Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10012391

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10012391
Fusion NameHBV-KLF3-AS1 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID795
Sample Name795P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandp14
Human Strand+
Human Integration Location TypencRNA_intronic
Hg19 Start38649479
Hg19 End38649479
Hg38 Start38647858
Hg38 End38647858
Junction Sequence-
Target Gene
Target GeneKLF3-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12463
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase|
Integrated Virus SequenceGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTG| |GACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACAC
ViMIC ID-