Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007048

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007048
Fusion NameHBV-ADAMTS9-AS2 integration
ValidatedYes
Curated WayVISDB1.0
MethodPCR and Sanger sequencing
Wet AssayYes
Sample ID127
Sample Name127
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID26553052
JournalJ Gastroenterol
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp14.1
Human Strand-
Human Integration Location TypeIntron
Hg19 Start64946657
Hg19 End64946657
Hg38 Start64960982
Hg38 End64960982
Junction Sequence-
Target Gene
Target GeneADAMTS9-AS2, ENSG00000300285
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameC
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11262
Virus Breakpoint21568
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-