Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10011524

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10011524
Fusion NameHBV-DNAH9 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID775
Sample Name775P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandp12
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start11709029
Hg19 End11709029
Hg38 Start11805712
Hg38 End11805712
Junction Sequence-
Target Gene
Target GeneDNAH9
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11816
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|precore/core protein|
Integrated Virus SequenceCTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCA| |TGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCC
ViMIC ID-