Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10008150

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10008150
Fusion NameHBV-chr3 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID690
Sample Name690P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq26.1
Human Strand-
Human Integration Location TypeIntergenic
Hg19 Start162744491
Hg19 End162744491
Hg38 Start163026703
Hg38 End163026703
Junction Sequence-
Target Gene
Target GeneENSG00000241168
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12346
Virus Breakpoint2-
Virus Gene Name-
Virus Region Typeprecore/core protein|Core and e antigen|Polymerase|
Integrated Virus SequenceTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTT| |GTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTC
ViMIC ID-