Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10010294

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10010294
Fusion NameHBV-MEGF9 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID760
Sample Name760P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr9
Cytogenetic Bandq33.2
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start123462328
Hg19 End123462328
Hg38 Start120700050
Hg38 End120700050
Junction Sequence-
Target Gene
Target GeneMEGF9
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11827
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|precore/core protein|
Integrated Virus SequenceAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT
ViMIC ID-