Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10014408

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10014408
Fusion NameHBV-GABRB1 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample ID872
Sample Name872P
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandp12
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start47225028
Hg19 End47225028
Hg38 Start47223011
Hg38 End47223011
Junction Sequence-
Target Gene
Target GeneGABRB1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11818
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|precore/core protein|
Integrated Virus SequenceGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
ViMIC ID-