Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007393

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007393
Fusion NameHBV-chr19 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID80962
Sample Name080962L
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.43
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start59111881
Hg19 End59111881
Hg38 Start58600514
Hg38 End58600514
Junction Sequence-
Target Gene
Target GeneMZF1-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11251
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase|
Integrated Virus SequenceGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTT| |CGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCT
ViMIC ID-