Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10000377

Basic Information ▶
VISDB ID	TVIS10000377
Fusion Name	HBV-chr11:q13.4 integration
Validated	Yes
Curated Way	VISDB1.0
Method	invPCR+NAH
Wet Assay	Yes
Sample ID	NL01.A
Sample Name	NL01.A
Sample Type	Cell line
Age	58
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	28414318
Journal	Oncogenesis
Published Year	2017
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr11
Cytogenetic Band	q13.4
Human Strand
Human Integration Location Type	-
Hg19 Start	71034849
Hg19 End	71034547
Hg38 Start	71323501
Hg38 End	71323803
Junction Sequence	AGCACCATGCACTGCCCTAGGGGCTGGTGACATAGCCCTGGATAGGCAAGGACCCTGCCCTCCTGGATGCCACCCTCCTGAGGACTGCACCCTCAACAAGCAGATACACAGGATGGCCTTGTAGATTCTGATGGGGCTTAGAAAGCCTCTACCTGCACAGTGAATGTGGGCTCGGGAAGATGGATTCACTGCTGTGGCTGAGCAGCCCCCTGTCCCCCAGGCTTCTCCGATCCCTCCTTACTTGGGGCTCCACCTGCCTTCAGGCCTCCTGTGGCAGCCGGTGGCCCTGACTCTGACCCTGG
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	A
Virus Genome Accession	X70185.1
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B Virus X, C, P and S overlapping ORF's
Virus Genome Length	3221
Virus Breakpoint1	1634
Virus Breakpoint2	1818
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	ATCCTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCCTACTTCAAAGACTGTGTGTTTAAGGACTGGGAGGAGCTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTATTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAA
ViMIC ID	-