| Basic Information ▶ | |
| VISDB ID | TVIS10000393 |
|---|---|
| Fusion Name | HBV-chr15:q11.2 integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | invPCR+NAH |
| Wet Assay | Yes |
| Sample ID | NL02.C |
| Sample Name | NL02.C |
| Sample Type | Cell line |
| Age | 35 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 28414318 |
| Journal | Oncogenesis |
| Published Year | 2017 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr15 |
| Cytogenetic Band | q11.2 |
| Human Strand | |
| Human Integration Location Type | - |
| Hg19 Start | 21340909 |
| Hg19 End | 21341183 |
| Hg38 Start | 21135580 |
| Hg38 End | 21135854 |
| Junction Sequence | AACACTTTCACACTGTTGGTGGGACTGTAAACTAGTTCAACCACTGTGGAAGACAGTGTGGCCATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCACTACTGGGTATATACCCAAAGGATTATAAATTGTGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATGAAGAAAATGTGGCACATATACACCATG |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | ENSG00000260986 |
| Distance | 5486 |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | C |
| Virus Genome Accession | AB033556.1 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus DNA, complete genome, isolate:AK66 |
| Virus Genome Length | 3215 |
| Virus Breakpoint1 | 1645 |
| Virus Breakpoint2 | 1764 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | GGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACAACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGT |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D