Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10014589

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10014589
Fusion NameHBV-LOC107984974 integration
ValidatedNo
Curated WayVISDB1.0
MethodNext generation sequencing
Wet AssayNo
Sample IDSD075
Sample NameSD075
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq11.2
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start29358188
Hg19 End29358188
Hg38 Start31031170
Hg38 End31031170
Junction Sequence-
Target Gene
Target GeneENSG00000298294, ENSG00000266865, ENSG00000291063
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1577
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeS protein|Polymerase|large S protein|middle S protein|
Integrated Virus SequenceCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCA| |AACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAG
ViMIC ID-