Basic Information ▼ | |
VISDB ID | TVIS10014844 |
---|---|
Fusion Name | HBV-chr4 integration |
Validated | Yes |
Curated Way | VISDB1.0 |
Method | PCR and Sanger sequencing |
Wet Assay | Yes |
Sample ID | RK166 |
Sample Name | RK166 |
Sample Type | Tumor |
Age | 67 |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 25636086 |
Journal | NATURE COMMUNICATIONS |
Published Year | 2015 |
Human Genome ▼ | |
Human Genome Version Description | EGAN00001187690 EGAN00001187691 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr4 |
Cytogenetic Band | q13.1 |
Human Strand | |
Human Integration Location Type | - |
Hg19 Start | 63879681 |
Hg19 End | 63879681 |
Hg38 Start | 63013963 |
Hg38 End | 63013963 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | - |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | AP011098.1 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus DNA, complete genome, strain: C0714154(WBK)F |
Virus Genome Length | 3215 |
Virus Breakpoint1 | 1741 |
Virus Breakpoint2 | - |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | CCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTT| |GGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCA |
ViMIC ID | - |