Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10010236

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10010236
Fusion NameHBV-ADGRL3 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID760
Sample Name760P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq13.1
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start62085873
Hg19 End62085873
Hg38 Start61220155
Hg38 End61220155
Junction Sequence-
Target Gene
Target GeneADGRL3
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12053
Virus Breakpoint2-
Virus Gene Name-
Virus Region Typeprecore/core protein|Core and e antigen|
Integrated Virus SequenceTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTC| |ACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCT
ViMIC ID-