Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10006972

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10006972
Fusion NameHBV-MGRN1 integration
ValidatedYes
Curated WayVISDB1.0
MethodAlu PCR and sequencing
Wet AssayYes
Sample IDG-22T
Sample NameG-22T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID25627239
JournalHEPATOLOGY
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr16
Cytogenetic Bandp13.3
Human Strand
Human Integration Location TypeIntronic
Hg19 Start4696050
Hg19 End4696050
Hg38 Start4646049
Hg38 End4646049
Junction Sequence-
Target Gene
Target GeneMGRN1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameB2
Virus Genome AccessionJQ688405
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus isolate HBVB2, complete genome
Virus Genome Length3215
Virus Breakpoint11902
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePre-core/core
Integrated Virus SequenceTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT| |GGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCC
ViMIC ID-