Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10000045

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10000045
Fusion NameHBV-chr8 integration
ValidatedYes
Curated WayVISDB1.0
MethodInverse nested PCR (invPCR)
Wet AssayYes
Sample IDHepaRG-NTCP
Sample NameHepaRG-NTCP
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29437961
JournalJournal of Virology
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh38.p7
Human Genome RefSeq AccessionGCF_000001405.33
Human Chromosomechr8
Cytogenetic Bandq22.1
Human Strand+
Human Integration Location Type-
Hg19 Start93745853
Hg19 End93745853
Hg38 Start93745853
Hg38 End93745853
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneRBM12B-DT
Distance1236
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionU95551.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus subtype ayw, complete genome
Virus Genome Length3182
Virus Breakpoint1-
Virus Breakpoint21810
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA| |GCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACAT
ViMIC ID-