Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10010906

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10010906
Fusion NameHBV-chr8 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID764
Sample Name764P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandp12
Human Strand-
Human Integration Location TypeIntergenic
Hg19 Start35790547
Hg19 End35790547
Hg38 Start35933029
Hg38 End35933029
Junction Sequence-
Target Gene
Target GeneENSG00000253452
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11824
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|precore/core protein|
Integrated Virus SequenceTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG
ViMIC ID-