Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10009901

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10009901
Fusion NameHBV-SIPA1L1 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID745
Sample Name745P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq24.2
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start71843385
Hg19 End71843385
Hg38 Start71376668
Hg38 End71376668
Junction Sequence-
Target Gene
Target GeneSIPA1L1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11727
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|
Integrated Virus SequenceGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTA| |AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT
ViMIC ID-