Basic Information ▼ | |
VISDB ID | TVIS10015006 |
---|---|
Fusion Name | HBV-SENP5 integration |
Validated | Yes |
Curated Way | VISDB1.0 |
Method | PCR and Sanger sequencing |
Wet Assay | Yes |
Sample ID | 177 |
Sample Name | 177T |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 22634754 |
Journal | Nature GeNetics |
Published Year | 2012 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr3 |
Cytogenetic Band | q29 |
Human Strand | + |
Human Integration Location Type | Intronic |
Hg19 Start | 196625657 |
Hg19 End | 196625755 |
Hg38 Start | 196898786 |
Hg38 End | 196898884 |
Junction Sequence | ccattggaagatgattccattcgagaccattcgatgattgcattcaattcattcgatgacgattccattcaattccgttcaatgattccattagattc |
Target Gene ▼ | |
Target Gene | SENP5 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 1826 |
Virus Breakpoint2 | 1930 |
Virus Gene Name | - |
Virus Region Type | HBVgp3 X protein;HBVgp4 precore/core protein |
Integrated Virus Sequence | TCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGG |
ViMIC ID | - |