Basic Information ▼ | |
VISDB ID | TVIS10006177 |
---|---|
Fusion Name | HBV-CRISPLD2 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | PCR and Ultra-deep sequencing |
Wet Assay | Yes |
Sample ID | RK228 |
Sample Name | RK228_NT |
Sample Type | Nontumor |
Age | 37 |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 29861854 |
Journal | Oncotarget |
Published Year | 2018 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr16 |
Cytogenetic Band | q24.1 |
Human Strand | - |
Human Integration Location Type | Intron |
Hg19 Start | 84906460 |
Hg19 End | 84906460 |
Hg38 Start | 84872854 |
Hg38 End | 84872854 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | CRISPLD2 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | AP011098 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus DNA, complete genome, strain: C0714154(WBK)F |
Virus Genome Length | 3215 |
Virus Breakpoint1 | 1820 |
Virus Breakpoint2 | - |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | GTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAAC| |TTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAA |
ViMIC ID | - |