Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10006784

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10006784
Fusion NameHBV-NCAM2 integration
ValidatedYes
Curated WayVISDB1.0
MethodInverse nested PCR (invPCR) and sequencing
Wet AssayYes
Sample ID23
Sample Name23
Sample TypeTumor
Age26
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27453547
JournalGastroenterology
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh38
Human Genome RefSeq AccessionGCF_000001405.38
Human Chromosomechr21
Cytogenetic Bandq21.1
Human Strand
Human Integration Location TypeIntron
Hg19 Start21342520
Hg19 End21342520
Hg38 Start21342520
Hg38 End21342520
Junction Sequence-
Target Gene
Target GeneNCAM2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionV01460.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11783
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGAT| |CCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTG
ViMIC ID-