Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10005624

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10005624
Fusion NameHBV-SDK1 integration
ValidatedNo
Curated WayVISDB1.0
MethodPCR and Ultra-deep sequencing
Wet AssayYes
Sample IDRK107
Sample NameRK107_NT
Sample TypeNontumor
Age57
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29861854
JournalOncotarget
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp22.2
Human Strand-
Human Integration Location TypeIntron
Hg19 Start3660338
Hg19 End3660338
Hg38 Start3620706
Hg38 End3620706
Junction Sequence-
Target Gene
Target GeneSDK1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAP011098
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome, strain: C0714154(WBK)F
Virus Genome Length3215
Virus Breakpoint11804
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTC| |ACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGG
ViMIC ID-