Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007706

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007706
Fusion NameHBV-LOC112268302 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID81222
Sample Name081222T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrX
Cytogenetic Bandq24
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start120398713
Hg19 End120398713
Hg38 Start121264859
Hg38 End121264859
Junction Sequence-
Target Gene
Target GeneENSG00000286163
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12018
Virus Breakpoint2-
Virus Gene Name-
Virus Region Typeprecore/core protein|Core and e antigen|
Integrated Virus SequenceATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCG| |GGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTG
ViMIC ID-