Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10013996

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10013996
Fusion NameHBV-ARHGEF12 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID850
Sample Name850Ca
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq23.3
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start120210371
Hg19 End120210371
Hg38 Start120339662
Hg38 End120339662
Junction Sequence-
Target Gene
Target GeneARHGEF12
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12397
Virus Breakpoint2-
Virus Gene Name-
Virus Region Typeprecore/core protein|Core and e antigen|Polymerase|
Integrated Virus SequenceTAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGA| |CGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTAT
ViMIC ID-