Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10008602

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10008602
Fusion NameHBV-BPTF integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID712
Sample Name712Ca
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq24.2
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start65878073
Hg19 End65878073
Hg38 Start67881957
Hg38 End67881957
Junction Sequence-
Target Gene
Target GeneBPTF
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12511
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase|
Integrated Virus SequenceGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACC| |TGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTT
ViMIC ID-