Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10009999

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10009999
Fusion NameHBV-IRF2 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID745
Sample Name745P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq35.1
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start185380717
Hg19 End185380717
Hg38 Start184459563
Hg38 End184459563
Junction Sequence-
Target Gene
Target GeneIRF2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12659
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase|
Integrated Virus SequenceACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGCAATTGATTATGCCTGCCAGGTTTTATCCA| |AAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACACTATTTACACACTC
ViMIC ID-