Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10014807

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10014807
Fusion NameHBV-PASD1 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample IDRK228
Sample NameRK228_C01
Sample TypeTumor
Age37
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27064257
JournalNature GeNetics
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrX
Cytogenetic Bandq28
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start150837858
Hg19 End150837858
Hg38 Start151669386
Hg38 End151669386
Junction Sequence-
Target Gene
Target GenePASD1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAP011098.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome, strain: C0714154(WBK)F
Virus Genome Length3215
Virus Breakpoint149
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCTCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTA| |TATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCAC
ViMIC ID-