Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10012836

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10012836
Fusion NameHBV-HFM1 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID812
Sample Name812Ca
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp22.2
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start91834877
Hg19 End91834877
Hg38 Start91369320
Hg38 End91369320
Junction Sequence-
Target Gene
Target GeneHFM1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12880
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase|large S protein|
Integrated Virus SequenceATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTC| |TGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGC
ViMIC ID-