Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10014872

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10014872
Fusion NameHBV-chr7 integration
ValidatedYes
Curated WayVISDB1.0
MethodPCR and Sanger sequencing
Wet AssayYes
Sample IDHB9
Sample NameHB9
Sample TypeTumor
Age60
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22634756
JournalNature GeNetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq11.22
Human Strand
Human Integration Location Type-
Hg19 Start70267023
Hg19 End70267023
Hg38 Start70802037
Hg38 End70802037
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneAUTS2
Distance8531
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus, complete genome
Virus Genome Length3215
Virus Breakpoint11895
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGGTCTGTTCACCAGCACCATGCAACTTTTTCCCCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT| |GGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGA
ViMIC ID-