Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007020

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007020
Fusion NameHBV-ALB integration
ValidatedYes
Curated WayVISDB1.0
MethodPCR and Sanger sequencing
Wet AssayYes
Sample ID380
Sample Name380
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID26553052
JournalJ Gastroenterol
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq13.3
Human Strand+
Human Integration Location TypeExon
Hg19 Start74281973
Hg19 End74281973
Hg38 Start73416256
Hg38 End73416256
Junction Sequence-
Target Gene
Target GeneALB
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameC
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint12683
Virus Breakpoint22882
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-