Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10015118

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10015118
Fusion NameHBV-TERT integration
ValidatedYes
Curated WayVISDB1.0
MethodPCR and Sanger sequencing
Wet AssayYes
Sample ID268
Sample Name268T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22634754
JournalNature GeNetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandp15.33
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start1291984
Hg19 End1292371
Hg38 Start1291869
Hg38 End1292256
Junction SequenceCTCCTCAACGAAGGAAGCTGGAGCACAAAAAGCAAAACTGGGTTGCATGACGCTTATCTGACTCGGCGTGGTCCACCTGAGCCGCAGCAGGTGTGAggcagctgccgttcgatgggtagggacttccagtcacgcaagacgcagcatttcaagcaacctgctgtaaacaccgccgagttagcaattctgcactgtacacagaaaacggtgttaggagtgccaatctcatgttatatgacttttgccaccataaaa
Target Gene
Target GeneTERT
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12447
Virus Breakpoint22998
Virus Gene Name-
Virus Region TypeHBVgp1 Polymerase;HBVgp4 precore/core protein
Integrated Virus SequenceATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGCAATTGATTATGCCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTT
ViMIC ID-