Basic Information ▼ | |
VISDB ID | TVIS10007184 |
---|---|
Fusion Name | HBV-CSMD3 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Next generation sequencing |
Wet Assay | No |
Sample ID | 80949 |
Sample Name | 080949L |
Sample Type | Nontumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 30271481 |
Journal | Journal of Cancer |
Published Year | 2018 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr8 |
Cytogenetic Band | q23.3 |
Human Strand | - |
Human Integration Location Type | Intronic |
Hg19 Start | 113456790 |
Hg19 End | 113456790 |
Hg38 Start | 112444561 |
Hg38 End | 112444561 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | CSMD3 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 331 |
Virus Breakpoint2 | - |
Virus Gene Name | - |
Virus Region Type | S protein|Polymerase|large S protein|middle S protein| |
Integrated Virus Sequence | CTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCA| |ATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCAT |
ViMIC ID | - |