Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007957

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007957
Fusion NameHBV-chr5 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID678
Sample Name678P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq34
Human Strand-
Human Integration Location TypeIntergenic
Hg19 Start161071034
Hg19 End161071034
Hg38 Start161644028
Hg38 End161644028
Junction Sequence-
Target Gene
Target GeneGABRA6
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12138
Virus Breakpoint2-
Virus Gene Name-
Virus Region Typeprecore/core protein|Core and e antigen|
Integrated Virus SequenceAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCC| |AGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGA
ViMIC ID-