Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10007970

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10007970
Fusion NameHBV-LOC101929555 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID678
Sample Name678P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandp21.1
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start40878124
Hg19 End40878124
Hg38 Start40910385
Hg38 End40910385
Junction Sequence-
Target Gene
Target GeneENSG00000293636
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11832
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|precore/core protein|
Integrated Virus SequenceTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCT| |CTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGA
ViMIC ID-