Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10005403

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10005403
Fusion NameHBV-LINC02367 integration
ValidatedNo
Curated WayVISDB1.0
MethodPCR and Ultra-deep sequencing
Wet AssayYes
Sample IDRK085
Sample NameRK085_NT
Sample TypeNontumor
Age65
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29861854
JournalOncotarget
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp13.31
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start9545510
Hg19 End9545510
Hg38 Start9392914
Hg38 End9392914
Junction Sequence-
Target Gene
Target GeneLINC02367, ENSG00000308602
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAP011098
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome, strain: C0714154(WBK)F
Virus Genome Length3215
Virus Breakpoint11798
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGT| |CTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGG
ViMIC ID-