Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10010690

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10010690
Fusion NameHBV-LINC00907 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID764
Sample Name764P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandq12.3
Human Strand-
Human Integration Location TypencRNA_intronic
Hg19 Start39992043
Hg19 End39992043
Hg38 Start42412078
Hg38 End42412078
Junction Sequence-
Target Gene
Target GeneLINC00907
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11765
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|
Integrated Virus SequenceTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAG| |GTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGT
ViMIC ID-