Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10005440

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10005440
Fusion NameHBV-chr11 integration
ValidatedNo
Curated WayVISDB1.0
MethodPCR and Ultra-deep sequencing
Wet AssayYes
Sample IDRK092
Sample NameRK092_T
Sample TypeTumor
Age58
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29861854
JournalOncotarget
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq14.2
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start87553675
Hg19 End87553675
Hg38 Start87842783
Hg38 End87842783
Junction Sequence-
Target Gene
Target GeneENSG00000294816, ENSG00000285835
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAP011098
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome, strain: C0714154(WBK)F
Virus Genome Length3215
Virus Breakpoint11823
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGA
ViMIC ID-