Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10004735

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10004735
Fusion NameHBV-chr5 integration
ValidatedNo
Curated WayVISDB1.0
MethodPCR and Ultra-deep sequencing
Wet AssayYes
Sample IDRK012
Sample NameRK012_NT
Sample TypeNontumor
Age63
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29861854
JournalOncotarget
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandp15.31
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start8082001
Hg19 End8082001
Hg38 Start8081888
Hg38 End8081888
Junction Sequence-
Target Gene
Target GeneENSG00000308020
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAP011098
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome, strain: C0714154(WBK)F
Virus Genome Length3215
Virus Breakpoint12177
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCCAGCATCCAGGGAATTAGTAGTCAGCTATGTCAATGTTAATA| |TGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTGAGTATTTGGTGTCTTTTGGAGTGTGGAT
ViMIC ID-