Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10006273

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10006273
Fusion NameHBV-PHRF1 integration
ValidatedNo
Curated WayVISDB1.0
MethodPCR and Ultra-deep sequencing
Wet AssayYes
Sample IDRK278
Sample NameRK278_NT
Sample TypeNontumor
Age52
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29861854
JournalOncotarget
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandp15.5
Human Strand-
Human Integration Location TypeIntron
Hg19 Start591185
Hg19 End591185
Hg38 Start591185
Hg38 End591185
Junction Sequence-
Target Gene
Target GenePHRF1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAP011098
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome, strain: C0714154(WBK)F
Virus Genome Length3215
Virus Breakpoint12667
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceATTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTTAATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTTCTATCCTAACCTTACCA| |AATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTGAACATGCAGTTAATCATTACTTCAAAACTAGGCATTATTTACATACTCTGTGGAAGGC
ViMIC ID-