056129 0.00196744635068768 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR PD.0332991 0.932295650523105 -0.00290316841067062 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH PD.0332991 0.325239646118726 0.0160718532995963 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 PD.0332991 0.465419435422158 0.0171469882635834 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 PD.0332991 0.465419435422158 0.0171469882635834 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 PD.0332991 0.847758491064527 0.00649497394562892 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 PD.0332991 0.425761932648576 0.031363299520158 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 PD.0332991 0.253178817194804 0.0348777646867476 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 PD.0332991 0.0772012092999285 0.0368754369400031 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 PD.0332991 0.0772012092999285 0.0368754369400031 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 PD.0332991 0.0875817189420264 0.034336899951335 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 PD.0332991 0.140652963303973 0.0288366158759215 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 PD.0332991 0.187728299419547 0.0223639415290524 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 PD.0332991 0.187728299419547 0.0223639415290524 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 PD.0332991 0.2698024499197 0.0202386086178004 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 PD.0332991 0.1700554820108 0.0245956002843963 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL PD.0332991 0.190986569707087 0.0240081164080618 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 PD.0332991 0.179000278706898 0.0266652187152389 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 PD.0332991 0.239832378190703 0.0238646208333888 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P PD.0332991 0.936966256850408 0.000950273474173313 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM PD.0332991 0.926305852058853 -0.00564066187029111 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 PD.0332991 0.689819990251981 0.00207235855202004 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B PD.0332991 0.933769284353716 -0.0124569589887729 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B PD.0332991 1 -0.0109345801088609 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 PD.0332991 0.696592253273923 0.00186131804249223 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 PD.0332991 0.463338491275415 -0.0266723449647198 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 PD.0332991 0.386644523024815 -0.03151442075204 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 PD.0332991 0.930245070824908 -0.00291417457185916 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A PD.0332991 0.567277623775536 0.00470892405657319 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 PD.0332991 0.978621558247348 -0.00198180144797167 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA PD.0332991 0.930245070824908 -0.00291417457185916 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR PD.0332991 0.439870210802574 -0.0227087169784695 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 PD.0332991 0.780319908844507 -0.0136370660193429 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT PD.0332991 0.685809195885949 -0.00970968071749267 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 PD.0332991 0.555965118519078 0.00565007241587856 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 PD.0332991 0.555965118519078 0.00565007241587856 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS PD.0332991 0.325239646118726 0.0160718532995963 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A PD.0332991 0.53141807326171 0.0130630513614992 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 PD.0332991 0.53141807326171 0.0130630513614992 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC PD.0332991 0.234131919993018 0.0359217445847591 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE PD.0332991 0.234131919993018 0.0359217445847591 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 PD.0332991 0.234131919993018 0.0359217445847591 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS PD.0332991 0.0772012092999285 0.0368754369400031 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 PD.0332991 0.0875817189420264 0.034336899951335 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A PD.0332991 0.0875817189420264 0.034336899951335 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C PD.0332991 0.0875817189420264 0.034336899951335 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 PD.0332991 0.118132999173616 0.0311899140849061 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 PD.0332991 0.118132999173616 0.0311899140849061 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 PD.0332991 0.118132999173616 0.0311899140849061 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 PD.0332991 0.206184280949983 0.0231533259358453 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 PD.0332991 0.187728299419547 0.0223639415290524 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 PD.0332991 0.187728299419547 0.0223639415290524 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B PD.0332991 0.225399340465369 0.0221854107154815 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM PD.0332991 0.190986569707087 0.0240081164080618 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 PD.0332991 0.926305852058853 -0.00564066187029111 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 PD.0332991 0.926305852058853 -0.00564066187029111 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 PD.0332991 1 -0.0109345801088609 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 PF2341066 0.169594022076634 -0.052321366212329 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 PF2341066 0.519982744468415 -0.0289235559045742 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 PF2341066 0.934578748214398 -0.00930812516218671 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G PF2341066 0.00363940705463025 0.0731748972848715 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 PF2341066 0.992661887262045 -0.00827968608019503 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 PF2341066 0.0391637537123446 0.0560556189656233 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 PF2341066 0.00732799788866994 0.077346373220728 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR PF2341066 0.624478126102634 -0.022648953960542 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH PF2341066 0.0011600015228169 0.0920656077391064 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 PF2341066 0.0218039847877556 0.076943960731188 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 PF2341066 0.0218039847877556 0.076943960731188 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 PF2341066 0.0713510115509779 0.0590182590037683 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 PF2341066 0.0870113205202086 -0.0670156914583809 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 PF2341066 0.0876171437126206 -0.0656775230895428 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 PF2341066 0.0549433452097963 -0.0650023302948043 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 PF2341066 0.0549433452097963 -0.0650023302948043 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 PF2341066 0.027316282005045 -0.0708822752057975 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 PF2341066 0.0107328268881365 -0.0768398916825993 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 PF2341066 0.000706566475561446 -0.088678811249996 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 PF2341066 0.000706566475561446 -0.088678811249996 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 PF2341066 0.000591740293013442 -0.0903391982935794 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 PF2341066 0.00156481311787539 -0.0866493620906307 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL PF2341066 0.00198694335394807 -0.0848602138522104 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 PF2341066 0.00501782547857893 -0.0815047842922392 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 PF2341066 0.00369128780601187 -0.0824170424960167 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P PF2341066 0.00990814253572668 0.0905366810610326 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM PF2341066 0.405159125461182 -0.0394842802609552 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 PF2341066 0.310676222442713 -0.0365294488557509 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B PF2341066 0.403487833371211 -0.0297412316340403 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B PF2341066 0.612585014806429 -0.0198299170797268 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 PF2341066 0.302000200541134 -0.0382323278925523 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 PF2341066 0.037012656664282 0.0712145062203613 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 PF2341066 0.0359166137468827 0.0740430111588297 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 PF2341066 0.648972683206404 -0.0186722220835005 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A PF2341066 0.00324552425366899 0.0746310526477409 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 PF2341066 0.90283904789814 -0.0112726918020516 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA PF2341066 0.648972683206404 -0.0186722220835005 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR PF2341066 0.000993576311961056 0.0870903708674506 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 PF2341066 0.0149244268232965 0.0666172478705958 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT PF2341066 0.885685822081368 -0.0116380391557719 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 PF2341066 0.00232730883166405 0.0840899195183555 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 PF2341066 0.00232730883166405 0.0840899195183555 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS PF2341066 0.0011600015228169 0.0920656077391064 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A PF2341066 0.00900060962888499 0.0795096727533188 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 PF2341066 0.00900060962888499 0.0795096727533188 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC PF2341066 0.0727349422200027 -0.0671443663452365 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE PF2341066 0.0727349422200027 -0.0671443663452365 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 PF2341066 0.0727349422200027 -0.0671443663452365 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS PF2341066 0.0549433452097963 -0.0650023302948043 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 PF2341066 0.027316282005045 -0.0708822752057975 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A PF2341066 0.027316282005045 -0.0708822752057975 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C PF2341066 0.027316282005045 -0.0708822752057975 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 PF2341066 0.0150805342818073 -0.0750738840919378 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 PF2341066 0.0150805342818073 -0.0750738840919378 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 PF2341066 0.0150805342818073 -0.0750738840919378 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 PF2341066 0.000579405989226927 -0.091528013729261 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 PF2341066 0.000706566475561446 -0.088678811249996 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 PF2341066 0.000706566475561446 -0.088678811249996 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B PF2341066 0.00114989809819797 -0.0874329578513222 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM PF2341066 0.00198694335394807 -0.0848602138522104 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 PF2341066 0.405159125461182 -0.0394842802609552 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 PF2341066 0.405159125461182 -0.0394842802609552 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 PF2341066 0.612585014806429 -0.0198299170797268 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 PHA.665752 0.152553719647976 -0.0482322857890966 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 PHA.665752 0.383323987216471 -0.0310271540596678 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 PHA.665752 0.627199485008141 -0.0188029939436322 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G PHA.665752 0.0365131680648194 0.0622098248923209 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 PHA.665752 0.558179254846138 -0.0167093951911053 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 PHA.665752 0.165439451429564 0.0488727858439794 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 PHA.665752 0.0483389795590491 0.0712562791958756 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR PHA.665752 0.097998175599849 -0.0552987500291021 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH PHA.665752 0.0125775024772381 0.0890325120309594 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 PHA.665752 0.077884362686953 0.0806499321782767 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 PHA.665752 0.077884362686953 0.0806499321782767 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 PHA.665752 0.231221170844323 0.0614546268624676 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 PHA.665752 0.0964396175506836 -0.0593758221641157 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 PHA.665752 0.0890838868040964 -0.0578665452922343 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 PHA.665752 0.0340143123959895 -0.0640927981132444 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 PHA.665752 0.0340143123959895 -0.0640927981132444 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 PHA.665752 0.0191938304863151 -0.0677402209330942 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 PHA.665752 0.0028955093784277 -0.0846229846147889 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 PHA.665752 0.000692295832371814 -0.0831624103628456 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 PHA.665752 0.000692295832371814 -0.0831624103628456 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 PHA.665752 0.00156131468754146 -0.0797809709435755 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 PHA.665752 0.00450301328667361 -0.0754189974224211 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL PHA.665752 0.00623282127455012 -0.07333563409579 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 PHA.665752 0.00865308833511468 -0.0753423471317183 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 PHA.665752 0.00594580899743095 -0.0766905215464685 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P PHA.665752 0.0637435398745695 0.0981578282792903 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM PHA.665752 0.0511273716523827 -0.0731005356382449 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 PHA.665752 0.815020069184457 0.00683073530200184 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B PHA.665752 0.86455342640861 0.00488754400992997 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B PHA.665752 0.817955089081324 0.0064573258163606 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 PHA.665752 0.858011031058981 0.00568815310031789 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 PHA.665752 0.463338491275415 0.0388442900674828 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 PHA.665752 0.30557744010731 0.0486323775841595 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 PHA.665752 0.301636308816653 -0.0267657617204564 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A PHA.665752 0.223041074059863 0.0421259825468482 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 PHA.665752 0.502903848217938 -0.0176640915868609 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA PHA.665752 0.301636308816653 -0.0267657617204564 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR PHA.665752 0.061757494968104 0.0592518265112737 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 PHA.665752 0.0814649408602535 0.059095482489543 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT PHA.665752 0.379233995247955 -0.0231967245668646 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 PHA.665752 0.0153704243222821 0.0818180389029948 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 PHA.665752 0.0153704243222821 0.0818180389029948 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS PHA.665752 0.0125775024772381 0.0890325120309594 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A PHA.665752 0.0305695278058467 0.0871454513290155 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 PHA.665752 0.0305695278058467 0.0871454513290155 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC PHA.665752 0.0890838868040964 -0.0578130448241042 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE PHA.665752 0.0890838868040964 -0.0578130448241042 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 PHA.665752 0.0890838868040964 -0.0578130448241042 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS PHA.665752 0.0340143123959895 -0.0640927981132444 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 PHA.665752 0.0191938304863151 -0.0677402209330942 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A PHA.665752 0.0191938304863151 -0.0677402209330942 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C PHA.665752 0.0191938304863151 -0.0677402209330942 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 PHA.665752 0.00897171749979274 -0.0722293324812133 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 PHA.665752 0.00897171749979274 -0.0722293324812133 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 PHA.665752 0.00897171749979274 -0.0722293324812133 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 PHA.665752 0.000671982973110775 -0.0861089986747704 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 PHA.665752 0.000692295832371814 -0.0831624103628456 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 PHA.665752 0.000692295832371814 -0.0831624103628456 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B PHA.665752 0.00304588580619745 -0.0767763149704125 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM PHA.665752 0.00623282127455012 -0.07333563409579 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 PHA.665752 0.0511273716523827 -0.0731005356382449 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 PHA.665752 0.0511273716523827 -0.0731005356382449 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 PHA.665752 0.817955089081324 0.0064573258163606 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 PLX4720 0.990244438987604 -0.00334297256698857 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 PLX4720 0.810456698763725 0.00449388897222491 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 PLX4720 0.691554455499132 0.00530371889274961 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G PLX4720 0.504016605097235 0.0163488286911803 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 PLX4720 0.710675294182095 -0.0124748905306208 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 PLX4720 0.645584855226259 0.0153207011652304 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 PLX4720 0.471484515412365 0.0218250999684341 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR PLX4720 0.242335606978055 -0.0315229515622776 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH PLX4720 0.165958209287688 0.0372066726754995 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 PLX4720 0.230848673482246 0.0338260122651338 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 PLX4720 0.230848673482246 0.0338260122651338 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 PLX4720 0.691400363096115 0.0132948246711953 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 PLX4720 0.0347162399250636 -0.0656780920825292 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 PLX4720 0.0392549634421202 -0.0616000695515315 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 PLX4720 0.0271179170263182 -0.0599844697459072 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 PLX4720 0.0271179170263182 -0.0599844697459072 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 PLX4720 0.0145727056089955 -0.0621983999543884 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 PLX4720 0.00435744802634582 -0.0656917415448583 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 PLX4720 0.001560085230669 -0.0632354948825031 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 PLX4720 0.001560085230669 -0.0632354948825031 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 PLX4720 0.000499991065750961 -0.0697493066810329 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 PLX4720 0.000462235884505084 -0.0723797823734468 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL PLX4720 0.000452189237364306 -0.0723813235705209 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 PLX4720 0.00104279182776213 -0.0736726957521029 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 PLX4720 0.000567185353012044 -0.0744623902824418 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P PLX4720 0.207516834302014 0.0485100004927641 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM PLX4720 0.245153191745567 -0.0333578166198668 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 PLX4720 0.351733645158938 -0.0216958457360661 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B PLX4720 0.206213093235769 -0.028217027998673 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B PLX4720 0.151155886611994 -0.0299654652624923 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 PLX4720 0.356498764667812 -0.0216166026790828 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 PLX4720 0.329766903522469 0.0336681751401084 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 PLX4720 0.49909093004166 0.0275903646330343 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 PLX4720 0.591343213748463 -0.0157765577710388 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A PLX4720 0.993752954159772 0.00266238123705287 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 PLX4720 0.522073015436871 -0.0172893563966811 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA PLX4720 0.591343213748463 -0.0157765577710388 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR PLX4720 0.217735122279527 0.0270669273032974 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 PLX4720 0.511492253646873 0.0175873280056127 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT PLX4720 0.637343423256372 -0.0167684864426106 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 PLX4720 0.23372412290765 0.0312923888427222 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 PLX4720 0.23372412290765 0.0312923888427222 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS PLX4720 0.165958209287688 0.0372066726754995 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A PLX4720 0.212836643515946 0.0338479573359795 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 PLX4720 0.212836643515946 0.0338479573359795 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC PLX4720 0.0392549634421202 -0.0620551638624416 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE PLX4720 0.0392549634421202 -0.0620551638624416 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 PLX4720 0.0392549634421202 -0.0620551638624416 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS PLX4720 0.0271179170263182 -0.0599844697459072 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 PLX4720 0.0145727056089955 -0.0621983999543884 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A PLX4720 0.0145727056089955 -0.0621983999543884 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C PLX4720 0.0145727056089955 -0.0621983999543884 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 PLX4720 0.00897171749979274 -0.0629927443462512 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 PLX4720 0.00897171749979274 -0.0629927443462512 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 PLX4720 0.00897171749979274 -0.0629927443462512 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 PLX4720 0.00168026552977155 -0.0650183143081244 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 PLX4720 0.001560085230669 -0.0632354948825031 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 PLX4720 0.001560085230669 -0.0632354948825031 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B PLX4720 0.00025229147939422 -0.0732641383279849 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM PLX4720 0.000452189237364306 -0.0723813235705209 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 PLX4720 0.245153191745567 -0.0333578166198668 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 PLX4720 0.245153191745567 -0.0333578166198668 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 PLX4720 0.151155886611994 -0.0299654652624923 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 RAF265 0.338169421054364 -0.0461889254373562 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 RAF265 1 -0.00251086764649111 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 RAF265 0.902005578084707 -0.000169670512945475 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G RAF265 0.359845999753778 0.0241197529243198 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 RAF265 0.558179254846138 -0.0226325158672176 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 RAF265 0.331417522668073 0.0224031613744595 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 RAF265 0.0658789830889479 0.037978355950683 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR RAF265 0.362689326598914 -0.0454444510538157 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH RAF265 0.00770611896753846 0.0625308765213271 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 RAF265 0.230848673482246 0.0258041107320564 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 RAF265 0.230848673482246 0.0258041107320564 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 RAF265 0.729582611294539 -0.00238209492268848 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 RAF265 0.0137812890948066 -0.112614893701573 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 RAF265 0.00715008208477515 -0.115203276786826 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 RAF265 0.0086698547019808 -0.101625361353027 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 RAF265 0.0086698547019808 -0.101625361353027 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 RAF265 0.00341124325412957 -0.109532198804508 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 RAF265 0.000572694475059436 -0.121359230197699 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 RAF265 7.94676803787114e-06 -0.131511659778831 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 RAF265 7.94676803787114e-06 -0.131511659778831 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 RAF265 2.25677377369828e-06 -0.139958352921491 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 RAF265 4.82069512064448e-06 -0.140498665883144 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL RAF265 6.36357794892635e-06 -0.138599428188461 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 RAF265 3.91570715030058e-05 -0.133197085726007 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 RAF265 1.79101489078775e-05 -0.135837204917717 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P RAF265 0.579241203030277 0.0196940367727432 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM RAF265 0.216983546917481 -0.054917852836099 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 RAF265 0.523707065375749 -0.0263845895170332 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B RAF265 0.497803916173491 -0.0261095703583714 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B RAF265 0.766362558485109 -0.0114915392619128 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 RAF265 0.482763731929192 -0.0288803088022838 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 RAF265 0.0995307626439569 0.0583702249205214 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 RAF265 0.149510866247109 0.0550874472064096 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 RAF265 0.437656290699554 -0.0276817683618555 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A RAF265 0.211229116816096 0.0417241257486769 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 RAF265 0.430096800106302 -0.0286088371289739 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA RAF265 0.437656290699554 -0.0276817683618555 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR RAF265 0.39582240556186 0.0289502884421762 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 RAF265 0.240753301903321 0.0272597118345166 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT RAF265 0.428138718627226 -0.0386505430901534 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 RAF265 0.00649738574977836 0.0691211801917895 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 RAF265 0.00649738574977836 0.0691211801917895 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS RAF265 0.00770611896753846 0.0625308765213271 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A RAF265 0.0773889525903124 0.0413137471072125 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 RAF265 0.0773889525903124 0.0413137471072125 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC RAF265 0.0069835957141095 -0.117254487760095 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE RAF265 0.0069835957141095 -0.117254487760095 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 RAF265 0.0069835957141095 -0.117254487760095 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS RAF265 0.0086698547019808 -0.101625361353027 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 RAF265 0.00341124325412957 -0.109532198804508 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A RAF265 0.00341124325412957 -0.109532198804508 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C RAF265 0.00341124325412957 -0.109532198804508 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 RAF265 0.00125336622267123 -0.116819268783534 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 RAF265 0.00125336622267123 -0.116819268783534 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 RAF265 0.00125336622267123 -0.116819268783534 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 RAF265 1.62736029905584e-05 -0.132354971496554 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 RAF265 7.94676803787114e-06 -0.131511659778831 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 RAF265 7.94676803787114e-06 -0.131511659778831 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B RAF265 2.1703515790737e-06 -0.142846571613772 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM RAF265 6.36357794892635e-06 -0.138599428188461 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 RAF265 0.216983546917481 -0.054917852836099 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 RAF265 0.216983546917481 -0.054917852836099 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 RAF265 0.766362558485109 -0.0114915392619128 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Sorafenib 0.40342632780234 -0.0166206850734831 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Sorafenib 0.40874459877605 -0.0151474723423498 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Sorafenib 0.50262535518653 -0.0123812366130867 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Sorafenib 0.193859769343744 0.0279007881081335 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Sorafenib 0.322066582720166 -0.0176007965235574 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Sorafenib 0.56523022559911 0.0148473245740154 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Sorafenib 0.173397885604543 0.0361035021396323 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Sorafenib 0.064483215419536 -0.0442590847557267 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Sorafenib 0.053048472444234 0.0558705590504596 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Sorafenib 0.161390131069823 0.0544513610674579 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Sorafenib 0.161390131069823 0.0544513610674579 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Sorafenib 0.617366629842346 0.0310605639295874 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Sorafenib 0.187078045433744 -0.0329591499201564 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Sorafenib 0.276732477860995 -0.028334759046501 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Sorafenib 0.176320174416849 -0.0313331664809786 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Sorafenib 0.176320174416849 -0.0313331664809786 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Sorafenib 0.132033949880961 -0.03346255738601 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Sorafenib 0.03475653042179 -0.0438926286123449 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Sorafenib 0.00794880813815504 -0.0486572797747287 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Sorafenib 0.00794880813815504 -0.0486572797747287 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Sorafenib 0.00772724394542028 -0.0498612438784968 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Sorafenib 0.028867265031169 -0.0426949676901954 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Sorafenib 0.0191156707347064 -0.0461582902411483 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Sorafenib 0.0804232213823076 -0.037336185819456 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Sorafenib 0.0359570716613287 -0.0436040534984938 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Sorafenib 0.231873197867405 0.0504196034668165 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Sorafenib 0.0465222643539099 -0.0489755149983221 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Sorafenib 0.923255046909828 -0.00482287046608998 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Sorafenib 0.809894130428475 -0.00699265219113321 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Sorafenib 0.956612326083777 -0.00359296885102173 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Sorafenib 0.879673979379255 -0.00598115516442582 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Sorafenib 0.621827960608856 0.0185068814164395 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Sorafenib 0.626400976087556 0.019340200122767 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Sorafenib 0.195133922832366 -0.0229109635664116 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Sorafenib 0.241618004590717 0.0246679078952988 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Sorafenib 0.282436580747908 -0.019263309792798 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Sorafenib 0.195133922832366 -0.0229109635664116 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Sorafenib 0.213672892759529 0.0282868972795778 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Sorafenib 0.329545269314891 0.0272986434704439 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Sorafenib 0.193404222493927 -0.0271217899473132 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Sorafenib 0.0780163213843527 0.045954400072268 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Sorafenib 0.0780163213843527 0.045954400072268 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Sorafenib 0.053048472444234 0.0558705590504596 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Sorafenib 0.121560224322093 0.0535627265907825 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Sorafenib 0.121560224322093 0.0535627265907825 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Sorafenib 0.28372803499762 -0.0275885163869762 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Sorafenib 0.28372803499762 -0.0275885163869762 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Sorafenib 0.28372803499762 -0.0275885163869762 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Sorafenib 0.176320174416849 -0.0313331664809786 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Sorafenib 0.132033949880961 -0.03346255738601 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Sorafenib 0.132033949880961 -0.03346255738601 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Sorafenib 0.132033949880961 -0.03346255738601 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Sorafenib 0.0820656699634259 -0.036774382588543 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Sorafenib 0.0820656699634259 -0.036774382588543 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Sorafenib 0.0820656699634259 -0.036774382588543 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Sorafenib 0.00900768834975123 -0.0499082135401149 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Sorafenib 0.00794880813815504 -0.0486572797747287 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Sorafenib 0.00794880813815504 -0.0486572797747287 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Sorafenib 0.0119418804452922 -0.0482259545644493 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Sorafenib 0.0191156707347064 -0.0461582902411483 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Sorafenib 0.0465222643539099 -0.0489755149983221 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Sorafenib 0.0465222643539099 -0.0489755149983221 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Sorafenib 0.956612326083777 -0.00359296885102173 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 TAE684 0.784798166589447 -0.0207157763160926 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 TAE684 0.906055786063936 -0.00972960638234843 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 TAE684 0.950909965366087 -0.00849803327490717 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G TAE684 0.647075093494695 0.00420722568855192 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 TAE684 0.490331442747949 0.0104203634184139 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 TAE684 0.869606053477066 -0.0128351176889618 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 TAE684 0.161704865900948 0.0385997222077148 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR TAE684 0.855543084029216 -0.0270359544530578 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH TAE684 0.0836365871097233 0.0563517897699464 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 TAE684 0.387973407902996 0.0316105079198876 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 TAE684 0.387973407902996 0.0316105079198876 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 TAE684 0.807853493503521 0.00492623895804511 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 TAE684 0.854170695799332 -0.0132886230305309 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 TAE684 0.829013387791015 -0.0126214004887208 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 TAE684 0.370421278535386 -0.0309923654878206 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 TAE684 0.370421278535386 -0.0309923654878206 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 TAE684 0.282444555788034 -0.0351671191232947 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 TAE684 0.101172245593219 -0.0472527633917956 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 TAE684 0.0195229236840613 -0.0653347547964043 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 TAE684 0.0195229236840613 -0.0653347547964043 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 TAE684 0.0244751550161027 -0.0638956224132112 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 TAE684 0.0649002161477362 -0.0525847858181243 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL TAE684 0.0591736669440801 -0.0571048494315591 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 TAE684 0.26543159542188 -0.0326023035417717 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 TAE684 0.138684910540826 -0.0450193104448684 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P TAE684 0.96215509518216 -0.00103436504162713 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM TAE684 0.183154799769059 -0.0575534739286927 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 TAE684 0.696592253273923 -0.0050303294158236 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B TAE684 0.47048642205879 -0.0157373992480785 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B TAE684 0.577795851587535 -0.0112735803469017 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 TAE684 0.64972262878551 -0.00617184116743585 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 TAE684 0.776565493542251 0.00737553489780285 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 TAE684 0.718102228755896 0.0133399986789948 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 TAE684 0.743816929516167 -0.000814387175211762 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A TAE684 0.248041751211064 0.0322834651379955 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 TAE684 0.484113228779511 0.0100018558128436 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA TAE684 0.743816929516167 -0.000814387175211762 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR TAE684 0.943226382538329 -0.00885876351016934 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 TAE684 0.531147208912476 0.00737552584629086 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT TAE684 0.896256482479243 -0.0216865216354636 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 TAE684 0.167476126057953 0.037544910451633 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 TAE684 0.167476126057953 0.037544910451633 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS TAE684 0.0836365871097233 0.0563517897699464 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A TAE684 0.344343069449414 0.0333266737824545 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 TAE684 0.344343069449414 0.0333266737824545 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC TAE684 0.81679137843814 -0.013987325342802 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE TAE684 0.81679137843814 -0.013987325342802 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 TAE684 0.81679137843814 -0.013987325342802 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS TAE684 0.370421278535386 -0.0309923654878206 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 TAE684 0.282444555788034 -0.0351671191232947 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A TAE684 0.282444555788034 -0.0351671191232947 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C TAE684 0.282444555788034 -0.0351671191232947 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 TAE684 0.144767914390402 -0.0439271707308273 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 TAE684 0.144767914390402 -0.0439271707308273 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 TAE684 0.144767914390402 -0.0439271707308273 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 TAE684 0.03682652702991 -0.0573365968468886 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 TAE684 0.0195229236840613 -0.0653347547964043 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 TAE684 0.0195229236840613 -0.0653347547964043 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B TAE684 0.0288458260205681 -0.0632263110178473 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM TAE684 0.0591736669440801 -0.0571048494315591 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 TAE684 0.183154799769059 -0.0575534739286927 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 TAE684 0.183154799769059 -0.0575534739286927 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 TAE684 0.577795851587535 -0.0112735803469017 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 TKI258 0.143419563454348 -0.0309131525921158 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 TKI258 0.134620972010359 -0.0282424441359785 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 TKI258 0.200838878976376 -0.0237189195949108 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G TKI258 0.189648706598526 0.0302251998868548 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 TKI258 0.203279288962242 -0.0237980648977985 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 TKI258 0.56523022559911 0.0159057432570926 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 TKI258 0.135042350850284 0.0388982499984027 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR TKI258 0.0668558520451953 -0.0479021504152785 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH TKI258 0.0276026315975172 0.0641642544386173 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 TKI258 0.103830431935928 0.0530282975514672 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 TKI258 0.103830431935928 0.0530282975514672 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 TKI258 0.480642414098997 0.0274044994331255 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 TKI258 0.117738086451248 -0.040080735740282 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 TKI258 0.175512278730978 -0.034077672376485 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 TKI258 0.159277917600446 -0.032313966427276 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 TKI258 0.159277917600446 -0.032313966427276 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 TKI258 0.130313123530268 -0.0338838985433927 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 TKI258 0.0425329986830728 -0.0430814649150593 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 TKI258 0.00952243411490888 -0.0479835571353814 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 TKI258 0.00952243411490888 -0.0479835571353814 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 TKI258 0.00785855110297654 -0.0500411962614584 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 TKI258 0.0171152035229281 -0.0470121063564098 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL TKI258 0.0155491846936484 -0.0474193475932108 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 TKI258 0.0333581531892175 -0.0454276465220065 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 TKI258 0.0215100111586092 -0.0473566702551013 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P TKI258 0.258121236948761 0.0425844028239384 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM TKI258 0.185815074598838 -0.0361940492623106 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 TKI258 0.40636343791525 -0.0197468577577604 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B TKI258 0.272274237208548 -0.0249894499354528 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B TKI258 0.400242462618872 -0.0193183812674285 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 TKI258 0.366150384735339 -0.0206952922070878 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 TKI258 0.846065318565207 0.00598294505384889 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 TKI258 0.862988866732896 0.00500961788610232 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 TKI258 0.0974471562593359 -0.0302378477938205 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A TKI258 0.163571287984698 0.0370477742195543 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 TKI258 0.162585895414682 -0.0255431412076665 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA TKI258 0.0974471562593359 -0.0302378477938205 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR TKI258 0.337726087166169 0.0277723038532607 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 TKI258 0.300252213518857 0.0324743016341764 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT TKI258 0.155335398673417 -0.0345523275258763 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 TKI258 0.0578174996915159 0.050094533185288 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 TKI258 0.0578174996915159 0.050094533185288 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS TKI258 0.0276026315975172 0.0641642544386173 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A TKI258 0.0773889525903124 0.0549385906715739 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 TKI258 0.0773889525903124 0.0549385906715739 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC TKI258 0.193693759983927 -0.0327833824536589 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE TKI258 0.193693759983927 -0.0327833824536589 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 TKI258 0.193693759983927 -0.0327833824536589 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS TKI258 0.159277917600446 -0.032313966427276 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 TKI258 0.130313123530268 -0.0338838985433927 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A TKI258 0.130313123530268 -0.0338838985433927 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C TKI258 0.130313123530268 -0.0338838985433927 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 TKI258 0.0904266083066213 -0.0363819348173261 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 TKI258 0.0904266083066213 -0.0363819348173261 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 TKI258 0.0904266083066213 -0.0363819348173261 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 TKI258 0.00979548076241908 -0.0492418277728935 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 TKI258 0.00952243411490888 -0.0479835571353814 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 TKI258 0.00952243411490888 -0.0479835571353814 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B TKI258 0.011001450828174 -0.0487653691666001 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM TKI258 0.0155491846936484 -0.0474193475932108 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 TKI258 0.185815074598838 -0.0361940492623106 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 TKI258 0.185815074598838 -0.0361940492623106 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 TKI258 0.400242462618872 -0.0193183812674285 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 Topotecan 0.791070919512907 0.0505325830635743 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 Topotecan 0.966597322181295 0.0249635623461835 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 Topotecan 0.742653185234794 0.0433611395523825 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G Topotecan 0.0973004235362455 0.0979920137240393 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 Topotecan 0.953550898148506 0.0106900870133453 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 Topotecan 0.276905742740375 0.0287430597565179 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 Topotecan 0.256746138416973 0.079821265072654 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR Topotecan 0.855543084029216 -0.0145213488823641 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH Topotecan 0.103478328740851 0.145744200984775 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 Topotecan 0.318782193467868 0.0894607322870877 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 Topotecan 0.318782193467868 0.0894607322870877 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 Topotecan 0.691400363096115 0.0307150742687088 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 Topotecan 0.996741101576092 0.0242084436221233 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 Topotecan 0.685883683965821 0.0521781520054296 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 Topotecan 0.301129534460148 0.0878347823448267 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 Topotecan 0.301129534460148 0.0878347823448267 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 Topotecan 0.3437375423251 0.0788813144799629 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 Topotecan 0.570266095331346 0.048070429132987 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 Topotecan 0.997768417696751 0.00574199497149408 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 Topotecan 0.997768417696751 0.00574199497149408 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 Topotecan 0.748544537264005 -0.0111991171055754 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 Topotecan 0.918447147053585 -0.000913594075838464 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL Topotecan 1 0.00841447117500005 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 Topotecan 0.631900275866177 0.03542200207611 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 Topotecan 0.809410048484983 0.022641946894975 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P Topotecan 0.557677759415501 0.0699535975725603 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM Topotecan 1 -0.00487819172964743 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 Topotecan 0.5914611525216 0.0532774280909343 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B Topotecan 0.86455342640861 0.0252335407929727 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B Topotecan 0.766362558485109 0.0311092597317812 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 Topotecan 0.636572118817594 0.0509569098681828 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 Topotecan 0.344987956993798 0.0799222242917761 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 Topotecan 0.440871209680998 0.0571422871279368 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 Topotecan 0.920973093095003 0.000543395344447806 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A Topotecan 0.0526190326176898 0.149309211310183 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 Topotecan 0.94066313277161 0.0104278469231884 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA Topotecan 0.920973093095003 0.000543395344447806 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR Topotecan 0.0991663313847413 0.0922735429158412 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 Topotecan 0.14737889698454 0.0789965457965134 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT Topotecan 0.766038479598184 -0.0329273258176048 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 Topotecan 0.185699644830973 0.0975809149916484 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 Topotecan 0.185699644830973 0.0975809149916484 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS Topotecan 0.103478328740851 0.145744200984775 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A Topotecan 0.389686989468431 0.0743220572614249 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 Topotecan 0.389686989468431 0.0743220572614249 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC Topotecan 0.662937664320933 0.0545366055980119 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE Topotecan 0.662937664320933 0.0545366055980119 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 Topotecan 0.662937664320933 0.0545366055980119 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS Topotecan 0.301129534460148 0.0878347823448267 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 Topotecan 0.3437375423251 0.0788813144799629 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A Topotecan 0.3437375423251 0.0788813144799629 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C Topotecan 0.3437375423251 0.0788813144799629 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 Topotecan 0.590380166528243 0.0492211050145994 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 Topotecan 0.590380166528243 0.0492211050145994 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 Topotecan 0.590380166528243 0.0492211050145994 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 Topotecan 0.993107412935437 0.00848619764726388 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 Topotecan 0.997768417696751 0.00574199497149408 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 Topotecan 0.997768417696751 0.00574199497149408 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B Topotecan 0.749247830904578 -0.0111968890778855 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM Topotecan 1 0.00841447117500005 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 Topotecan 1 -0.00487819172964743 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 Topotecan 1 -0.00487819172964743 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 Topotecan 0.766362558485109 0.0311092597317812 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4 GBM USP46 ZD.6474 0.485837859209432 -0.0257546941167175 10 0.0649350649350649 15 NM_001134223 chr4 - 53457126 53522759 53463805 53522477 9 USP46 GBM SCFD2 ZD.6474 0.50527457223154 -0.0230639123346257 12 0.0779220779220779 124 NM_152540 chr4 - 53739150 54232242 53740135 54232108 9 SCFD2 GBM LNX1 ZD.6474 0.50262535518653 -0.0234512714987014 15 0.0974025974025974 124 NM_032622 chr4 - 54326436 54424436 54327073 54424132 10 LNX1 GBM SEC61G ZD.6474 0.0343521455544649 0.0650099615256055 55 0.357142857142857 1003 NM_001012456 chr7 - 54819939 54826939 54820103 54825281 4 SEC61G GBM CHIC2 ZD.6474 0.498076738137324 -0.0207638504855621 19 0.123376623376623 125 NM_012110 chr4 - 54875957 54930815 54876261 54930467 6 CHIC2 GBM VOPP1 ZD.6474 0.160401482888711 0.0511440539464814 39 0.253246753246753 15 NM_001284282 chr7 - 55538300 55620466 55540547 55620348 5 VOPP1 GBM SEPT14 ZD.6474 0.0259342944074524 0.0831474791580833 26 0.168831168831169 1011 NM_207366 chr7 - 55861236 55930482 55863605 55929689 10 SEPT14 GBM KDR ZD.6474 0.205419131599044 -0.0510065371056403 10 0.0649350649350649 126 NM_002253 chr4 - 55944425 55991762 55946107 55991460 30 KDR GBM PSPH ZD.6474 0.00324955718235778 0.110777934068554 25 0.162337662337662 126 NM_004577 chr7 - 56078743 56119268 56079454 56088905 8 PSPH GBM PHKG1 ZD.6474 0.0261619581537084 0.0925859127873512 19 0.123376623376623 1013 NR_047689 chr7 - 56147975 56160689 56160689 56160689 9 PHKG1 GBM CHCHD2 ZD.6474 0.0261619581537084 0.0925859127873512 19 0.123376623376623 1013 NM_016139 chr7 - 56169254 56174323 56169543 56174106 4 CHCHD2 GBM ZNF479 ZD.6474 0.263084761845392 0.0583638883233308 14 0.0909090909090909 1021 NM_033273 chr7 - 57187325 57207571 57187546 57200031 5 ZNF479 GBM R3HDM2 ZD.6474 0.129690039392106 -0.060970169161614 11 0.0714285714285714 15 NM_014925 chr12 - 57647547 57704246 57648555 57704211 22 R3HDM2 GBM ARHGAP9 ZD.6474 0.231058843603156 -0.0489578097788521 12 0.0779220779220779 1026 NM_001080156 chr12 - 57866037 57871981 57866299 57871445 16 ARHGAP9 GBM MIR616 ZD.6474 0.187640943490654 -0.0533483691136702 16 0.103896103896104 1026 NR_030346 chr12 - 57912947 57913042 57913042 57913042 1 MIR616 GBM DDIT3 ZD.6474 0.187640943490654 -0.0533483691136702 16 0.103896103896104 1026 NM_001195057 chr12 - 57910370 57914300 57910591 57911189 4 DDIT3 GBM DCTN2 ZD.6474 0.164052874836464 -0.0528984994490544 17 0.11038961038961 128 NM_001261412 chr12 - 57923832 57941114 57924471 57940846 14 DCTN2 GBM B4GALNT1 ZD.6474 0.0412484953809985 -0.0706659366412443 19 0.123376623376623 1027 NM_001276468 chr12 - 58019677 58026464 58020526 58025915 10 B4GALNT1 GBM AGAP2 ZD.6474 0.0115507414404689 -0.0725330723659936 27 0.175324675324675 1028 NM_001122772 chr12 - 58118075 58132029 58120334 58132029 19 AGAP2 GBM CDK4 ZD.6474 0.0115507414404689 -0.0725330723659936 27 0.175324675324675 1028 NM_000075 chr12 - 58141509 58146230 58142307 58145500 8 CDK4 GBM CYP27B1 ZD.6474 0.0114846973410978 -0.074004969465336 26 0.168831168831169 1028 NM_000785 chr12 - 58156116 58160976 58156924 58160824 9 CYP27B1 GBM METTL1 ZD.6474 0.0223269643601737 -0.0705472352829379 24 0.155844155844156 1028 NM_005371 chr12 - 58162350 58165914 58162778 58165866 6 METTL1 GBM AVIL ZD.6474 0.0259974121800856 -0.0689891675312766 24 0.155844155844156 128 NM_006576 chr12 - 58191159 58209852 58191664 58209823 19 AVIL GBM MIR26A2 ZD.6474 0.0619792981937033 -0.0641013044598082 21 0.136363636363636 1029 NR_029847 chr12 - 58218391 58218475 58218475 58218475 1 MIR26A2 GBM CTDSP2 ZD.6474 0.0411060716698201 -0.0675081965479332 22 0.142857142857143 1029 NM_005730 chr12 - 58213709 58240747 58217384 58240218 8 CTDSP2 GBM ZNF733P ZD.6474 0.119997408522326 0.091108734528252 10 0.0649350649350649 1063 NR_003952 chr7 - 62751669 62764434 62764434 62764434 3 ZNF733P GBM CPM ZD.6474 0.0492414590020808 -0.0776155221866213 11 0.0714285714285714 139 NM_001874 chr12 - 69244955 69357020 69250216 69326617 9 CPM GBM PLEKHA6 ZD.6474 0.758575166915793 0.0119559133738523 11 0.0714285714285714 267 NM_014935 chr1 - 204187978 204329057 204192597 204242855 23 PLEKHA6 GBM PPP1R15B ZD.6474 0.968599550786657 -0.000422461643105443 12 0.0779220779220779 2144 NM_032833 chr1 - 204372491 204380945 204375219 204380539 2 PPP1R15B GBM PIK3C2B ZD.6474 0.943282132969772 0.00339252285027958 13 0.0844155844155844 2144 NM_002646 chr1 - 204391757 204459474 204393979 204438930 34 PIK3C2B GBM LRRN2 ZD.6474 0.800805944956622 0.0107913810747287 11 0.0714285714285714 268 NM_006338 chr1 - 204586302 204654481 204586978 204589120 3 LRRN2 GBM AVL9 ZD.6474 0.360637517918225 0.0369672520892879 14 0.0909090909090909 833 NM_015060 chr7 + 32535037 32628353 32535321 32623519 16 AVL9 GBM FKBP9 ZD.6474 0.369488727657935 0.0389150062414605 13 0.0844155844155844 104 NM_001284341 chr7 + 32997015 33046543 32997185 33044963 11 FKBP9 GBM FIP1L1 ZD.6474 0.260037280981073 -0.0323916771811401 21 0.136363636363636 124 NM_001134937 chr4 + 54243819 54326103 54244005 54325616 18 FIP1L1 GBM VSTM2A ZD.6474 0.158813264350828 0.0491447719997864 34 0.220779220779221 1001 NM_001317843 chr7 + 54610017 54620224 54610423 54617964 4 VSTM2A GBM GSX2 ZD.6474 0.402780715410845 -0.0245758575378112 20 0.12987012987013 1004 NM_133267 chr4 + 54966247 54968122 54966511 54968089 2 GSX2 GBM PDGFRA ZD.6474 0.260037280981073 -0.0323916771811401 21 0.136363636363636 1005 NM_006206 chr4 + 55095263 55164412 55124935 55161439 23 PDGFRA GBM EGFR ZD.6474 0.0905061939010194 0.0579719005738242 71 0.461038961038961 125 NM_201284 chr7 + 55086724 55238738 55086970 55238237 16 EGFR GBM LANCL2 ZD.6474 0.0664334717274924 0.0675120649740408 45 0.292207792207792 125 NM_018697 chr7 + 55433140 55501435 55433718 55499013 9 LANCL2 GBM KIT ZD.6474 0.337281921707607 -0.0309008797411665 15 0.0974025974025974 15 NM_000222 chr4 + 55524094 55606881 55524181 55604723 21 KIT GBM ZNF713 ZD.6474 0.0130360784621141 0.0920349403343677 26 0.168831168831169 126 NM_182633 chr7 + 55954969 56009918 55980329 56007699 7 ZNF713 GBM MRPS17 ZD.6474 0.0130360784621141 0.0920349403343677 26 0.168831168831169 1012 NM_015969 chr7 + 56019610 56023033 56020888 56022871 3 MRPS17 GBM GBAS ZD.6474 0.00324955718235778 0.110777934068554 25 0.162337662337662 1012 NM_001202469 chr7 + 56032269 56067875 56032302 56066765 8 GBAS GBM CCT6A ZD.6474 0.0243413523015662 0.0906024548201543 21 0.136363636363636 1013 NM_001009186 chr7 + 56119377 56131682 56119541 56130778 13 CCT6A GBM SUMF2 ZD.6474 0.0243413523015662 0.0906024548201543 21 0.136363636363636 1013 NM_001042469 chr7 + 56131916 56148365 56131947 56147305 8 SUMF2 GBM INHBC ZD.6474 0.240364696167203 -0.0479348569105194 12 0.0779220779220779 1026 NM_005538 chr12 + 57828467 57845845 57828669 57843805 2 INHBC GBM INHBE ZD.6474 0.240364696167203 -0.0479348569105194 12 0.0779220779220779 1026 NM_031479 chr12 + 57849095 57851791 57849319 57850631 2 INHBE GBM GLI1 ZD.6474 0.240364696167203 -0.0479348569105194 12 0.0779220779220779 1026 NM_001160045 chr12 + 57853917 57866047 57858646 57865844 10 GLI1 GBM MARS ZD.6474 0.187640943490654 -0.0533483691136702 16 0.103896103896104 1026 NM_004990 chr12 + 57881735 57910438 57881873 57910364 21 MARS GBM MBD6 ZD.6474 0.164052874836464 -0.0528984994490544 17 0.11038961038961 1026 NM_052897 chr12 + 57916658 57923931 57918086 57923017 13 MBD6 GBM KIF5A ZD.6474 0.164052874836464 -0.0528984994490544 17 0.11038961038961 1027 NM_004984 chr12 + 57943846 57978554 57944054 57976962 29 KIF5A GBM PIP4K2C ZD.6474 0.164052874836464 -0.0528984994490544 17 0.11038961038961 1027 NM_001146258 chr12 + 57984941 57997211 57985072 57995389 11 PIP4K2C GBM DTX3 ZD.6474 0.0942136388402518 -0.0595543143654425 18 0.116883116883117 1027 NM_001286246 chr12 + 57998404 58003587 58000300 58002935 6 DTX3 GBM ARHGEF25 ZD.6474 0.0942136388402518 -0.0595543143654425 18 0.116883116883117 1027 NM_001111270 chr12 + 58003962 58011028 58003999 58010677 16 ARHGEF25 GBM SLC26A10 ZD.6474 0.0942136388402518 -0.0595543143654425 18 0.116883116883117 1027 NM_133489 chr12 + 58013692 58019934 58014003 58019528 14 SLC26A10 GBM OS9 ZD.6474 0.0144953527336174 -0.0726707766234362 25 0.162337662337662 1028 NM_006812 chr12 + 58087737 58115340 58087944 58114692 15 OS9 GBM TSPAN31 ZD.6474 0.0115507414404689 -0.0725330723659936 27 0.175324675324675 1028 NM_005981 chr12 + 58138783 58142026 58138937 58141073 6 TSPAN31 GBM MARCH9 ZD.6474 0.0115507414404689 -0.0725330723659936 27 0.175324675324675 1028 NM_138396 chr12 + 58148880 58154193 58149311 58152680 4 MARCH9 GBM METTL21B ZD.6474 0.0142655281053728 -0.0735481842146399 25 0.162337662337662 1028 NM_015433 chr12 + 58166382 58176324 58166507 58174429 3 METTL21B GBM TSFM ZD.6474 0.0259974121800856 -0.0689891675312766 24 0.155844155844156 128 NM_001172697 chr12 + 58176527 58196639 58176584 58196414 6 TSFM GBM SLC35E3 ZD.6474 0.0492414590020808 -0.0776155221866213 11 0.0714285714285714 1112 NM_018656 chr12 + 69139935 69159853 69140157 69158670 5 SLC35E3 GBM MDM2 ZD.6474 0.0492414590020808 -0.0776155221866213 11 0.0714285714285714 17 NM_001145339 chr12 + 69201951 69239324 69202257 69233629 9 MDM2 GBM MDM4 ZD.6474 0.943282132969772 0.00339252285027958 13 0.0844155844155844 2145 NM_001204171 chr1 + 204485506 204527248 204494646 204518810 10 MDM4