Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007746

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007746
Fusion NameHBV-RBM6 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID84999
Sample Name084999L
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp21.31
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start49999424
Hg19 End49999424
Hg38 Start49961991
Hg38 End49961991
Junction Sequence-
Target Gene
Target GeneRBM6
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11685
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|
Integrated Virus SequenceCTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGT| |CAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTG
ViMIC ID-