Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10014069

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10014069
Fusion NameHBV-chr8 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID850
Sample Name850Ca
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandq11.21
Human Strand-
Human Integration Location TypeIntergenic
Hg19 Start51787482
Hg19 End51787482
Hg38 Start50874922
Hg38 End50874922
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1301
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeS protein|Polymerase|large S protein|middle S protein|
Integrated Virus SequenceCAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTC| |TTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCAT
ViMIC ID-