Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10006974

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10006974
Fusion NameHBV-STAT1 integration
ValidatedYes
Curated WayVISDB1.0
MethodAlu PCR and sequencing
Wet AssayYes
Sample IDG-23T
Sample NameG-23T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID25627239
JournalHEPATOLOGY
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp11.2
Human Strand
Human Integration Location TypeIntronic
Hg19 Start91836431
Hg19 End91836431
Hg38 Start91648405
Hg38 End91648405
Junction Sequence-
Target Gene
Target GeneLSP1P4, LSP1P5
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameC2
Virus Genome AccessionJQ688404
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus isolate HBVC2, complete genome
Virus Genome Length3215
Virus Breakpoint11403
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase ;X protein
Integrated Virus SequenceGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGGTGTGCTGCCAACTGGAT| |CCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCATCTG
ViMIC ID-