Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007184

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007184
Fusion NameHBV-CSMD3 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID80949
Sample Name080949L
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandq23.3
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start113456790
Hg19 End113456790
Hg38 Start112444561
Hg38 End112444561
Junction Sequence-
Target Gene
Target GeneCSMD3
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1331
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeS protein|Polymerase|large S protein|middle S protein|
Integrated Virus SequenceCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCA| |ATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCAT
ViMIC ID-