| Basic Information ▶ | |
| VISDB ID | TVIS10000170 |
|---|---|
| Fusion Name | HBV-PTPRN2 integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | Inverse nested PCR (invPCR) |
| Wet Assay | Yes |
| Sample ID | Huh7-NTCP |
| Sample Name | Huh7-NTCP |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 29437961 |
| Journal | Journal of Virology |
| Published Year | 2018 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38.p7 |
| Human Genome RefSeq Accession | GCF_000001405.33 |
| Human Chromosome | chr7 |
| Cytogenetic Band | q36.3 |
| Human Strand | + |
| Human Integration Location Type | Intronic |
| Hg19 Start | 158504100 |
| Hg19 End | 158504100 |
| Hg38 Start | 158504100 |
| Hg38 End | 158504100 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | PTPRN2 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | U95551.1 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus subtype ayw, complete genome |
| Virus Genome Length | 3182 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | 1811 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG| |CACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATC |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D