Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10004692

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10004692
Fusion NameHBV-AKAP9 integration
ValidatedNo
Curated WayVISDB1.0
MethodPCR and Ultra-deep sequencing
Wet AssayYes
Sample IDRK012
Sample NameRK012_T
Sample TypeTumor
Age63
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29861854
JournalOncotarget
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq21.2
Human Strand-
Human Integration Location TypeIntron
Hg19 Start91671908
Hg19 End91671908
Hg38 Start92042594
Hg38 End92042594
Junction Sequence-
Target Gene
Target GeneAKAP9
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAP011098
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome, strain: C0714154(WBK)F
Virus Genome Length3215
Virus Breakpoint12746
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGGTTCTATCCTAACCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTGAACATGCAGTTAATCATTACTTCAAAACTAGGCATTA| |TTTACATACTCTGTGGAAGGCTGGCATTCTATATAAGAGAGAAACTACACGCAGCGCTTCATTTTGTGGGTCACCATATTCTTGGGAACAAGAGCTACAG
ViMIC ID-