Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10006519

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10006519
Fusion NameHBV-PTPRR integration
ValidatedYes
Curated WayVISDB1.0
MethodInverse nested PCR (invPCR) and sequencing
Wet AssayYes
Sample ID9
Sample Name9
Sample TypeTumor
Age39
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27453547
JournalGastroenterology
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh38
Human Genome RefSeq AccessionGCF_000001405.38
Human Chromosomechr12
Cytogenetic Bandq15
Human Strand
Human Integration Location TypeIntron
Hg19 Start70661649
Hg19 End70661649
Hg38 Start70661649
Hg38 End70661649
Junction Sequence-
Target Gene
Target GenePTPRR
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionV01460.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11750
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGAGAGGTGCGCCCCGTGGTCGGTCGGAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGA| |CGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTA
ViMIC ID-