Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10014522

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10014522
Fusion NameHBV-chr2 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample IDB9
Sample NameB9
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq36.3
Human Strand-
Human Integration Location TypeIntergenic
Hg19 Start228279701
Hg19 End228279701
Hg38 Start227414985
Hg38 End227414985
Junction Sequence-
Target Gene
Target GeneENSG00000301805
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11376
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein|Polymerase|
Integrated Virus SequenceGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCA| |TGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCT
ViMIC ID-