| Basic Information ▶ | |
| VISDB ID | TVIS10005087 |
|---|---|
| Fusion Name | HBV-PRPF38A integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | PCR and Ultra-deep sequencing |
| Wet Assay | Yes |
| Sample ID | RK042 |
| Sample Name | RK042_NT |
| Sample Type | Nontumor |
| Age | 57 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 29861854 |
| Journal | Oncotarget |
| Published Year | 2018 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr1 |
| Cytogenetic Band | p32.3 |
| Human Strand | - |
| Human Integration Location Type | Promoter PRPF38A,intron |
| Hg19 Start | 52871280 |
| Hg19 End | 52871280 |
| Hg38 Start | 52405608 |
| Hg38 End | 52405608 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | PRPF38A |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | AP011098 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus DNA, complete genome, strain: C0714154(WBK)F |
| Virus Genome Length | 3215 |
| Virus Breakpoint1 | 2431 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | GGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAA| |TCTCGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAA |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D