Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10014720

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10014720
Fusion NameHBV-chr13 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample IDRK099
Sample NameRK099_C01
Sample TypeTumor
Age78
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27064257
JournalNature GeNetics
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq32.1
Human Strand-
Human Integration Location Type-
Hg19 Start97586002
Hg19 End97586002
Hg38 Start96933748
Hg38 End96933748
Junction Sequence-
Target Gene
Target GeneENSG00000309124
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAF043594.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus isolate 1/91, complete genome
Virus Genome Length3182
Virus Breakpoint11636
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAATT| |CTTGCCCAAGGTCTTATATAAGAGGACTCTTGGACTCTCTGTAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAG
ViMIC ID-